AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420300 MtrunA17_Chr3g0119811 97.209 215 6 0 1 215 1 215 1.72e-150 416
Msa0420300 MtrunA17_Chr1g0179011 44.286 140 75 2 66 202 5 144 2.09e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420300 AT1G32990.1 80.808 198 35 3 20 215 25 221 5.41e-105 302
Msa0420300 AT5G51610.1 51.124 178 42 2 35 212 46 178 1.95e-46 152
Msa0420300 AT4G35490.2 47.101 138 70 2 68 202 13 150 2.68e-31 112
Msa0420300 AT4G35490.1 47.101 138 70 2 68 202 13 150 2.68e-31 112

Find 79 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGGCACAGCGGCAAATA+TGG 0.212659 3_2:+68752506 Msa0420300:CDS
TGCTTTGCCACCACCGGGTT+TGG 0.217256 3_2:-68750629 None:intergenic
TTCAAAAGGTGTTAACATTA+TGG 0.218357 3_2:+68750827 Msa0420300:CDS
GTATTTAAATTTAAATATAA+TGG 0.252953 3_2:-68752712 None:intergenic
GCTTTGCCACCACCGGGTTT+GGG 0.332344 3_2:-68750628 None:intergenic
TGGAGCCGGTGTCGCCTTCC+CGG 0.342001 3_2:-68750784 None:intergenic
CCACCGGTTGGACCGGCTCT+TGG 0.343636 3_2:+68750804 Msa0420300:CDS
TGAGAGGTGGGAAGGGAAAG+GGG 0.365846 3_2:-68750574 None:intergenic
AGGAAGAGCAAGTAGAGTTT+AGG 0.384822 3_2:+68750370 Msa0420300:five_prime_UTR
GTTCTACTTCTTAAAGCTGC+TGG 0.386964 3_2:+68751061 Msa0420300:CDS
GTTCAAAAGGGATACGCCAC+TGG 0.390614 3_2:-68750545 None:intergenic
GAGAGGTGGGAAGGGAAAGG+GGG 0.391568 3_2:-68750573 None:intergenic
TACAACAATTGCTTCTGCTT+GGG 0.394575 3_2:-68752558 None:intergenic
TTGAGAGGTGGGAAGGGAAA+GGG 0.401348 3_2:-68750575 None:intergenic
TTGTTGTGTAGGGGTGGAAA+AGG 0.402114 3_2:+68752362 Msa0420300:intron
TTTCTTTGCTTTGCCACCAC+CGG 0.406080 3_2:-68750635 None:intergenic
TTCAACGGGAATGATATAAC+CGG 0.425199 3_2:-68750889 None:intergenic
AGAGGTGGGAAGGGAAAGGG+GGG 0.428908 3_2:-68750572 None:intergenic
TTCTGCTTGGGTTCAAGAAT+AGG 0.432814 3_2:-68752546 None:intergenic
TTCTTTGCTTTGCCACCACC+GGG 0.435691 3_2:-68750634 None:intergenic
CACACCAAGTACCAGCTTTG+TGG 0.444391 3_2:-68752757 None:intergenic
AGTAGAAAACATAGAAGAAG+AGG 0.444829 3_2:-68750500 None:intergenic
ACCGGCTCCACCGGTTGGAC+CGG 0.445154 3_2:+68750797 Msa0420300:CDS
AATTGCTTCTGAGAAGTTGC+CGG 0.445935 3_2:+68752443 Msa0420300:CDS
GCCGGTCCAACCGGTGGAGC+CGG 0.447208 3_2:-68750798 None:intergenic
TTACAACAATTGCTTCTGCT+TGG 0.457628 3_2:-68752559 None:intergenic
ATAAAGCTGGCTCTTGAAGC+CGG 0.458425 3_2:+68750765 Msa0420300:CDS
GAACCAAGAGCCGGTCCAAC+CGG 0.463306 3_2:-68750807 None:intergenic
GGACCGGCTCTTGGTTCAAA+AGG 0.467349 3_2:+68750813 Msa0420300:CDS
GCAGGCACAGCGGCAAATAT+GGG 0.470157 3_2:+68752507 Msa0420300:CDS
TCAAAGACAGTGATTTCAAC+GGG 0.477736 3_2:-68750903 None:intergenic
CAAAGTGGAGTTGAGTTGTT+CGG 0.481261 3_2:-68750418 None:intergenic
TGTTGTGTAGGGGTGGAAAA+GGG 0.492679 3_2:+68752363 Msa0420300:intron
