AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0499890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499890 MtrunA17_Chr3g0097801 82.593 540 28 5 1 477 1 537 0.0 867
Msa0499890 MtrunA17_Chr2g0279961 32.057 418 229 11 90 460 179 588 1.67e-43 162
Msa0499890 MtrunA17_Chr3g0130801 31.591 421 234 16 78 455 239 648 1.93e-36 142
Msa0499890 MtrunA17_Chr8g0384851 30.144 418 230 10 85 454 181 584 6.03e-35 137
Msa0499890 MtrunA17_Chr8g0377701 28.302 424 260 13 1 409 13 407 5.09e-34 134
Msa0499890 MtrunA17_Chr8g0377681 33.333 297 179 7 18 304 18 305 5.13e-33 131
Msa0499890 MtrunA17_Chr4g0037521 27.883 477 285 15 37 460 29 499 1.30e-31 127
Msa0499890 MtrunA17_Chr8g0377651 31.408 277 178 5 46 313 44 317 1.55e-30 124
Msa0499890 MtrunA17_Chr8g0377641 27.586 406 258 12 17 409 21 403 3.23e-30 123
Msa0499890 MtrunA17_Chr8g0377691 31.833 311 193 7 13 313 16 317 3.88e-30 122
Msa0499890 MtrunA17_Chr8g0385461 26.128 421 250 14 43 434 163 551 1.00e-28 119
Msa0499890 MtrunA17_Chr1g0191741 45.536 112 58 1 141 249 63 174 4.68e-20 92.4
Msa0499890 MtrunA17_Chr4g0050371 46.078 102 52 1 151 249 119 220 3.63e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499890 AT3G25660.1 57.356 537 162 8 3 474 1 535 0.0 545
Msa0499890 AT5G64440.1 30.607 428 232 14 85 460 175 589 1.09e-39 151
Msa0499890 AT5G07360.1 26.478 423 246 16 43 434 205 593 2.55e-26 112
Msa0499890 AT5G07360.3 26.478 423 246 16 43 434 205 593 2.55e-26 112
Msa0499890 AT4G34880.2 28.085 470 272 17 43 460 45 500 2.01e-25 109
Msa0499890 AT5G07360.2 26.478 423 239 17 43 434 205 586 1.08e-24 108
Msa0499890 AT1G08980.1 44.444 117 62 1 141 254 64 180 2.21e-19 90.9
Msa0499890 AT5G09420.1 42.105 114 63 1 141 251 107 220 5.55e-16 80.9
Msa0499890 AT3G17970.2 39.450 109 63 1 144 249 97 205 4.48e-13 72.0
Msa0499890 AT3G17970.1 40.385 104 59 1 149 249 102 205 5.11e-13 71.6

Find 196 sgRNAs with CRISPR-Local

Find 607 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGAAGCCTCTGCATTTC+AGG 0.140605 3_4:-39354121 Msa0499890:intron
CCTTCAGCTGCTTATAAAAT+TGG 0.189323 3_4:-39349796 Msa0499890:intron
GACATTACAGGCAAATATTT+TGG 0.199151 3_4:-39346995 Msa0499890:three_prime_UTR
CCAACCCGTGGGATGTTTCT+AGG 0.236054 3_4:-39351600 Msa0499890:CDS
TACCAAATAGAAGGAAAATT+TGG 0.254997 3_4:-39347022 Msa0499890:three_prime_UTR
GGTTCATCGGTCGCTGATGC+TGG 0.256956 3_4:-39351376 Msa0499890:CDS
CTTGAAGCTATTCCTTATAA+TGG 0.275796 3_4:+39349861 None:intergenic
TGAAACTGATAAATTATTTA+CGG 0.279912 3_4:+39347090 None:intergenic
CTTGATGCCATTGGCTGCTT+TGG 0.287138 3_4:-39351397 Msa0499890:CDS
TGGCTGAAGCAGGTATGTTT+AGG 0.296796 3_4:-39347056 Msa0499890:three_prime_UTR
CCTGTTGGCTTGCAAATGAT+TGG 0.297271 3_4:-39348718 Msa0499890:CDS
TGTTGTTGGGAAGACGAATA+TGG 0.330954 3_4:-39354166 Msa0499890:CDS
TGGTCACACATGATTGAATC+TGG 0.337048 3_4:-39346975 Msa0499890:three_prime_UTR
AGCTGATAGCGTTGAATAAC+AGG 0.342334 3_4:-39347142 Msa0499890:exon
TGGTGTTCTTGTTGCTGTTA+AGG 0.344765 3_4:-39354301 Msa0499890:CDS
TATGGGCGCGTCTCAAGATT+TGG 0.346456 3_4:-39351442 Msa0499890:CDS
CCCTTGAAAGGACTGAGAAT+TGG 0.350069 3_4:-39351019 Msa0499890:CDS
TAGTTGAAAGAAGATATATT+AGG 0.354417 3_4:+39354686 None:intergenic
GAGGAAATTGGTCCTCTTGC+TGG 0.355923 3_4:-39354321 Msa0499890:CDS
GGGATTGGTCGGAAGGGAGG+TGG 0.356126 3_4:+39354388 None:intergenic
CCATGTGGATTTATTGAGAA+TGG 0.359058 3_4:-39348754 Msa0499890:CDS
TGATGCTGCTTCACACTTTG+AGG 0.361289 3_4:-39350939 Msa0499890:CDS
CATTGGCTGCTTTGGTTCAT+CGG 0.365093 3_4:-39351389 Msa0499890:CDS
GCTTCACACTTTGAGGCATT+AGG 0.369129 3_4:-39350932 Msa0499890:CDS
ATTCTCCTCCATGCAATTGC+TGG 0.372958 3_4:-39351352 Msa0499890:CDS
AGTTGAAAGAAGATATATTA+GGG 0.375174 3_4:+39354687 None:intergenic
ATTGGTCGGAAGGGAGGTGG+AGG 0.381354 3_4:+39354391 None:intergenic
GGTGGAGGAAGGAACGGAGG+TGG 0.388259 3_4:+39354406 None:intergenic
AAGACGAATATGGATGAGTT+TGG 0.396095 3_4:-39354156 Msa0499890:CDS
ATCGCTGCGGGCGAGGAAAT+TGG 0.401828 3_4:-39354333 Msa0499890:CDS
CGGTCAGACGGAGGCGGGTG+AGG 0.402657 3_4:+39354433 None:intergenic
GGGGTGCGGTGGTAGGTTGG+GGG 0.403036 3_4:+39354529 None:intergenic
AACAGGTGAGAACCATTATA+AGG 0.404504 3_4:-39349873 Msa0499890:intron
AATTGGGTGGGATTGTTGTT+GGG 0.407014 3_4:-39354179 Msa0499890:CDS
GAATTGGGTGGGATTGTTGT+TGG 0.410650 3_4:-39354180 Msa0499890:CDS
ACCAATTCTCAGTCCTTTCA+AGG 0.410994 3_4:+39351018 None:intergenic
AGAGAGTGGAACGTGGGGTT+TGG 0.412341 3_4:+39354604 None:intergenic
GAAGGAACGGAGGTGGGGTT+CGG 0.415482 3_4:+39354413 None:intergenic
GGGGTTCGGTCAGACGGAGG+CGG 0.416687 3_4:+39354427 None:intergenic
GTAGGTTTGAAGCCAACATA+TGG 0.418336 3_4:-39351460 Msa0499890:intron
AACTGCAGCTGCCGATCCTC+CGG 0.421581 3_4:+39351561 None:intergenic
GTTCAGTGTTACCAAATAGA+AGG 0.422874 3_4:-39347031 Msa0499890:three_prime_UTR
GGCTGAAGCAGGTATGTTTA+GGG 0.424828 3_4:-39347055 Msa0499890:three_prime_UTR
GTGCCTGAGCGAGGAGGGAT+TGG 0.432715 3_4:+39354373 None:intergenic
GTGGAGGAAGGAACGGAGGT+GGG 0.435354 3_4:+39354407 None:intergenic
TGGTGCTTGTGGATGATGGA+AGG 0.435633 3_4:+39354571 None:intergenic
GATCCTCCGGATGATCCTCC+TGG 0.440465 3_4:+39351574 None:intergenic
TCAAAATGAGATAGAAAGTT+GGG 0.443630 3_4:+39351067 None:intergenic
GTGAAGAGAGTTAAGGAATT+GGG 0.443878 3_4:-39354195 Msa0499890:CDS
GGAGGTGGAGGAAGGAACGG+AGG 0.445202 3_4:+39354403 None:intergenic
GGGGTGTGTGAGAGTAGCTT+GGG 0.445406 3_4:+39354548 None:intergenic
GTTCATCGGTCGCTGATGCT+GGG 0.451053 3_4:-39351375 Msa0499890:CDS
CGAGGATACTTGAGGGTTAT+CGG 0.452203 3_4:-39354239 Msa0499890:CDS
GGAGGGATTGGTCGGAAGGG+AGG 0.457372 3_4:+39354385 None:intergenic
TCAGACGGAGGCGGGTGAGG+TGG 0.463017 3_4:+39354436 None:intergenic
CCAATCATTTGCAAGCCAAC+AGG 0.464434 3_4:+39348718 None:intergenic
GGTGAAGAGAGTTAAGGAAT+TGG 0.465436 3_4:-39354196 Msa0499890:CDS
GGGACATATGCCCTTTCAGC+TGG 0.466577 3_4:-39350287 Msa0499890:CDS
GAAAATGCGGTGGCTGAAGC+AGG 0.466998 3_4:-39347066 Msa0499890:three_prime_UTR
TAGGTAAATGTCAACCTAGC+TGG 0.467203 3_4:-39348796 Msa0499890:CDS
TAAGCAATCATTCTACATCT+TGG 0.468377 3_4:-39347117 Msa0499890:three_prime_UTR
AAGGGTGAGGATTTGAGAGG+GGG 0.471284 3_4:+39354509 None:intergenic
GGGTTCGGTCAGACGGAGGC+GGG 0.475235 3_4:+39354428 None:intergenic
TTCACCGCCGTCGCATCAAA+CGG 0.475456 3_4:+39354213 None:intergenic
GTCAAAATGAGATAGAAAGT+TGG 0.475595 3_4:+39351066 None:intergenic
GTATCGTTGGGAAGTGATAC+TGG 0.476953 3_4:-39351520 Msa0499890:CDS
CGGCAGCTGCAGTTTCTGCC+AGG 0.482175 3_4:-39351552 Msa0499890:CDS
GGAACGTGGGGTTTGGAGTG+TGG 0.485069 3_4:+39354611 None:intergenic
CGACCAATCCCTCCTCGCTC+AGG 0.485149 3_4:-39354376 Msa0499890:CDS
AATGAGGTCGGTTGCGGAGA+GGG 0.486002 3_4:+39354464 None:intergenic
CAACGATACAACACACTGCC+TGG 0.490331 3_4:+39351534 None:intergenic
TGGGATGTTTCTAGGGTGCC+AGG 0.494163 3_4:-39351592 Msa0499890:CDS
GAATATGGATGAGTTTGGTA+TGG 0.494732 3_4:-39354151 Msa0499890:CDS
ATTGAAGATGGTGTTGATGC+TGG 0.494844 3_4:-39350980 Msa0499890:CDS
ATTCTTGAAACTATTGAAGA+TGG 0.495019 3_4:-39350992 Msa0499890:CDS
CAGACGGAGGCGGGTGAGGT+GGG 0.495572 3_4:+39354437 None:intergenic
AGTAGCTTGGGTGGTGCTTG+TGG 0.498072 3_4:+39354560 None:intergenic
TAAGCAGCTGAAGGAGCTGC+AGG 0.503173 3_4:+39349805 None:intergenic
GAATAGCTTCAAGGAGGCGC+TGG 0.504940 3_4:-39349851 Msa0499890:CDS
GGAGGTGGGGTTCGGTCAGA+CGG 0.506358 3_4:+39354421 None:intergenic
TCGGCCGCCGTTTGATGCGA+CGG 0.509581 3_4:-39354220 Msa0499890:CDS
TGGGTGGTGCTTGTGGATGA+TGG 0.510861 3_4:+39354567 None:intergenic
GGACCGACTGGCCTTCCTGT+TGG 0.511142 3_4:-39348733 Msa0499890:CDS
CCTAGCTGGACTACCTGCCT+TGG 0.511239 3_4:-39348782 Msa0499890:CDS
TAGTGCGAAGGGAGTGGCGA+AGG 0.513009 3_4:+39354490 None:intergenic
CAACCCGTGGGATGTTTCTA+GGG 0.513746 3_4:-39351599 Msa0499890:CDS
GGTGGGGTTCGGTCAGACGG+AGG 0.514187 3_4:+39354424 None:intergenic
CATTATAAGGAATAGCTTCA+AGG 0.516894 3_4:-39349860 Msa0499890:CDS
GAAGGGTGAGGATTTGAGAG+GGG 0.518189 3_4:+39354508 None:intergenic
ATCATAGTAACCAGCTGAAA+GGG 0.518202 3_4:+39350277 None:intergenic
GCGAGGAGGGATTGGTCGGA+AGG 0.518314 3_4:+39354381 None:intergenic
CCTCGCCCGCAGCGATTCTA+CGG 0.518433 3_4:+39354340 None:intergenic
TTGGAAAGTAAGCCCTTGAA+AGG 0.521290 3_4:-39351031 Msa0499890:CDS
AGGGTGCCAGGAGGATCATC+CGG 0.523170 3_4:-39351580 Msa0499890:CDS
TGTTAAGGATAATATTTGTA+CGG 0.523699 3_4:-39354286 Msa0499890:CDS
ACGCTATCAGCTACGATTGG+TGG 0.525626 3_4:+39347153 None:intergenic
TGGAGGAAGGAACGGAGGTG+GGG 0.527467 3_4:+39354408 None:intergenic
