AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373120 MtrunA17_Chr3g0122171 94.250 400 20 2 1 398 1 399 0.0 692
Msa0373120 MtrunA17_Chr2g0293821 25.431 232 147 5 51 282 127 332 3.11e-17 82.8
Msa0373120 MtrunA17_Chr8g0386481 22.703 370 197 10 101 397 534 887 3.86e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373120 AT3G23700.1 69.799 298 90 0 101 398 95 392 3.05e-147 423
Msa0373120 AT1G12800.1 28.175 252 161 7 154 397 527 766 1.50e-19 91.3
Msa0373120 AT5G30510.1 31.053 190 113 3 93 282 167 338 1.92e-19 90.1

Find 121 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGTTTGGATTGAATTT+TGG 0.165463 3_1:+72150674 None:intergenic
CAGCTTTCACATTTATTTAA+AGG 0.189630 3_1:-72145362 Msa0373120:three_prime_UTR
GGTAACTTGCGAGGGCATTT+AGG 0.208511 3_1:+72150478 None:intergenic
TCAACTCTCTTGCAAGTTCT+TGG 0.229040 3_1:+72149216 None:intergenic
TATTTAACTAACTCGCAAAA+AGG 0.301773 3_1:-72145296 Msa0373120:three_prime_UTR
AGAAGAAGAGGAAGAGGAAT+TGG 0.315706 3_1:+72150657 None:intergenic
TCTCACAAGACTTGCAGCTT+TGG 0.347827 3_1:-72145898 Msa0373120:CDS
CCACCGTCAACAACGCGAAT+TGG 0.350762 3_1:-72150634 Msa0373120:five_prime_UTR
CAGTCGCATCGATCCCTTAC+CGG 0.359860 3_1:-72147487 Msa0373120:CDS
GTAACTTGCGAGGGCATTTA+GGG 0.363821 3_1:+72150479 None:intergenic
ATGCTGGAGGCCTGCTGGTT+CGG 0.365464 3_1:-72149590 Msa0373120:CDS
AAGAGGAAGAGGAATTGGTT+TGG 0.384366 3_1:+72150662 None:intergenic
AACCGACTCTTGCTTCAAAA+AGG 0.402684 3_1:+72148717 None:intergenic
TATCTGAAAAGGAAGCTTCA+TGG 0.403011 3_1:-72148772 Msa0373120:CDS
GTCGGTTCTGTTGAGGACTA+TGG 0.403821 3_1:-72148701 Msa0373120:CDS
TAGTTAAATAAATCACGATT+TGG 0.407959 3_1:+72145309 None:intergenic
GCAGGTCTTTATCACCTTAC+CGG 0.410702 3_1:-72148565 Msa0373120:intron
ATGATGCTCTTCGTCAAGCC+AGG 0.415476 3_1:-72150321 Msa0373120:CDS
TGACCAGGAAGGCATCAAAA+AGG 0.417349 3_1:-72145465 Msa0373120:CDS
TAAAGTAAATTGTCAATAAA+CGG 0.417990 3_1:+72145257 None:intergenic
CATCGATCCCTTACCGGGGC+TGG 0.418626 3_1:-72147481 Msa0373120:CDS
TTCCGTTGTTGAACTCGAAA+TGG 0.425257 3_1:-72150611 Msa0373120:exon
CGGTGGAGAAGAAGAGGAAG+AGG 0.428260 3_1:+72150651 None:intergenic
GAAGAGCTATTGCAGGAAGA+TGG 0.434626 3_1:-72147447 Msa0373120:CDS
AGACGAGGAGAAACGGAAAT+TGG 0.435020 3_1:-72148798 Msa0373120:CDS
CGATGCAAGAATCAGTCGTC+AGG 0.443629 3_1:-72145939 Msa0373120:CDS
CGGGGCTCAGCTGTGAGAAC+GGG 0.451469 3_1:+72149544 None:intergenic
AGTAGTACTGCTGAAAGAAT+CGG 0.451994 3_1:+72147512 None:intergenic
CATTTACAATGGTAGGGTTG+AGG 0.458343 3_1:-72149619 Msa0373120:CDS
AGTCGCATCGATCCCTTACC+GGG 0.459967 3_1:-72147486 Msa0373120:CDS
ATTTACAATGGTAGGGTTGA+GGG 0.460450 3_1:-72149618 Msa0373120:CDS
TTTACTCTCCTTGCTCGAGC+TGG 0.461579 3_1:-72145765 Msa0373120:CDS
