Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455540 | XP_024635441.1 | 96.512 | 688 | 22 | 2 | 1 | 687 | 1 | 687 | 0.0 | 1375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455540 | sp|Q9LG26|PARN_ARATH | 59.486 | 622 | 243 | 2 | 37 | 658 | 36 | 648 | 0.0 | 755 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455540 | A0A396ISR3 | 96.512 | 688 | 22 | 2 | 1 | 687 | 1 | 687 | 0.0 | 1375 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043660 | Msa0455540 | 0.824525 | 7.701764e-54 | -8.615850e-47 |
| Msa0054440 | Msa0455540 | 0.815735 | 7.938067e-52 | -8.615850e-47 |
| Msa0076780 | Msa0455540 | 0.816275 | 6.014135e-52 | -8.615850e-47 |
| Msa0115130 | Msa0455540 | 0.806201 | 9.226426e-50 | -8.615850e-47 |
| Msa0127020 | Msa0455540 | 0.828025 | 1.130801e-54 | -8.615850e-47 |
| Msa0137550 | Msa0455540 | 0.821735 | 3.448133e-53 | -8.615850e-47 |
| Msa0146770 | Msa0455540 | 0.823089 | 1.670910e-53 | -8.615850e-47 |
| Msa0169280 | Msa0455540 | 0.826798 | 2.226026e-54 | -8.615850e-47 |
| Msa0231660 | Msa0455540 | 0.805634 | 1.214545e-49 | -8.615850e-47 |
| Msa0455540 | Msa0467220 | 0.817095 | 3.938058e-52 | -8.615850e-47 |
| Msa0455540 | Msa0481030 | 0.817005 | 4.127209e-52 | -8.615850e-47 |
| Msa0455540 | Msa0481280 | 0.809453 | 1.878209e-50 | -8.615850e-47 |
| Msa0455540 | Msa0482130 | 0.816182 | 6.309533e-52 | -8.615850e-47 |
| Msa0455540 | Msa0486920 | 0.962210 | 1.317455e-120 | -8.615850e-47 |
| Msa0455540 | Msa0489410 | 0.808922 | 2.440558e-50 | -8.615850e-47 |
| Msa0455540 | Msa0500470 | 0.807550 | 4.785587e-50 | -8.615850e-47 |
| Msa0455540 | Msa0530290 | 0.803119 | 4.058246e-49 | -8.615850e-47 |
| Msa0455540 | Msa0542090 | 0.862514 | 4.802503e-64 | -8.615850e-47 |
| Msa0455540 | Msa0542130 | 0.864851 | 9.026611e-65 | -8.615850e-47 |
| Msa0455540 | Msa0554290 | 0.833987 | 3.887733e-56 | -8.615850e-47 |
| Msa0455540 | Msa0603670 | 0.800522 | 1.385768e-48 | -8.615850e-47 |
| Msa0455540 | Msa0605000 | 0.865472 | 5.759843e-65 | -8.615850e-47 |
| Msa0455540 | Msa0619210 | 0.818133 | 2.297431e-52 | -8.615850e-47 |
| Msa0455540 | Msa0685140 | 0.874069 | 9.005948e-68 | -8.615850e-47 |
| Msa0455540 | Msa0702370 | 0.816917 | 4.319704e-52 | -8.615850e-47 |
| Msa0455540 | Msa0702550 | 0.805661 | 1.198701e-49 | -8.615850e-47 |
| Msa0455540 | Msa0719420 | 0.800630 | 1.317105e-48 | -8.615850e-47 |
| Msa0455540 | Msa0772480 | 0.826088 | 3.286448e-54 | -8.615850e-47 |
| Msa0455540 | Msa0789680 | 0.801595 | 8.362416e-49 | -8.615850e-47 |
| Msa0455540 | Msa0795820 | 0.800106 | 1.683879e-48 | -8.615850e-47 |
| Msa0455540 | Msa0798440 | 0.818839 | 1.589527e-52 | -8.615850e-47 |
| Msa0455540 | Msa0802410 | 0.805255 | 1.458127e-49 | -8.615850e-47 |
| Msa0455540 | Msa0830540 | 0.809813 | 1.571614e-50 | -8.615850e-47 |
| Msa0455540 | Msa0859180 | 0.802282 | 6.041202e-49 | -8.615850e-47 |
| Msa0455540 | Msa0880040 | 0.800057 | 1.722538e-48 | -8.615850e-47 |
| Msa0455540 | Msa0909110 | 0.807394 | 5.164971e-50 | -8.615850e-47 |
| Msa0455540 | Msa0925770 | 0.821089 | 4.858676e-53 | -8.615850e-47 |
| Msa0455540 | Msa0945440 | 0.873474 | 1.430256e-67 | -8.615850e-47 |
| Msa0455540 | Msa1021540 | 0.800136 | 1.660705e-48 | -8.615850e-47 |
| Msa0455540 | Msa1088290 | 0.809209 | 2.119097e-50 | -8.615850e-47 |
| Msa0455540 | Msa1144040 | 0.814456 | 1.526918e-51 | -8.615850e-47 |
| Msa0455540 | Msa1197320 | 0.802506 | 5.432319e-49 | -8.615850e-47 |
| Msa0455540 | Msa1209260 | 0.800370 | 1.488239e-48 | -8.615850e-47 |
| Msa0455540 | Msa1209760 | 0.827529 | 1.487600e-54 | -8.615850e-47 |
| Msa0455540 | Msa1219170 | 0.822961 | 1.789798e-53 | -8.615850e-47 |
| Msa0455540 | Msa1224810 | 0.823270 | 1.515733e-53 | -8.615850e-47 |
| Msa0455540 | Msa1250790 | 0.804623 | 1.976404e-49 | -8.615850e-47 |
| Msa0455540 | Msa1259060 | 0.805439 | 1.334177e-49 | -8.615850e-47 |
| Msa0455540 | Msa1294070 | 0.814769 | 1.301345e-51 | -8.615850e-47 |
| Msa0455540 | Msa1390740 | 0.804787 | 1.826749e-49 | -8.615850e-47 |
| Msa0241470 | Msa0455540 | 0.840952 | 6.378147e-58 | -8.615850e-47 |
| Msa0257500 | Msa0455540 | 0.810399 | 1.175313e-50 | -8.615850e-47 |
| Msa0279220 | Msa0455540 | 0.825165 | 5.439430e-54 | -8.615850e-47 |
| Msa0279240 | Msa0455540 | 0.816922 | 4.307896e-52 | -8.615850e-47 |
| Msa0309750 | Msa0455540 | 0.815697 | 8.094783e-52 | -8.615850e-47 |
| Msa0318980 | Msa0455540 | 0.800495 | 1.402951e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455540 | MtrunA17_Chr3g0102481 | 96.512 | 688 | 22 | 2 | 1 | 687 | 1 | 687 | 0.0 | 1375 |
| Msa0455540 | MtrunA17_Chr7g0234031 | 30.449 | 624 | 363 | 20 | 35 | 646 | 25 | 589 | 2.18e-70 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455540 | AT1G55870.1 | 59.486 | 622 | 243 | 2 | 37 | 658 | 36 | 648 | 0.0 | 755 |
| Msa0455540 | AT1G55870.4 | 55.603 | 464 | 199 | 1 | 195 | 658 | 8 | 464 | 2.00e-179 | 520 |
| Msa0455540 | AT1G55870.2 | 60.580 | 345 | 129 | 1 | 314 | 658 | 1 | 338 | 5.78e-145 | 427 |
| Msa0455540 | AT1G55870.3 | 60.580 | 345 | 129 | 1 | 314 | 658 | 1 | 338 | 5.78e-145 | 427 |
| Msa0455540 | AT3G25430.1 | 27.516 | 636 | 376 | 19 | 18 | 635 | 4 | 572 | 2.65e-60 | 213 |
| Msa0455540 | AT3G25430.2 | 27.358 | 636 | 360 | 20 | 18 | 635 | 4 | 555 | 1.86e-57 | 205 |
Find 153 sgRNAs with CRISPR-Local
Find 553 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCAGGAGCTTTCTGGTTT+TGG | 0.164511 | 3_3:-48500134 | Msa0455540:CDS |
| TTTCCACGTCAGGAGCTTTC+TGG | 0.182890 | 3_3:-48500140 | Msa0455540:CDS |
| TTCCTTGTATTCAATCAATT+TGG | 0.228163 | 3_3:+48494587 | None:intergenic |
| TTGAGAACATTGTTATTATC+TGG | 0.233378 | 3_3:-48494941 | Msa0455540:CDS |
| CTCCTAAATCACTGCATAAC+TGG | 0.233696 | 3_3:+48495144 | None:intergenic |
| GCCCAGTTATGCAGTGATTT+AGG | 0.257302 | 3_3:-48495146 | Msa0455540:CDS |
| TGCTTCCCTTTCTTGTTCTC+TGG | 0.265913 | 3_3:+48499620 | None:intergenic |
| GACTACTTCGATGGATTTCT+TGG | 0.268029 | 3_3:-48500087 | Msa0455540:CDS |
| TTTCTAAATTAAATGATGTT+AGG | 0.268163 | 3_3:-48499554 | Msa0455540:CDS |
| TTCATGCGTGTTCTTCGTTC+GGG | 0.289154 | 3_3:+48501671 | None:intergenic |
| TGTAACTAGCTCGGTGCTTT+TGG | 0.289237 | 3_3:+48498288 | None:intergenic |
| CTCGTACTTCACTTGCCTTC+AGG | 0.295775 | 3_3:+48494904 | None:intergenic |
| GCATCCGCTGGGAAAACTTT+TGG | 0.305585 | 3_3:-48494724 | Msa0455540:CDS |
| AGAAACTCTGTTTGCTGATC+AGG | 0.312532 | 3_3:-48494637 | Msa0455540:CDS |
| TCACTTGCCTTCAGGTTAGA+AGG | 0.335224 | 3_3:+48494912 | None:intergenic |
| CTTAACTGATCAATTGTGTT+TGG | 0.336119 | 3_3:+48494481 | None:intergenic |
| TTTACATTCTCTTCTATAGT+TGG | 0.344960 | 3_3:+48494537 | None:intergenic |
| CATCCAGCTCTCAAGCTTGA+TGG | 0.345888 | 3_3:-48499366 | Msa0455540:CDS |
| GGCTTCTGCGCCACAGGAAT+GGG | 0.348545 | 3_3:+48494432 | None:intergenic |
| AATGTGAACAATGAGGTTTC+TGG | 0.349688 | 3_3:-48499095 | Msa0455540:CDS |
| AACAAGAAAGGGAAGCAATA+AGG | 0.360923 | 3_3:-48499614 | Msa0455540:CDS |
| CTTCATGCGTGTTCTTCGTT+CGG | 0.363263 | 3_3:+48501670 | None:intergenic |
| TTGTGGCGGTTGAAGAGGTT+AGG | 0.365222 | 3_3:+48501597 | None:intergenic |
| AGTTTGATCGCTCCGATGTT+CGG | 0.382519 | 3_3:-48501406 | Msa0455540:CDS |
| CATGTCTACAGCAAATTTAT+CGG | 0.389497 | 3_3:-48498487 | Msa0455540:CDS |
| CTGTATACACAACTATTTGT+TGG | 0.390531 | 3_3:+48499069 | None:intergenic |
| TCATTTAATTTAGAAATGTC+TGG | 0.392693 | 3_3:+48499561 | None:intergenic |
| AAGTTGAAGTTGATGATTCA+AGG | 0.401865 | 3_3:-48498246 | Msa0455540:intron |
| TTCTAAATTAAATGATGTTA+GGG | 0.404843 | 3_3:-48499553 | Msa0455540:CDS |
| ATGGCGTGATGGGTTATTAC+AGG | 0.412013 | 3_3:-48499466 | Msa0455540:CDS |
| GGATGAACTAAACTTACTTC+TGG | 0.413972 | 3_3:-48499039 | Msa0455540:intron |
| TGTTCTCAAACAAAATTTGT+TGG | 0.415338 | 3_3:+48494955 | None:intergenic |
| TGAGAACATTGTTATTATCT+GGG | 0.418628 | 3_3:-48494940 | Msa0455540:CDS |
| TGGCTTCTGCGCCACAGGAA+TGG | 0.419149 | 3_3:+48494431 | None:intergenic |
| AGCGGATGCAAAACCGAGAT+TGG | 0.425664 | 3_3:+48494738 | None:intergenic |
| GATGCTTATAAAGAAATTTG+TGG | 0.441063 | 3_3:-48494672 | Msa0455540:CDS |
| GAACATCGGAGCGATCAAAC+TGG | 0.442573 | 3_3:+48501408 | None:intergenic |
| CAAGTTGGCTTCTGCGCCAC+AGG | 0.442981 | 3_3:+48494426 | None:intergenic |
| GGTTATTACAGGAGCAAAAT+CGG | 0.443983 | 3_3:-48499455 | Msa0455540:CDS |
| TACATGCATTAAAATCAAAC+TGG | 0.446942 | 3_3:+48500057 | None:intergenic |
| TGTATACACAACTATTTGTT+GGG | 0.447606 | 3_3:+48499070 | None:intergenic |
| TCGGCGTTTGTCCTTTCCGA+TGG | 0.449616 | 3_3:-48501337 | Msa0455540:CDS |
| AGGTTCGCCGTTGTTCAGTT+CGG | 0.453497 | 3_3:-48501356 | Msa0455540:CDS |
| TGTCTGGACACTCACTATCA+TGG | 0.458158 | 3_3:+48499577 | None:intergenic |