CCAATTCTCAGTCCTTTCAA+GGG 0.528903 3_4:+39351019 None:intergenic
AGGAGGATCATCCGGAGGAT+CGG 0.529125 3_4:-39351572 Msa0499890:CDS
CAGGCAGTGTGTTGTATCGT+TGG 0.530074 3_4:-39351533 Msa0499890:CDS
TTACACTTGATCAATCTAGC+TGG 0.530696 3_4:+39346790 None:intergenic
CCGTAGAATCGCTGCGGGCG+AGG 0.530764 3_4:-39354340 Msa0499890:CDS
ATATTACAAACGAGCGCAGC+AGG 0.530821 3_4:-39350252 Msa0499890:intron
GCTGACATGCCGTCGACTGG+TGG 0.531775 3_4:-39354264 Msa0499890:CDS
CTTGAGACGCGCCCATATGT+TGG 0.532165 3_4:+39351448 None:intergenic
CGTCTCAAGATTTGGACTCA+TGG 0.533310 3_4:-39351434 Msa0499890:CDS
GGGAAATCAAGATATCATAT+TGG 0.533729 3_4:+39349827 None:intergenic
GGATTGAATGAGGTCGGTTG+CGG 0.533911 3_4:+39354458 None:intergenic
ACGGCTGACATGCCGTCGAC+TGG 0.535541 3_4:-39354267 Msa0499890:CDS
GTCATGTGCCTGAGCGAGGA+GGG 0.535764 3_4:+39354368 None:intergenic
GAAGTGGAGGACCTCGTTCA+CGG 0.536674 3_4:+39350904 None:intergenic
AAGGGAGAAGCGTGAGAGAG+TGG 0.537183 3_4:+39354590 None:intergenic
TGCCGTCGACTGGTGGGTCG+AGG 0.539238 3_4:-39354257 Msa0499890:CDS
CATCATAGTAACCAGCTGAA+AGG 0.540452 3_4:+39350276 None:intergenic
GGGTGTTAGTGCGAAGGGAG+TGG 0.541681 3_4:+39354484 None:intergenic
TATCATGACCAGCAATTGCA+TGG 0.543365 3_4:+39351344 None:intergenic
GTGTGTGAGAGTAGCTTGGG+TGG 0.544155 3_4:+39354551 None:intergenic
TAGGTTTGAAGCCAACATAT+GGG 0.545372 3_4:-39351459 Msa0499890:CDS
TGGTGGAAGTGTGAGGCAGC+CGG 0.546383 3_4:-39351500 Msa0499890:CDS
CGAGGAGGGATTGGTCGGAA+GGG 0.546960 3_4:+39354382 None:intergenic
GATCCTTTGGCTATGTATGC+TGG 0.549623 3_4:-39349673 Msa0499890:CDS
AATATGGATGAGTTTGGTAT+GGG 0.549939 3_4:-39354150 Msa0499890:CDS
AAGGGAGGTGGAGGAAGGAA+CGG 0.550801 3_4:+39354400 None:intergenic
TCACACTCACTCTAGAGTCT+AGG 0.552794 3_4:-39354655 Msa0499890:five_prime_UTR
GATTGGTGCAGCGTTTAATG+AGG 0.553855 3_4:-39348701 Msa0499890:intron
GAAGGGAGTGGCGAAGGGTG+AGG 0.555290 3_4:+39354496 None:intergenic
CCACATGGTAAAACCAAGGC+AGG 0.555507 3_4:+39348769 None:intergenic
GTCGGAAGGGAGGTGGAGGA+AGG 0.557260 3_4:+39354395 None:intergenic
GCGTCATCGCTTGATGCCAT+TGG 0.558040 3_4:-39351406 Msa0499890:CDS
TGATGCCACATCAAGTAAGC+AGG 0.559736 3_4:-39351317 Msa0499890:intron
CGGAGAGGGTGTTAGTGCGA+AGG 0.560428 3_4:+39354478 None:intergenic
TCATTCTCAATTTCAAAGAG+TGG 0.561387 3_4:+39346932 None:intergenic
GCGAAGGGTGAGGATTTGAG+AGG 0.562088 3_4:+39354506 None:intergenic
CCAAGGCAGGTAGTCCAGCT+AGG 0.568026 3_4:+39348782 None:intergenic
AGGCAGTGTGTTGTATCGTT+GGG 0.568441 3_4:-39351532 Msa0499890:CDS
GAGGTGGGATTGAATGAGGT+CGG 0.569920 3_4:+39354452 None:intergenic
TGCCTTGTAATTTACTGTTG+AGG 0.570208 3_4:-39346732 Msa0499890:intron
GCTAGATTGATCAAGTGTAA+AGG 0.571333 3_4:-39346787 Msa0499890:three_prime_UTR
CAAGGTCATGTGCCTGAGCG+AGG 0.574595 3_4:+39354364 None:intergenic
TGGTGGGTCGAGGATACTTG+AGG 0.574780 3_4:-39354247 Msa0499890:CDS
AGAGAGTTAAGGAATTGGGT+GGG 0.575125 3_4:-39354191 Msa0499890:CDS
CCGCAGCGATTCTACGGTCA+AGG 0.578115 3_4:+39354346 None:intergenic
GGTGCTTGTGGATGATGGAA+GGG 0.578689 3_4:+39354572 None:intergenic
TCGTACCTGCTTACTTGATG+TGG 0.579354 3_4:+39351312 None:intergenic
GACGGCGGTGAAGAGAGTTA+AGG 0.579689 3_4:-39354202 Msa0499890:CDS
TCAACGCTATCAGCTACGAT+TGG 0.582722 3_4:+39347150 None:intergenic
AGCAGCTGAAGGAGCTGCAG+GGG 0.585773 3_4:+39349807 None:intergenic
GCAGGGAGAGCTACTGAGAG+TGG 0.586007 3_4:-39347217 Msa0499890:intron
ACAACACCGCAAAATGATGC+CGG 0.586556 3_4:+39351481 None:intergenic
ACAAATGATAAAGCAATGGC+TGG 0.586617 3_4:+39346848 None:intergenic
CGAAGGGTGAGGATTTGAGA+GGG 0.587213 3_4:+39354507 None:intergenic
AGCGTGAGAGAGTGGAACGT+GGG 0.590701 3_4:+39354598 None:intergenic
GGGTGAGGTGGGATTGAATG+AGG 0.593659 3_4:+39354448 None:intergenic
CTTGACCGTAGAATCGCTGC+GGG 0.595517 3_4:-39354345 Msa0499890:CDS
GGTGGGTCGAGGATACTTGA+GGG 0.597676 3_4:-39354246 Msa0499890:CDS
AATAGGTGACTGCCAACCCG+TGG 0.597933 3_4:-39351612 Msa0499890:intron
CGATGAACCAAAGCAGCCAA+TGG 0.598497 3_4:+39351390 None:intergenic
AAGAGAGTTAAGGAATTGGG+TGG 0.601000 3_4:-39354192 Msa0499890:CDS
GGAGAGGGTGTTAGTGCGAA+GGG 0.602793 3_4:+39354479 None:intergenic
TTTATTGAGAATGGACCGAC+TGG 0.602965 3_4:-39348745 Msa0499890:CDS
TTATCAGTTTCATGAAAATG+CGG 0.606283 3_4:-39347079 Msa0499890:three_prime_UTR
ATCCTCGACCCACCAGTCGA+CGG 0.609093 3_4:+39354255 None:intergenic
GTGTACAAATGATAAAGCAA+TGG 0.609165 3_4:+39346844 None:intergenic
GCAACAAGAACACCAGCAAG+AGG 0.610406 3_4:+39354309 None:intergenic
CTGAGCGAGGAGGGATTGGT+CGG 0.613946 3_4:+39354377 None:intergenic
AAGCAGCTGAAGGAGCTGCA+GGG 0.619430 3_4:+39349806 None:intergenic
CCTAGAAACATCCCACGGGT+TGG 0.621583 3_4:+39351600 None:intergenic
AGTGCGAAGGGAGTGGCGAA+GGG 0.625108 3_4:+39354491 None:intergenic
CAGGGAGAGCTACTGAGAGT+GGG 0.626790 3_4:-39347216 Msa0499890:CDS
GGCACCCTAGAAACATCCCA+CGG 0.630241 3_4:+39351595 None:intergenic
ATTAGGATGCTCCGTGAACG+AGG 0.630524 3_4:-39350915 Msa0499890:intron
AAGCGTGAGAGAGTGGAACG+TGG 0.633684 3_4:+39354597 None:intergenic
CTGACATGCCGTCGACTGGT+GGG 0.633780 3_4:-39354263 Msa0499890:CDS
ATATGGATGAGTTTGGTATG+GGG 0.639425 3_4:-39354149 Msa0499890:CDS
TCAGTTTCATGAAAATGCGG+TGG 0.646417 3_4:-39347076 Msa0499890:three_prime_UTR
ACCGCCGTCGCATCAAACGG+CGG 0.647453 3_4:+39354216 None:intergenic
AAGCCAACAGGAAGGCCAGT+CGG 0.647905 3_4:+39348730 None:intergenic
CCATTCTCAATAAATCCACA+TGG 0.649598 3_4:+39348754 None:intergenic
TCACCAGCATACATAGCCAA+AGG 0.651194 3_4:+39349670 None:intergenic
TGTTAGAACCTGAAATGCAG+AGG 0.654321 3_4:+39354113 None:intergenic
GCCGCCGTTTGATGCGACGG+CGG 0.654353 3_4:-39354217 Msa0499890:CDS
GGTCATGTGCCTGAGCGAGG+AGG 0.655477 3_4:+39354367 None:intergenic
TCATTTGCAAGCCAACAGGA+AGG 0.659674 3_4:+39348722 None:intergenic
ATAGGTGACTGCCAACCCGT+GGG 0.663939 3_4:-39351611 Msa0499890:intron
GAATGAGGTCGGTTGCGGAG+AGG 0.665157 3_4:+39354463 None:intergenic
GCACCCTAGAAACATCCCAC+GGG 0.669473 3_4:+39351596 None:intergenic
AAATCCACATGGTAAAACCA+AGG 0.672604 3_4:+39348765 None:intergenic
GCGTGAGAGAGTGGAACGTG+GGG 0.681489 3_4:+39354599 None:intergenic
GTGATACTGGTGGAAGTGTG+AGG 0.689164 3_4:-39351507 Msa0499890:CDS
CCTTGACCGTAGAATCGCTG+CGG 0.690581 3_4:-39354346 Msa0499890:CDS
GATGTTTCTAGGGTGCCAGG+AGG 0.695678 3_4:-39351589 Msa0499890:CDS
AGGGTGAGGATTTGAGAGGG+GGG 0.698726 3_4:+39354510 None:intergenic
GTGCCAGGAGGATCATCCGG+AGG 0.699333 3_4:-39351577 Msa0499890:CDS
CATGACCAGCAATTGCATGG+AGG 0.725633 3_4:+39351347 None:intergenic
TATAAGGAATAGCTTCAAGG+AGG 0.745486 3_4:-39349857 Msa0499890:CDS
TCGTTGGGAAGTGATACTGG+TGG 0.795744 3_4:-39351517 Msa0499890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATCTATATAAGTATT+TGG + chr3_4:39348461-39348480 None:intergenic 10.0%
!! ATTGTTAAAAAGTAATTAAT+TGG + chr3_4:39350258-39350277 None:intergenic 10.0%
!! TAATTAATTAAGATATTTCT+TGG + chr3_4:39351994-39352013 None:intergenic 10.0%
!!! GTTTTTATTTTCTTTTTTTA+AGG + chr3_4:39354109-39354128 None:intergenic 10.0%
!!! TAGATTTTTTTGTTTTTGTT+TGG - chr3_4:39347413-39347432 Msa0499890:intron 15.0%
!!! CTAATTTGACAATAATTTTA+AGG + chr3_4:39347612-39347631 None:intergenic 15.0%
!! CTTAAAATTATTGTCAAATT+AGG - chr3_4:39347610-39347629 Msa0499890:intron 15.0%
!! GAATTGAAATAAAATTAACT+AGG + chr3_4:39347699-39347718 None:intergenic 15.0%
!! ATAACATATTGAATTCTTTA+GGG - chr3_4:39348030-39348049 Msa0499890:intron 15.0%
!! GAAATACATTATTTCAAAAT+TGG + chr3_4:39348486-39348505 None:intergenic 15.0%
!! AAATAATGTATTTCGAATAT+TGG - chr3_4:39348492-39348511 Msa0499890:intron 15.0%
!! TTTCAAATATTTATAATGTC+AGG - chr3_4:39348823-39348842 Msa0499890:intron 15.0%
!! TTCAAATATTTATAATGTCA+GGG - chr3_4:39348824-39348843 Msa0499890:intron 15.0%
!! AAAAAAAACAGAATATGAAA+TGG + chr3_4:39348904-39348923 None:intergenic 15.0%
!!! AATTTTTTCATTATTAGCAA+TGG - chr3_4:39350127-39350146 Msa0499890:intron 15.0%
!!! ATTGATAAATCATTTTGTTT+TGG - chr3_4:39350797-39350816 Msa0499890:intron 15.0%
!! AATAACAATGCATATAAAAT+TGG + chr3_4:39351016-39351035 None:intergenic 15.0%
!!! TTCTATTTTTAATACATTTC+AGG - chr3_4:39351047-39351066 Msa0499890:CDS 15.0%
!!! ACTTTAATTTATGTTTTTCT+CGG - chr3_4:39351156-39351175 Msa0499890:intron 15.0%
!!! TTTTGTTTATTTTAGAAGTT+TGG - chr3_4:39351425-39351444 Msa0499890:CDS 15.0%
!!! TTTGTTTATTTTAGAAGTTT+GGG - chr3_4:39351426-39351445 Msa0499890:CDS 15.0%
!! TTAATTAATTAATAACTGCA+GGG - chr3_4:39352003-39352022 Msa0499890:intron 15.0%