AAAGGCAATACAACGAGTAT+TGG 0.467765 3_1:-72145447 Msa0373120:CDS
TCTGCAACCCTAGGTTCCTT+CGG 0.469011 3_1:-72150580 Msa0373120:CDS
TTTGATGCCTTCCTGGTCAA+GGG 0.470271 3_1:+72145469 None:intergenic
AATACTTGAAGAGCTATTGC+AGG 0.471841 3_1:-72147454 Msa0373120:CDS
CGAAGAGCATCATGAGAGTC+GGG 0.473813 3_1:+72150331 None:intergenic
TATTCAAAACATATCAACAT+AGG 0.473981 3_1:-72148743 Msa0373120:CDS
TATTGTCTCCAGCCCCGGTA+AGG 0.478626 3_1:+72147473 None:intergenic
TGAAGTAGAGATCGTCAGAT+TGG 0.479506 3_1:-72149674 Msa0373120:intron
GTCATCCCAGGCACCTCCCA+TGG 0.479573 3_1:-72145796 Msa0373120:intron
TCATGAGAGTCGGGAGCAGA+AGG 0.482800 3_1:+72150340 None:intergenic
AAATACCTTCACTGATAAGA+TGG 0.485562 3_1:+72149187 None:intergenic
GAGCAAGGAGAGTAAACCTT+TGG 0.486180 3_1:+72145772 None:intergenic
ATTCAAAACATATCAACATA+GGG 0.487004 3_1:-72148742 Msa0373120:CDS
GAAATTGGTCTTATCTGAAA+AGG 0.487701 3_1:-72148783 Msa0373120:CDS
TCATCACAATTCTAAAATCA+TGG 0.491870 3_1:-72150428 Msa0373120:CDS
GTAGTACTGCTGAAAGAATC+GGG 0.493011 3_1:+72147513 None:intergenic
GAACCAATTCGCGTTGTTGA+CGG 0.499803 3_1:+72150631 None:intergenic
TTCTGAGATATGTATTAGTC+CGG 0.505166 3_1:+72148546 None:intergenic
GAGAGTAAACCTTTGGTCCA+TGG 0.508023 3_1:+72145779 None:intergenic
ATTGAAAGGATTGACGATTG+AGG 0.512516 3_1:+72150504 None:intergenic
AGAGTAAACCTTTGGTCCAT+GGG 0.520509 3_1:+72145780 None:intergenic
TTGTCCAGAGTTTCTAGCAG+TGG 0.520893 3_1:+72147969 None:intergenic
TTATAGTAGACGAGGAGAAA+CGG 0.524178 3_1:-72148805 Msa0373120:CDS
CCTTGCTCGAGCTGGAAGAC+AGG 0.524839 3_1:-72145757 Msa0373120:intron
TTGACGATTGAGGAAGAAGA+AGG 0.528513 3_1:+72150514 None:intergenic
TCAAGTATTGTCTCCAGCCC+CGG 0.530416 3_1:+72147468 None:intergenic
AAGAGCTATTGCAGGAAGAT+GGG 0.530885 3_1:-72147446 Msa0373120:intron
GTTCATCTGCGCTTCCCTGA+CGG 0.533095 3_1:-72148671 Msa0373120:intron
AGTGCAATCAATCAGATTCA+AGG 0.536497 3_1:+72145416 None:intergenic
AGATCCACTGCTAGAAACTC+TGG 0.537122 3_1:-72147973 Msa0373120:CDS
GTAAGAGACTTCTTAAGAGA+AGG 0.538732 3_1:-72148499 Msa0373120:CDS
GTGGACTCATTTACAATGGT+AGG 0.540686 3_1:-72149626 Msa0373120:CDS
GCTATCTTCTCTGCAACCCT+AGG 0.540971 3_1:-72150589 Msa0373120:CDS
ACGGGGCTCAGCTGTGAGAA+CGG 0.547720 3_1:+72149543 None:intergenic
TGAAGCGATAGATAGAATAG+AGG 0.550543 3_1:+72150706 None:intergenic
GTAGAGATCGTCAGATTGGA+AGG 0.553487 3_1:-72149670 Msa0373120:intron
ACGAAGAGCATCATGAGAGT+CGG 0.553818 3_1:+72150330 None:intergenic
AGCAAGAGTCGGTTCTGTTG+AGG 0.555824 3_1:-72148708 Msa0373120:CDS
ACATGGCACCGAAGGAACCT+AGG 0.560207 3_1:+72150572 None:intergenic
ATACCTTGACATGAATGCAC+GGG 0.560834 3_1:+72149525 None:intergenic
TACATATCTCAGAAGTGTCG+TGG 0.561533 3_1:-72148537 Msa0373120:CDS