| TTGGAGCCAGCAGCAATTTG+TGG | 0.460161 | 3_3:+48498307 | None:intergenic |
| ATTTATCCAGAGAACAAGAA+AGG | 0.462100 | 3_3:-48499626 | Msa0455540:CDS |
| CTAATTATGTGTACACCATC+AGG | 0.464455 | 3_3:-48494393 | Msa0455540:three_prime_UTR |
| TGTGGCGGTTGAAGAGGTTA+GGG | 0.473888 | 3_3:+48501598 | None:intergenic |
| CCTGCCTCATGCTTGCCTCC+AGG | 0.474138 | 3_3:+48495200 | None:intergenic |
| AGAAATCCATCGAAGTAGTC+TGG | 0.482313 | 3_3:+48500090 | None:intergenic |
| AAACTTCGAATCGTCGTTAG+CGG | 0.483892 | 3_3:-48501519 | Msa0455540:CDS |
| TGTAGTTTCTGTCTACCACT+TGG | 0.491252 | 3_3:-48494850 | Msa0455540:CDS |
| GCAAACAGAGTTTCTGATAA+GGG | 0.491406 | 3_3:+48494645 | None:intergenic |
| CGGCGTTTGTCCTTTCCGAT+GGG | 0.493200 | 3_3:-48501336 | Msa0455540:CDS |
| CTTGTAGAAGGAGGTAAAAG+AGG | 0.494009 | 3_3:-48498711 | Msa0455540:intron |
| CTGAACAACGGCGAACCTAC+TGG | 0.497338 | 3_3:+48501361 | None:intergenic |
| TCAGAACAGAAGTTGATAGT+TGG | 0.502195 | 3_3:-48498617 | Msa0455540:CDS |
| TATATCTTAGTTATATGCAT+GGG | 0.502273 | 3_3:-48495049 | Msa0455540:CDS |
| AATCGTCGTTAGCGGAGCTC+CGG | 0.504255 | 3_3:-48501511 | Msa0455540:CDS |
| GGATATGATGCTTTCATGAC+TGG | 0.504444 | 3_3:-48495179 | Msa0455540:CDS |
| AGCAAACAGAGTTTCTGATA+AGG | 0.504846 | 3_3:+48494644 | None:intergenic |
| TACACTAGAAACAAATTGAA+TGG | 0.506219 | 3_3:+48494365 | None:intergenic |
| GAAAGCTTAGAGAGAAGTAA+TGG | 0.511591 | 3_3:-48494762 | Msa0455540:CDS |
| TGGCAGAGAAATTCATTACA+TGG | 0.515487 | 3_3:+48500110 | None:intergenic |
| TCAGCTTAAGTTGATTCAGT+TGG | 0.517220 | 3_3:-48499331 | Msa0455540:intron |
| ACGGATATGCCACGAAGGAC+TGG | 0.517851 | 3_3:+48501303 | None:intergenic |
| CCTGGAGGCAAGCATGAGGC+AGG | 0.518137 | 3_3:-48495200 | Msa0455540:CDS |
| AACCAAATTGATTGAATACA+AGG | 0.519448 | 3_3:-48494589 | Msa0455540:CDS |
| AGATCGTCCAGCTGGAATCC+TGG | 0.520249 | 3_3:-48495218 | Msa0455540:CDS |
| CTTCGTTCGGGGTTTAGAAG+AGG | 0.521139 | 3_3:+48501683 | None:intergenic |
| TAGAAGAGGGATAACGAGAG+AGG | 0.521961 | 3_3:+48501697 | None:intergenic |
| AGGTAAAAGAGGAGAATCAA+AGG | 0.522105 | 3_3:-48498700 | Msa0455540:CDS |
| GGCGAAATCCAACTGCAGCT+TGG | 0.522198 | 3_3:+48498660 | None:intergenic |
| TCCTAAATCACTGCATAACT+GGG | 0.523426 | 3_3:+48495145 | None:intergenic |
| TTTATCCAGAGAACAAGAAA+GGG | 0.523900 | 3_3:-48499625 | Msa0455540:CDS |
| TGAAAGATAAGTTCAGTGAA+TGG | 0.529459 | 3_3:-48499485 | Msa0455540:CDS |
| GAATTTGCAGATCGTCCAGC+TGG | 0.533683 | 3_3:-48495226 | Msa0455540:intron |
| TTCGTCTAACCAGTCCTTCG+TGG | 0.534068 | 3_3:-48501312 | Msa0455540:CDS |
| TTCGAAGTTTGCAACGGTGA+CGG | 0.534899 | 3_3:+48501532 | None:intergenic |
| GCTGATCAGGCAAAGGCAGT+TGG | 0.534922 | 3_3:-48494624 | Msa0455540:CDS |
| GCAACGGTGACGGTCTTCGA+TGG | 0.535587 | 3_3:+48501542 | None:intergenic |
| TTCGTTCGGGGTTTAGAAGA+GGG | 0.536392 | 3_3:+48501684 | None:intergenic |
| AATCGGTCAGACCAAATTCA+AGG | 0.539111 | 3_3:-48499438 | Msa0455540:CDS |
| AAGTTCAGTGAATGGCGTGA+TGG | 0.547765 | 3_3:-48499477 | Msa0455540:CDS |
| CTATATCTTAGTTATATGCA+TGG | 0.549824 | 3_3:-48495050 | Msa0455540:CDS |
| AGTTCAGTGAATGGCGTGAT+GGG | 0.550536 | 3_3:-48499476 | Msa0455540:CDS |
| CCGACGATCGGACATGGTGC+CGG | 0.551309 | 3_3:+48501492 | None:intergenic |
| TTCCTTCAACAAAAGAAAGT+CGG | 0.553574 | 3_3:+48494782 | None:intergenic |
| AAACTGGAATGAATCACGCC+AGG | 0.554543 | 3_3:+48501424 | None:intergenic |
| CGGTGGTGTGGTTGTTGTGG+CGG | 0.555354 | 3_3:+48501583 | None:intergenic |
| GTCTGGACACTCACTATCAT+GGG | 0.555910 | 3_3:+48499578 | None:intergenic |
| GGTTGTTGTGGCGGTTGAAG+AGG | 0.557395 | 3_3:+48501592 | None:intergenic |
| GATATTATAGATCTAAATAC+CGG | 0.557851 | 3_3:-48495026 | Msa0455540:CDS |
| GGGATTTCCTTCTAACCTGA+AGG | 0.558626 | 3_3:-48494919 | Msa0455540:CDS |
| CTTGCCTCCAGGATTCCAGC+TGG | 0.558683 | 3_3:+48495211 | None:intergenic |
| CAAAGGCAGTTGGCATGAAG+TGG | 0.559051 | 3_3:-48494614 | Msa0455540:CDS |
| TCAACTTCTGTTCTGATGAA+AGG | 0.559958 | 3_3:+48498624 | None:intergenic |
| GAGAAGTAATGGTCCAATCT+CGG | 0.560192 | 3_3:-48494751 | Msa0455540:CDS |
| CGTGATAGTGTCGAAGAAGA+AGG | 0.563909 | 3_3:+48501635 | None:intergenic |
| ATGAAGATCCAAGCTGCAGT+TGG | 0.563917 | 3_3:-48498668 | Msa0455540:CDS |
| AATCCATCAAGCTTGAGAGC+TGG | 0.565036 | 3_3:+48499363 | None:intergenic |
| AGGCAAGCCGCCCATTCCTG+TGG | 0.568539 | 3_3:-48494442 | Msa0455540:three_prime_UTR |
| GCCATCGACCTCGAGATGAC+CGG | 0.569325 | 3_3:-48501461 | Msa0455540:CDS |
| TTGCGGTGGTGTGGTTGTTG+TGG | 0.569522 | 3_3:+48501580 | None:intergenic |
| TTTAATGCATGTATACATGA+AGG | 0.569703 | 3_3:-48500047 | Msa0455540:intron |
| TCTCTGCCAGACTACTTCGA+TGG | 0.569944 | 3_3:-48500096 | Msa0455540:CDS |
| TTCTGCGCCACAGGAATGGG+CGG | 0.570014 | 3_3:+48494435 | None:intergenic |
| CGAAGTCCGACGATCGGACA+TGG | 0.576467 | 3_3:+48501486 | None:intergenic |
| TTGGGATGGTGTAACTAGCT+CGG | 0.581065 | 3_3:+48498279 | None:intergenic |
| CGTCTCTTGAGGTTATAGCT+TGG | 0.582065 | 3_3:+48494981 | None:intergenic |
| TGGCGACGAAGTCCGACGAT+CGG | 0.583110 | 3_3:+48501480 | None:intergenic |
| GAGAACATTGTTATTATCTG+GGG | 0.588898 | 3_3:-48494939 | Msa0455540:CDS |
| CTCCGATGTTCGGTATCTCA+AGG | 0.590111 | 3_3:-48501396 | Msa0455540:CDS |
| GGTAAAAGAGGAGAATCAAA+GGG | 0.595963 | 3_3:-48498699 | Msa0455540:CDS |
| AGGTTAGAGACTCCGCCAGT+AGG | 0.598496 | 3_3:-48501376 | Msa0455540:CDS |
| TCCGGTCATCTCGAGGTCGA+TGG | 0.602825 | 3_3:+48501460 | None:intergenic |
| TCTGTTTGCTGATCAGGCAA+AGG | 0.603663 | 3_3:-48494631 | Msa0455540:CDS |
| ATGTCTGCCATGTTGACAGA+AGG | 0.603946 | 3_3:+48499525 | None:intergenic |
| TTATATCAATGTGAACAATG+AGG | 0.605285 | 3_3:-48499102 | Msa0455540:CDS |
| TTGTAACTCCGGTCATCTCG+AGG | 0.608427 | 3_3:+48501453 | None:intergenic |
| TCATGCGTGTTCTTCGTTCG+GGG | 0.609189 | 3_3:+48501672 | None:intergenic |
| AAACCAGAAAGCTCCTGACG+TGG | 0.613387 | 3_3:+48500137 | None:intergenic |
| CCGGAGTTACAAGTTCTCCC+TGG | 0.615817 | 3_3:-48501442 | Msa0455540:CDS |
| TTTGTTGGTACCGTCTCTTG+AGG | 0.616510 | 3_3:+48494970 | None:intergenic |
| CCGGCACCATGTCCGATCGT+CGG | 0.619938 | 3_3:-48501492 | Msa0455540:CDS |
| CCAGGGAGAACTTGTAACTC+CGG | 0.620061 | 3_3:+48501442 | None:intergenic |
| TAAGAAATGTTCAATCTCGT+AGG | 0.624237 | 3_3:-48494462 | Msa0455540:three_prime_UTR |
| TGATTCACATTGCGGTGGTG+TGG | 0.624689 | 3_3:+48501571 | None:intergenic |
| GGCAGAGAAATTCATTACAT+GGG | 0.625343 | 3_3:+48500111 | None:intergenic |
| TTGAATACAAGGAATCATTG+AGG | 0.627788 | 3_3:-48494578 | Msa0455540:CDS |
| GGACATACCTTCTGTCAACA+TGG | 0.630760 | 3_3:-48499532 | Msa0455540:CDS |
| AACTGGAATGAATCACGCCA+GGG | 0.631908 | 3_3:+48501425 | None:intergenic |
| GAATCCTGGAGGCAAGCATG+AGG | 0.641547 | 3_3:-48495204 | Msa0455540:CDS |
| AATAGTTGTGTATACAGACT+CGG | 0.645056 | 3_3:-48499063 | Msa0455540:CDS |
| ATATCTTAGTTATATGCATG+GGG | 0.647653 | 3_3:-48495048 | Msa0455540:CDS |
| ACTGGTTAGACGAATCCCAT+CGG | 0.648981 | 3_3:+48501321 | None:intergenic |
| AATTGAATGGTGCATCCTGA+TGG | 0.654552 | 3_3:+48494378 | None:intergenic |
| ACAAACGCCGAACTGAACAA+CGG | 0.666707 | 3_3:+48501349 | None:intergenic |
| AACCTTGAGATACCGAACAT+CGG | 0.667246 | 3_3:+48501394 | None:intergenic |
| ATGAAAGGAGATCAATAACA+TGG | 0.667767 | 3_3:+48498639 | None:intergenic |
| CGACGATTCGAAGTTTGCAA+CGG | 0.670188 | 3_3:+48501526 | None:intergenic |
| CAAGCTATAACCTCAAGAGA+CGG | 0.676408 | 3_3:-48494980 | Msa0455540:CDS |
| GGAAACGCTGATTCACATTG+CGG | 0.692132 | 3_3:+48501563 | None:intergenic |
| AACGCTGATTCACATTGCGG+TGG | 0.693300 | 3_3:+48501566 | None:intergenic |
| TGGAAAGCACTTGTTAACAG+AGG | 0.695071 | 3_3:+48498432 | None:intergenic |
| TTAGACGAATCCCATCGGAA+AGG | 0.705477 | 3_3:+48501326 | None:intergenic |
| ACAAAACATAGAAAATGCAG+AGG | 0.706266 | 3_3:+48498330 | None:intergenic |
| AACAACGGCGAACCTACTGG+CGG | 0.710795 | 3_3:+48501364 | None:intergenic |
| AATCAACTTAAGCTGACGTG+AGG | 0.725978 | 3_3:+48499338 | None:intergenic |
| TCGTCCAGCTGGAATCCTGG+AGG | 0.728618 | 3_3:-48495215 | Msa0455540:CDS |
| ACACTGCTGTTGCATCCAAG+TGG | 0.730685 | 3_3:+48494835 | None:intergenic |
| GTGTTACGGATATGCCACGA+AGG | 0.738897 | 3_3:+48501298 | None:intergenic |
| AGTTGTGTATACAGACTCGG+AGG | 0.742262 | 3_3:-48499060 | Msa0455540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTCTTTTATTTTATACA+TGG | - | chr3_3:48496079-48496098 | Msa0455540:intron | 10.0% |
| !! | AAATTGAAAATACATATAAT+TGG | - | chr3_3:48498236-48498255 | Msa0455540:intron | 10.0% |
| !! | AATTGAAAATACATATAATT+GGG | - | chr3_3:48498237-48498256 | Msa0455540:intron | 10.0% |
| !! | TAAGTATAAATGGAAAATTA+AGG | - | chr3_3:48494864-48494883 | Msa0455540:CDS | 15.0% |
| !! | AAAGAAATAAAAAATTAACC+AGG | + | chr3_3:48496068-48496087 | None:intergenic | 15.0% |