TTGCTCACGAAGGATTGAAA+TGG 0.494981 3_2:+68750438 Msa0420300:exon
TCAGCCACAAAGCTGGTACT+TGG 0.497555 3_2:+68752753 Msa0420300:three_prime_UTR
GTAGTAGTTTATTGTTGTGA+AGG 0.497565 3_2:+68750350 Msa0420300:five_prime_UTR
ATGGTCTCACAATTTAAGTC+CGG 0.511904 3_2:-68752462 None:intergenic
ATTAATATCAGCCACAAAGC+TGG 0.515910 3_2:+68752746 Msa0420300:three_prime_UTR
TTTGAGAGGTGGGAAGGGAA+AGG 0.518269 3_2:-68750576 None:intergenic
GCTCCTCCCAAACCCGGTGG+TGG 0.522421 3_2:+68750622 Msa0420300:CDS
TAAAGCTGGCTCTTGAAGCC+GGG 0.523483 3_2:+68750766 Msa0420300:CDS
GAAGGCGACACCGGCTCCAC+CGG 0.524077 3_2:+68750788 Msa0420300:CDS
ACCGGGTTTGGGAGGAGCCA+TGG 0.525469 3_2:-68750617 None:intergenic
GCCATGGCTCCTCCCAAACC+CGG 0.532943 3_2:+68750616 Msa0420300:CDS
TTAAGAAGTAGAACAGAAGC+AGG 0.535760 3_2:-68751052 None:intergenic
TGAAGCCGGGAAGGCGACAC+CGG 0.536862 3_2:+68750779 Msa0420300:CDS
TTGCCACCACCGGGTTTGGG+AGG 0.539113 3_2:-68750625 None:intergenic
TGCACTGTTGTATTGTGGTG+TGG 0.539862 3_2:+68752871 Msa0420300:three_prime_UTR
AGCGTCTTTGAGAGGTGGGA+AGG 0.541953 3_2:-68750582 None:intergenic
CACAAAGCTGGTACTTGGTG+TGG 0.544208 3_2:+68752758 Msa0420300:three_prime_UTR
TCATTTGCACTGTTGTATTG+TGG 0.547732 3_2:+68752866 Msa0420300:three_prime_UTR
TTAAAGCGTCTTTGAGAGGT+GGG 0.557459 3_2:-68750586 None:intergenic
TTTAAAGCGTCTTTGAGAGG+TGG 0.557946 3_2:-68750587 None:intergenic
TGCTTGGGTTCAAGAATAGG+AGG 0.562010 3_2:-68752543 None:intergenic
TTCAAAAGGGATACGCCACT+GGG 0.573871 3_2:-68750544 None:intergenic
GCGACACCGGCTCCACCGGT+TGG 0.574069 3_2:+68750792 Msa0420300:CDS
GCGTCTTTGAGAGGTGGGAA+GGG 0.575110 3_2:-68750581 None:intergenic
AGTGGTTGGAATCATAAAGC+TGG 0.577839 3_2:+68750752 Msa0420300:intron
ATCAAAGACAGTGATTTCAA+CGG 0.578769 3_2:-68750904 None:intergenic
AAAGGGTTCAAAAGACCCTA+AGG 0.579244 3_2:+68752380 Msa0420300:CDS
CCAAGAGCCGGTCCAACCGG+TGG 0.580423 3_2:-68750804 None:intergenic
TCAACGGGAATGATATAACC+GGG 0.582949 3_2:-68750888 None:intergenic
GCTGGCTCTTGAAGCCGGGA+AGG 0.585779 3_2:+68750770 Msa0420300:CDS
CGACGGAGTGCAGAAGAGAG+TGG 0.589818 3_2:-68750464 None:intergenic
GGTGGTGGCAAAGCAAAGAA+AGG 0.594161 3_2:+68750637 Msa0420300:CDS
AATTCTCATAGCTGATTCGA+TGG 0.598811 3_2:-68752481 None:intergenic
CAACTCCACTTTGCTCACGA+AGG 0.608702 3_2:+68750428 Msa0420300:five_prime_UTR
ACGCTTTAAAATCACTGCCA+TGG 0.609370 3_2:+68750600 Msa0420300:CDS
TCAGCTATGAGAATTATAGC+AGG 0.610466 3_2:+68752489 Msa0420300:CDS
TCAATCCTTCGTGAGCAAAG+TGG 0.610935 3_2:-68750433 None:intergenic
AGAAGTAGAACAGAAGCAGG+TGG 0.625937 3_2:-68751049 None:intergenic
GAGGAAGAAGAACATAGCGA+CGG 0.626859 3_2:-68750481 None:intergenic
AAGTAGAGTTTAGGATAGCG+CGG 0.643728 3_2:+68750379 Msa0420300:five_prime_UTR
CTGTGTGATCTAGTACCACA+AGG 0.651524 3_2:-68752616 None:intergenic