TCTTGTGATTATTATTGAGA+GGG 0.562540 3_1:+72145392 None:intergenic
CAAGGTGGTGGTAACTTGCG+AGG 0.565879 3_1:+72150469 None:intergenic
TAAGAGAAGGTGAAGAAGTG+AGG 0.569636 3_1:-72148486 Msa0373120:CDS
AAGAGAAGGTGAAGAAGTGA+GGG 0.569971 3_1:-72148485 Msa0373120:CDS
ATTGTCTCCAGCCCCGGTAA+GGG 0.572119 3_1:+72147474 None:intergenic
TGGACTCATTTACAATGGTA+GGG 0.572453 3_1:-72149625 Msa0373120:CDS
AGATATGTATTAGTCCGGTA+AGG 0.575895 3_1:+72148551 None:intergenic
GGGCATTTAGGGAAATTGAA+AGG 0.576571 3_1:+72150490 None:intergenic
ATCTTGTGATTATTATTGAG+AGG 0.577327 3_1:+72145391 None:intergenic
TAGAGTAAAACCGAACCAGC+AGG 0.577882 3_1:+72149580 None:intergenic
CCTGTCTTCCAGCTCGAGCA+AGG 0.580250 3_1:+72145757 None:intergenic
TAGTGCCACTGGCAAGGTGG+TGG 0.581006 3_1:+72150457 None:intergenic
CGGTTCCATCTTATCAGTGA+AGG 0.581265 3_1:-72149192 Msa0373120:intron
AGGCACCTCCCATGGACCAA+AGG 0.593592 3_1:-72145788 Msa0373120:CDS
TGTTGACGGTGGAGAAGAAG+AGG 0.594518 3_1:+72150645 None:intergenic
TCTGGACAAAGTAATACCTC+AGG 0.594718 3_1:-72147955 Msa0373120:intron
GAGGAAGGACATGGCACCGA+AGG 0.595181 3_1:+72150564 None:intergenic
TGATGCTCTTCGTCAAGCCA+GGG 0.599111 3_1:-72150320 Msa0373120:intron
TGATTGTGAAGATGAGAGGA+AGG 0.601524 3_1:+72150549 None:intergenic
GTTGTGATTGTGAAGATGAG+AGG 0.605556 3_1:+72150545 None:intergenic
AGCCCCGTGCATTCATGTCA+AGG 0.606788 3_1:-72149528 Msa0373120:intron
ACATATCTCAGAAGTGTCGT+GGG 0.608336 3_1:-72148536 Msa0373120:CDS
TCTGAAAACATCCCTTGACC+AGG 0.610102 3_1:-72145480 Msa0373120:CDS
CATGGCACCGAAGGAACCTA+GGG 0.612699 3_1:+72150573 None:intergenic
GATGCAAGAATCAGTCGTCA+GGG 0.617292 3_1:-72145938 Msa0373120:CDS
CCAATTCGCGTTGTTGACGG+TGG 0.619513 3_1:+72150634 None:intergenic
GAACTTGCAAGAGAGTTGAT+CGG 0.625345 3_1:-72149212 Msa0373120:CDS
TGACGATTGAGGAAGAAGAA+GGG 0.626651 3_1:+72150515 None:intergenic
TTGCATAGTAGTTACCGTCA+GGG 0.635380 3_1:+72148657 None:intergenic
GATACCTTGACATGAATGCA+CGG 0.637484 3_1:+72149524 None:intergenic
AAAACATCCCTTGACCAGGA+AGG 0.640351 3_1:-72145476 Msa0373120:CDS
CATGAGAGTCGGGAGCAGAA+GGG 0.642717 3_1:+72150341 None:intergenic
GATGATGACGATAGTGCCAC+TGG 0.643763 3_1:+72150446 None:intergenic
AAGGTGGTGGTAACTTGCGA+GGG 0.646784 3_1:+72150470 None:intergenic
GACAGTGGACTCATTTACAA+TGG 0.649720 3_1:-72149630 Msa0373120:CDS
AGCCATTTCGAGTTCAACAA+CGG 0.657550 3_1:+72150609 None:intergenic
TGAAGATGAGAGGAAGGACA+TGG 0.660623 3_1:+72150555 None:intergenic
TTCAAAACATATCAACATAG+GGG 0.663132 3_1:-72148741 Msa0373120:CDS
AGTTACCACCACCTTGCCAG+TGG 0.668620 3_1:-72150462 Msa0373120:CDS
TGACGATAGTGCCACTGGCA+AGG 0.670149 3_1:+72150451 None:intergenic
GTAAACCTTTGGTCCATGGG+AGG 0.670349 3_1:+72145783 None:intergenic
ATGCAAGAATCAGTCGTCAG+GGG 0.684889 3_1:-72145937 Msa0373120:CDS