| !! | TTTCTAAATTAAATGATGTT+AGG | - | chr3_3:48496404-48496423 | Msa0455540:intron | 15.0% |
| !! | TTCTAAATTAAATGATGTTA+GGG | - | chr3_3:48496405-48496424 | Msa0455540:intron | 15.0% |
| !!! | TCATCTTTTAATATTATTTG+TGG | + | chr3_3:48497090-48497109 | None:intergenic | 15.0% |
| !! | AATTAAATCAATATCTGAAT+GGG | + | chr3_3:48498061-48498080 | None:intergenic | 15.0% |
| !! | AAATTAAATCAATATCTGAA+TGG | + | chr3_3:48498062-48498081 | None:intergenic | 15.0% |
| !!! | ATTTTTTCTTTTTACTGATT+TGG | - | chr3_3:48498762-48498781 | Msa0455540:intron | 15.0% |
| !!! | TTTTTTTCAAATTTTCACTT+TGG | - | chr3_3:48498842-48498861 | Msa0455540:intron | 15.0% |
| !!! | AACATTTGTTCTTTTAAATT+TGG | + | chr3_3:48501626-48501645 | None:intergenic | 15.0% |
| !!! | TAATTTTAACCAAATCAAAA+GGG | + | chr3_3:48501675-48501694 | None:intergenic | 15.0% |
| !! | ATTCATCAATCAAATTCTAT+TGG | + | chr3_3:48495247-48495266 | None:intergenic | 20.0% |
| !! | AATTATTGAGTGAAATTCAT+TGG | - | chr3_3:48495448-48495467 | Msa0455540:intron | 20.0% |
| !! | CATTTGAATTAAGAAAATGA+TGG | + | chr3_3:48495739-48495758 | None:intergenic | 20.0% |
| !! | TTAGCTAACTAATAGAATAA+AGG | - | chr3_3:48495988-48496007 | Msa0455540:intron | 20.0% |
| !!! | TCATTTAATTTAGAAATGTC+TGG | + | chr3_3:48496400-48496419 | None:intergenic | 20.0% |
| !!! | GATTATAAGTTTGAAATTTC+AGG | - | chr3_3:48496805-48496824 | Msa0455540:intron | 20.0% |
| !!! | ACTCTAGTTTTAGTTATAAA+TGG | - | chr3_3:48497064-48497083 | Msa0455540:intron | 20.0% |
| !! | GAGATTAAAGAACATTTATT+AGG | + | chr3_3:48497228-48497247 | None:intergenic | 20.0% |
| !! | ATTAAATCAATATCTGAATG+GGG | + | chr3_3:48498060-48498079 | None:intergenic | 20.0% |
| !! | GTAAAAAGAAAAAATGTACA+AGG | + | chr3_3:48498757-48498776 | None:intergenic | 20.0% |
| !! | AATTTAGTCAAAATCTGAAT+TGG | - | chr3_3:48498908-48498927 | Msa0455540:intron | 20.0% |
| !! | ATTTAGTCAAAATCTGAATT+GGG | - | chr3_3:48498909-48498928 | Msa0455540:intron | 20.0% |
| !! | TTTCATTAGAAAAAGTGAAA+AGG | - | chr3_3:48499073-48499092 | Msa0455540:CDS | 20.0% |
| !! | CAAATAAAAAAACTGTACAA+TGG | - | chr3_3:48500502-48500521 | Msa0455540:intron | 20.0% |
| !! | AAATTATGTAGACAGAAAAA+TGG | + | chr3_3:48500553-48500572 | None:intergenic | 20.0% |
| !! | TATATCTTAGTTATATGCAT+GGG | - | chr3_3:48500909-48500928 | Msa0455540:intron | 20.0% |
| !! | GATATTATAGATCTAAATAC+CGG | - | chr3_3:48500932-48500951 | Msa0455540:intron | 20.0% |
| !!! | AATTTTAACCAAATCAAAAG+GGG | + | chr3_3:48501674-48501693 | None:intergenic | 20.0% |
| !!! | CTAATTTTAACCAAATCAAA+AGG | + | chr3_3:48501676-48501695 | None:intergenic | 20.0% |
| !!! | CTTTTGATTTGGTTAAAATT+AGG | - | chr3_3:48501674-48501693 | Msa0455540:exon | 20.0% |
| !!! | TCTCTTTTGTTTTTGAGAAA+TGG | - | chr3_3:48494702-48494721 | Msa0455540:CDS | 25.0% |
| ! | ATAGATAGATAGATTCCTTA+GGG | - | chr3_3:48494801-48494820 | Msa0455540:CDS | 25.0% |
| ! | AATTAAAGTAAGACTCTTAG+TGG | - | chr3_3:48495153-48495172 | Msa0455540:CDS | 25.0% |
| !!! | TTTGACATTTTTTGTAATGC+TGG | - | chr3_3:48495180-48495199 | Msa0455540:CDS | 25.0% |
| ! | TAAAACTGTTCAAGTAATAG+TGG | - | chr3_3:48495212-48495231 | Msa0455540:CDS | 25.0% |
| ! | TTTGATTGATGAATCATGAT+TGG | - | chr3_3:48495253-48495272 | Msa0455540:intron | 25.0% |
| ! | TTGATTGATGAATCATGATT+GGG | - | chr3_3:48495254-48495273 | Msa0455540:intron | 25.0% |
| ! | CATATATCTACAAAAACATG+TGG | + | chr3_3:48495312-48495331 | None:intergenic | 25.0% |
| ! | TTTGTAGATATATGTTTGTC+AGG | - | chr3_3:48495318-48495337 | Msa0455540:intron | 25.0% |
| ! | ATTTACTAAGTCTAAACCAA+CGG | + | chr3_3:48495621-48495640 | None:intergenic | 25.0% |
| ! | GTTTAGACTTAGTAAATGTT+AGG | - | chr3_3:48495624-48495643 | Msa0455540:intron | 25.0% |
| ! | TACATGCATTAAAATCAAAC+TGG | + | chr3_3:48495904-48495923 | None:intergenic | 25.0% |
| ! | TTTAATGCATGTATACATGA+AGG | - | chr3_3:48495911-48495930 | Msa0455540:intron | 25.0% |
| !!! | TTATTTTGTGCTATTAGCTT+TGG | - | chr3_3:48495950-48495969 | Msa0455540:intron | 25.0% |
| ! | TACATGGAAAAACTAAAATG+TGG | - | chr3_3:48496095-48496114 | Msa0455540:intron | 25.0% |
| ! | TTTGCATATAACCATTACAT+CGG | + | chr3_3:48496173-48496192 | None:intergenic | 25.0% |
| ! | AGAAATCATTGAAGTCATAA+TGG | + | chr3_3:48496268-48496287 | None:intergenic | 25.0% |
| !! | ATTTGTCTTTTCTCTCATAT+TGG | - | chr3_3:48496691-48496710 | Msa0455540:intron | 25.0% |
| ! | TTATATCAATGTGAACAATG+AGG | - | chr3_3:48496856-48496875 | Msa0455540:intron | 25.0% |
| ! | TGTATACACAACTATTTGTT+GGG | + | chr3_3:48496891-48496910 | None:intergenic | 25.0% |
| ! | CCACATATCAAAAATTACAA+AGG | + | chr3_3:48496975-48496994 | None:intergenic | 25.0% |
| !! | CCTTTGTAATTTTTGATATG+TGG | - | chr3_3:48496972-48496991 | Msa0455540:intron | 25.0% |
| ! | CAAAATAATATAGCCTGTTA+AGG | + | chr3_3:48497404-48497423 | None:intergenic | 25.0% |
| !!! | GGCTATATTATTTTGTAAGA+CGG | - | chr3_3:48497409-48497428 | Msa0455540:intron | 25.0% |
| !! | TTCAACTTTTACTTTCACTT+GGG | + | chr3_3:48497700-48497719 | None:intergenic | 25.0% |
| ! | TGAAAGAGTTGTAAAAATGA+AGG | + | chr3_3:48497836-48497855 | None:intergenic | 25.0% |
| !!! | TTTTAGCTTAATTGCACTTT+TGG | - | chr3_3:48497934-48497953 | Msa0455540:intron | 25.0% |
| !! | AAATTGCTCATTTGAAACTA+CGG | + | chr3_3:48497999-48498018 | None:intergenic | 25.0% |
| !! | TAGTTTCAAATGAGCAATTT+TGG | - | chr3_3:48497999-48498018 | Msa0455540:intron | 25.0% |
| ! | AAAAAAGGGATAAACTATAG+GGG | + | chr3_3:48498025-48498044 | None:intergenic | 25.0% |
| ! | CAAAAAAGGGATAAACTATA+GGG | + | chr3_3:48498026-48498045 | None:intergenic | 25.0% |
| ! | TCAAAAAAGGGATAAACTAT+AGG | + | chr3_3:48498027-48498046 | None:intergenic | 25.0% |
| ! | TTAAATCAATATCTGAATGG+GGG | + | chr3_3:48498059-48498078 | None:intergenic | 25.0% |
| ! | ATTGTTTCAAATATCCACTT+TGG | + | chr3_3:48498138-48498157 | None:intergenic | 25.0% |
| !! | TCTTCACATTTTCAGAATTA+GGG | + | chr3_3:48498275-48498294 | None:intergenic | 25.0% |
| !! | TTCTTCACATTTTCAGAATT+AGG | + | chr3_3:48498276-48498295 | None:intergenic | 25.0% |
| ! | TTGAAAAACAATGAATTGTC+AGG | + | chr3_3:48498496-48498515 | None:intergenic | 25.0% |
| ! | TTTAGTCAAAATCTGAATTG+GGG | - | chr3_3:48498910-48498929 | Msa0455540:intron | 25.0% |
| !! | TTAGTTACAAATGAGCATTT+TGG | + | chr3_3:48498969-48498988 | None:intergenic | 25.0% |
| ! | AAAATGCTCATTTGTAACTA+AGG | - | chr3_3:48498968-48498987 | Msa0455540:intron | 25.0% |
| ! | AAATGCTCATTTGTAACTAA+GGG | - | chr3_3:48498969-48498988 | Msa0455540:intron | 25.0% |
| !! | TTTTACTGTTAGAAAAACAG+AGG | + | chr3_3:48499045-48499064 | None:intergenic | 25.0% |
| ! | TTCAACTATCTTCAAATCAA+GGG | + | chr3_3:48499648-48499667 | None:intergenic | 25.0% |
| ! | TTTCAACTATCTTCAAATCA+AGG | + | chr3_3:48499649-48499668 | None:intergenic | 25.0% |
| ! | ATTTGAAGATAGTTGAAACT+TGG | - | chr3_3:48499651-48499670 | Msa0455540:intron | 25.0% |
| ! | TTTGAAGATAGTTGAAACTT+GGG | - | chr3_3:48499652-48499671 | Msa0455540:intron | 25.0% |
| ! | TTTGACATTTCTGATATAAG+AGG | + | chr3_3:48499619-48499638 | None:intergenic | 25.0% |
| ! | TTTATTTGCCATAAAAGAGT+AGG | + | chr3_3:48500490-48500509 | None:intergenic | 25.0% |
| ! | ATAAAAAAACTGTACAATGG+CGG | - | chr3_3:48500505-48500524 | Msa0455540:intron | 25.0% |
| ! | GGAAGGAAAATTAATATAAG+AGG | + | chr3_3:48500653-48500672 | None:intergenic | 25.0% |
| ! | ATGAAAGGAACAATAAAAAG+AGG | + | chr3_3:48500697-48500716 | None:intergenic | 25.0% |
| !!! | ACATTTTTTGTTGGTATGAA+AGG | + | chr3_3:48500712-48500731 | None:intergenic | 25.0% |
| !!! | TGCAAATTCACATTTTTTGT+TGG | + | chr3_3:48500721-48500740 | None:intergenic | 25.0% |
| !!! | CTAATTGTTTTGAAGATTCA+TGG | + | chr3_3:48500853-48500872 | None:intergenic | 25.0% |
| ! | CTATATCTTAGTTATATGCA+TGG | - | chr3_3:48500908-48500927 | Msa0455540:intron | 25.0% |
| ! | ATATCTTAGTTATATGCATG+GGG | - | chr3_3:48500910-48500929 | Msa0455540:intron | 25.0% |
| !! | AGAATTTTCAACTGTATAAC+CGG | + | chr3_3:48500954-48500973 | None:intergenic | 25.0% |
| ! | TGTTCTCAAACAAAATTTGT+TGG | + | chr3_3:48501006-48501025 | None:intergenic | 25.0% |
| !! | TTGAGAACATTGTTATTATC+TGG | - | chr3_3:48501017-48501036 | Msa0455540:intron | 25.0% |
| !! | TGAGAACATTGTTATTATCT+GGG | - | chr3_3:48501018-48501037 | Msa0455540:intron | 25.0% |
| !!! | GAGTGTTTATCTAAAGTTTT+CGG | - | chr3_3:48501076-48501095 | Msa0455540:intron | 25.0% |
| ! | GATGCTTATAAAGAAATTTG+TGG | - | chr3_3:48501286-48501305 | Msa0455540:intron | 25.0% |
| ! | AACCAAATTGATTGAATACA+AGG | - | chr3_3:48501369-48501388 | Msa0455540:CDS | 25.0% |
| ! | TTCCTTGTATTCAATCAATT+TGG | + | chr3_3:48501374-48501393 | None:intergenic | 25.0% |