!!! TTATCTGTAATTTCATTTTT+AGG - chr3_4:39352494-39352513 Msa0499890:intron 15.0%
!!! TAATTTTTCTATAAACATGA+AGG + chr3_4:39353821-39353840 None:intergenic 15.0%
!!! TATTTTAACCTAAAATAATG+TGG - chr3_4:39354002-39354021 Msa0499890:intron 15.0%
!!! ATTTTAACCTAAAATAATGT+GGG - chr3_4:39354003-39354022 Msa0499890:intron 15.0%
!!! TTTCTTTTTTTAAGGAAAAA+AGG + chr3_4:39354101-39354120 None:intergenic 15.0%
!! TGAAACTGATAAATTATTTA+CGG + chr3_4:39354290-39354309 None:intergenic 15.0%
!!! TTTCATAAGTAAAAATCTTT+TGG - chr3_4:39354673-39354692 Msa0499890:five_prime_UTR 15.0%
!! AGTTGAAAGAAGATATATTA+GGG + chr3_4:39346693-39346712 None:intergenic 20.0%
!! TAGTTGAAAGAAGATATATT+AGG + chr3_4:39346694-39346713 None:intergenic 20.0%
!! TGTTAAGGATAATATTTGTA+CGG - chr3_4:39347091-39347110 Msa0499890:three_prime_UTR 20.0%
!! AAATTCAAAGTTTCAAACTA+AGG + chr3_4:39347337-39347356 None:intergenic 20.0%
!! TTTGCAATTTCAATAACTTT+AGG - chr3_4:39347646-39347665 Msa0499890:intron 20.0%
!! TTGCAATTTCAATAACTTTA+GGG - chr3_4:39347647-39347666 Msa0499890:intron 20.0%
!! GATAACATATTGAATTCTTT+AGG - chr3_4:39348029-39348048 Msa0499890:intron 20.0%
!! CTGTAAGTTGTTAAAATATA+GGG - chr3_4:39348735-39348754 Msa0499890:CDS 20.0%
!!! GTGTTTGTTTTTTTTTTATC+CGG - chr3_4:39348953-39348972 Msa0499890:intron 20.0%
!! TCTAAAAGTTCAAAAAACAA+GGG + chr3_4:39349078-39349097 None:intergenic 20.0%
!! ATCTAAAAGTTCAAAAAACA+AGG + chr3_4:39349079-39349098 None:intergenic 20.0%
!! TACTTCTAATATTACAAACT+GGG + chr3_4:39349295-39349314 None:intergenic 20.0%
!! TTACTTCTAATATTACAAAC+TGG + chr3_4:39349296-39349315 None:intergenic 20.0%
!! TATTAGAAGTAAATTTGAGA+AGG - chr3_4:39349304-39349323 Msa0499890:intron 20.0%
!! CTCTCTAAATCTAAATATAA+TGG + chr3_4:39349497-39349516 None:intergenic 20.0%
!! ATTACAAAACATACAAAAAG+TGG - chr3_4:39349608-39349627 Msa0499890:intron 20.0%
!! TTACAAAACATACAAAAAGT+GGG - chr3_4:39349609-39349628 Msa0499890:intron 20.0%
!! AACATATCTCAGTTATAAAT+GGG + chr3_4:39349719-39349738 None:intergenic 20.0%
!! AAACATATCTCAGTTATAAA+TGG + chr3_4:39349720-39349739 None:intergenic 20.0%
!!! AATTAATTGGCTTAATAACA+AGG + chr3_4:39350245-39350264 None:intergenic 20.0%
!! AACTAACAATGTAATTTATC+AGG - chr3_4:39350282-39350301 Msa0499890:CDS 20.0%
!! ATCCTTCTTAATTTCAAATT+TGG - chr3_4:39350936-39350955 Msa0499890:CDS 20.0%
!! AAGTATTTCATTCTTCTTAT+TGG - chr3_4:39351742-39351761 Msa0499890:intron 20.0%
!!! TATAATCAAATCAGAAGTAT+GGG + chr3_4:39351780-39351799 None:intergenic 20.0%
!! ATATAATCAAATCAGAAGTA+TGG + chr3_4:39351781-39351800 None:intergenic 20.0%
!!! TGAATCAAGTTTAATTTCAA+TGG + chr3_4:39351868-39351887 None:intergenic 20.0%
!! CTTAATTAATTAATAACTGC+AGG - chr3_4:39352002-39352021 Msa0499890:intron 20.0%
!! ATGTGTCAAGTATATATTAT+TGG - chr3_4:39352052-39352071 Msa0499890:intron 20.0%
!! TGTGTCAAGTATATATTATT+GGG - chr3_4:39352053-39352072 Msa0499890:intron 20.0%
!! ATTGTATAGGATTATTGTTT+AGG + chr3_4:39352388-39352407 None:intergenic 20.0%
!! CATCTCTATATTTATTGTAT+AGG + chr3_4:39352401-39352420 None:intergenic 20.0%
!!! TTTTTAAAGAGCATTAAAGA+GGG - chr3_4:39352788-39352807 Msa0499890:intron 20.0%
!!! TTCTTTAAGAAAATATTCTC+AGG + chr3_4:39352948-39352967 None:intergenic 20.0%
! ACTAATAAAAAATGCACTTG+TGG + chr3_4:39347516-39347535 None:intergenic 25.0%
!!! TAGTCCTTAAATCTGTTTTT+AGG - chr3_4:39347541-39347560 Msa0499890:intron 25.0%
! ACAACCTAAAAACAGATTTA+AGG + chr3_4:39347548-39347567 None:intergenic 25.0%
! TTTAAGGACTAAATTAACCA+AGG + chr3_4:39347596-39347615 None:intergenic 25.0%
! GATTATGAGTGTTTGAAAAA+AGG - chr3_4:39347781-39347800 Msa0499890:intron 25.0%
! TTATATCTTCTGAGTATGTT+AGG - chr3_4:39347832-39347851 Msa0499890:intron 25.0%
! TATATCTTCTGAGTATGTTA+GGG - chr3_4:39347833-39347852 Msa0499890:intron 25.0%
! ATGGTAAGTTGTTAAATGTA+GGG - chr3_4:39347865-39347884 Msa0499890:intron 25.0%
!! AACTTTGAGAATTGAAGAAT+AGG - chr3_4:39348344-39348363 Msa0499890:intron 25.0%
!! ACTTTGAGAATTGAAGAATA+GGG - chr3_4:39348345-39348364 Msa0499890:intron 25.0%
!!! AATGTGAATTGTTTTATCCA+TGG - chr3_4:39348398-39348417 Msa0499890:intron 25.0%
!!! AAGTTTGGTTTAAGATTTTC+TGG - chr3_4:39348519-39348538 Msa0499890:intron 25.0%
!!! TATTGTTTTAGGTTAGTACA+TGG + chr3_4:39348587-39348606 None:intergenic 25.0%
!! TTCTCGATATGTATTGTTTT+AGG + chr3_4:39348598-39348617 None:intergenic 25.0%
! AAATGCATCTAACAATTGTT+AGG + chr3_4:39348643-39348662 None:intergenic 25.0%
! AACAATTGTTAGATGCATTT+AGG - chr3_4:39348643-39348662 Msa0499890:intron 25.0%
! ACAATTGTTAGATGCATTTA+GGG - chr3_4:39348644-39348663 Msa0499890:intron 25.0%
!!! CCTATATTTTAACAACTTAC+AGG + chr3_4:39348737-39348756 None:intergenic 25.0%
! CCTGTAAGTTGTTAAAATAT+AGG - chr3_4:39348734-39348753 Msa0499890:CDS 25.0%
! ATAGTAAGTGGTTAGATAAA+GGG - chr3_4:39348767-39348786 Msa0499890:CDS 25.0%
!!! ATGTTTTTGTTTTCCAGTTT+GGG - chr3_4:39349013-39349032 Msa0499890:intron 25.0%
! ATTCTTAGATACATTAGTGT+GGG - chr3_4:39349138-39349157 Msa0499890:intron 25.0%
! GAAGAATGAAAATTGCAAAT+CGG - chr3_4:39349432-39349451 Msa0499890:intron 25.0%
! TACAAAACATACAAAAAGTG+GGG - chr3_4:39349610-39349629 Msa0499890:intron 25.0%
!! AACAACATTTTTACCAAACA+TGG + chr3_4:39350099-39350118 None:intergenic 25.0%
! TAACAATGTAATTTATCAGG+AGG - chr3_4:39350285-39350304 Msa0499890:CDS 25.0%
! TCAAAATGAGATAGAAAGTT+GGG + chr3_4:39350313-39350332 None:intergenic 25.0%
! ATTCTTGAAACTATTGAAGA+TGG - chr3_4:39350385-39350404 Msa0499890:intron 25.0%
! AGATATAGAGAAAAATGAAG+TGG + chr3_4:39350492-39350511 None:intergenic 25.0%
!!! TAAATCATTTTGTTTTGGCT+TGG - chr3_4:39350802-39350821 Msa0499890:intron 25.0%
!!! AAATCATTTTGTTTTGGCTT+GGG - chr3_4:39350803-39350822 Msa0499890:intron 25.0%
! ATATCTAGATATATAGAAGG+TGG + chr3_4:39350830-39350849 None:intergenic 25.0%
! ACCTTCTATATATCTAGATA+TGG - chr3_4:39350829-39350848 Msa0499890:intron 25.0%
! TCCATATCTAGATATATAGA+AGG + chr3_4:39350833-39350852 None:intergenic 25.0%
! TGAAATTAAGAAGGATTGAA+AGG + chr3_4:39350932-39350951 None:intergenic 25.0%
!! AGCCAAATTTGAAATTAAGA+AGG + chr3_4:39350941-39350960 None:intergenic 25.0%
!! AAATTTGGCTGCAAAATTTT+TGG - chr3_4:39350951-39350970 Msa0499890:CDS 25.0%
!! TTGGATCAATTCTTTTATAC+AGG + chr3_4:39350997-39351016 None:intergenic 25.0%
!!! GTGAAAATGAGAATTTTGAT+GGG - chr3_4:39351069-39351088 Msa0499890:CDS 25.0%
!!! TGAAAATGAGAATTTTGATG+GGG - chr3_4:39351070-39351089 Msa0499890:CDS 25.0%
!! TTAATTTATGTTTTTCTCGG+TGG - chr3_4:39351159-39351178 Msa0499890:intron 25.0%
!! TAATTTATGTTTTTCTCGGT+GGG - chr3_4:39351160-39351179 Msa0499890:intron 25.0%
! CTAAAAGACAAATAAAGAAC+AGG + chr3_4:39351315-39351334 None:intergenic 25.0%
! TTACATAGAACACACATAAA+AGG + chr3_4:39351486-39351505 None:intergenic 25.0%
! TGAAAAGAAAAATGATCCTT+TGG - chr3_4:39351691-39351710 Msa0499890:intron 25.0%
! GATTGAAGATATATCATCTA+AGG + chr3_4:39351963-39351982 None:intergenic 25.0%
! TATATACTTGACACATGTTA+AGG + chr3_4:39352048-39352067 None:intergenic 25.0%
! TGTTGAATTAGAGAAAATAG+AGG - chr3_4:39352137-39352156 Msa0499890:intron 25.0%
!! CAACAGAGTCAATTTTATAT+AGG - chr3_4:39352189-39352208 Msa0499890:intron 25.0%
! TCATAGCACATAAAGTAAAT+AGG + chr3_4:39352356-39352375 None:intergenic 25.0%
!! CATAATGTTTTCTGCTTTAT+TGG - chr3_4:39352543-39352562 Msa0499890:intron 25.0%
!!! TTGGTGGTTTTTCTTTTTAT+AGG - chr3_4:39352562-39352581 Msa0499890:intron 25.0%
!! CTCTTTAATGCTCTTTAAAA+AGG + chr3_4:39352789-39352808 None:intergenic 25.0%
!!! CTTTTTAAAGAGCATTAAAG+AGG - chr3_4:39352787-39352806 Msa0499890:intron 25.0%
! AATTCATGTTTGATATTCCA+GGG + chr3_4:39352877-39352896 None:intergenic 25.0%
! AAATTCATGTTTGATATTCC+AGG + chr3_4:39352878-39352897 None:intergenic 25.0%
!! CACAATTTTTAAACTCTCTT+TGG + chr3_4:39352905-39352924 None:intergenic 25.0%
! GAGAGTTTAAAAATTGTGTT+TGG - chr3_4:39352907-39352926 Msa0499890:intron 25.0%
!! AACTTCCATTGTTTCTTAAA+AGG + chr3_4:39353073-39353092 None:intergenic 25.0%
! CTTTCTTATAATACGATATC+AGG + chr3_4:39353181-39353200 None:intergenic 25.0%
! ACATATAAGAGGAATTAAGA+GGG + chr3_4:39353286-39353305 None:intergenic 25.0%
! TACATATAAGAGGAATTAAG+AGG + chr3_4:39353287-39353306 None:intergenic 25.0%
! TCTTAATTCCTCTTATATGT+AGG - chr3_4:39353286-39353305 Msa0499890:intron 25.0%
! TGAGATAATTGGAAGAAATA+TGG + chr3_4:39353320-39353339 None:intergenic 25.0%
! GGAATTTCAATCAAAATGTT+AGG + chr3_4:39353391-39353410 None:intergenic 25.0%
! AAAGATTAGACACATTCAAA+AGG - chr3_4:39353472-39353491 Msa0499890:intron 25.0%