GCTAGAACTGCTGATAAACC+CGG 0.652419 3_2:+68750870 Msa0420300:CDS
ATGGCTCCTCCCAAACCCGG+TGG 0.666423 3_2:+68750619 Msa0420300:CDS
AAATTATCCTTAAAACCCAG+TGG 0.686059 3_2:+68750529 Msa0420300:CDS
GAGAATTATAGCAGGCACAG+CGG 0.702772 3_2:+68752497 Msa0420300:CDS
CTTGTGGTACTAGATCACAC+AGG 0.786415 3_2:+68752617 Msa0420300:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACATATCATAATATCAAA+GGG - chr3_2:68751092-68751111 None:intergenic 15.0%
!! ATAACATATCATAATATCAA+AGG - chr3_2:68751093-68751112 None:intergenic 15.0%
!! TGAACTATATTAAAATTGTT+AGG + chr3_2:68751642-68751661 Msa0420300:intron 15.0%
!! ATACTGTATAAAAAAAAATC+AGG - chr3_2:68752099-68752118 None:intergenic 15.0%
!! ACAAACAAAATCGAAATTAA+TGG - chr3_2:68750683-68750702 None:intergenic 20.0%
!!! TATTTTGTTGTGTTATTTTC+AGG + chr3_2:68750997-68751016 Msa0420300:intron 20.0%
!! AACATATCATAATATCAAAG+GGG - chr3_2:68751091-68751110 None:intergenic 20.0%
!! ATTCTAACAAATTATATCAC+AGG - chr3_2:68751123-68751142 None:intergenic 20.0%
!! AGTTGTAATATATGAAACAT+AGG + chr3_2:68751215-68751234 Msa0420300:intron 20.0%
!!! ATTAATTTAGAGTAGAGTTA+AGG + chr3_2:68751545-68751564 Msa0420300:intron 20.0%
!! TATGTAATAGACTTTATAGT+TGG + chr3_2:68752116-68752135 Msa0420300:intron 20.0%
!! ATGTAATAGACTTTATAGTT+GGG + chr3_2:68752117-68752136 Msa0420300:intron 20.0%
!!! TTCAAAAGGTGTTAACATTA+TGG + chr3_2:68750827-68750846 Msa0420300:CDS 25.0%
! ATGAAATATAGCAATGACTA+GGG - chr3_2:68751494-68751513 None:intergenic 25.0%
! AATGAAATATAGCAATGACT+AGG - chr3_2:68751495-68751514 None:intergenic 25.0%
! CTCTAAATTAATGACATTTG+AGG - chr3_2:68751537-68751556 None:intergenic 25.0%
! AGGATCATTGAAACTTAAAT+AGG + chr3_2:68751565-68751584 Msa0420300:intron 25.0%
! GGATCATTGAAACTTAAATA+GGG + chr3_2:68751566-68751585 Msa0420300:intron 25.0%
! ATTGAAACTTAAATAGGGTA+AGG + chr3_2:68751571-68751590 Msa0420300:intron 25.0%
! CTAAATATCCAATATCAGTA+TGG - chr3_2:68751671-68751690 None:intergenic 25.0%
!!! ATGATCTATTTGTTTTAAGC+TGG + chr3_2:68751770-68751789 Msa0420300:intron 25.0%
!! ACACAGTATTTTCATATCAT+TGG - chr3_2:68751886-68751905 None:intergenic 25.0%
! ATTAAAACACCTAGTAAACA+GGG - chr3_2:68752013-68752032 None:intergenic 25.0%
! AAAAAAAATCAGGTACAGAA+AGG - chr3_2:68752089-68752108 None:intergenic 25.0%
! AAGATAGTAGCAGAAAATAT+TGG + chr3_2:68752147-68752166 Msa0420300:intron 25.0%
! AGATAGTAGCAGAAAATATT+GGG + chr3_2:68752148-68752167 Msa0420300:intron 25.0%
!!! TATTGGTTTGATAGATTATC+AGG + chr3_2:68752262-68752281 Msa0420300:intron 25.0%
GTAGTAGTTTATTGTTGTGA+AGG + chr3_2:68750350-68750369 Msa0420300:five_prime_UTR 30.0%
AGTAGAAAACATAGAAGAAG+AGG - chr3_2:68750503-68750522 None:intergenic 30.0%
AAATTATCCTTAAAACCCAG+TGG + chr3_2:68750529-68750548 Msa0420300:CDS 30.0%