| ! | TTTACATTCTCTTCTATAGT+TGG | + | chr3_3:48501424-48501443 | None:intergenic | 25.0% |
| ! | TACACTAGAAACAAATTGAA+TGG | + | chr3_3:48501596-48501615 | None:intergenic | 25.0% |
| GATAGATAGATAGATTCCTT+AGG | - | chr3_3:48494800-48494819 | Msa0455540:CDS | 30.0% | |
| TTGGTTGAACTCAATGTTAT+TGG | - | chr3_3:48494833-48494852 | Msa0455540:CDS | 30.0% | |
| ATGGAAAATTAAGGCATGTT+TGG | - | chr3_3:48494873-48494892 | Msa0455540:CDS | 30.0% | |
| ! | ATGTTCCATAACTTTTACAC+GGG | + | chr3_3:48495496-48495515 | None:intergenic | 30.0% |
| ! | CATGTTCCATAACTTTTACA+CGG | + | chr3_3:48495497-48495516 | None:intergenic | 30.0% |
| TATTTCACCAAAAAAGAGAG+AGG | - | chr3_3:48495521-48495540 | Msa0455540:intron | 30.0% | |
| TCTAAATGGAATACATATGC+TGG | - | chr3_3:48495583-48495602 | Msa0455540:intron | 30.0% | |
| GCAAGTTTCTAAATTAGAAC+AGG | + | chr3_3:48495772-48495791 | None:intergenic | 30.0% | |
| AAATGTGGATTCTACACATA+TGG | - | chr3_3:48496110-48496129 | Msa0455540:intron | 30.0% | |
| AATGTGGATTCTACACATAT+GGG | - | chr3_3:48496111-48496130 | Msa0455540:intron | 30.0% | |
| TCATGATAAAACCGATGTAA+TGG | - | chr3_3:48496159-48496178 | Msa0455540:intron | 30.0% | |
| AGGTCATAGGAAATTTGAAT+AGG | - | chr3_3:48496221-48496240 | Msa0455540:intron | 30.0% | |
| AGGAAATTTGAATAGGCATT+TGG | - | chr3_3:48496228-48496247 | Msa0455540:intron | 30.0% | |
| ATTTATCCAGAGAACAAGAA+AGG | - | chr3_3:48496332-48496351 | Msa0455540:intron | 30.0% | |
| TTTATCCAGAGAACAAGAAA+GGG | - | chr3_3:48496333-48496352 | Msa0455540:intron | 30.0% | |
| TGAAAGATAAGTTCAGTGAA+TGG | - | chr3_3:48496473-48496492 | Msa0455540:intron | 30.0% | |
| ! | CATCATCTATTCACTTCTTT+TGG | - | chr3_3:48496725-48496744 | Msa0455540:intron | 30.0% |
| CTGTATACACAACTATTTGT+TGG | + | chr3_3:48496892-48496911 | None:intergenic | 30.0% | |
| AATAGTTGTGTATACAGACT+CGG | - | chr3_3:48496895-48496914 | Msa0455540:intron | 30.0% | |
| !!! | TCTACATTGGCATTGATTTT+TGG | - | chr3_3:48496996-48497015 | Msa0455540:intron | 30.0% |
| ! | TTTGGTTTAGAATCTTGAGA+TGG | - | chr3_3:48497014-48497033 | Msa0455540:intron | 30.0% |
| CCTATGCTAATAGAGTATAA+AGG | + | chr3_3:48497115-48497134 | None:intergenic | 30.0% | |
| CCTTTATACTCTATTAGCAT+AGG | - | chr3_3:48497112-48497131 | Msa0455540:intron | 30.0% | |
| TGCTGTAACATCAATAAACT+CGG | + | chr3_3:48497193-48497212 | None:intergenic | 30.0% | |
| CATTTATTAGGAACCCAATA+CGG | + | chr3_3:48497216-48497235 | None:intergenic | 30.0% | |
| GTTCTTTAATCTCTTGTAGA+AGG | - | chr3_3:48497235-48497254 | Msa0455540:intron | 30.0% | |
| ATGAAAGGAGATCAATAACA+TGG | + | chr3_3:48497322-48497341 | None:intergenic | 30.0% | |
| !!! | GTTGGTCATAACTGTTTTTT+AGG | - | chr3_3:48497359-48497378 | Msa0455540:intron | 30.0% |
| TGACATTCTTAATCCTTAAC+AGG | - | chr3_3:48497388-48497407 | Msa0455540:intron | 30.0% | |
| CATGTCTACAGCAAATTTAT+CGG | - | chr3_3:48497471-48497490 | Msa0455540:intron | 30.0% | |
| !!! | TGGACTTTTTCATTCTTTCT+TGG | + | chr3_3:48497596-48497615 | None:intergenic | 30.0% |
| ACAAAACATAGAAAATGCAG+AGG | + | chr3_3:48497631-48497650 | None:intergenic | 30.0% | |
| ! | CTTCAACTTTTACTTTCACT+TGG | + | chr3_3:48497701-48497720 | None:intergenic | 30.0% |
| !! | AAGTTGAAGTTGATGATTCA+AGG | - | chr3_3:48497712-48497731 | Msa0455540:intron | 30.0% |
| ATATAACCTTTGCATTACTG+GGG | + | chr3_3:48497883-48497902 | None:intergenic | 30.0% | |
| CATATAACCTTTGCATTACT+GGG | + | chr3_3:48497884-48497903 | None:intergenic | 30.0% | |
| !! | CAATTGATTTGAGAAACTAG+AGG | + | chr3_3:48497962-48497981 | None:intergenic | 30.0% |
| ! | AATTGCTCATTTGAAACTAC+GGG | + | chr3_3:48497998-48498017 | None:intergenic | 30.0% |
| TAAATCAATATCTGAATGGG+GGG | + | chr3_3:48498058-48498077 | None:intergenic | 30.0% | |
| ATGTGAAGAATACGAATTAG+AGG | - | chr3_3:48498286-48498305 | Msa0455540:CDS | 30.0% | |
| TGAAGACAAATTGAAGATGA+GGG | + | chr3_3:48498523-48498542 | None:intergenic | 30.0% | |
| TTGAAGACAAATTGAAGATG+AGG | + | chr3_3:48498524-48498543 | None:intergenic | 30.0% | |
| TTAAAAATGTCGATGAACGA+TGG | + | chr3_3:48498556-48498575 | None:intergenic | 30.0% | |
| GACACATGTATCATTTCTAT+TGG | + | chr3_3:48498868-48498887 | None:intergenic | 30.0% | |
| TTAGTCAAAATCTGAATTGG+GGG | - | chr3_3:48498911-48498930 | Msa0455540:intron | 30.0% | |
| TCACACAATTAGAAAATGAG+AGG | - | chr3_3:48499000-48499019 | Msa0455540:intron | 30.0% | |
| CACACAATTAGAAAATGAGA+GGG | - | chr3_3:48499001-48499020 | Msa0455540:intron | 30.0% | |
| ACACAATTAGAAAATGAGAG+GGG | - | chr3_3:48499002-48499021 | Msa0455540:intron | 30.0% | |
| TGATTGTAGCAAATGTGTTT+AGG | - | chr3_3:48499108-48499127 | Msa0455540:CDS | 30.0% | |
| ATCATCAACTACGAAGATAA+GGG | - | chr3_3:48499287-48499306 | Msa0455540:intron | 30.0% | |
| ATCTTTCTATCTATCCAGTT+AGG | - | chr3_3:48499318-48499337 | Msa0455540:intron | 30.0% | |
| TCTTTCTATCTATCCAGTTA+GGG | - | chr3_3:48499319-48499338 | Msa0455540:intron | 30.0% | |
| CTATATAAAGCTGCTTGTAA+CGG | + | chr3_3:48499459-48499478 | None:intergenic | 30.0% | |
| AAACACACTATAACTAAGCT+AGG | - | chr3_3:48499584-48499603 | Msa0455540:CDS | 30.0% | |
| TCTGATATAAGAGATGTAGT+TGG | + | chr3_3:48499610-48499629 | None:intergenic | 30.0% | |
| AAACACACTATAACTAAGCT+AGG | - | chr3_3:48499584-48499603 | Msa0455540:CDS | 30.0% | |
| TTCCACTATCTTCAAATCAA+GGG | + | chr3_3:48499806-48499825 | None:intergenic | 30.0% | |
| TTTCCACTATCTTCAAATCA+AGG | + | chr3_3:48499807-48499826 | None:intergenic | 30.0% | |
| !! | ATTTGAAGATAGTGGAAACT+TGG | - | chr3_3:48499809-48499828 | Msa0455540:intron | 30.0% |
| !! | TTTGAAGATAGTGGAAACTT+GGG | - | chr3_3:48499810-48499829 | Msa0455540:intron | 30.0% |
| ! | ATGTGAACTTCTTAACTTGA+GGG | - | chr3_3:48500135-48500154 | Msa0455540:CDS | 30.0% |
| ! | GAAACATTCCTACTCTTTTA+TGG | - | chr3_3:48500479-48500498 | Msa0455540:intron | 30.0% |
| ! | CATAATTTGCATATAGCTTG+AGG | - | chr3_3:48500565-48500584 | Msa0455540:intron | 30.0% |
| ! | GAGAACATTGTTATTATCTG+GGG | - | chr3_3:48501019-48501038 | Msa0455540:intron | 30.0% |
| TTCCTTCAACAAAAGAAAGT+CGG | + | chr3_3:48501179-48501198 | None:intergenic | 30.0% | |
| TTGAATACAAGGAATCATTG+AGG | - | chr3_3:48501380-48501399 | Msa0455540:CDS | 30.0% | |
| CTTAACTGATCAATTGTGTT+TGG | + | chr3_3:48501480-48501499 | None:intergenic | 30.0% | |
| TAAGAAATGTTCAATCTCGT+AGG | - | chr3_3:48501496-48501515 | Msa0455540:CDS | 30.0% | |
| ATTAGCCAAAAATCACAAGT+TGG | + | chr3_3:48501550-48501569 | None:intergenic | 30.0% | |
| ! | GGTGTTACGCTAAGTATAAA+TGG | - | chr3_3:48494854-48494873 | Msa0455540:CDS | 35.0% |
| ACAGCTTATCTAAGTGCTTA+AGG | - | chr3_3:48494900-48494919 | Msa0455540:CDS | 35.0% | |
| CCACGATAACTTAATGAACA+CGG | + | chr3_3:48495045-48495064 | None:intergenic | 35.0% | |
| ATTGATGAATCATGATTGGG+AGG | - | chr3_3:48495257-48495276 | Msa0455540:intron | 35.0% | |
| ! | GTTGCTAGTGCTTTTCTAAA+TGG | - | chr3_3:48495569-48495588 | Msa0455540:intron | 35.0% |
| GTTGTAAATACAGTAGCTTC+TGG | - | chr3_3:48495684-48495703 | Msa0455540:intron | 35.0% | |
| ! | AATACAGTAGCTTCTGGAAA+TGG | - | chr3_3:48495690-48495709 | Msa0455540:intron | 35.0% |
| ! | TTAGAAACTTGCTCTTTCTC+AGG | - | chr3_3:48495780-48495799 | Msa0455540:intron | 35.0% |
| ! | TTTCTATGTTTTTCCACGTC+AGG | - | chr3_3:48495808-48495827 | Msa0455540:intron | 35.0% |
| GGCAGAGAAATTCATTACAT+GGG | + | chr3_3:48495850-48495869 | None:intergenic | 35.0% | |
| TGGCAGAGAAATTCATTACA+TGG | + | chr3_3:48495851-48495870 | None:intergenic | 35.0% | |
| CTATAACTTTGATGCTTGAG+TGG | - | chr3_3:48496135-48496154 | Msa0455540:intron | 35.0% | |
| TGGTTATATGCAAACCTGAA+AGG | - | chr3_3:48496179-48496198 | Msa0455540:intron | 35.0% | |
| ATACATGACTCTTAGGTCAT+AGG | - | chr3_3:48496208-48496227 | Msa0455540:intron | 35.0% | |
| ATATCCCTGACATTATCCAA+GGG | + | chr3_3:48496309-48496328 | None:intergenic | 35.0% | |
| AACAAGAAAGGGAAGCAATA+AGG | - | chr3_3:48496344-48496363 | Msa0455540:intron | 35.0% | |
| GGTTATTACAGGAGCAAAAT+CGG | - | chr3_3:48496503-48496522 | Msa0455540:intron | 35.0% | |
| !! | CTTTTCGAGATCCTTGAATT+TGG | + | chr3_3:48496534-48496553 | None:intergenic | 35.0% |
| !! | TCAGCTTAAGTTGATTCAGT+TGG | - | chr3_3:48496627-48496646 | Msa0455540:intron | 35.0% |
| ATAGTATTGTGCATGTGCTA+AGG | - | chr3_3:48496759-48496778 | Msa0455540:intron | 35.0% | |
| AATGTGAACAATGAGGTTTC+TGG | - | chr3_3:48496863-48496882 | Msa0455540:intron | 35.0% | |
| GGATGAACTAAACTTACTTC+TGG | - | chr3_3:48496919-48496938 | Msa0455540:intron | 35.0% | |
| ! | TTTGATATGTGGCTCTACAT+TGG | - | chr3_3:48496983-48497002 | Msa0455540:intron | 35.0% |
| TTAGAATCTTGAGATGGCTA+AGG | - | chr3_3:48497020-48497039 | Msa0455540:intron | 35.0% | |
| GTTCAACCTATACTACACAT+GGG | + | chr3_3:48497141-48497160 | None:intergenic | 35.0% | |