! AAAAGGAAAATAGTAAAGAG+AGG - chr3_4:39353489-39353508 Msa0499890:intron 25.0%
!!! CAGTTGATAACTTTTAATCT+TGG + chr3_4:39353899-39353918 None:intergenic 25.0%
! CAAGATTAAAAGTTATCAAC+TGG - chr3_4:39353897-39353916 Msa0499890:intron 25.0%
!! AAAAACAGAATCATCCTTTT+TGG - chr3_4:39354123-39354142 Msa0499890:CDS 25.0%
! AAATAAATTCCAAGCCAAAA+AGG + chr3_4:39354140-39354159 None:intergenic 25.0%
! TTATCAGTTTCATGAAAATG+CGG - chr3_4:39354298-39354317 Msa0499890:CDS 25.0%
! TACCAAATAGAAGGAAAATT+TGG - chr3_4:39354355-39354374 Msa0499890:CDS 25.0%
!! AACCAAATTTTCCTTCTATT+TGG + chr3_4:39354360-39354379 None:intergenic 25.0%
!!! AAATTTGGTTTTGACATTAC+AGG - chr3_4:39354370-39354389 Msa0499890:CDS 25.0%
!!! TTTGTTTTTGCCTTTTTTGA+AGG - chr3_4:39354501-39354520 Msa0499890:CDS 25.0%
!!! TTGTTTTTGCCTTTTTTGAA+GGG - chr3_4:39354502-39354521 Msa0499890:CDS 25.0%
AATATGGATGAGTTTGGTAT+GGG - chr3_4:39347227-39347246 Msa0499890:intron 30.0%
TTGAAGTGAATGTTAATCTC+AGG - chr3_4:39347367-39347386 Msa0499890:intron 30.0%
! TCTTTCAATGTGTTTTTCCT+TGG - chr3_4:39347576-39347595 Msa0499890:intron 30.0%
TATGTTAGGGACTAAATTGA+TGG - chr3_4:39347846-39347865 Msa0499890:intron 30.0%
GATGGTAAGTTGTTAAATGT+AGG - chr3_4:39347864-39347883 Msa0499890:intron 30.0%
TTCAATGCCTCATGTAAATA+TGG - chr3_4:39348122-39348141 Msa0499890:intron 30.0%
TCAATGCCTCATGTAAATAT+GGG - chr3_4:39348123-39348142 Msa0499890:intron 30.0%
! AACATGTAGTTGATATTCGA+TGG - chr3_4:39348227-39348246 Msa0499890:intron 30.0%
ATGAGTTTCATTCATGAACT+TGG + chr3_4:39348434-39348453 None:intergenic 30.0%
! TCGAATATTGGTTGAAAGTT+TGG - chr3_4:39348504-39348523 Msa0499890:intron 30.0%
GTTGTGAAATATAGAAACAC+TGG + chr3_4:39348551-39348570 None:intergenic 30.0%
CTAACCACTTACTATCAAAT+AGG + chr3_4:39348762-39348781 None:intergenic 30.0%
GATAGTAAGTGGTTAGATAA+AGG - chr3_4:39348766-39348785 Msa0499890:CDS 30.0%
CAAAACAAACAAACAACTAC+CGG + chr3_4:39348975-39348994 None:intergenic 30.0%
!!! CATGTTTTTGTTTTCCAGTT+TGG - chr3_4:39349012-39349031 Msa0499890:intron 30.0%
GATTCTTAGATACATTAGTG+TGG - chr3_4:39349137-39349156 Msa0499890:intron 30.0%
TTCTTAGATACATTAGTGTG+GGG - chr3_4:39349139-39349158 Msa0499890:intron 30.0%
TAAATTTGAGAAGGTTTGAG+TGG - chr3_4:39349313-39349332 Msa0499890:intron 30.0%
TTGAATTAAGTTTGTGAGCA+TGG - chr3_4:39349380-39349399 Msa0499890:intron 30.0%
TGAATTAAGTTTGTGAGCAT+GGG - chr3_4:39349381-39349400 Msa0499890:intron 30.0%
TAACTGAGATATGTTTACTC+AGG - chr3_4:39349724-39349743 Msa0499890:intron 30.0%
GATGCATATGTTCATTCAAT+AGG - chr3_4:39349748-39349767 Msa0499890:intron 30.0%
GGCTCTTTGTTAAATATGAA+GGG - chr3_4:39350180-39350199 Msa0499890:intron 30.0%
GTCAAAATGAGATAGAAAGT+TGG + chr3_4:39350314-39350333 None:intergenic 30.0%
!! TTTTGACTATGCAAGTTCTT+TGG - chr3_4:39350327-39350346 Msa0499890:intron 30.0%
TATAGAGAAAAATGAAGTGG+AGG + chr3_4:39350489-39350508 None:intergenic 30.0%
! AGTTAATGGACAGATGAAAT+GGG + chr3_4:39350583-39350602 None:intergenic 30.0%
! AAGTTAATGGACAGATGAAA+TGG + chr3_4:39350584-39350603 None:intergenic 30.0%
! GGTGAAAATGAGAATTTTGA+TGG - chr3_4:39351068-39351087 Msa0499890:CDS 30.0%
TGACTGAATTCATTATCACT+GGG + chr3_4:39351213-39351232 None:intergenic 30.0%
TTATGTGTGTTCTATGTAAC+AGG - chr3_4:39351487-39351506 Msa0499890:intron 30.0%
CTTGAAGCTATTCCTTATAA+TGG + chr3_4:39351519-39351538 None:intergenic 30.0%
CATTATAAGGAATAGCTTCA+AGG - chr3_4:39351517-39351536 Msa0499890:CDS 30.0%
GGGAAATCAAGATATCATAT+TGG + chr3_4:39351553-39351572 None:intergenic 30.0%
ACATGATGCAATAATGCAAA+AGG + chr3_4:39351626-39351645 None:intergenic 30.0%
! AGACAAATAGTGTTAGTTTG+AGG - chr3_4:39351814-39351833 Msa0499890:intron 30.0%
! AATAGTGTTAGTTTGAGGTT+TGG - chr3_4:39351819-39351838 Msa0499890:intron 30.0%
AAAGCAGAAAACATTATGCT+AGG + chr3_4:39352541-39352560 None:intergenic 30.0%
!! AATGTTTTCTGCTTTATTGG+TGG - chr3_4:39352546-39352565 Msa0499890:intron 30.0%
!! AATTGTGTTTGGTTGATGAT+TGG - chr3_4:39352918-39352937 Msa0499890:intron 30.0%
! TCGTCTAGTTTACATGATAA+GGG + chr3_4:39352991-39353010 None:intergenic 30.0%
!! CACATATTGGTTTATAAACG+TGG - chr3_4:39353015-39353034 Msa0499890:intron 30.0%
!! AATGGCCTTTTAAGAAACAA+TGG - chr3_4:39353065-39353084 Msa0499890:intron 30.0%
AAACAATGGAAGTTAACTAC+TGG - chr3_4:39353079-39353098 Msa0499890:intron 30.0%
AACAATGGAAGTTAACTACT+GGG - chr3_4:39353080-39353099 Msa0499890:intron 30.0%
! CATTTTTGCCTACATATAAG+AGG + chr3_4:39353297-39353316 None:intergenic 30.0%
GTTAGTTGGATTGAGATAAT+TGG + chr3_4:39353331-39353350 None:intergenic 30.0%
!!! AGCTCGGTTTATTTTTTTTC+TGG - chr3_4:39353583-39353602 Msa0499890:intron 30.0%
!!! GCTCGGTTTATTTTTTTTCT+GGG - chr3_4:39353584-39353603 Msa0499890:intron 30.0%
!!! CTCGGTTTATTTTTTTTCTG+GGG - chr3_4:39353585-39353604 Msa0499890:intron 30.0%
TTTCCTTCATGAACTTAAGA+GGG + chr3_4:39353654-39353673 None:intergenic 30.0%
! TTTTCCTTCATGAACTTAAG+AGG + chr3_4:39353655-39353674 None:intergenic 30.0%
AAAACATACTGAACTACATG+TGG - chr3_4:39353763-39353782 Msa0499890:intron 30.0%
! TCATATACTTGGTCTTTCTT+GGG - chr3_4:39353961-39353980 Msa0499890:intron 30.0%
! GTCTTTCTTGGGTAAAATTT+TGG - chr3_4:39353972-39353991 Msa0499890:intron 30.0%
TAAGCAATCATTCTACATCT+TGG - chr3_4:39354260-39354279 Msa0499890:CDS 30.0%
! GACATTACAGGCAAATATTT+TGG - chr3_4:39354382-39354401 Msa0499890:CDS 30.0%
TCATTCTCAATTTCAAAGAG+TGG + chr3_4:39354448-39354467 None:intergenic 30.0%
GTGTACAAATGATAAAGCAA+TGG + chr3_4:39354536-39354555 None:intergenic 30.0%
ATCCTCAACAGTAAATTACA+AGG + chr3_4:39354650-39354669 None:intergenic 30.0%
GTGAAGAGAGTTAAGGAATT+GGG - chr3_4:39347182-39347201 Msa0499890:CDS 35.0%
AAGACGAATATGGATGAGTT+TGG - chr3_4:39347221-39347240 Msa0499890:intron 35.0%
GAATATGGATGAGTTTGGTA+TGG - chr3_4:39347226-39347245 Msa0499890:intron 35.0%
ATATGGATGAGTTTGGTATG+GGG - chr3_4:39347228-39347247 Msa0499890:intron 35.0%
ACTTTCAAGGACCTAAATTG+TGG + chr3_4:39347443-39347462 None:intergenic 35.0%
GAGAGCAAGTTATACTTTCA+AGG + chr3_4:39347456-39347475 None:intergenic 35.0%
!! AGTATAACTTGCTCTCACAT+TGG - chr3_4:39347460-39347479 Msa0499890:intron 35.0%
TTATTGTCAAATTAGGTGCC+AGG - chr3_4:39347617-39347636 Msa0499890:intron 35.0%
TATTGTCAAATTAGGTGCCA+GGG - chr3_4:39347618-39347637 Msa0499890:intron 35.0%
! GGGAACAAATTGATAGTAAG+TGG - chr3_4:39347885-39347904 Msa0499890:intron 35.0%
GAACTTCTATTTGCCTAAGT+TGG + chr3_4:39347970-39347989 None:intergenic 35.0%
! TGCTGCACAGAAGTATATAT+AGG - chr3_4:39348007-39348026 Msa0499890:intron 35.0%
CATTGAAGACTCTTGCTTTA+AGG + chr3_4:39348109-39348128 None:intergenic 35.0%
TTCTCTCCCATATTTACATG+AGG + chr3_4:39348132-39348151 None:intergenic 35.0%
TAGTAACTGTGAGCTGAATT+TGG - chr3_4:39348153-39348172 Msa0499890:intron 35.0%
AGCTGAATTTGGATTTCCAA+GGG - chr3_4:39348164-39348183 Msa0499890:intron 35.0%
TATTCGATGGAAGAGTTTGA+AGG - chr3_4:39348240-39348259 Msa0499890:intron 35.0%
ATACATGTGACATGAATGTC+TGG - chr3_4:39348305-39348324 Msa0499890:intron 35.0%
AACTTGGCATCAAATTTCCA+TGG + chr3_4:39348418-39348437 None:intergenic 35.0%
! TGCATTTAGGGCAATAACTA+AGG - chr3_4:39348656-39348675 Msa0499890:intron 35.0%
ACAACTTACAGGAGTAAGTA+CGG + chr3_4:39348726-39348745 None:intergenic 35.0%
!!! TTTTTGTTTTCCAGTTTGGG+TGG - chr3_4:39349016-39349035 Msa0499890:intron 35.0%
!!! TTTTGTTTTCCAGTTTGGGT+GGG - chr3_4:39349017-39349036 Msa0499890:intron 35.0%
! ATGATGTTTGATGATCCACT+TGG - chr3_4:39349181-39349200 Msa0499890:intron 35.0%
AAAGAATAGTGTCGTATGCT+AGG - chr3_4:39349234-39349253 Msa0499890:intron 35.0%
! TTTTCTCTCCAAACAAATGC+TGG + chr3_4:39349409-39349428 None:intergenic 35.0%
! ATCTCCTACAGTTGGTTTAT+GGG - chr3_4:39349455-39349474 Msa0499890:intron 35.0%
GATTTAGAGAGAGATTGTAG+AGG - chr3_4:39349506-39349525 Msa0499890:intron 35.0%
! ATTGTTGATGAATGACCTGA+TGG - chr3_4:39349546-39349565 Msa0499890:intron 35.0%
!!! TGTTGTTTTTTCTTCGTCTG+TGG - chr3_4:39349636-39349655 Msa0499890:intron 35.0%
!!! GTTGTTTTTTCTTCGTCTGT+GGG - chr3_4:39349637-39349656 Msa0499890:intron 35.0%
! TAGGTTTGAAGCCAACATAT+GGG - chr3_4:39349918-39349937 Msa0499890:intron 35.0%
! TACGAGTTTTTCACCATGTT+TGG - chr3_4:39350083-39350102 Msa0499890:intron 35.0%
GACAATGTTTGGTATAGTCT+CGG - chr3_4:39350158-39350177 Msa0499890:intron 35.0%
ACAATGTTTGGTATAGTCTC+GGG - chr3_4:39350159-39350178 Msa0499890:intron 35.0%
GGGCTCTTTGTTAAATATGA+AGG - chr3_4:39350179-39350198 Msa0499890:intron 35.0%