ATCAAAGACAGTGATTTCAA+CGG - chr3_2:68750907-68750926 None:intergenic 30.0%
ATTTACTAGAGATGCATTAG+TGG - chr3_2:68751175-68751194 None:intergenic 30.0%
CTAGTAAATAAGCCTGTTAT+TGG + chr3_2:68751186-68751205 Msa0420300:intron 30.0%
AAGTGATTGTATGTAATGAC+TGG + chr3_2:68751303-68751322 Msa0420300:intron 30.0%
TTATACTTATGCCCAAGTAT+TGG - chr3_2:68751344-68751363 None:intergenic 30.0%
GCTAACTATAAGACACTATT+GGG + chr3_2:68751389-68751408 Msa0420300:intron 30.0%
CTAATGACTAATAACTTTCG+TGG - chr3_2:68751445-68751464 None:intergenic 30.0%
GAAAGTTATTAGTCATTAGC+TGG + chr3_2:68751446-68751465 Msa0420300:intron 30.0%
ATTAGTCATTAGCTGGAATT+TGG + chr3_2:68751453-68751472 Msa0420300:intron 30.0%
! AAATTAATGACATTTGAGGC+AGG - chr3_2:68751533-68751552 None:intergenic 30.0%
ATATAGTTCACTTAGTTGCA+AGG - chr3_2:68751632-68751651 None:intergenic 30.0%
AAATTGAATCACAGAGCAAA+CGG - chr3_2:68751743-68751762 None:intergenic 30.0%
! TTTTAAGCTGGATCTAATCA+AGG + chr3_2:68751782-68751801 Msa0420300:intron 30.0%
TTTAAGCTGGATCTAATCAA+GGG + chr3_2:68751783-68751802 Msa0420300:intron 30.0%
!!! AGGGAATGAGATTTTTTTAG+TGG + chr3_2:68751937-68751956 Msa0420300:intron 30.0%
!!! TTTTTTAGTGGTTACATTCG+AGG + chr3_2:68751949-68751968 Msa0420300:intron 30.0%
TTAAAACACCTAGTAAACAG+GGG - chr3_2:68752012-68752031 None:intergenic 30.0%
CATTAAAACACCTAGTAAAC+AGG - chr3_2:68752014-68752033 None:intergenic 30.0%
!! CTGTTTACTAGGTGTTTTAA+TGG + chr3_2:68752012-68752031 Msa0420300:intron 30.0%
!!! TTACTAGGTGTTTTAATGGA+TGG + chr3_2:68752016-68752035 Msa0420300:intron 30.0%
!!! AGGTAAGTTTTGTTCAAGAT+GGG - chr3_2:68752069-68752088 None:intergenic 30.0%
!!! AAGGTAAGTTTTGTTCAAGA+TGG - chr3_2:68752070-68752089 None:intergenic 30.0%
AAAACGAAGCAGATATGTTA+AGG + chr3_2:68752238-68752257 Msa0420300:intron 30.0%
AGCAGATATGTTAAGGTTAT+TGG + chr3_2:68752245-68752264 Msa0420300:intron 30.0%
TCCAAACTCTATTATACTGA+TGG + chr3_2:68752333-68752352 Msa0420300:intron 30.0%
TCCATCAGTATAATAGAGTT+TGG - chr3_2:68752337-68752356 None:intergenic 30.0%
!!! GATTTTAAAGCGTCTTTGAG+AGG - chr3_2:68750593-68750612 None:intergenic 35.0%
TTAGAACATGTTTGTGTCTG+TGG + chr3_2:68750724-68750743 Msa0420300:intron 35.0%
TTCAACGGGAATGATATAAC+CGG - chr3_2:68750892-68750911 None:intergenic 35.0%
TCAAAGACAGTGATTTCAAC+GGG - chr3_2:68750906-68750925 None:intergenic 35.0%
TTAAGAAGTAGAACAGAAGC+AGG - chr3_2:68751055-68751074 None:intergenic 35.0%
ACAACTTGTAGACCAATAAC+AGG - chr3_2:68751201-68751220 None:intergenic 35.0%
TACCATAGTCTATATAGTGC+CGG - chr3_2:68751266-68751285 None:intergenic 35.0%
TGGGCATAAGTATAAAGTGT+CGG + chr3_2:68751349-68751368 Msa0420300:intron 35.0%
GGCTAACTATAAGACACTAT+TGG + chr3_2:68751388-68751407 Msa0420300:intron 35.0%
ACTATAAGACACTATTGGGT+CGG + chr3_2:68751393-68751412 Msa0420300:intron 35.0%