| TGTTCAACCTATACTACACA+TGG | + | chr3_3:48497142-48497161 | None:intergenic | 35.0% | |
| CTTTAATCTCTTGTAGAAGG+AGG | - | chr3_3:48497238-48497257 | Msa0455540:intron | 35.0% | |
| AGGTAAAAGAGGAGAATCAA+AGG | - | chr3_3:48497258-48497277 | Msa0455540:intron | 35.0% | |
| GGTAAAAGAGGAGAATCAAA+GGG | - | chr3_3:48497259-48497278 | Msa0455540:intron | 35.0% | |
| TCAACTTCTGTTCTGATGAA+AGG | + | chr3_3:48497337-48497356 | None:intergenic | 35.0% | |
| !! | TCAGAACAGAAGTTGATAGT+TGG | - | chr3_3:48497341-48497360 | Msa0455540:intron | 35.0% |
| CATGAGCAATATCTGTATCA+TGG | + | chr3_3:48497455-48497474 | None:intergenic | 35.0% | |
| !!! | AACAAACTTTTCTGGAGTCT+CGG | + | chr3_3:48497505-48497524 | None:intergenic | 35.0% |
| ! | ATTTTCGTGTCAACAATGTG+TGG | + | chr3_3:48497549-48497568 | None:intergenic | 35.0% |
| ! | ACTTTTACTTTCACTTGGGA+TGG | + | chr3_3:48497696-48497715 | None:intergenic | 35.0% |
| CCATATAACCTTTGCATTAC+TGG | + | chr3_3:48497885-48497904 | None:intergenic | 35.0% | |
| CCAGTAATGCAAAGGTTATA+TGG | - | chr3_3:48497882-48497901 | Msa0455540:intron | 35.0% | |
| ! | ATTGCTCATTTGAAACTACG+GGG | + | chr3_3:48497997-48498016 | None:intergenic | 35.0% |
| GGGGCTATGAAATCAAAAAA+GGG | + | chr3_3:48498039-48498058 | None:intergenic | 35.0% | |
| TACGAATTAGAGGAGAAACA+CGG | - | chr3_3:48498296-48498315 | Msa0455540:CDS | 35.0% | |
| TAACAACAACGTGTACTGTT+GGG | + | chr3_3:48498599-48498618 | None:intergenic | 35.0% | |
| TTAACAACAACGTGTACTGT+TGG | + | chr3_3:48498600-48498619 | None:intergenic | 35.0% | |
| GTACAAGGAATGCGAAAAAT+AGG | + | chr3_3:48498742-48498761 | None:intergenic | 35.0% | |
| TAGAAAGGGGATAAACTAGA+AGG | - | chr3_3:48498942-48498961 | Msa0455540:intron | 35.0% | |
| AGAAAGGGGATAAACTAGAA+GGG | - | chr3_3:48498943-48498962 | Msa0455540:intron | 35.0% | |
| AATGTGTTAAAGCTGACAGT+TGG | + | chr3_3:48499255-48499274 | None:intergenic | 35.0% | |
| GATCATCAACTACGAAGATA+AGG | - | chr3_3:48499286-48499305 | Msa0455540:intron | 35.0% | |
| CCAAAAATTTGATCCCTAAC+TGG | + | chr3_3:48499335-48499354 | None:intergenic | 35.0% | |
| ! | CCAGTTAGGGATCAAATTTT+TGG | - | chr3_3:48499332-48499351 | Msa0455540:CDS | 35.0% |
| TCAGGTGTAAAATTCAGAGA+GGG | - | chr3_3:48499369-48499388 | Msa0455540:CDS | 35.0% | |
| ! | CAGCTTTATATAGAAGCTGA+AGG | - | chr3_3:48499466-48499485 | Msa0455540:CDS | 35.0% |
| !! | ACACATGTCAGTTTTGTAAC+AGG | + | chr3_3:48499513-48499532 | None:intergenic | 35.0% |
| TATGAATAGCTGTCAAGTGA+CGG | + | chr3_3:48499536-48499555 | None:intergenic | 35.0% | |
| AAGATAGTTGAAACTTGGGA+TGG | - | chr3_3:48499656-48499675 | Msa0455540:intron | 35.0% | |
| TATGAATAGCTGTCAAGTGA+CGG | + | chr3_3:48499536-48499555 | None:intergenic | 35.0% | |
| ! | TCTGATATAAGAGGTGTAGT+TGG | + | chr3_3:48499768-48499787 | None:intergenic | 35.0% |
| ! | ATCCCTTGATTTGAAGATAG+TGG | - | chr3_3:48499643-48499662 | Msa0455540:intron | 35.0% |
| !! | CTATTTTGGATAACATGGTG+TGG | + | chr3_3:48499876-48499895 | None:intergenic | 35.0% |
| !! | ATGGGCTATTTTGGATAACA+TGG | + | chr3_3:48499881-48499900 | None:intergenic | 35.0% |
| TGAAATGTCCTATCGAAGAT+GGG | + | chr3_3:48499899-48499918 | None:intergenic | 35.0% | |
| TTGAAATGTCCTATCGAAGA+TGG | + | chr3_3:48499900-48499919 | None:intergenic | 35.0% | |
| ! | TCTATGTCTGTTGTTTATGC+GGG | + | chr3_3:48499995-48500014 | None:intergenic | 35.0% |
| ! | CTCTATGTCTGTTGTTTATG+CGG | + | chr3_3:48499996-48500015 | None:intergenic | 35.0% |
| !! | AGTTTTGTACCTATGTCTGA+CGG | - | chr3_3:48500014-48500033 | Msa0455540:intron | 35.0% |
| AAGTTAAGAAGTTCACATGG+CGG | + | chr3_3:48500133-48500152 | None:intergenic | 35.0% | |
| CTCAAGTTAAGAAGTTCACA+TGG | + | chr3_3:48500136-48500155 | None:intergenic | 35.0% | |
| ! | CATGTGAACTTCTTAACTTG+AGG | - | chr3_3:48500134-48500153 | Msa0455540:CDS | 35.0% |
| ! | AACACATCTTTGAAGATGCA+GGG | - | chr3_3:48500362-48500381 | Msa0455540:intron | 35.0% |
| TCTCAAAAAACCACTGTTGT+CGG | + | chr3_3:48500461-48500480 | None:intergenic | 35.0% | |
| TCCTAAATCACTGCATAACT+GGG | + | chr3_3:48500816-48500835 | None:intergenic | 35.0% | |
| ! | TTCCGACTTTCTTTTGTTGA+AGG | - | chr3_3:48501174-48501193 | Msa0455540:intron | 35.0% |
| GAAAGCTTAGAGAGAAGTAA+TGG | - | chr3_3:48501196-48501215 | Msa0455540:intron | 35.0% | |
| GCAAACAGAGTTTCTGATAA+GGG | + | chr3_3:48501316-48501335 | None:intergenic | 35.0% | |
| AGCAAACAGAGTTTCTGATA+AGG | + | chr3_3:48501317-48501336 | None:intergenic | 35.0% | |
| ! | AGAAGCCAACTTGTGATTTT+TGG | - | chr3_3:48501542-48501561 | Msa0455540:CDS | 35.0% |
| CTAATTATGTGTACACCATC+AGG | - | chr3_3:48501565-48501584 | Msa0455540:CDS | 35.0% | |
| AAACTTCGAATCGTCGTTAG+CGG | - | chr3_3:48494439-48494458 | Msa0455540:three_prime_UTR | 40.0% | |
| AACCTTGAGATACCGAACAT+CGG | + | chr3_3:48494567-48494586 | None:intergenic | 40.0% | |
| TTCCTTAGGGTGTATGTGTT+TGG | - | chr3_3:48494814-48494833 | Msa0455540:CDS | 40.0% | |
| AACCAAACACATACACCCTA+AGG | + | chr3_3:48494819-48494838 | None:intergenic | 40.0% | |
| CCGTGTTCATTAAGTTATCG+TGG | - | chr3_3:48495042-48495061 | Msa0455540:CDS | 40.0% | |
| !! | GTTGTTTCTATAAGCTAGCC+TGG | - | chr3_3:48495086-48495105 | Msa0455540:CDS | 40.0% |
| AACATGTTCATAAGCTCTCC+AGG | + | chr3_3:48495107-48495126 | None:intergenic | 40.0% | |
| !! | GAGGCATTGCAATTTCATGA+TGG | - | chr3_3:48495276-48495295 | Msa0455540:intron | 40.0% |
| TGAGTCCCGTGTAAAAGTTA+TGG | - | chr3_3:48495488-48495507 | Msa0455540:intron | 40.0% | |
| !!! | CCAACATCCTCTCTCTTTTT+TGG | + | chr3_3:48495531-48495550 | None:intergenic | 40.0% |
| CCAAAAAAGAGAGAGGATGT+TGG | - | chr3_3:48495528-48495547 | Msa0455540:intron | 40.0% | |
| AAAAGAGAGAGGATGTTGGA+AGG | - | chr3_3:48495532-48495551 | Msa0455540:intron | 40.0% | |
| CTGGTATGAATGTTATCCGT+TGG | - | chr3_3:48495602-48495621 | Msa0455540:intron | 40.0% | |
| AGAAATCCATCGAAGTAGTC+TGG | + | chr3_3:48495871-48495890 | None:intergenic | 40.0% | |
| ! | GACTACTTCGATGGATTTCT+TGG | - | chr3_3:48495871-48495890 | Msa0455540:intron | 40.0% |
| TGACCTAAGAGTCATGTATC+TGG | + | chr3_3:48496207-48496226 | None:intergenic | 40.0% | |
| GATATCCCTGACATTATCCA+AGG | + | chr3_3:48496310-48496329 | None:intergenic | 40.0% | |
| AATCGGTCAGACCAAATTCA+AGG | - | chr3_3:48496520-48496539 | Msa0455540:intron | 40.0% | |
| AATCAACTTAAGCTGACGTG+AGG | + | chr3_3:48496623-48496642 | None:intergenic | 40.0% | |
| ! | CATGTGCTAAGGTTTTACAC+TGG | - | chr3_3:48496770-48496789 | Msa0455540:intron | 40.0% |
| TTGATGTTACAGCACCGTAT+TGG | - | chr3_3:48497199-48497218 | Msa0455540:intron | 40.0% | |
| TGATGTTACAGCACCGTATT+GGG | - | chr3_3:48497200-48497219 | Msa0455540:intron | 40.0% | |
| CTTGTAGAAGGAGGTAAAAG+AGG | - | chr3_3:48497247-48497266 | Msa0455540:intron | 40.0% | |
| !!! | ACAAACTTTTCTGGAGTCTC+GGG | + | chr3_3:48497504-48497523 | None:intergenic | 40.0% |
| ! | ACAGAGGCAACAAACTTTTC+TGG | + | chr3_3:48497513-48497532 | None:intergenic | 40.0% |
| !! | TGGAAAGCACTTGTTAACAG+AGG | + | chr3_3:48497529-48497548 | None:intergenic | 40.0% |
| ! | TTTTGTCCACAAATTGCTGC+TGG | - | chr3_3:48497645-48497664 | Msa0455540:intron | 40.0% |
| ATCTTACCCCAGTAATGCAA+AGG | - | chr3_3:48497874-48497893 | Msa0455540:intron | 40.0% | |
| ! | TTGCTCATTTGAAACTACGG+GGG | + | chr3_3:48497996-48498015 | None:intergenic | 40.0% |
| GGGGGCTATGAAATCAAAAA+AGG | + | chr3_3:48498040-48498059 | None:intergenic | 40.0% | |
| GACCCATGTTTCGTTTCTAT+TGG | - | chr3_3:48498112-48498131 | Msa0455540:intron | 40.0% | |
| GGCCAATAGAAACGAAACAT+GGG | + | chr3_3:48498117-48498136 | None:intergenic | 40.0% | |
| TGGCCAATAGAAACGAAACA+TGG | + | chr3_3:48498118-48498137 | None:intergenic | 40.0% | |
| TTCGTTTCTATTGGCCAAAG+TGG | - | chr3_3:48498121-48498140 | Msa0455540:intron | 40.0% | |
| GACAAATCAGAGGAGAAACA+TGG | - | chr3_3:48498323-48498342 | Msa0455540:CDS | 40.0% | |
| !! | GACGAAGACGAAGGTATTAA+CGG | - | chr3_3:48498362-48498381 | Msa0455540:CDS | 40.0% |
| !! | GGCGATGACAAAGGTATTAA+CGG | - | chr3_3:48498383-48498402 | Msa0455540:CDS | 40.0% |
| ATGGAGAATACGACAGTTGA+TGG | - | chr3_3:48498436-48498455 | Msa0455540:CDS | 40.0% | |
| AAAATGTCGATGAACGATGG+AGG | + | chr3_3:48498553-48498572 | None:intergenic | 40.0% | |
| AATGCAAACGAAGATGGCAA+GGG | + | chr3_3:48498684-48498703 | None:intergenic | 40.0% | |
| AAATGCAAACGAAGATGGCA+AGG | + | chr3_3:48498685-48498704 | None:intergenic | 40.0% | |
| GACGAAAATGCAAACGAAGA+TGG | + | chr3_3:48498690-48498709 | None:intergenic | 40.0% | |
| CAAAATCTGAATTGGGGGTA+TGG | - | chr3_3:48498916-48498935 | Msa0455540:intron | 40.0% | |
| ! | TTGGGGGTATGGAATTAGAA+AGG | - | chr3_3:48498927-48498946 | Msa0455540:intron | 40.0% |