TCATCTGTCCATTAACTTAC+AGG - chr3_4:39350586-39350605 Msa0499890:intron 35.0%
AAGATGATTCAGACAAAGCA+AGG + chr3_4:39350655-39350674 None:intergenic 35.0%
TGTTCAGTTGTGTGTGTATT+TGG + chr3_4:39350748-39350767 None:intergenic 35.0%
ATCATAGTAACCAGCTGAAA+GGG + chr3_4:39351103-39351122 None:intergenic 35.0%
GTGACTGAATTCATTATCAC+TGG + chr3_4:39351214-39351233 None:intergenic 35.0%
! GTGATAATGAATTCAGTCAC+AGG - chr3_4:39351214-39351233 Msa0499890:intron 35.0%
AGACAAATAAAGAACAGGAG+TGG + chr3_4:39351310-39351329 None:intergenic 35.0%
AGTCAACATAGATATTGCTC+TGG - chr3_4:39351346-39351365 Msa0499890:CDS 35.0%
ATACTCTTGCTTCATTTCCT+AGG - chr3_4:39351379-39351398 Msa0499890:CDS 35.0%
AACAGGTGAGAACCATTATA+AGG - chr3_4:39351504-39351523 Msa0499890:CDS 35.0%
TATAAGGAATAGCTTCAAGG+AGG - chr3_4:39351520-39351539 Msa0499890:CDS 35.0%
! CCAATTTTATAAGCAGCTGA+AGG + chr3_4:39351584-39351603 None:intergenic 35.0%
CCTTCAGCTGCTTATAAAAT+TGG - chr3_4:39351581-39351600 Msa0499890:CDS 35.0%
CAGAGAAAGATTACTATTGC+AGG + chr3_4:39351654-39351673 None:intergenic 35.0%
AAATCCACATGGTAAAACCA+AGG + chr3_4:39352615-39352634 None:intergenic 35.0%
CCATTCTCAATAAATCCACA+TGG + chr3_4:39352626-39352645 None:intergenic 35.0%
CCATGTGGATTTATTGAGAA+TGG - chr3_4:39352623-39352642 Msa0499890:intron 35.0%
TATTCCAGGGAATCAATTCT+GGG + chr3_4:39352864-39352883 None:intergenic 35.0%
ATATTCCAGGGAATCAATTC+TGG + chr3_4:39352865-39352884 None:intergenic 35.0%
! CTCGTCTAGTTTACATGATA+AGG + chr3_4:39352992-39353011 None:intergenic 35.0%
CTTATCATGTAAACTAGACG+AGG - chr3_4:39352990-39353009 Msa0499890:intron 35.0%
! GTTACTTAGGAGGGTATAAA+TGG - chr3_4:39353047-39353066 Msa0499890:intron 35.0%
CAACATCTTTCTGTAACTGA+GGG + chr3_4:39353215-39353234 None:intergenic 35.0%
AAGTATCTAGTCCTTTGGTT+AGG + chr3_4:39353261-39353280 None:intergenic 35.0%
GAGTAAGAGTAAGAGTTAGT+TGG + chr3_4:39353345-39353364 None:intergenic 35.0%
ACTCTTACTCTTACTCTTAC+TGG - chr3_4:39353349-39353368 Msa0499890:intron 35.0%
TGAGTTGTATCACAAAGATG+AGG + chr3_4:39353412-39353431 None:intergenic 35.0%
TTTGCTTACAAACTGTAGCT+CGG - chr3_4:39353567-39353586 Msa0499890:intron 35.0%
!!! ATTTTTTATTGTTGTCCCCC+TGG - chr3_4:39353626-39353645 Msa0499890:intron 35.0%
AACATGAAGGTTTAGCAACT+CGG + chr3_4:39353808-39353827 None:intergenic 35.0%
!!! TTTTCGGTGTCTCATATACT+TGG - chr3_4:39353950-39353969 Msa0499890:intron 35.0%
! CTCATATACTTGGTCTTTCT+TGG - chr3_4:39353960-39353979 Msa0499890:intron 35.0%
! ATGCATGCCCACATTATTTT+AGG + chr3_4:39354013-39354032 None:intergenic 35.0%
!! TTGGCTTGGAATTTATTTGC+AGG - chr3_4:39354142-39354161 Msa0499890:CDS 35.0%
! TGGCTTGGAATTTATTTGCA+GGG - chr3_4:39354143-39354162 Msa0499890:CDS 35.0%
GTTCAGTGTTACCAAATAGA+AGG - chr3_4:39354346-39354365 Msa0499890:CDS 35.0%
ACAAATGATAAAGCAATGGC+TGG + chr3_4:39354532-39354551 None:intergenic 35.0%
TTACACTTGATCAATCTAGC+TGG + chr3_4:39354590-39354609 None:intergenic 35.0%
GCTAGATTGATCAAGTGTAA+AGG - chr3_4:39354590-39354609 Msa0499890:CDS 35.0%
TGCCTTGTAATTTACTGTTG+AGG - chr3_4:39354645-39354664 Msa0499890:exon 35.0%
! TGGTGTTCTTGTTGCTGTTA+AGG - chr3_4:39347076-39347095 Msa0499890:three_prime_UTR 40.0%
GGTGAAGAGAGTTAAGGAAT+TGG - chr3_4:39347181-39347200 Msa0499890:CDS 40.0%
AAGAGAGTTAAGGAATTGGG+TGG - chr3_4:39347185-39347204 Msa0499890:CDS 40.0%
AGAGAGTTAAGGAATTGGGT+GGG - chr3_4:39347186-39347205 Msa0499890:CDS 40.0%
! AATTGGGTGGGATTGTTGTT+GGG - chr3_4:39347198-39347217 Msa0499890:CDS 40.0%
TGTTGTTGGGAAGACGAATA+TGG - chr3_4:39347211-39347230 Msa0499890:CDS 40.0%
TGTTAGAACCTGAAATGCAG+AGG + chr3_4:39347267-39347286 None:intergenic 40.0%
TGTTTGGCACACCACAATTT+AGG - chr3_4:39347429-39347448 Msa0499890:intron 40.0%
TGAAATTGCAAACACATCCC+TGG + chr3_4:39347638-39347657 None:intergenic 40.0%
! TACAAAGTCAGAGACTGGTT+TGG + chr3_4:39347737-39347756 None:intergenic 40.0%
AAACCAGTCTCTGACTTTGT+AGG - chr3_4:39347736-39347755 Msa0499890:intron 40.0%
AACCAGTCTCTGACTTTGTA+GGG - chr3_4:39347737-39347756 Msa0499890:intron 40.0%
! GTTGTTTCCTCATCCAACTT+AGG - chr3_4:39347954-39347973 Msa0499890:intron 40.0%
! CTATTTGCCTAAGTTGGATG+AGG + chr3_4:39347964-39347983 None:intergenic 40.0%
GAGCTGAATTTGGATTTCCA+AGG - chr3_4:39348163-39348182 Msa0499890:intron 40.0%
CAACTACATGTTTCTTCCAC+CGG + chr3_4:39348219-39348238 None:intergenic 40.0%
AGTTTGAAGGATGGTTTCTG+AGG - chr3_4:39348253-39348272 Msa0499890:intron 40.0%
ACATGTATCATTCCCACACT+TGG + chr3_4:39348293-39348312 None:intergenic 40.0%
CATGAATGTCTGGATGAAGA+TGG - chr3_4:39348315-39348334 Msa0499890:intron 40.0%
ATTCACATTGCAGTTGTTCC+AGG + chr3_4:39348387-39348406 None:intergenic 40.0%
GTTAGTACATGGCACATGAA+TGG + chr3_4:39348576-39348595 None:intergenic 40.0%
!! GTTAGGTAGTGTTGACTGTA+GGG + chr3_4:39348626-39348645 None:intergenic 40.0%
!! TGTTAGGTAGTGTTGACTGT+AGG + chr3_4:39348627-39348646 None:intergenic 40.0%
! GGGACCTATTTGATAGTAAG+TGG - chr3_4:39348755-39348774 Msa0499890:CDS 40.0%
TTTGTATGGCGCTCTCAAAT+AGG + chr3_4:39348851-39348870 None:intergenic 40.0%
AACTAGTCCCAGACTTTGTA+TGG + chr3_4:39348865-39348884 None:intergenic 40.0%
!! TACAAAGTCTGGGACTAGTT+TGG - chr3_4:39348865-39348884 Msa0499890:intron 40.0%
! CTGGGCATTTGAAATTTGAG+AGG + chr3_4:39349277-39349296 None:intergenic 40.0%
GTTTGAGTGGTGACATTATG+TGG - chr3_4:39349326-39349345 Msa0499890:intron 40.0%
! GATCTCCTACAGTTGGTTTA+TGG - chr3_4:39349454-39349473 Msa0499890:intron 40.0%
! TCTCCTACAGTTGGTTTATG+GGG - chr3_4:39349456-39349475 Msa0499890:intron 40.0%
!!! TTTTTTCTTCGTCTGTGGGT+GGG - chr3_4:39349641-39349660 Msa0499890:intron 40.0%
! GTAGGTTTGAAGCCAACATA+TGG - chr3_4:39349917-39349936 Msa0499890:intron 40.0%
TATCATGACCAGCAATTGCA+TGG + chr3_4:39350036-39350055 None:intergenic 40.0%
TGGTCATTGACGACAATGTT+TGG - chr3_4:39350147-39350166 Msa0499890:intron 40.0%
TTGGAAAGTAAGCCCTTGAA+AGG - chr3_4:39350346-39350365 Msa0499890:intron 40.0%
CCAATTCTCAGTCCTTTCAA+GGG + chr3_4:39350361-39350380 None:intergenic 40.0%
ACCAATTCTCAGTCCTTTCA+AGG + chr3_4:39350362-39350381 None:intergenic 40.0%
!! ATTGAAGATGGTGTTGATGC+TGG - chr3_4:39350397-39350416 Msa0499890:intron 40.0%
CAGTGACACCTGTAAGTTAA+TGG + chr3_4:39350597-39350616 None:intergenic 40.0%
AAAGCAAGGACATAGTATGC+TGG + chr3_4:39350641-39350660 None:intergenic 40.0%
TGTCTCGCTATGATGGTATT+AGG - chr3_4:39350681-39350700 Msa0499890:intron 40.0%
CTATGATGGTATTAGGTCAG+TGG - chr3_4:39350688-39350707 Msa0499890:intron 40.0%
CTAGCTCATCAGCATAAACT+TGG + chr3_4:39350858-39350877 None:intergenic 40.0%
CATCATAGTAACCAGCTGAA+AGG + chr3_4:39351104-39351123 None:intergenic 40.0%
ACGTCGATATAAGACAACCT+AGG + chr3_4:39351399-39351418 None:intergenic 40.0%
TTCGCTGGGATATTGCTTTA+TGG + chr3_4:39352092-39352111 None:intergenic 40.0%
AACTGATGACTTCATTCGCT+GGG + chr3_4:39352106-39352125 None:intergenic 40.0%
TAACTGATGACTTCATTCGC+TGG + chr3_4:39352107-39352126 None:intergenic 40.0%
TCTGTTGTGTAGTTGAGACA+CGG + chr3_4:39352176-39352195 None:intergenic 40.0%
ATAACTAATTATGCGCCCAG+TGG - chr3_4:39352444-39352463 Msa0499890:intron 40.0%
ATCAAACTCTCTAAGCCACT+GGG + chr3_4:39352462-39352481 None:intergenic 40.0%
TAGGTAAATGTCAACCTAGC+TGG - chr3_4:39352581-39352600 Msa0499890:intron 40.0%
TTTATTGAGAATGGACCGAC+TGG - chr3_4:39352632-39352651 Msa0499890:intron 40.0%
!! AAGAGCATTAAAGAGGGAGA+TGG - chr3_4:39352794-39352813 Msa0499890:intron 40.0%
AGGGAGATGGTTAAAACCTA+AGG - chr3_4:39352807-39352826 Msa0499890:intron 40.0%
GGGAGATGGTTAAAACCTAA+GGG - chr3_4:39352808-39352827 Msa0499890:intron 40.0%
! TATTCCCAGAATTGATTCCC+TGG - chr3_4:39352857-39352876 Msa0499890:intron 40.0%
ACTAGACGAGGTACACATAT+TGG - chr3_4:39353002-39353021 Msa0499890:intron 40.0%
GCAACATCTTTCTGTAACTG+AGG + chr3_4:39353216-39353235 None:intergenic 40.0%
AAGATGTTGCAGAACTTCGA+TGG - chr3_4:39353226-39353245 Msa0499890:intron 40.0%
TATCTAGTCCTTTGGTTAGG+AGG + chr3_4:39353258-39353277 None:intergenic 40.0%
!!! TTTTTCTGGGGCTAAAAGAG+AGG - chr3_4:39353597-39353616 Msa0499890:intron 40.0%
!! ATGAACTTAAGAGGGTACCA+GGG + chr3_4:39353646-39353665 None:intergenic 40.0%
GTACCCTCTTAAGTTCATGA+AGG - chr3_4:39353648-39353667 Msa0499890:intron 40.0%
! GCTACATTTTGCCCTAGATT+GGG - chr3_4:39353719-39353738 Msa0499890:intron 40.0%
CTCACGTACTATTACACTGT+TGG - chr3_4:39353856-39353875 Msa0499890:intron 40.0%
CGTACTATTACACTGTTGGT+AGG - chr3_4:39353860-39353879 Msa0499890:intron 40.0%