TTAGGCATCCATACTGATAT+TGG + chr3_2:68751660-68751679 Msa0420300:intron 35.0%
AGAATTTCTCCTACACTACA+AGG + chr3_2:68751917-68751936 Msa0420300:intron 35.0%
GAATTTCTCCTACACTACAA+GGG + chr3_2:68751918-68751937 Msa0420300:intron 35.0%
! ACATTCGAGGTATTCTTACA+AGG + chr3_2:68751962-68751981 Msa0420300:intron 35.0%
! TCAAGATGGGGAGATTTTAA+TGG - chr3_2:68752056-68752075 None:intergenic 35.0%
!!! GGTAAGTTTTGTTCAAGATG+GGG - chr3_2:68752068-68752087 None:intergenic 35.0%
GTCTTGAAATATGATCAGTC+TGG + chr3_2:68752190-68752209 Msa0420300:intron 35.0%
AGATTCACTCATAAACAGGA+TGG - chr3_2:68752301-68752320 None:intergenic 35.0%
CACTAGATTCACTCATAAAC+AGG - chr3_2:68752305-68752324 None:intergenic 35.0%
!! ATGGACTGATTTGTTGTGTA+GGG + chr3_2:68752352-68752371 Msa0420300:intron 35.0%
!!! TTCCTACTTTTTGTGCCTTA+GGG - chr3_2:68752398-68752417 None:intergenic 35.0%
!!! TTTCCTACTTTTTGTGCCTT+AGG - chr3_2:68752399-68752418 None:intergenic 35.0%
ATGGTCTCACAATTTAAGTC+CGG - chr3_2:68752465-68752484 None:intergenic 35.0%
!! AATTCTCATAGCTGATTCGA+TGG - chr3_2:68752484-68752503 None:intergenic 35.0%
TCAGCTATGAGAATTATAGC+AGG + chr3_2:68752489-68752508 Msa0420300:CDS 35.0%
TACAACAATTGCTTCTGCTT+GGG - chr3_2:68752561-68752580 None:intergenic 35.0%
TTACAACAATTGCTTCTGCT+TGG - chr3_2:68752562-68752581 None:intergenic 35.0%
! AAGGACTTTTTACACTTGGA+GGG - chr3_2:68752600-68752619 None:intergenic 35.0%
ATTAATATCAGCCACAAAGC+TGG + chr3_2:68752746-68752765 Msa0420300:three_prime_UTR 35.0%
TCATTTGCACTGTTGTATTG+TGG + chr3_2:68752866-68752885 Msa0420300:three_prime_UTR 35.0%
AGGAAGAGCAAGTAGAGTTT+AGG + chr3_2:68750370-68750389 Msa0420300:five_prime_UTR 40.0%
! AAGTAGAGTTTAGGATAGCG+CGG + chr3_2:68750379-68750398 Msa0420300:five_prime_UTR 40.0%
! CAAAGTGGAGTTGAGTTGTT+CGG - chr3_2:68750421-68750440 None:intergenic 40.0%
TTGCTCACGAAGGATTGAAA+TGG + chr3_2:68750438-68750457 Msa0420300:exon 40.0%
!!! AAGGGGGGTTTTGTTCAAAA+GGG - chr3_2:68750560-68750579 None:intergenic 40.0%
!!! AAAGGGGGGTTTTGTTCAAA+AGG - chr3_2:68750561-68750580 None:intergenic 40.0%
! TTAAAGCGTCTTTGAGAGGT+GGG - chr3_2:68750589-68750608 None:intergenic 40.0%
! TTTAAAGCGTCTTTGAGAGG+TGG - chr3_2:68750590-68750609 None:intergenic 40.0%
!! ACGCTTTAAAATCACTGCCA+TGG + chr3_2:68750600-68750619 Msa0420300:CDS 40.0%
AGTGGTTGGAATCATAAAGC+TGG + chr3_2:68750752-68750771 Msa0420300:intron 40.0%
TCAACGGGAATGATATAACC+GGG - chr3_2:68750891-68750910 None:intergenic 40.0%
GTTCTACTTCTTAAAGCTGC+TGG + chr3_2:68751061-68751080 Msa0420300:CDS 40.0%
AGACACGTGTTCCAATACTT+GGG + chr3_2:68751330-68751349 Msa0420300:intron 40.0%
! TAATGACATTTGAGGCAGGA+AGG - chr3_2:68751529-68751548 None:intergenic 40.0%
ATCTCATTCCCTTGTAGTGT+AGG - chr3_2:68751929-68751948 None:intergenic 40.0%