| ! | TGGGGGTATGGAATTAGAAA+GGG | - | chr3_3:48498928-48498947 | Msa0455540:intron | 40.0% |
| ! | CAGAGGCTTAATTGCACTTT+TGG | + | chr3_3:48499028-48499047 | None:intergenic | 40.0% |
| GAGTTTCTCTCTTAAGTGGA+TGG | + | chr3_3:48499140-48499159 | None:intergenic | 40.0% | |
| GTTGGAGTTTCTCTCTTAAG+TGG | + | chr3_3:48499144-48499163 | None:intergenic | 40.0% | |
| TAACAATACACAGAGTCACC+AGG | - | chr3_3:48499194-48499213 | Msa0455540:intron | 40.0% | |
| TTGGTTTAGTCGTGCCAAAT+TGG | + | chr3_3:48499222-48499241 | None:intergenic | 40.0% | |
| !! | ATCTTCGTAGTTGATGATCG+TGG | + | chr3_3:48499285-48499304 | None:intergenic | 40.0% |
| CTCAGGTGTAAAATTCAGAG+AGG | - | chr3_3:48499368-48499387 | Msa0455540:CDS | 40.0% | |
| !! | AAGATAGTGGAAACTTGGGA+TGG | - | chr3_3:48499814-48499833 | Msa0455540:intron | 40.0% |
| CTTGGGATGGTTGTAGAAAT+TGG | - | chr3_3:48499827-48499846 | Msa0455540:intron | 40.0% | |
| !!! | CTATCGAAGATGGGCTATTT+TGG | + | chr3_3:48499890-48499909 | None:intergenic | 40.0% |
| CAAAATAGCCCATCTTCGAT+AGG | - | chr3_3:48499888-48499907 | Msa0455540:intron | 40.0% | |
| !! | AATGGGCTTCCAGTTTTTAG+GGG | + | chr3_3:48499946-48499965 | None:intergenic | 40.0% |
| !! | GAATGGGCTTCCAGTTTTTA+GGG | + | chr3_3:48499947-48499966 | None:intergenic | 40.0% |
| TGACAACCATTGTGTCGAAT+GGG | + | chr3_3:48499963-48499982 | None:intergenic | 40.0% | |
| TCTTAAAAGCCGTCAGACAT+AGG | + | chr3_3:48500026-48500045 | None:intergenic | 40.0% | |
| !! | ATGTCTGACGGCTTTTAAGA+AGG | - | chr3_3:48500026-48500045 | Msa0455540:intron | 40.0% |
| ! | AAACACGGCTTGCTTCAAAA+TGG | - | chr3_3:48500082-48500101 | Msa0455540:CDS | 40.0% |
| AGTTAAGAAGTTCACATGGC+GGG | + | chr3_3:48500132-48500151 | None:intergenic | 40.0% | |
| ! | TGAACTTCTTAACTTGAGGG+AGG | - | chr3_3:48500138-48500157 | Msa0455540:CDS | 40.0% |
| ! | GAACTTCTTAACTTGAGGGA+GGG | - | chr3_3:48500139-48500158 | Msa0455540:CDS | 40.0% |
| ! | AACTTCTTAACTTGAGGGAG+GGG | - | chr3_3:48500140-48500159 | Msa0455540:CDS | 40.0% |
| ! | GAACACATCTTTGAAGATGC+AGG | - | chr3_3:48500361-48500380 | Msa0455540:intron | 40.0% |
| CTCAAAAAACCACTGTTGTC+GGG | + | chr3_3:48500460-48500479 | None:intergenic | 40.0% | |
| TAAGATAACACGGAAACGGA+AGG | + | chr3_3:48500670-48500689 | None:intergenic | 40.0% | |
| CAGCTAAGATAACACGGAAA+CGG | + | chr3_3:48500674-48500693 | None:intergenic | 40.0% | |
| AAGAGGCAGCTAAGATAACA+CGG | + | chr3_3:48500680-48500699 | None:intergenic | 40.0% | |
| GGATATGATGCTTTCATGAC+TGG | - | chr3_3:48500779-48500798 | Msa0455540:intron | 40.0% | |
| CTCCTAAATCACTGCATAAC+TGG | + | chr3_3:48500817-48500836 | None:intergenic | 40.0% | |
| CAAGCTATAACCTCAAGAGA+CGG | - | chr3_3:48500978-48500997 | Msa0455540:intron | 40.0% | |
| TGTAGTTTCTGTCTACCACT+TGG | - | chr3_3:48501108-48501127 | Msa0455540:intron | 40.0% | |
| GAGAAGTAATGGTCCAATCT+CGG | - | chr3_3:48501207-48501226 | Msa0455540:intron | 40.0% | |
| ! | AGAAACTCTGTTTGCTGATC+AGG | - | chr3_3:48501321-48501340 | Msa0455540:CDS | 40.0% |
| AATTGAATGGTGCATCCTGA+TGG | + | chr3_3:48501583-48501602 | None:intergenic | 40.0% | |
| !! | AGAAGTCACCCCTTTTGATT+TGG | - | chr3_3:48501663-48501682 | Msa0455540:exon | 40.0% |
| TAGAAGAGGGATAACGAGAG+AGG | + | chr3_3:48494264-48494283 | None:intergenic | 45.0% | |
| TTCGTTCGGGGTTTAGAAGA+GGG | + | chr3_3:48494277-48494296 | None:intergenic | 45.0% | |
| TTCATGCGTGTTCTTCGTTC+GGG | + | chr3_3:48494290-48494309 | None:intergenic | 45.0% | |
| CTTCATGCGTGTTCTTCGTT+CGG | + | chr3_3:48494291-48494310 | None:intergenic | 45.0% | |
| ! | CGTGATAGTGTCGAAGAAGA+AGG | + | chr3_3:48494326-48494345 | None:intergenic | 45.0% |
| !! | GGAAACGCTGATTCACATTG+CGG | + | chr3_3:48494398-48494417 | None:intergenic | 45.0% |
| TTCGAAGTTTGCAACGGTGA+CGG | + | chr3_3:48494429-48494448 | None:intergenic | 45.0% | |
| CGACGATTCGAAGTTTGCAA+CGG | + | chr3_3:48494435-48494454 | None:intergenic | 45.0% | |
| AACTGGAATGAATCACGCCA+GGG | + | chr3_3:48494536-48494555 | None:intergenic | 45.0% | |
| AAACTGGAATGAATCACGCC+AGG | + | chr3_3:48494537-48494556 | None:intergenic | 45.0% | |
| AGTTTGATCGCTCCGATGTT+CGG | - | chr3_3:48494552-48494571 | Msa0455540:CDS | 45.0% | |
| ACAAACGCCGAACTGAACAA+CGG | + | chr3_3:48494612-48494631 | None:intergenic | 45.0% | |
| TTAGACGAATCCCATCGGAA+AGG | + | chr3_3:48494635-48494654 | None:intergenic | 45.0% | |
| ACTGGTTAGACGAATCCCAT+CGG | + | chr3_3:48494640-48494659 | None:intergenic | 45.0% | |
| !! | AGAGAGAGAGAGAGGTGTTA+CGG | + | chr3_3:48494677-48494696 | None:intergenic | 45.0% |
| AGAGATAGAGAGAGAGAGAG+AGG | + | chr3_3:48494685-48494704 | None:intergenic | 45.0% | |
| GGGACTCATTCTCAAAGTAG+TGG | + | chr3_3:48495476-48495495 | None:intergenic | 45.0% | |
| GCACCACTATCTGCTGTAAA+AGG | - | chr3_3:48496018-48496037 | Msa0455540:intron | 45.0% | |
| ! | GGACCTTTTACAGCAGATAG+TGG | + | chr3_3:48496024-48496043 | None:intergenic | 45.0% |
| CTATCTGCTGTAAAAGGTCC+TGG | - | chr3_3:48496024-48496043 | Msa0455540:intron | 45.0% | |
| ! | TCATGTATCTGGAGCCTTTC+AGG | + | chr3_3:48496196-48496215 | None:intergenic | 45.0% |
| GCTCCAGATACATGACTCTT+AGG | - | chr3_3:48496201-48496220 | Msa0455540:intron | 45.0% | |
| AGTTTGAGAGTTTGCACCCT+TGG | - | chr3_3:48496290-48496309 | Msa0455540:intron | 45.0% | |
| TTGCACCCTTGGATAATGTC+AGG | - | chr3_3:48496301-48496320 | Msa0455540:intron | 45.0% | |
| TGCACCCTTGGATAATGTCA+GGG | - | chr3_3:48496302-48496321 | Msa0455540:intron | 45.0% | |
| TGCTTCCCTTTCTTGTTCTC+TGG | + | chr3_3:48496341-48496360 | None:intergenic | 45.0% | |
| GTCTGGACACTCACTATCAT+GGG | + | chr3_3:48496383-48496402 | None:intergenic | 45.0% | |
| TGTCTGGACACTCACTATCA+TGG | + | chr3_3:48496384-48496403 | None:intergenic | 45.0% | |
| GGACATACCTTCTGTCAACA+TGG | - | chr3_3:48496426-48496445 | Msa0455540:intron | 45.0% | |
| ATGTCTGCCATGTTGACAGA+AGG | + | chr3_3:48496436-48496455 | None:intergenic | 45.0% | |
| AAGTTCAGTGAATGGCGTGA+TGG | - | chr3_3:48496481-48496500 | Msa0455540:intron | 45.0% | |
| AGTTCAGTGAATGGCGTGAT+GGG | - | chr3_3:48496482-48496501 | Msa0455540:intron | 45.0% | |
| !! | ATGGCGTGATGGGTTATTAC+AGG | - | chr3_3:48496492-48496511 | Msa0455540:intron | 45.0% |
| AATCCATCAAGCTTGAGAGC+TGG | + | chr3_3:48496598-48496617 | None:intergenic | 45.0% | |
| AGTTGTGTATACAGACTCGG+AGG | - | chr3_3:48496898-48496917 | Msa0455540:intron | 45.0% | |
| AGGCATCCCATGTGTAGTAT+AGG | - | chr3_3:48497132-48497151 | Msa0455540:intron | 45.0% | |
| ATGAAGATCCAAGCTGCAGT+TGG | - | chr3_3:48497290-48497309 | Msa0455540:intron | 45.0% | |
| ! | TGCAGAGGCAAGTGATTTTC+TGG | + | chr3_3:48497616-48497635 | None:intergenic | 45.0% |
| !!! | TGTAACTAGCTCGGTGCTTT+TGG | + | chr3_3:48497673-48497692 | None:intergenic | 45.0% |
| TTGGGATGGTGTAACTAGCT+CGG | + | chr3_3:48497682-48497701 | None:intergenic | 45.0% | |
| GGTATTAACGGCGATGACAA+AGG | - | chr3_3:48498374-48498393 | Msa0455540:CDS | 45.0% | |
| !! | GACAAAGGTATTAACGGCGA+TGG | - | chr3_3:48498389-48498408 | Msa0455540:CDS | 45.0% |
| ! | AAGGTATTAACGGCGATGGA+AGG | - | chr3_3:48498393-48498412 | Msa0455540:CDS | 45.0% |
| !! | GAGAATACGACAGTTGATGG+AGG | - | chr3_3:48498439-48498458 | Msa0455540:CDS | 45.0% |
| !! | ATACGACAGTTGATGGAGGA+AGG | - | chr3_3:48498443-48498462 | Msa0455540:CDS | 45.0% |
| GAGGAAAACGAATACGACGA+CGG | + | chr3_3:48498662-48498681 | None:intergenic | 45.0% | |
| ! | GGGGGTATGGAATTAGAAAG+GGG | - | chr3_3:48498929-48498948 | Msa0455540:intron | 45.0% |
| ! | AGTCATGACTGGTTAGGATC+TGG | + | chr3_3:48499168-48499187 | None:intergenic | 45.0% |
| TGTTACTCGTGAGTCATGAC+TGG | + | chr3_3:48499179-48499198 | None:intergenic | 45.0% | |
| !! | TCGTAGTTGATGATCGTGGA+CGG | + | chr3_3:48499281-48499300 | None:intergenic | 45.0% |
| TGAAGGTTACCTGCTATAGC+AGG | - | chr3_3:48499483-48499502 | Msa0455540:CDS | 45.0% | |
| ACAGGTTAACCTGCTATAGC+AGG | + | chr3_3:48499495-48499514 | None:intergenic | 45.0% | |
| GTGTTTCAGCTATGTACAGC+TGG | + | chr3_3:48499570-48499589 | None:intergenic | 45.0% | |
| GTGTTTCAGCTATGTACAGC+TGG | + | chr3_3:48499570-48499589 | None:intergenic | 45.0% | |
| !! | AATTGGTGTCAGCACCAAAG+TGG | - | chr3_3:48499844-48499863 | Msa0455540:intron | 45.0% |
| TTGGATAACATGGTGTGGAC+AGG | + | chr3_3:48499871-48499890 | None:intergenic | 45.0% | |
| GCAATTTCCCCCCTAAAAAC+TGG | - | chr3_3:48499934-48499953 | Msa0455540:intron | 45.0% | |
| !! | ATGGGCTTCCAGTTTTTAGG+GGG | + | chr3_3:48499945-48499964 | None:intergenic | 45.0% |
| !! | CGAATGGGCTTCCAGTTTTT+AGG | + | chr3_3:48499948-48499967 | None:intergenic | 45.0% |
| GTGACAACCATTGTGTCGAA+TGG | + | chr3_3:48499964-48499983 | None:intergenic | 45.0% | |
| CGTTGAATCTCAGACTCGAA+CGG | + | chr3_3:48500052-48500071 | None:intergenic | 45.0% | |