! CGTGCTCTTACTACTCTTTT+CGG - chr3_4:39353934-39353953 Msa0499890:intron 40.0%
CGTTATCTCTTGTAGAACTC+AGG + chr3_4:39354041-39354060 None:intergenic 40.0%
!!! CAGAATCATCCTTTTTGGCT+TGG - chr3_4:39354128-39354147 Msa0499890:CDS 40.0%
! AGCTGATAGCGTTGAATAAC+AGG - chr3_4:39354235-39354254 Msa0499890:CDS 40.0%
TCAGTTTCATGAAAATGCGG+TGG - chr3_4:39354301-39354320 Msa0499890:CDS 40.0%
TGGTCACACATGATTGAATC+TGG - chr3_4:39354402-39354421 Msa0499890:CDS 40.0%
!! TCACACTCACTCTAGAGTCT+AGG - chr3_4:39346722-39346741 Msa0499890:three_prime_UTR 45.0%
CGAGGATACTTGAGGGTTAT+CGG - chr3_4:39347138-39347157 Msa0499890:exon 45.0%
GAATTGGGTGGGATTGTTGT+TGG - chr3_4:39347197-39347216 Msa0499890:CDS 45.0%
TACTGAAGCCTCTGCATTTC+AGG - chr3_4:39347256-39347275 Msa0499890:intron 45.0%
!! AAAGTCAGAGACTGGTTTGG+TGG + chr3_4:39347734-39347753 None:intergenic 45.0%
! TTTGTAGGGCGTTCTCAGAT+AGG - chr3_4:39347751-39347770 Msa0499890:intron 45.0%
GGTGTTTCCTCATCCAACTT+AGG - chr3_4:39347906-39347925 Msa0499890:intron 45.0%
AAACCTACCAGAGCCTAAGT+TGG + chr3_4:39347922-39347941 None:intergenic 45.0%
!! AGCAAAAGCATCAACCACCA+AGG - chr3_4:39348070-39348089 Msa0499890:intron 45.0%
CAGTCCTTGAGATAGGTTGT+CGG - chr3_4:39348187-39348206 Msa0499890:intron 45.0%
AGTCCTTGAGATAGGTTGTC+GGG - chr3_4:39348188-39348207 Msa0499890:intron 45.0%
CGATGGAAGAGTTTGAAGGA+TGG - chr3_4:39348244-39348263 Msa0499890:intron 45.0%
ATTGCAGTTGTTCCAGGTGT+CGG + chr3_4:39348381-39348400 None:intergenic 45.0%
!! AAAGTCTGGGACTAGTTTGG+TGG - chr3_4:39348868-39348887 Msa0499890:intron 45.0%
! CATTAGTGTGGGGTTAGTGT+TGG - chr3_4:39349149-39349168 Msa0499890:intron 45.0%
CTGATGTCAGTCATGTTGAG+CGG - chr3_4:39349204-39349223 Msa0499890:intron 45.0%
CATGGGTTCCAGCATTTGTT+TGG - chr3_4:39349398-39349417 Msa0499890:intron 45.0%
CAAATCGGATCTCCTACAGT+TGG - chr3_4:39349447-39349466 Msa0499890:intron 45.0%
CATCACTTTATGCGTCCATC+AGG + chr3_4:39349564-39349583 None:intergenic 45.0%
!!! GTTTTTTCTTCGTCTGTGGG+TGG - chr3_4:39349640-39349659 Msa0499890:intron 45.0%
AGGCAGTGTGTTGTATCGTT+GGG - chr3_4:39349845-39349864 Msa0499890:CDS 45.0%
GTATCGTTGGGAAGTGATAC+TGG - chr3_4:39349857-39349876 Msa0499890:CDS 45.0%
ACAACACCGCAAAATGATGC+CGG + chr3_4:39349899-39349918 None:intergenic 45.0%
!!! GCATCATTTTGCGGTGTTGT+AGG - chr3_4:39349899-39349918 Msa0499890:intron 45.0%
CGTCTCAAGATTTGGACTCA+TGG - chr3_4:39349943-39349962 Msa0499890:intron 45.0%
! CATTGGCTGCTTTGGTTCAT+CGG - chr3_4:39349988-39350007 Msa0499890:intron 45.0%
ATTCTCCTCCATGCAATTGC+TGG - chr3_4:39350025-39350044 Msa0499890:intron 45.0%
TGATGCCACATCAAGTAAGC+AGG - chr3_4:39350060-39350079 Msa0499890:intron 45.0%
TCGTACCTGCTTACTTGATG+TGG + chr3_4:39350068-39350087 None:intergenic 45.0%
CCCTTGAAAGGACTGAGAAT+TGG - chr3_4:39350358-39350377 Msa0499890:intron 45.0%
! TGATGCTGCTTCACACTTTG+AGG - chr3_4:39350438-39350457 Msa0499890:intron 45.0%
!! GCTTCACACTTTGAGGCATT+AGG - chr3_4:39350445-39350464 Msa0499890:intron 45.0%
TCCAACTTGTCTCGCTATGA+TGG - chr3_4:39350674-39350693 Msa0499890:intron 45.0%
ACCATCATAGCGAGACAAGT+TGG + chr3_4:39350678-39350697 None:intergenic 45.0%
GATGAGCTAGACTCTCTCTA+TGG - chr3_4:39350868-39350887 Msa0499890:intron 45.0%
TACCTCAGAACCTAACCCTT+TGG + chr3_4:39350905-39350924 None:intergenic 45.0%
ATATTACAAACGAGCGCAGC+AGG - chr3_4:39351125-39351144 Msa0499890:intron 45.0%
CTGGGTTAAGAAGAATCGAG+AGG + chr3_4:39351195-39351214 None:intergenic 45.0%
TGAATTCAGTCACAGGACTC+AGG - chr3_4:39351221-39351240 Msa0499890:intron 45.0%
GATCCTTTGGCTATGTATGC+TGG - chr3_4:39351704-39351723 Msa0499890:intron 45.0%
TCACCAGCATACATAGCCAA+AGG + chr3_4:39351710-39351729 None:intergenic 45.0%
GATCAAACTCTCTAAGCCAC+TGG + chr3_4:39352463-39352482 None:intergenic 45.0%
TCATTTGCAAGCCAACAGGA+AGG + chr3_4:39352658-39352677 None:intergenic 45.0%
CCAATCATTTGCAAGCCAAC+AGG + chr3_4:39352662-39352681 None:intergenic 45.0%
!! CCTGTTGGCTTGCAAATGAT+TGG - chr3_4:39352659-39352678 Msa0499890:intron 45.0%
GATTGGTGCAGCGTTTAATG+AGG - chr3_4:39352676-39352695 Msa0499890:intron 45.0%
! ACACTGAACTTCGTGTTGAC+TGG - chr3_4:39352720-39352739 Msa0499890:intron 45.0%
!! CACTGAACTTCGTGTTGACT+GGG - chr3_4:39352721-39352740 Msa0499890:intron 45.0%
CATCAATCAAACGCTCCCTT+AGG + chr3_4:39352826-39352845 None:intergenic 45.0%
!! CTAAGGGAGCGTTTGATTGA+TGG - chr3_4:39352824-39352843 Msa0499890:intron 45.0%
TGCCTTGCAGTTACTTAGGA+GGG - chr3_4:39353038-39353057 Msa0499890:intron 45.0%
TACCCTCCTAAGTAACTGCA+AGG + chr3_4:39353043-39353062 None:intergenic 45.0%
TAGTATCAGAGCTCCGATCT+CGG + chr3_4:39353147-39353166 None:intergenic 45.0%
! GGTTTGTTCCTCCTAACCAA+AGG - chr3_4:39353247-39353266 Msa0499890:intron 45.0%
!! GGGAGAAGTATCTAGTCCTT+TGG + chr3_4:39353266-39353285 None:intergenic 45.0%
!! TGAACTTAAGAGGGTACCAG+GGG + chr3_4:39353645-39353664 None:intergenic 45.0%
!! CATGAACTTAAGAGGGTACC+AGG + chr3_4:39353647-39353666 None:intergenic 45.0%
! CGCTACATTTTGCCCTAGAT+TGG - chr3_4:39353718-39353737 Msa0499890:intron 45.0%
! CATTTTGCCCTAGATTGGGT+TGG - chr3_4:39353723-39353742 Msa0499890:intron 45.0%
AATGCAGCCAACCCAATCTA+GGG + chr3_4:39353733-39353752 None:intergenic 45.0%
AAATGCAGCCAACCCAATCT+AGG + chr3_4:39353734-39353753 None:intergenic 45.0%
! CTCGGACAGAAAAGTACACT+TGG + chr3_4:39353790-39353809 None:intergenic 45.0%
TCAACGCTATCAGCTACGAT+TGG + chr3_4:39354230-39354249 None:intergenic 45.0%
TGGCTGAAGCAGGTATGTTT+AGG - chr3_4:39354321-39354340 Msa0499890:CDS 45.0%
GGCTGAAGCAGGTATGTTTA+GGG - chr3_4:39354322-39354341 Msa0499890:CDS 45.0%
GCTGGTGATCCCTTCAAAAA+AGG + chr3_4:39354514-39354533 None:intergenic 45.0%
!! GGTGCTTGTGGATGATGGAA+GGG + chr3_4:39346808-39346827 None:intergenic 50.0%
!! TGGTGCTTGTGGATGATGGA+AGG + chr3_4:39346809-39346828 None:intergenic 50.0%
AAGGGTGAGGATTTGAGAGG+GGG + chr3_4:39346871-39346890 None:intergenic 50.0%
GAAGGGTGAGGATTTGAGAG+GGG + chr3_4:39346872-39346891 None:intergenic 50.0%
CGAAGGGTGAGGATTTGAGA+GGG + chr3_4:39346873-39346892 None:intergenic 50.0%
GGATTGAATGAGGTCGGTTG+CGG + chr3_4:39346922-39346941 None:intergenic 50.0%
GAGGTGGGATTGAATGAGGT+CGG + chr3_4:39346928-39346947 None:intergenic 50.0%
GAGGAAATTGGTCCTCTTGC+TGG - chr3_4:39347056-39347075 Msa0499890:three_prime_UTR 50.0%
GCAACAAGAACACCAGCAAG+AGG + chr3_4:39347071-39347090 None:intergenic 50.0%
TCCTCATCCAACTTAGGCTC+TGG - chr3_4:39347912-39347931 Msa0499890:intron 50.0%
! ACCAGAGCCTAAGTTGGATG+AGG + chr3_4:39347916-39347935 None:intergenic 50.0%
! CATCCAACTTAGGCTCTGGT+AGG - chr3_4:39347916-39347935 Msa0499890:intron 50.0%
ATCAACCACCAAGGCCACAA+GGG - chr3_4:39348079-39348098 Msa0499890:intron 50.0%
!! TGCTTTAAGGACTCCCCTTG+TGG + chr3_4:39348096-39348115 None:intergenic 50.0%
CAACCCGACAACCTATCTCA+AGG + chr3_4:39348194-39348213 None:intergenic 50.0%
!! GATAGGTTGTCGGGTTGAAC+CGG - chr3_4:39348197-39348216 Msa0499890:intron 50.0%
! AGGATGGTTTCTGAGGAGCT+TGG - chr3_4:39348260-39348279 Msa0499890:intron 50.0%
! GGATGGTTTCTGAGGAGCTT+GGG - chr3_4:39348261-39348280 Msa0499890:intron 50.0%
! GATGGTTTCTGAGGAGCTTG+GGG - chr3_4:39348262-39348281 Msa0499890:intron 50.0%
! ATGGTTTCTGAGGAGCTTGG+GGG - chr3_4:39348263-39348282 Msa0499890:intron 50.0%
TTGCAGTTGTTCCAGGTGTC+GGG + chr3_4:39348380-39348399 None:intergenic 50.0%
!! TGAGAGCGCCATACAAAGTC+TGG - chr3_4:39348854-39348873 Msa0499890:intron 50.0%
!! GAGAGCGCCATACAAAGTCT+GGG - chr3_4:39348855-39348874 Msa0499890:intron 50.0%
GCTTAAATGCCCACCCAAAC+TGG + chr3_4:39349029-39349048 None:intergenic 50.0%
CATGACTGACATCAGCCAAG+TGG + chr3_4:39349199-39349218 None:intergenic 50.0%
CTGCCCCATAAACCAACTGT+AGG + chr3_4:39349462-39349481 None:intergenic 50.0%
! CAACCCGTGGGATGTTTCTA+GGG - chr3_4:39349778-39349797 Msa0499890:intron 50.0%
CAACGATACAACACACTGCC+TGG + chr3_4:39349846-39349865 None:intergenic 50.0%
CAGGCAGTGTGTTGTATCGT+TGG - chr3_4:39349844-39349863 Msa0499890:CDS 50.0%
TCGTTGGGAAGTGATACTGG+TGG - chr3_4:39349860-39349879 Msa0499890:CDS 50.0%
! GTGATACTGGTGGAAGTGTG+AGG - chr3_4:39349870-39349889 Msa0499890:CDS 50.0%
TATGGGCGCGTCTCAAGATT+TGG - chr3_4:39349935-39349954 Msa0499890:intron 50.0%
! CTTGATGCCATTGGCTGCTT+TGG - chr3_4:39349980-39349999 Msa0499890:intron 50.0%
CGATGAACCAAAGCAGCCAA+TGG + chr3_4:39349990-39350009 None:intergenic 50.0%
CATGACCAGCAATTGCATGG+AGG + chr3_4:39350033-39350052 None:intergenic 50.0%
ATTAGGATGCTCCGTGAACG+AGG - chr3_4:39350462-39350481 Msa0499890:intron 50.0%