AAGGCTACATCCACTACTTA+TGG + chr3_2:68751981-68752000 Msa0420300:intron 40.0%
!! GATGGACTGATTTGTTGTGT+AGG + chr3_2:68752351-68752370 Msa0420300:intron 40.0%
!! TGGACTGATTTGTTGTGTAG+GGG + chr3_2:68752353-68752372 Msa0420300:intron 40.0%
AAAGGGTTCAAAAGACCCTA+AGG + chr3_2:68752380-68752399 Msa0420300:CDS 40.0%
! AATTGCTTCTGAGAAGTTGC+CGG + chr3_2:68752443-68752462 Msa0420300:CDS 40.0%
TTCTGCTTGGGTTCAAGAAT+AGG - chr3_2:68752549-68752568 None:intergenic 40.0%
! CAAGGACTTTTTACACTTGG+AGG - chr3_2:68752601-68752620 None:intergenic 40.0%
! CCACAAGGACTTTTTACACT+TGG - chr3_2:68752604-68752623 None:intergenic 40.0%
CCAAGTGTAAAAAGTCCTTG+TGG + chr3_2:68752601-68752620 Msa0420300:three_prime_UTR 40.0%
TCAATCCTTCGTGAGCAAAG+TGG - chr3_2:68750436-68750455 None:intergenic 45.0%
GAGGAAGAAGAACATAGCGA+CGG - chr3_2:68750484-68750503 None:intergenic 45.0%
TTCAAAAGGGATACGCCACT+GGG - chr3_2:68750547-68750566 None:intergenic 45.0%
TTTCTTTGCTTTGCCACCAC+CGG - chr3_2:68750638-68750657 None:intergenic 45.0%
TTTGTGTCTGTGGCAAACAG+TGG + chr3_2:68750734-68750753 Msa0420300:intron 45.0%
! ATAAAGCTGGCTCTTGAAGC+CGG + chr3_2:68750765-68750784 Msa0420300:CDS 45.0%
! ACACCTTTTGAACCAAGAGC+CGG - chr3_2:68750819-68750838 None:intergenic 45.0%
GCTAGAACTGCTGATAAACC+CGG + chr3_2:68750870-68750889 Msa0420300:CDS 45.0%
AGAAGTAGAACAGAAGCAGG+TGG - chr3_2:68751052-68751071 None:intergenic 45.0%
CACCGGCACTATATAGACTA+TGG + chr3_2:68751261-68751280 Msa0420300:intron 45.0%
CAGACACGTGTTCCAATACT+TGG + chr3_2:68751329-68751348 Msa0420300:intron 45.0%
!! GTCGGTGCTACATAGTTGTA+AGG + chr3_2:68751367-68751386 Msa0420300:intron 45.0%
GCTGGATCTAATCAAGGGTT+AGG + chr3_2:68751788-68751807 Msa0420300:intron 45.0%
!! ACTGATTTGTTGTGTAGGGG+TGG + chr3_2:68752356-68752375 Msa0420300:intron 45.0%
TTGTTGTGTAGGGGTGGAAA+AGG + chr3_2:68752362-68752381 Msa0420300:intron 45.0%
TGTTGTGTAGGGGTGGAAAA+GGG + chr3_2:68752363-68752382 Msa0420300:intron 45.0%
GACCCTAAGGCACAAAAAGT+AGG + chr3_2:68752393-68752412 Msa0420300:CDS 45.0%
GAGAATTATAGCAGGCACAG+CGG + chr3_2:68752497-68752516 Msa0420300:CDS 45.0%
TGCTTGGGTTCAAGAATAGG+AGG - chr3_2:68752546-68752565 None:intergenic 45.0%
CTGTGTGATCTAGTACCACA+AGG - chr3_2:68752619-68752638 None:intergenic 45.0%
CTTGTGGTACTAGATCACAC+AGG + chr3_2:68752617-68752636 Msa0420300:three_prime_UTR 45.0%
TGCACTGTTGTATTGTGGTG+TGG + chr3_2:68752871-68752890 Msa0420300:three_prime_UTR 45.0%
!! GTATTTAAATTTAAATATAA+TGG - chr3_2:68752715-68752734 None:intergenic 5.0%
CAACTCCACTTTGCTCACGA+AGG + chr3_2:68750428-68750447 Msa0420300:five_prime_UTR 50.0%
! GGATACGCCACTGGGTTTTA+AGG - chr3_2:68750539-68750558 None:intergenic 50.0%
GTTCAAAAGGGATACGCCAC+TGG - chr3_2:68750548-68750567 None:intergenic 50.0%