| ! | CGTTCGAGTCTGAGATTCAA+CGG | - | chr3_3:48500050-48500069 | Msa0455540:CDS | 45.0% |
| ! | GTCTGAGATTCAACGGTTGA+CGG | - | chr3_3:48500057-48500076 | Msa0455540:CDS | 45.0% |
| ! | TCTGAGATTCAACGGTTGAC+GGG | - | chr3_3:48500058-48500077 | Msa0455540:CDS | 45.0% |
| ! | ACGGCTTGCTTCAAAATGGA+GGG | - | chr3_3:48500086-48500105 | Msa0455540:CDS | 45.0% |
| GTTAAGAAGTTCACATGGCG+GGG | + | chr3_3:48500131-48500150 | None:intergenic | 45.0% | |
| ! | ACTTCTTAACTTGAGGGAGG+GGG | - | chr3_3:48500141-48500160 | Msa0455540:CDS | 45.0% |
| GAAAGGATGGTTACCGAACA+CGG | - | chr3_3:48500257-48500276 | Msa0455540:intron | 45.0% | |
| AAAGGATGGTTACCGAACAC+GGG | - | chr3_3:48500258-48500277 | Msa0455540:intron | 45.0% | |
| ! | TCTTTGAAGATGCAGGGAAC+TGG | - | chr3_3:48500368-48500387 | Msa0455540:intron | 45.0% |
| GGAAAATTTCCCGACAACAG+TGG | - | chr3_3:48500448-48500467 | Msa0455540:intron | 45.0% | |
| GCCCAGTTATGCAGTGATTT+AGG | - | chr3_3:48500812-48500831 | Msa0455540:intron | 45.0% | |
| CGTCTCTTGAGGTTATAGCT+TGG | + | chr3_3:48500980-48500999 | None:intergenic | 45.0% | |
| TTTGTTGGTACCGTCTCTTG+AGG | + | chr3_3:48500991-48501010 | None:intergenic | 45.0% | |
| GGGATTTCCTTCTAACCTGA+AGG | - | chr3_3:48501039-48501058 | Msa0455540:intron | 45.0% | |
| ! | TCACTTGCCTTCAGGTTAGA+AGG | + | chr3_3:48501049-48501068 | None:intergenic | 45.0% |
| ! | CCTTCCAAAAGTTTTCCCAG+CGG | + | chr3_3:48501241-48501260 | None:intergenic | 45.0% |
| !! | CTGGGAAAACTTTTGGAAGG+TGG | - | chr3_3:48501241-48501260 | Msa0455540:intron | 45.0% |
| ! | TCTGTTTGCTGATCAGGCAA+AGG | - | chr3_3:48501327-48501346 | Msa0455540:CDS | 45.0% |
| CTTCGTTCGGGGTTTAGAAG+AGG | + | chr3_3:48494278-48494297 | None:intergenic | 50.0% | |
| TCATGCGTGTTCTTCGTTCG+GGG | + | chr3_3:48494289-48494308 | None:intergenic | 50.0% | |
| TGTGGCGGTTGAAGAGGTTA+GGG | + | chr3_3:48494363-48494382 | None:intergenic | 50.0% | |
| TTGTGGCGGTTGAAGAGGTT+AGG | + | chr3_3:48494364-48494383 | None:intergenic | 50.0% | |
| TGATTCACATTGCGGTGGTG+TGG | + | chr3_3:48494390-48494409 | None:intergenic | 50.0% | |
| !! | AACGCTGATTCACATTGCGG+TGG | + | chr3_3:48494395-48494414 | None:intergenic | 50.0% |
| TTGTAACTCCGGTCATCTCG+AGG | + | chr3_3:48494508-48494527 | None:intergenic | 50.0% | |
| CCAGGGAGAACTTGTAACTC+CGG | + | chr3_3:48494519-48494538 | None:intergenic | 50.0% | |
| GAACATCGGAGCGATCAAAC+TGG | + | chr3_3:48494553-48494572 | None:intergenic | 50.0% | |
| CTCCGATGTTCGGTATCTCA+AGG | - | chr3_3:48494562-48494581 | Msa0455540:CDS | 50.0% | |
| AGGTTCGCCGTTGTTCAGTT+CGG | - | chr3_3:48494602-48494621 | Msa0455540:CDS | 50.0% | |
| TTCGTCTAACCAGTCCTTCG+TGG | - | chr3_3:48494646-48494665 | Msa0455540:CDS | 50.0% | |
| GTGTTACGGATATGCCACGA+AGG | + | chr3_3:48494663-48494682 | None:intergenic | 50.0% | |
| AGAGAGAGGATGTTGGAAGG+AGG | - | chr3_3:48495535-48495554 | Msa0455540:intron | 50.0% | |
| TTTCCACGTCAGGAGCTTTC+TGG | - | chr3_3:48495818-48495837 | Msa0455540:intron | 50.0% | |
| AAACCAGAAAGCTCCTGACG+TGG | + | chr3_3:48495824-48495843 | None:intergenic | 50.0% | |
| !!! | CGTCAGGAGCTTTCTGGTTT+TGG | - | chr3_3:48495824-48495843 | Msa0455540:intron | 50.0% |
| TCTCTGCCAGACTACTTCGA+TGG | - | chr3_3:48495862-48495881 | Msa0455540:intron | 50.0% | |
| CATCCAGCTCTCAAGCTTGA+TGG | - | chr3_3:48496592-48496611 | Msa0455540:intron | 50.0% | |
| !!! | TTTTCTGGAGTCTCGGGAAG+AGG | + | chr3_3:48497498-48497517 | None:intergenic | 50.0% |
| TTGGAGCCAGCAGCAATTTG+TGG | + | chr3_3:48497654-48497673 | None:intergenic | 50.0% | |
| ACACGGAGACGACAAATCAG+AGG | - | chr3_3:48498313-48498332 | Msa0455540:CDS | 50.0% | |
| ! | TACCTTCGTCTTCGTCGACT+TGG | + | chr3_3:48498358-48498377 | None:intergenic | 50.0% |
| ! | AAGGTGAGTTGAGGTCGACA+GGG | - | chr3_3:48498412-48498431 | Msa0455540:CDS | 50.0% |
| !! | AGTTGATGGAGGAAGGCGAT+AGG | - | chr3_3:48498450-48498469 | Msa0455540:CDS | 50.0% |
| ! | GTTGATGGAGGAAGGCGATA+GGG | - | chr3_3:48498451-48498470 | Msa0455540:CDS | 50.0% |
| GATAGGGAGGGAAAGTCACA+GGG | - | chr3_3:48498467-48498486 | Msa0455540:CDS | 50.0% | |
| GCAAAGATGTTCACTGCGAC+AGG | + | chr3_3:48498625-48498644 | None:intergenic | 50.0% | |
| GTCGCAGTGAACATCTTTGC+TGG | - | chr3_3:48498625-48498644 | Msa0455540:CDS | 50.0% | |
| ! | GACTGGTTAGGATCTGGTGT+TGG | + | chr3_3:48499162-48499181 | None:intergenic | 50.0% |
| ! | CTCGTGAGTCATGACTGGTT+AGG | + | chr3_3:48499174-48499193 | None:intergenic | 50.0% |
| AGAGTCACCAGGAGCCAATT+TGG | - | chr3_3:48499205-48499224 | Msa0455540:intron | 50.0% | |
| TTGGCTACTGTAGTGTGCTC+AGG | - | chr3_3:48499351-48499370 | Msa0455540:CDS | 50.0% | |
| !! | TGGGCTTCCAGTTTTTAGGG+GGG | + | chr3_3:48499944-48499963 | None:intergenic | 50.0% |
| TGGAAGCCCATTCGACACAA+TGG | - | chr3_3:48499954-48499973 | Msa0455540:intron | 50.0% | |
| ! | CACGGCTTGCTTCAAAATGG+AGG | - | chr3_3:48500085-48500104 | Msa0455540:CDS | 50.0% |
| ! | CGGCTTGCTTCAAAATGGAG+GGG | - | chr3_3:48500087-48500106 | Msa0455540:CDS | 50.0% |
| ! | GGCTTGCTTCAAAATGGAGG+GGG | - | chr3_3:48500088-48500107 | Msa0455540:CDS | 50.0% |
| ! | GTTCACATGGCGGGGATATA+TGG | + | chr3_3:48500123-48500142 | None:intergenic | 50.0% |
| ! | CTTCTTAACTTGAGGGAGGG+GGG | - | chr3_3:48500142-48500161 | Msa0455540:CDS | 50.0% |
| AGGGGGATGATGTGCATATG+CGG | - | chr3_3:48500227-48500246 | Msa0455540:intron | 50.0% | |
| GCATATGCGGCGTTTGTGAA+AGG | - | chr3_3:48500240-48500259 | Msa0455540:intron | 50.0% | |
| ATGCGGCGTTTGTGAAAGGA+TGG | - | chr3_3:48500244-48500263 | Msa0455540:intron | 50.0% | |
| GTGAAGTAGACCGTGGAAGA+GGG | - | chr3_3:48500280-48500299 | Msa0455540:intron | 50.0% | |
| TGAAGTAGACCGTGGAAGAG+GGG | - | chr3_3:48500281-48500300 | Msa0455540:intron | 50.0% | |
| AAGAGGGGTCATGGGAAGAT+GGG | - | chr3_3:48500296-48500315 | Msa0455540:intron | 50.0% | |
| !! | GTCATGGGAAGATGGGTTGA+TGG | - | chr3_3:48500303-48500322 | Msa0455540:intron | 50.0% |
| !! | ATGGGAAGATGGGTTGATGG+AGG | - | chr3_3:48500306-48500325 | Msa0455540:intron | 50.0% |
| ! | GAGGTACCATGGTGGTGAAA+TGG | - | chr3_3:48500332-48500351 | Msa0455540:intron | 50.0% |
| ACGCTACCATTTCACCACCA+TGG | + | chr3_3:48500341-48500360 | None:intergenic | 50.0% | |
| ! | TGGTTTTCTCCCCCATCAGT+GGG | + | chr3_3:48500415-48500434 | None:intergenic | 50.0% |
| GAGAAAACCACCACAAGGGA+GGG | - | chr3_3:48500425-48500444 | Msa0455540:intron | 50.0% | |
| AGAAAACCACCACAAGGGAG+GGG | - | chr3_3:48500426-48500445 | Msa0455540:intron | 50.0% | |
| ! | GAAATTTTCCCCCTCCCTTG+TGG | + | chr3_3:48500438-48500457 | None:intergenic | 50.0% |
| GAATTTGCAGATCGTCCAGC+TGG | - | chr3_3:48500732-48500751 | Msa0455540:intron | 50.0% | |
| CTCGTACTTCACTTGCCTTC+AGG | + | chr3_3:48501057-48501076 | None:intergenic | 50.0% | |
| ACACTGCTGTTGCATCCAAG+TGG | + | chr3_3:48501126-48501145 | None:intergenic | 50.0% | |
| AGCGGATGCAAAACCGAGAT+TGG | + | chr3_3:48501223-48501242 | None:intergenic | 50.0% | |
| ! | AATCTCGGTTTTGCATCCGC+TGG | - | chr3_3:48501222-48501241 | Msa0455540:intron | 50.0% |
| ! | ATCTCGGTTTTGCATCCGCT+GGG | - | chr3_3:48501223-48501242 | Msa0455540:intron | 50.0% |
| ! | GCATCCGCTGGGAAAACTTT+TGG | - | chr3_3:48501234-48501253 | Msa0455540:intron | 50.0% |
| ! | CCGCTGGGAAAACTTTTGGA+AGG | - | chr3_3:48501238-48501257 | Msa0455540:intron | 50.0% |
| CAAAGGCAGTTGGCATGAAG+TGG | - | chr3_3:48501344-48501363 | Msa0455540:CDS | 50.0% | |
| GGTTGTTGTGGCGGTTGAAG+AGG | + | chr3_3:48494369-48494388 | None:intergenic | 55.0% | |
| TTGCGGTGGTGTGGTTGTTG+TGG | + | chr3_3:48494381-48494400 | None:intergenic | 55.0% | |
| AATCGTCGTTAGCGGAGCTC+CGG | - | chr3_3:48494447-48494466 | Msa0455540:three_prime_UTR | 55.0% | |
| CCGGAGTTACAAGTTCTCCC+TGG | - | chr3_3:48494516-48494535 | Msa0455540:CDS | 55.0% | |
| AGGTTAGAGACTCCGCCAGT+AGG | - | chr3_3:48494582-48494601 | Msa0455540:CDS | 55.0% | |
| AACAACGGCGAACCTACTGG+CGG | + | chr3_3:48494597-48494616 | None:intergenic | 55.0% | |
| CTGAACAACGGCGAACCTAC+TGG | + | chr3_3:48494600-48494619 | None:intergenic | 55.0% | |
| TCGGCGTTTGTCCTTTCCGA+TGG | - | chr3_3:48494621-48494640 | Msa0455540:CDS | 55.0% | |
| CGGCGTTTGTCCTTTCCGAT+GGG | - | chr3_3:48494622-48494641 | Msa0455540:CDS | 55.0% | |
| ACGGATATGCCACGAAGGAC+TGG | + | chr3_3:48494658-48494677 | None:intergenic | 55.0% | |
| GCTGTAAAAGGTCCTGGCCA+TGG | - | chr3_3:48496030-48496049 | Msa0455540:intron | 55.0% | |
| AAGGTCCTGGCCATGGTAAC+TGG | - | chr3_3:48496037-48496056 | Msa0455540:intron | 55.0% | |
| CTAGTCCAGTTACCATGGCC+AGG | + | chr3_3:48496045-48496064 | None:intergenic | 55.0% | |
| ! | CCAGGCTAGTCCAGTTACCA+TGG | + | chr3_3:48496050-48496069 | None:intergenic | 55.0% |