! TCACTGCCATCCTTTTCGCT+TGG - chr3_4:39350611-39350630 Msa0499890:intron 50.0%
! CACTGCCATCCTTTTCGCTT+GGG - chr3_4:39350612-39350631 Msa0499890:intron 50.0%
TTTGGACGAAGAGAGCGAGA+GGG + chr3_4:39350730-39350749 None:intergenic 50.0%
ATTTGGACGAAGAGAGCGAG+AGG + chr3_4:39350731-39350750 None:intergenic 50.0%
TATGGTGAATCCCGAGCCAA+AGG - chr3_4:39350886-39350905 Msa0499890:intron 50.0%
ATGGTGAATCCCGAGCCAAA+GGG - chr3_4:39350887-39350906 Msa0499890:intron 50.0%
! AGAACCTAACCCTTTGGCTC+GGG + chr3_4:39350899-39350918 None:intergenic 50.0%
CAGAACCTAACCCTTTGGCT+CGG + chr3_4:39350900-39350919 None:intergenic 50.0%
AGCCAAAGGGTTAGGTTCTG+AGG - chr3_4:39350900-39350919 Msa0499890:intron 50.0%
!! AGAGCTTTGAGCCATTGAGC+AGG - chr3_4:39351916-39351935 Msa0499890:intron 50.0%
GGCATAAACCAGCAGTTCTG+TGG + chr3_4:39351942-39351961 None:intergenic 50.0%
CCACATGGTAAAACCAAGGC+AGG + chr3_4:39352611-39352630 None:intergenic 50.0%
!!! CCTGCCTTGGTTTTACCATG+TGG - chr3_4:39352608-39352627 Msa0499890:intron 50.0%
GTGGTGCCTTGCAGTTACTT+AGG - chr3_4:39353034-39353053 Msa0499890:intron 50.0%
GTGCCTTGCAGTTACTTAGG+AGG - chr3_4:39353037-39353056 Msa0499890:intron 50.0%
ACTCGATCACACACAAGGGT+GGG + chr3_4:39353117-39353136 None:intergenic 50.0%
AGCGACTCGATCACACACAA+GGG + chr3_4:39353121-39353140 None:intergenic 50.0%
!! GAACTTAAGAGGGTACCAGG+GGG + chr3_4:39353644-39353663 None:intergenic 50.0%
ACGCTATCAGCTACGATTGG+TGG + chr3_4:39354227-39354246 None:intergenic 50.0%
GTAAAGGAGCAACTGCTCGT+TGG - chr3_4:39354606-39354625 Msa0499890:CDS 50.0%
AGAGAGTGGAACGTGGGGTT+TGG + chr3_4:39346776-39346795 None:intergenic 55.0%
AGCGTGAGAGAGTGGAACGT+GGG + chr3_4:39346782-39346801 None:intergenic 55.0%
AAGCGTGAGAGAGTGGAACG+TGG + chr3_4:39346783-39346802 None:intergenic 55.0%
! AAGGGAGAAGCGTGAGAGAG+TGG + chr3_4:39346790-39346809 None:intergenic 55.0%
TGGGTGGTGCTTGTGGATGA+TGG + chr3_4:39346813-39346832 None:intergenic 55.0%
AGTAGCTTGGGTGGTGCTTG+TGG + chr3_4:39346820-39346839 None:intergenic 55.0%
GTGTGTGAGAGTAGCTTGGG+TGG + chr3_4:39346829-39346848 None:intergenic 55.0%
GGGGTGTGTGAGAGTAGCTT+GGG + chr3_4:39346832-39346851 None:intergenic 55.0%
AGGGTGAGGATTTGAGAGGG+GGG + chr3_4:39346870-39346889 None:intergenic 55.0%
GCGAAGGGTGAGGATTTGAG+AGG + chr3_4:39346874-39346893 None:intergenic 55.0%
!! GGAGAGGGTGTTAGTGCGAA+GGG + chr3_4:39346901-39346920 None:intergenic 55.0%
AATGAGGTCGGTTGCGGAGA+GGG + chr3_4:39346916-39346935 None:intergenic 55.0%
GGGTGAGGTGGGATTGAATG+AGG + chr3_4:39346932-39346951 None:intergenic 55.0%
AAGGGAGGTGGAGGAAGGAA+CGG + chr3_4:39346980-39346999 None:intergenic 55.0%
CCTTGACCGTAGAATCGCTG+CGG - chr3_4:39347031-39347050 Msa0499890:three_prime_UTR 55.0%
CTTGACCGTAGAATCGCTGC+GGG - chr3_4:39347032-39347051 Msa0499890:three_prime_UTR 55.0%
! TGGTGGGTCGAGGATACTTG+AGG - chr3_4:39347130-39347149 Msa0499890:exon 55.0%
GGTGGGTCGAGGATACTTGA+GGG - chr3_4:39347131-39347150 Msa0499890:exon 55.0%
TTCACCGCCGTCGCATCAAA+CGG + chr3_4:39347167-39347186 None:intergenic 55.0%
GACGGCGGTGAAGAGAGTTA+AGG - chr3_4:39347175-39347194 Msa0499890:CDS 55.0%
CGCCCTACAAAGTCAGAGAC+TGG + chr3_4:39347742-39347761 None:intergenic 55.0%
! CAGCAGCTAGTACACTGGCT+TGG + chr3_4:39347992-39348011 None:intergenic 55.0%
CTGTGCAGCAGCTAGTACAC+TGG + chr3_4:39347997-39348016 None:intergenic 55.0%
CATCAACCACCAAGGCCACA+AGG - chr3_4:39348078-39348097 Msa0499890:intron 55.0%
TCAACCACCAAGGCCACAAG+GGG - chr3_4:39348080-39348099 Msa0499890:intron 55.0%
CCTATCTCAAGGACTGCCCT+TGG + chr3_4:39348183-39348202 None:intergenic 55.0%
CCAAGGGCAGTCCTTGAGAT+AGG - chr3_4:39348180-39348199 Msa0499890:intron 55.0%
CTTGGGGGAGAACCAAGTGT+GGG - chr3_4:39348278-39348297 Msa0499890:intron 55.0%
!! GTTGTTCCAGGTGTCGGGTA+TGG + chr3_4:39348375-39348394 None:intergenic 55.0%
!! GTGTGGGGTTAGTGTTGGTG+AGG - chr3_4:39349154-39349173 Msa0499890:intron 55.0%
TTTCTTCGTCTGTGGGTGGG+TGG - chr3_4:39349644-39349663 Msa0499890:intron 55.0%
TTCTTCGTCTGTGGGTGGGT+GGG - chr3_4:39349645-39349664 Msa0499890:intron 55.0%
AATAGGTGACTGCCAACCCG+TGG - chr3_4:39349765-39349784 Msa0499890:intron 55.0%
ATAGGTGACTGCCAACCCGT+GGG - chr3_4:39349766-39349785 Msa0499890:intron 55.0%
CCTAGAAACATCCCACGGGT+TGG + chr3_4:39349780-39349799 None:intergenic 55.0%
CCAACCCGTGGGATGTTTCT+AGG - chr3_4:39349777-39349796 Msa0499890:intron 55.0%
GCACCCTAGAAACATCCCAC+GGG + chr3_4:39349784-39349803 None:intergenic 55.0%
GGCACCCTAGAAACATCCCA+CGG + chr3_4:39349785-39349804 None:intergenic 55.0%
!! TGGGATGTTTCTAGGGTGCC+AGG - chr3_4:39349785-39349804 Msa0499890:intron 55.0%
!! GATGTTTCTAGGGTGCCAGG+AGG - chr3_4:39349788-39349807 Msa0499890:intron 55.0%
AGGAGGATCATCCGGAGGAT+CGG - chr3_4:39349805-39349824 Msa0499890:CDS 55.0%
! AGGCAGCCGGCATCATTTTG+CGG - chr3_4:39349890-39349909 Msa0499890:intron 55.0%
CTTGAGACGCGCCCATATGT+TGG + chr3_4:39349932-39349951 None:intergenic 55.0%
GCGTCATCGCTTGATGCCAT+TGG - chr3_4:39349971-39349990 Msa0499890:intron 55.0%
GTTCATCGGTCGCTGATGCT+GGG - chr3_4:39350002-39350021 Msa0499890:intron 55.0%
GAAGTGGAGGACCTCGTTCA+CGG + chr3_4:39350476-39350495 None:intergenic 55.0%
GGCAACCCAAGCGAAAAGGA+TGG + chr3_4:39350620-39350639 None:intergenic 55.0%
TGCTGGCAACCCAAGCGAAA+AGG + chr3_4:39350624-39350643 None:intergenic 55.0%
! AGAGAGCGAGAGGGGTACAT+GGG + chr3_4:39350721-39350740 None:intergenic 55.0%
! AAGAGAGCGAGAGGGGTACA+TGG + chr3_4:39350722-39350741 None:intergenic 55.0%
TTGGACGAAGAGAGCGAGAG+GGG + chr3_4:39350729-39350748 None:intergenic 55.0%
GAATCCCGAGCCAAAGGGTT+AGG - chr3_4:39350892-39350911 Msa0499890:intron 55.0%
GGGACATATGCCCTTTCAGC+TGG - chr3_4:39351090-39351109 Msa0499890:intron 55.0%
! GAATAGCTTCAAGGAGGCGC+TGG - chr3_4:39351526-39351545 Msa0499890:CDS 55.0%
AAGCAGCTGAAGGAGCTGCA+GGG + chr3_4:39351574-39351593 None:intergenic 55.0%
TAAGCAGCTGAAGGAGCTGC+AGG + chr3_4:39351575-39351594 None:intergenic 55.0%
CAGTTCTGTGGCCTGCTCAA+TGG + chr3_4:39351930-39351949 None:intergenic 55.0%
AAGCCAACAGGAAGGCCAGT+CGG + chr3_4:39352650-39352669 None:intergenic 55.0%
GACTCGATCACACACAAGGG+TGG + chr3_4:39353118-39353137 None:intergenic 55.0%
CAGCGACTCGATCACACACA+AGG + chr3_4:39353122-39353141 None:intergenic 55.0%
CTTGTGTGTGATCGAGTCGC+TGG - chr3_4:39353120-39353139 Msa0499890:intron 55.0%
CAGGGAGAGCTACTGAGAGT+GGG - chr3_4:39354161-39354180 Msa0499890:CDS 55.0%
GAAAATGCGGTGGCTGAAGC+AGG - chr3_4:39354311-39354330 Msa0499890:CDS 55.0%
! GGAACGTGGGGTTTGGAGTG+TGG + chr3_4:39346769-39346788 None:intergenic 60.0%
GCGTGAGAGAGTGGAACGTG+GGG + chr3_4:39346781-39346800 None:intergenic 60.0%
! GGGGGTGTGTGAGAGTAGCT+TGG + chr3_4:39346833-39346852 None:intergenic 60.0%
GAGGATTTGAGAGGGGGGTG+CGG + chr3_4:39346865-39346884 None:intergenic 60.0%
AGTGCGAAGGGAGTGGCGAA+GGG + chr3_4:39346889-39346908 None:intergenic 60.0%
TAGTGCGAAGGGAGTGGCGA+AGG + chr3_4:39346890-39346909 None:intergenic 60.0%
GGGTGTTAGTGCGAAGGGAG+TGG + chr3_4:39346896-39346915 None:intergenic 60.0%
!! CGGAGAGGGTGTTAGTGCGA+AGG + chr3_4:39346902-39346921 None:intergenic 60.0%
GAATGAGGTCGGTTGCGGAG+AGG + chr3_4:39346917-39346936 None:intergenic 60.0%
GAAGGAACGGAGGTGGGGTT+CGG + chr3_4:39346967-39346986 None:intergenic 60.0%
TGGAGGAAGGAACGGAGGTG+GGG + chr3_4:39346972-39346991 None:intergenic 60.0%
GTGGAGGAAGGAACGGAGGT+GGG + chr3_4:39346973-39346992 None:intergenic 60.0%
ATTGGTCGGAAGGGAGGTGG+AGG + chr3_4:39346989-39347008 None:intergenic 60.0%
!! CGAGGAGGGATTGGTCGGAA+GGG + chr3_4:39346998-39347017 None:intergenic 60.0%
! CTGAGCGAGGAGGGATTGGT+CGG + chr3_4:39347003-39347022 None:intergenic 60.0%
GTCATGTGCCTGAGCGAGGA+GGG + chr3_4:39347012-39347031 None:intergenic 60.0%
CAAGGTCATGTGCCTGAGCG+AGG + chr3_4:39347016-39347035 None:intergenic 60.0%
CCGCAGCGATTCTACGGTCA+AGG + chr3_4:39347034-39347053 None:intergenic 60.0%
ATCGCTGCGGGCGAGGAAAT+TGG - chr3_4:39347044-39347063 Msa0499890:three_prime_UTR 60.0%
! CTGACATGCCGTCGACTGGT+GGG - chr3_4:39347114-39347133 Msa0499890:three_prime_UTR 60.0%
ATCCTCGACCCACCAGTCGA+CGG + chr3_4:39347125-39347144 None:intergenic 60.0%
AAGGACTCCCCTTGTGGCCT+TGG + chr3_4:39348090-39348109 None:intergenic 60.0%
!! AGGTTGTCGGGTTGAACCGG+TGG - chr3_4:39348200-39348219 Msa0499890:intron 60.0%
GCTTGGGGGAGAACCAAGTG+TGG - chr3_4:39348277-39348296 Msa0499890:intron 60.0%
GGACTTCCATACCCGACACC+TGG - chr3_4:39348366-39348385 Msa0499890:intron 60.0%