TTGAGAGGTGGGAAGGGAAA+GGG - chr3_2:68750578-68750597 None:intergenic 50.0%
TTTGAGAGGTGGGAAGGGAA+AGG - chr3_2:68750579-68750598 None:intergenic 50.0%
TTCTTTGCTTTGCCACCACC+GGG - chr3_2:68750637-68750656 None:intergenic 50.0%
! GGTGGTGGCAAAGCAAAGAA+AGG + chr3_2:68750637-68750656 Msa0420300:CDS 50.0%
TGTCTGTGGCAAACAGTGGT+TGG + chr3_2:68750738-68750757 Msa0420300:intron 50.0%
! TAAAGCTGGCTCTTGAAGCC+GGG + chr3_2:68750766-68750785 Msa0420300:CDS 50.0%
CATAGGCACCACACTAGATG+CGG + chr3_2:68751232-68751251 Msa0420300:intron 50.0%
CACTATTGGGTCGGCATGTT+TGG + chr3_2:68751402-68751421 Msa0420300:intron 50.0%
! TGACATTTGAGGCAGGAAGG+AGG - chr3_2:68751526-68751545 None:intergenic 50.0%
AGGGGTTCAGCCATAAGTAG+TGG - chr3_2:68751994-68752013 None:intergenic 50.0%
TGGCTGAACCCCTGTTTACT+AGG + chr3_2:68752001-68752020 Msa0420300:intron 50.0%
TCAGCCACAAAGCTGGTACT+TGG + chr3_2:68752753-68752772 Msa0420300:three_prime_UTR 50.0%
CACACCAAGTACCAGCTTTG+TGG - chr3_2:68752760-68752779 None:intergenic 50.0%
! CACAAAGCTGGTACTTGGTG+TGG + chr3_2:68752758-68752777 Msa0420300:three_prime_UTR 50.0%
TGAGAGGTGGGAAGGGAAAG+GGG - chr3_2:68750577-68750596 None:intergenic 55.0%
! GCGTCTTTGAGAGGTGGGAA+GGG - chr3_2:68750584-68750603 None:intergenic 55.0%
! AGCGTCTTTGAGAGGTGGGA+AGG - chr3_2:68750585-68750604 None:intergenic 55.0%
! GGACCGGCTCTTGGTTCAAA+AGG + chr3_2:68750813-68750832 Msa0420300:CDS 55.0%
TGTCGTGTCCGCATCTAGTG+TGG - chr3_2:68751243-68751262 None:intergenic 55.0%
ACTAGATGCGGACACGACAC+CGG + chr3_2:68751244-68751263 Msa0420300:intron 55.0%
AGCAGGCACAGCGGCAAATA+TGG + chr3_2:68752506-68752525 Msa0420300:CDS 55.0%
GCAGGCACAGCGGCAAATAT+GGG + chr3_2:68752507-68752526 Msa0420300:CDS 55.0%
CGACGGAGTGCAGAAGAGAG+TGG - chr3_2:68750467-68750486 None:intergenic 60.0%
AGAGGTGGGAAGGGAAAGGG+GGG - chr3_2:68750575-68750594 None:intergenic 60.0%
GAGAGGTGGGAAGGGAAAGG+GGG - chr3_2:68750576-68750595 None:intergenic 60.0%
GCTTTGCCACCACCGGGTTT+GGG - chr3_2:68750631-68750650 None:intergenic 60.0%
TGCTTTGCCACCACCGGGTT+TGG - chr3_2:68750632-68750651 None:intergenic 60.0%
GAACCAAGAGCCGGTCCAAC+CGG - chr3_2:68750810-68750829 None:intergenic 60.0%
GCCATGGCTCCTCCCAAACC+CGG + chr3_2:68750616-68750635 Msa0420300:CDS 65.0%
ACCGGGTTTGGGAGGAGCCA+TGG - chr3_2:68750620-68750639 None:intergenic 65.0%
ATGGCTCCTCCCAAACCCGG+TGG + chr3_2:68750619-68750638 Msa0420300:CDS 65.0%
TTGCCACCACCGGGTTTGGG+AGG - chr3_2:68750628-68750647 None:intergenic 65.0%
! GCTGGCTCTTGAAGCCGGGA+AGG + chr3_2:68750770-68750789 Msa0420300:CDS 65.0%
TGAAGCCGGGAAGGCGACAC+CGG + chr3_2:68750779-68750798 Msa0420300:CDS 65.0%
GGGTCGGCATGTTTGGCCAG+CGG + chr3_2:68751409-68751428 Msa0420300:intron 65.0%
TCGTGGTGCGTAGTTGCCGC+TGG - chr3_2:68751428-68751447 None:intergenic 65.0%