| !! | CCATGGTAACTGGACTAGCC+TGG | - | chr3_3:48496047-48496066 | Msa0455540:intron | 55.0% |
| GGCGAAATCCAACTGCAGCT+TGG | + | chr3_3:48497301-48497320 | None:intergenic | 55.0% | |
| GACCAAGTCGACGAAGACGA+AGG | - | chr3_3:48498353-48498372 | Msa0455540:CDS | 55.0% | |
| ! | GAAGGTGAGTTGAGGTCGAC+AGG | - | chr3_3:48498411-48498430 | Msa0455540:CDS | 55.0% |
| ATGGAGGAAGGCGATAGGGA+GGG | - | chr3_3:48498455-48498474 | Msa0455540:CDS | 55.0% | |
| CGATAGGGAGGGAAAGTCAC+AGG | - | chr3_3:48498466-48498485 | Msa0455540:CDS | 55.0% | |
| GCAAACGAAGATGGCAAGGG+AGG | + | chr3_3:48498681-48498700 | None:intergenic | 55.0% | |
| ! | AGTCGTGCCAAATTGGCTCC+TGG | + | chr3_3:48499215-48499234 | None:intergenic | 55.0% |
| TGGTGTGGACAGGACCACTT+TGG | + | chr3_3:48499861-48499880 | None:intergenic | 55.0% | |
| ! | CAACGGTTGACGGGCAAACA+CGG | - | chr3_3:48500067-48500086 | Msa0455540:CDS | 55.0% |
| ! | TTAACTTGAGGGAGGGGGGT+AGG | - | chr3_3:48500146-48500165 | Msa0455540:CDS | 55.0% |
| TAACTTGAGGGAGGGGGGTA+GGG | - | chr3_3:48500147-48500166 | Msa0455540:CDS | 55.0% | |
| CTGTCAAGCTGGAGACCTAG+CGG | - | chr3_3:48500187-48500206 | Msa0455540:intron | 55.0% | |
| ! | AAGCTGGAGACCTAGCGGAT+GGG | - | chr3_3:48500192-48500211 | Msa0455540:intron | 55.0% |
| CGGTCTACTTCACCCGTGTT+CGG | + | chr3_3:48500273-48500292 | None:intergenic | 55.0% | |
| AACACGGGTGAAGTAGACCG+TGG | - | chr3_3:48500273-48500292 | Msa0455540:intron | 55.0% | |
| GGTGAAGTAGACCGTGGAAG+AGG | - | chr3_3:48500279-48500298 | Msa0455540:intron | 55.0% | |
| TTCCCATGACCCCTCTTCCA+CGG | + | chr3_3:48500293-48500312 | None:intergenic | 55.0% | |
| GAAGAGGGGTCATGGGAAGA+TGG | - | chr3_3:48500295-48500314 | Msa0455540:intron | 55.0% | |
| !! | GATGGGTTGATGGAGGAGTG+AGG | - | chr3_3:48500313-48500332 | Msa0455540:intron | 55.0% |
| ! | GATGGAGGAGTGAGGTACCA+TGG | - | chr3_3:48500321-48500340 | Msa0455540:intron | 55.0% |
| GAAGATGCAGGGAACTGGAG+AGG | - | chr3_3:48500373-48500392 | Msa0455540:intron | 55.0% | |
| ! | GTGGTTTTCTCCCCCATCAG+TGG | + | chr3_3:48500416-48500435 | None:intergenic | 55.0% |
| TGGGGGAGAAAACCACCACA+AGG | - | chr3_3:48500420-48500439 | Msa0455540:intron | 55.0% | |
| GGGGGAGAAAACCACCACAA+GGG | - | chr3_3:48500421-48500440 | Msa0455540:intron | 55.0% | |
| GGAGAAAACCACCACAAGGG+AGG | - | chr3_3:48500424-48500443 | Msa0455540:intron | 55.0% | |
| GAAAACCACCACAAGGGAGG+GGG | - | chr3_3:48500427-48500446 | Msa0455540:intron | 55.0% | |
| ! | ATTTTCCCCCTCCCTTGTGG+TGG | + | chr3_3:48500435-48500454 | None:intergenic | 55.0% |
| AGATCGTCCAGCTGGAATCC+TGG | - | chr3_3:48500740-48500759 | Msa0455540:intron | 55.0% | |
| GAATCCTGGAGGCAAGCATG+AGG | - | chr3_3:48500754-48500773 | Msa0455540:intron | 55.0% | |
| GCTGATCAGGCAAAGGCAGT+TGG | - | chr3_3:48501334-48501353 | Msa0455540:CDS | 55.0% | |
| CGGTGGTGTGGTTGTTGTGG+CGG | + | chr3_3:48494378-48494397 | None:intergenic | 60.0% | |
| ! | GCAACGGTGACGGTCTTCGA+TGG | + | chr3_3:48494419-48494438 | None:intergenic | 60.0% |
| CGAAGTCCGACGATCGGACA+TGG | + | chr3_3:48494475-48494494 | None:intergenic | 60.0% | |
| TGGCGACGAAGTCCGACGAT+CGG | + | chr3_3:48494481-48494500 | None:intergenic | 60.0% | |
| GCCATCGACCTCGAGATGAC+CGG | - | chr3_3:48494497-48494516 | Msa0455540:exon | 60.0% | |
| TCCGGTCATCTCGAGGTCGA+TGG | + | chr3_3:48494501-48494520 | None:intergenic | 60.0% | |
| CGGCGATGGAAGGTGAGTTG+AGG | - | chr3_3:48498403-48498422 | Msa0455540:CDS | 60.0% | |
| GAGTTGAGGTCGACAGGGCA+TGG | - | chr3_3:48498417-48498436 | Msa0455540:CDS | 60.0% | |
| GATGGAGGAAGGCGATAGGG+AGG | - | chr3_3:48498454-48498473 | Msa0455540:CDS | 60.0% | |
| AACTTGAGGGAGGGGGGTAG+GGG | - | chr3_3:48500148-48500167 | Msa0455540:CDS | 60.0% | |
| GCTTGACAGAGCTCCCCAAC+CGG | + | chr3_3:48500176-48500195 | None:intergenic | 60.0% | |
| GTTGGGGAGCTCTGTCAAGC+TGG | - | chr3_3:48500176-48500195 | Msa0455540:intron | 60.0% | |
| CAAGCTGGAGACCTAGCGGA+TGG | - | chr3_3:48500191-48500210 | Msa0455540:intron | 60.0% | |
| CAATCTCGCTCCCATCCGCT+AGG | + | chr3_3:48500205-48500224 | None:intergenic | 60.0% | |
| GGATGGGAGCGAGATTGCGA+GGG | - | chr3_3:48500208-48500227 | Msa0455540:intron | 60.0% | |
| GATGGGAGCGAGATTGCGAG+GGG | - | chr3_3:48500209-48500228 | Msa0455540:intron | 60.0% | |
| ATGGGAGCGAGATTGCGAGG+GGG | - | chr3_3:48500210-48500229 | Msa0455540:intron | 60.0% | |
| AGACCGTGGAAGAGGGGTCA+TGG | - | chr3_3:48500287-48500306 | Msa0455540:intron | 60.0% | |
| GACCGTGGAAGAGGGGTCAT+GGG | - | chr3_3:48500288-48500307 | Msa0455540:intron | 60.0% | |
| ! | GGAGGAGTGAGGTACCATGG+TGG | - | chr3_3:48500324-48500343 | Msa0455540:intron | 60.0% |
| TCGTCCAGCTGGAATCCTGG+AGG | - | chr3_3:48500743-48500762 | Msa0455540:intron | 60.0% | |
| CTTGCCTCCAGGATTCCAGC+TGG | + | chr3_3:48500750-48500769 | None:intergenic | 60.0% | |
| TTCTGCGCCACAGGAATGGG+CGG | + | chr3_3:48501526-48501545 | None:intergenic | 60.0% | |
| GGCTTCTGCGCCACAGGAAT+GGG | + | chr3_3:48501529-48501548 | None:intergenic | 60.0% | |
| TGGCTTCTGCGCCACAGGAA+TGG | + | chr3_3:48501530-48501549 | None:intergenic | 60.0% | |
| ! | CAAGTTGGCTTCTGCGCCAC+AGG | + | chr3_3:48501535-48501554 | None:intergenic | 60.0% |
| CCGACGATCGGACATGGTGC+CGG | + | chr3_3:48494469-48494488 | None:intergenic | 65.0% | |
| CCGGCACCATGTCCGATCGT+CGG | - | chr3_3:48494466-48494485 | Msa0455540:three_prime_UTR | 65.0% | |
| CGGATGGGAGCGAGATTGCG+AGG | - | chr3_3:48500207-48500226 | Msa0455540:intron | 65.0% | |
| ATCAGTGGGAGCGAGGCTGC+TGG | + | chr3_3:48500401-48500420 | None:intergenic | 65.0% | |
| AGCAGCCTCGCTCCCACTGA+TGG | - | chr3_3:48500400-48500419 | Msa0455540:intron | 65.0% | |
| GCAGCCTCGCTCCCACTGAT+GGG | - | chr3_3:48500401-48500420 | Msa0455540:intron | 65.0% | |
| CAGCCTCGCTCCCACTGATG+GGG | - | chr3_3:48500402-48500421 | Msa0455540:intron | 65.0% | |
| AGCCTCGCTCCCACTGATGG+GGG | - | chr3_3:48500403-48500422 | Msa0455540:intron | 65.0% | |
| CCTGCCTCATGCTTGCCTCC+AGG | + | chr3_3:48500761-48500780 | None:intergenic | 65.0% | |
| CCTGGAGGCAAGCATGAGGC+AGG | - | chr3_3:48500758-48500777 | Msa0455540:intron | 65.0% | |
| AGGCAAGCCGCCCATTCCTG+TGG | - | chr3_3:48501516-48501535 | Msa0455540:CDS | 65.0% | |
| CTCCCCCATCAGTGGGAGCG+AGG | + | chr3_3:48500408-48500427 | None:intergenic | 70.0% | |
| AGGGAGGGGGGTAGGGGCTC+CGG | - | chr3_3:48500154-48500173 | Msa0455540:CDS | 75.0% | |
| AGGGGGGTAGGGGCTCCGGT+TGG | - | chr3_3:48500158-48500177 | Msa0455540:CDS | 75.0% | |
| GGGGGGTAGGGGCTCCGGTT+GGG | - | chr3_3:48500159-48500178 | Msa0455540:CDS | 75.0% | |
| GGGGGTAGGGGCTCCGGTTG+GGG | - | chr3_3:48500160-48500179 | Msa0455540:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 48494252 | 48501728 | 48494252 | ID=Msa0455540;Name=Msa0455540 |
| chr3_3 | mRNA | 48494252 | 48501728 | 48494252 | ID=Msa0455540-mRNA-1;Parent=Msa0455540;Name=Msa0455540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=53|1|1|1|0.66|0.57|7|263|687 |
| chr3_3 | exon | 48494252 | 48495238 | 48494252 | ID=Msa0455540-mRNA-1:exon:9059;Parent=Msa0455540-mRNA-1 |
| chr3_3 | exon | 48498247 | 48498517 | 48498247 | ID=Msa0455540-mRNA-1:exon:9058;Parent=Msa0455540-mRNA-1 |
| chr3_3 | exon | 48498600 | 48498726 | 48498600 | ID=Msa0455540-mRNA-1:exon:9057;Parent=Msa0455540-mRNA-1 |
| chr3_3 | exon | 48499040 | 48499153 | 48499040 | ID=Msa0455540-mRNA-1:exon:9056;Parent=Msa0455540-mRNA-1 |
| chr3_3 | exon | 48499332 | 48499657 | 48499332 | ID=Msa0455540-mRNA-1:exon:9055;Parent=Msa0455540-mRNA-1 |
| chr3_3 | exon | 48500048 | 48500178 | 48500048 | ID=Msa0455540-mRNA-1:exon:9054;Parent=Msa0455540-mRNA-1 |
| chr3_3 | exon | 48501305 | 48501728 | 48501305 | ID=Msa0455540-mRNA-1:exon:9053;Parent=Msa0455540-mRNA-1 |
| chr3_3 | five_prime_UTR | 48501676 | 48501728 | 48501676 | ID=Msa0455540-mRNA-1:five_prime_utr;Parent=Msa0455540-mRNA-1 |
| chr3_3 | CDS | 48501305 | 48501675 | 48501305 | ID=Msa0455540-mRNA-1:cds;Parent=Msa0455540-mRNA-1 |
| chr3_3 | CDS | 48500048 | 48500178 | 48500048 | ID=Msa0455540-mRNA-1:cds;Parent=Msa0455540-mRNA-1 |
| chr3_3 | CDS | 48499332 | 48499657 | 48499332 | ID=Msa0455540-mRNA-1:cds;Parent=Msa0455540-mRNA-1 |
| chr3_3 | CDS | 48499040 | 48499153 | 48499040 | ID=Msa0455540-mRNA-1:cds;Parent=Msa0455540-mRNA-1 |
| chr3_3 | CDS | 48498600 | 48498726 | 48498600 | ID=Msa0455540-mRNA-1:cds;Parent=Msa0455540-mRNA-1 |
| chr3_3 | CDS | 48498247 | 48498517 | 48498247 | ID=Msa0455540-mRNA-1:cds;Parent=Msa0455540-mRNA-1 |
| chr3_3 | CDS | 48494515 | 48495238 | 48494515 | ID=Msa0455540-mRNA-1:cds;Parent=Msa0455540-mRNA-1 |
| chr3_3 | three_prime_UTR | 48494252 | 48494514 | 48494252 | ID=Msa0455540-mRNA-1:three_prime_utr;Parent=Msa0455540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