! AGGGTGCCAGGAGGATCATC+CGG - chr3_4:39349797-39349816 Msa0499890:CDS 60.0%
GATCCTCCGGATGATCCTCC+TGG + chr3_4:39349806-39349825 None:intergenic 60.0%
AACTGCAGCTGCCGATCCTC+CGG + chr3_4:39349819-39349838 None:intergenic 60.0%
! TGGTGGAAGTGTGAGGCAGC+CGG - chr3_4:39349877-39349896 Msa0499890:intron 60.0%
GGTTCATCGGTCGCTGATGC+TGG - chr3_4:39350001-39350020 Msa0499890:intron 60.0%
! GAGAGCGAGAGGGGTACATG+GGG + chr3_4:39350720-39350739 None:intergenic 60.0%
AGCAGCTGAAGGAGCTGCAG+GGG + chr3_4:39351573-39351592 None:intergenic 60.0%
TGAGCAGGCCACAGAACTGC+TGG - chr3_4:39351931-39351950 Msa0499890:intron 60.0%
CCAAGGCAGGTAGTCCAGCT+AGG + chr3_4:39352598-39352617 None:intergenic 60.0%
CCTAGCTGGACTACCTGCCT+TGG - chr3_4:39352595-39352614 Msa0499890:intron 60.0%
TCGAGTCGCTGGTCCGAGAT+CGG - chr3_4:39353131-39353150 Msa0499890:intron 60.0%
GCAGGGAGAGCTACTGAGAG+TGG - chr3_4:39354160-39354179 Msa0499890:CDS 60.0%
! GATTTGAGAGGGGGGTGCGG+TGG + chr3_4:39346862-39346881 None:intergenic 65.0%
GAAGGGAGTGGCGAAGGGTG+AGG + chr3_4:39346884-39346903 None:intergenic 65.0%
! GGAGGTGGGGTTCGGTCAGA+CGG + chr3_4:39346959-39346978 None:intergenic 65.0%
GGTGGAGGAAGGAACGGAGG+TGG + chr3_4:39346974-39346993 None:intergenic 65.0%
GGAGGTGGAGGAAGGAACGG+AGG + chr3_4:39346977-39346996 None:intergenic 65.0%
GTCGGAAGGGAGGTGGAGGA+AGG + chr3_4:39346985-39347004 None:intergenic 65.0%
!! GGGATTGGTCGGAAGGGAGG+TGG + chr3_4:39346992-39347011 None:intergenic 65.0%
!! GGAGGGATTGGTCGGAAGGG+AGG + chr3_4:39346995-39347014 None:intergenic 65.0%
!! GCGAGGAGGGATTGGTCGGA+AGG + chr3_4:39346999-39347018 None:intergenic 65.0%
CGACCAATCCCTCCTCGCTC+AGG - chr3_4:39347001-39347020 Msa0499890:three_prime_UTR 65.0%
GTGCCTGAGCGAGGAGGGAT+TGG + chr3_4:39347007-39347026 None:intergenic 65.0%
GGTCATGTGCCTGAGCGAGG+AGG + chr3_4:39347013-39347032 None:intergenic 65.0%
CCTCGCCCGCAGCGATTCTA+CGG + chr3_4:39347040-39347059 None:intergenic 65.0%
ACGGCTGACATGCCGTCGAC+TGG - chr3_4:39347110-39347129 Msa0499890:three_prime_UTR 65.0%
! GCTGACATGCCGTCGACTGG+TGG - chr3_4:39347113-39347132 Msa0499890:three_prime_UTR 65.0%
TCGGCCGCCGTTTGATGCGA+CGG - chr3_4:39347157-39347176 Msa0499890:CDS 65.0%
ACCGCCGTCGCATCAAACGG+CGG + chr3_4:39347164-39347183 None:intergenic 65.0%
! GACTCCCCTTGTGGCCTTGG+TGG + chr3_4:39348087-39348106 None:intergenic 65.0%
TCGTCTGTGGGTGGGTGGGT+TGG - chr3_4:39349649-39349668 Msa0499890:intron 65.0%
GTGCCAGGAGGATCATCCGG+AGG - chr3_4:39349800-39349819 Msa0499890:CDS 65.0%
CGGCAGCTGCAGTTTCTGCC+AGG - chr3_4:39349825-39349844 Msa0499890:CDS 65.0%
!! GGACCGACTGGCCTTCCTGT+TGG - chr3_4:39352644-39352663 Msa0499890:intron 65.0%
! GGGGTGCGGTGGTAGGTTGG+GGG + chr3_4:39346851-39346870 None:intergenic 70.0%
! GGGGGTGCGGTGGTAGGTTG+GGG + chr3_4:39346852-39346871 None:intergenic 70.0%
! GGGGGGTGCGGTGGTAGGTT+GGG + chr3_4:39346853-39346872 None:intergenic 70.0%
! AGGGGGGTGCGGTGGTAGGT+TGG + chr3_4:39346854-39346873 None:intergenic 70.0%
! TGAGAGGGGGGTGCGGTGGT+AGG + chr3_4:39346858-39346877 None:intergenic 70.0%
CAGACGGAGGCGGGTGAGGT+GGG + chr3_4:39346943-39346962 None:intergenic 70.0%
TCAGACGGAGGCGGGTGAGG+TGG + chr3_4:39346944-39346963 None:intergenic 70.0%
! GGGTTCGGTCAGACGGAGGC+GGG + chr3_4:39346952-39346971 None:intergenic 70.0%
! GGGGTTCGGTCAGACGGAGG+CGG + chr3_4:39346953-39346972 None:intergenic 70.0%
! GGTGGGGTTCGGTCAGACGG+AGG + chr3_4:39346956-39346975 None:intergenic 70.0%
CCGTAGAATCGCTGCGGGCG+AGG - chr3_4:39347037-39347056 Msa0499890:three_prime_UTR 70.0%
! TGCCGTCGACTGGTGGGTCG+AGG - chr3_4:39347120-39347139 Msa0499890:three_prime_UTR 70.0%
GCCGCCGTTTGATGCGACGG+CGG - chr3_4:39347160-39347179 Msa0499890:CDS 70.0%
CGGTCAGACGGAGGCGGGTG+AGG + chr3_4:39346947-39346966 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 39346674 39354725 39346674 ID=Msa0499890;Name=Msa0499890
chr3_4 mRNA 39346674 39354725 39346674 ID=Msa0499890-mRNA-1;Parent=Msa0499890;Name=Msa0499890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=79|0.8|0.81|1|0.7|0.72|11|425|477
chr3_4 exon 39346674 39346747 39346674 ID=Msa0499890-mRNA-1:exon:8071;Parent=Msa0499890-mRNA-1
chr3_4 exon 39346775 39346823 39346775 ID=Msa0499890-mRNA-1:exon:8070;Parent=Msa0499890-mRNA-1
chr3_4 exon 39346844 39347235 39346844 ID=Msa0499890-mRNA-1:exon:8069;Parent=Msa0499890-mRNA-1
chr3_4 exon 39348702 39348815 39348702 ID=Msa0499890-mRNA-1:exon:8068;Parent=Msa0499890-mRNA-1
chr3_4 exon 39349660 39349709 39349660 ID=Msa0499890-mRNA-1:exon:8067;Parent=Msa0499890-mRNA-1
chr3_4 exon 39349797 39349890 39349797 ID=Msa0499890-mRNA-1:exon:8066;Parent=Msa0499890-mRNA-1
chr3_4 exon 39350253 39350330 39350253 ID=Msa0499890-mRNA-1:exon:8065;Parent=Msa0499890-mRNA-1
chr3_4 exon 39350916 39351095 39350916 ID=Msa0499890-mRNA-1:exon:8064;Parent=Msa0499890-mRNA-1
chr3_4 exon 39351318 39351478 39351318 ID=Msa0499890-mRNA-1:exon:8063;Parent=Msa0499890-mRNA-1
chr3_4 exon 39351488 39351629 39351488 ID=Msa0499890-mRNA-1:exon:8062;Parent=Msa0499890-mRNA-1
chr3_4 exon 39354122 39354725 39354122 ID=Msa0499890-mRNA-1:exon:8061;Parent=Msa0499890-mRNA-1
chr3_4 five_prime_UTR 39354647 39354725 39354647 ID=Msa0499890-mRNA-1:five_prime_utr;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39354122 39354646 39354122 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39351488 39351629 39351488 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39351318 39351478 39351318 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39350916 39351095 39350916 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39350253 39350330 39350253 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39349797 39349890 39349797 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39349660 39349709 39349660 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39348702 39348815 39348702 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 CDS 39347146 39347235 39347146 ID=Msa0499890-mRNA-1:cds;Parent=Msa0499890-mRNA-1
chr3_4 three_prime_UTR 39346844 39347145 39346844 ID=Msa0499890-mRNA-1:three_prime_utr;Parent=Msa0499890-mRNA-1
chr3_4 three_prime_UTR 39346775 39346823 39346775 ID=Msa0499890-mRNA-1:three_prime_utr;Parent=Msa0499890-mRNA-1
chr3_4 three_prime_UTR 39346674 39346747 39346674 ID=Msa0499890-mRNA-1:three_prime_utr;Parent=Msa0499890-mRNA-1
Gene Sequence

>Msa0499890

ATGAAAATGCTATCCACACTCCAAACCCCACGTTCCACTCTCTCACGCTTCTCCCTTCCATCATCCACAAGCACCACCCAAGCTACTCTCACACACCCCCAACCTACCACCGCACCCCCCTCTCAAATCCTCACCCTTCGCCACTCCCTTCGCACTAACACCCTCTCCGCAACCGACCTCATTCAATCCCACCTCACCCGCCTCCGTCTGACCGAACCCCACCTCCGTTCCTTCCTCCACCTCCCTTCCGACCAATCCCTCCTCGCTCAGGCACATGACCTTGACCGTAGAATCGCTGCGGGCGAGGAAATTGGTCCTCTTGCTGGTGTTCTTGTTGCTGTTAAGGATAATATTTGTACGGCTGACATGCCGTCGACTGGTGGGTCGAGGATACTTGAGGGTTATCGGCCGCCGTTTGATGCGACGGCGGTGAAGAGAGTTAAGGAATTGGGTGGGATTGTTGTTGGGAAGACGAATATGGATGAGTTTGGTATGGGGAGTACTACTGAAGCCTCTGCATTTCAGGTGACTGCCAACCCGTGGGATGTTTCTAGGGTGCCAGGAGGATCATCCGGAGGATCGGCAGCTGCAGTTTCTGCCAGGCAGTGTGTTGTATCGTTGGGAAGTGATACTGGTGGAAGTGTGAGGCAGCCGGCATCATTTTGCGGTTTGAAGCCAACATATGGGCGCGTCTCAAGATTTGGACTCATGGCGTATGCGTCATCGCTTGATGCCATTGGCTGCTTTGGTTCATCGGTCGCTGATGCTGGGATTCTCCTCCATGCAATTGCTGGTCATGATAGATTTGATGCCACATCAAGTAAGCAGGAGGTGCCCAACTTTCTATCTCATTTTGACTATGCAAGTTCTTTGGAAAGTAAGCCCTTGAAAGGACTGAGAATTGGTTTGATTCTTGAAACTATTGAAGATGGTGTTGATGCTGGAGTAGTTTCTGCAATTCGTGATGCTGCTTCACACTTTGAGGCATTAGGATGCTCCGTGAACGAGGTGAAAATGAGAATTTTGATGGGGACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAACGAGCGCAGCAGGTGAGAACCATTATAAGGAATAGCTTCAAGGAGGCGCTGGACCAATATGATATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTGAAAAGAAAAATGATCCTTTGGCTATGTATGCTGGTGACATCATGACTGTAAATGTCAACCTAGCTGGACTACCTGCCTTGGTTTTACCATGTGGATTTATTGAGAATGGACCGACTGGCCTTCCTGTTGGCTTGCAAATGATTGGTGCAGCGTTTAATGAGGGAGAGCTACTGAGAGTGGGACATATCTTTGAGCAAACTCTTGAGAATTGCAGATTTGTTCCACCAATCGTAGCTGATAGCGTTGAATAA
Protein sequence

>Msa0499890

MKMLSTLQTPRSTLSRFSLPSSTSTTQATLTHPQPTTAPPSQILTLRHSLRTNTLSATDLIQSHLTRLRLTEPHLRSFLHLPSDQSLLAQAHDLDRRIAAGEEIGPLAGVLVAVKDNICTADMPSTGGSRILEGYRPPFDATAVKRVKELGGIVVGKTNMDEFGMGSTTEASAFQVTANPWDVSRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADAGILLHAIAGHDRFDATSSKQEVPNFLSHFDYASSLESKPLKGLRIGLILETIEDGVDAGVVSAIRDAASHFEALGCSVNEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALDQYDILISPAAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFIENGPTGLPVGLQMIGAAFNEGELLRVGHIFEQTLENCRFVPPIVADSVE*