GCTCCTCCCAAACCCGGTGG+TGG + chr3_2:68750622-68750641 Msa0420300:CDS 70.0%
!! TGGAGCCGGTGTCGCCTTCC+CGG - chr3_2:68750787-68750806 None:intergenic 70.0%
!! GAAGGCGACACCGGCTCCAC+CGG + chr3_2:68750788-68750807 Msa0420300:CDS 70.0%
! ACCGGCTCCACCGGTTGGAC+CGG + chr3_2:68750797-68750816 Msa0420300:CDS 70.0%
CCAAGAGCCGGTCCAACCGG+TGG - chr3_2:68750807-68750826 None:intergenic 70.0%
! CCACCGGTTGGACCGGCTCT+TGG + chr3_2:68750804-68750823 Msa0420300:CDS 70.0%
!! GCGACACCGGCTCCACCGGT+TGG + chr3_2:68750792-68750811 Msa0420300:CDS 75.0%
GCCGGTCCAACCGGTGGAGC+CGG - chr3_2:68750801-68750820 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 68750343 68752935 68750343 ID=Msa0420300;Name=Msa0420300
chr3_2 mRNA 68750343 68752935 68750343 ID=Msa0420300-mRNA-1;Parent=Msa0420300;Name=Msa0420300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=114|1|1|1|1|1|4|354|215
chr3_2 exon 68750343 68750658 68750343 ID=Msa0420300-mRNA-1:exon:16191;Parent=Msa0420300-mRNA-1
chr3_2 exon 68750754 68750926 68750754 ID=Msa0420300-mRNA-1:exon:16192;Parent=Msa0420300-mRNA-1
chr3_2 exon 68751019 68751082 68751019 ID=Msa0420300-mRNA-1:exon:16193;Parent=Msa0420300-mRNA-1
chr3_2 exon 68752373 68752935 68752373 ID=Msa0420300-mRNA-1:exon:16194;Parent=Msa0420300-mRNA-1
chr3_2 five_prime_UTR 68750343 68750456 68750343 ID=Msa0420300-mRNA-1:five_prime_utr;Parent=Msa0420300-mRNA-1
chr3_2 CDS 68750457 68750658 68750457 ID=Msa0420300-mRNA-1:cds;Parent=Msa0420300-mRNA-1
chr3_2 CDS 68750754 68750926 68750754 ID=Msa0420300-mRNA-1:cds;Parent=Msa0420300-mRNA-1
chr3_2 CDS 68751019 68751082 68751019 ID=Msa0420300-mRNA-1:cds;Parent=Msa0420300-mRNA-1
chr3_2 CDS 68752373 68752581 68752373 ID=Msa0420300-mRNA-1:cds;Parent=Msa0420300-mRNA-1
chr3_2 three_prime_UTR 68752582 68752935 68752582 ID=Msa0420300-mRNA-1:three_prime_utr;Parent=Msa0420300-mRNA-1
Gene Sequence

>Msa0420300

ATGGCGTCCACTCTCTTCTGCACTCCGTCGCTATGTTCTTCTTCCTCTTCTTCTATGTTTTCTACTTCTCTTAAATTATCCTTAAAACCCAGTGGCGTATCCCTTTTGAACAAAACCCCCCTTTCCCTTCCCACCTCTCAAAGACGCTTTAAAATCACTGCCATGGCTCCTCCCAAACCCGGTGGTGGCAAAGCAAAGAAAGTGGTTGGAATCATAAAGCTGGCTCTTGAAGCCGGGAAGGCGACACCGGCTCCACCGGTTGGACCGGCTCTTGGTTCAAAAGGTGTTAACATTATGGCTTTTTGTAAAGATTACAATGCTAGAACTGCTGATAAACCCGGTTATATCATTCCCGTTGAAATCACTGTCTTTGATGATAAAAGTTTTACTTTCATATTGAAGACTCCACCTGCTTCTGTTCTACTTCTTAAAGCTGCTGGGGTGGAAAAGGGTTCAAAAGACCCTAAGGCACAAAAAGTAGGAAAAGTCACAGTTGATCAATTGCGTACAATTGCTTCTGAGAAGTTGCCGGACTTAAATTGTGAGACCATCGAATCAGCTATGAGAATTATAGCAGGCACAGCGGCAAATATGGGAATTGATGTTGATCCTCCTATTCTTGAACCCAAGCAGAAGCAATTGTTGTAA

Protein sequence

>Msa0420300

MASTLFCTPSLCSSSSSSMFSTSLKLSLKPSGVSLLNKTPLSLPTSQRRFKITAMAPPKPGGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKAQKVGKVTVDQLRTIASEKLPDLNCETIESAMRIIAGTAANMGIDVDPPILEPKQKQLL*