CATATTGATGAATTCGACAG+TGG 0.686608 3_1:-72150376 Msa0373120:CDS
GCAAACGCATATAGAGACAG+TGG 0.691753 3_1:-72149645 Msa0373120:CDS
TTAGGTAATTATAGTAGACG+AGG 0.708605 3_1:-72148813 Msa0373120:intron
TACCTTGACATGAATGCACG+GGG 0.710872 3_1:+72149526 None:intergenic
GTCGCATCGATCCCTTACCG+GGG 0.720668 3_1:-72147485 Msa0373120:CDS
CGATAGTGCCACTGGCAAGG+TGG 0.751025 3_1:+72150454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTAAAAAAAAAAA+TGG - chr3_1:72150072-72150091 Msa0373120:intron 0.0%
!! TAATTACTATAAAAGAAATT+GGG + chr3_1:72147614-72147633 None:intergenic 10.0%
!! TTAATTACTATAAAAGAAAT+TGG + chr3_1:72147615-72147634 None:intergenic 10.0%
!!! TATAATTTATAAGCATATTT+TGG + chr3_1:72148206-72148225 None:intergenic 10.0%
!! TATGCTTATAAATTATAATT+AGG - chr3_1:72148209-72148228 Msa0373120:intron 10.0%
!! ATGCTTATAAATTATAATTA+GGG - chr3_1:72148210-72148229 Msa0373120:intron 10.0%
!! TAATATATTATTACAAAGAA+AGG - chr3_1:72148600-72148619 Msa0373120:intron 10.0%
!!! CAGCTTATATTTAAAATTTA+TGG - chr3_1:72145780-72145799 Msa0373120:CDS 15.0%
!!! TTATTTTCTCAAATTATTAG+CGG + chr3_1:72145943-72145962 None:intergenic 15.0%
!! TTCAATTTAATCATAATAGT+AGG - chr3_1:72146612-72146631 Msa0373120:intron 15.0%
!! TGTCTTAAATTTATAAATGA+CGG - chr3_1:72147065-72147084 Msa0373120:intron 15.0%
!!! ATAGTAATTAACTATGTTTT+TGG - chr3_1:72147624-72147643 Msa0373120:intron 15.0%
!! TGCATATATAAATACTAAAT+AGG + chr3_1:72148243-72148262 None:intergenic 15.0%
!! TATTTATATATGCATGAATA+TGG - chr3_1:72148249-72148268 Msa0373120:intron 15.0%
!! ATTTATATATGCATGAATAT+GGG - chr3_1:72148250-72148269 Msa0373120:intron 15.0%
!! TGAAATCCATAATAATATAA+TGG - chr3_1:72149647-72149666 Msa0373120:CDS 15.0%
!! GAAATCCATAATAATATAAT+GGG - chr3_1:72149648-72149667 Msa0373120:CDS 15.0%
!! AAATCCATAATAATATAATG+GGG - chr3_1:72149649-72149668 Msa0373120:CDS 15.0%
!! TCATATATACATTATATTAG+GGG + chr3_1:72149927-72149946 None:intergenic 15.0%
!! GTCATATATACATTATATTA+GGG + chr3_1:72149928-72149947 None:intergenic 15.0%
!! TGTCATATATACATTATATT+AGG + chr3_1:72149929-72149948 None:intergenic 15.0%
!!! AATATATTTCTAATTTGTTG+AGG - chr3_1:72150367-72150386 Msa0373120:CDS 15.0%
!! TAAAGTAAATTGTCAATAAA+CGG + chr3_1:72150662-72150681 None:intergenic 15.0%
!! AAGTAAGTTTCTTTGTATTT+AGG - chr3_1:72145704-72145723 Msa0373120:intron 20.0%
!! AGTAAGTTTCTTTGTATTTA+GGG - chr3_1:72145705-72145724 Msa0373120:intron 20.0%
!!! TAGGTTTTTATATTAGATGT+AGG + chr3_1:72145823-72145842 None:intergenic 20.0%
!! AGTGTAGTGAAATTAATATT+AGG + chr3_1:72145842-72145861 None:intergenic 20.0%
!! AAAACTAATGTATATTCTTG+CGG - chr3_1:72146870-72146889 Msa0373120:intron 20.0%
!! TATTCAAAACATATCAACAT+AGG - chr3_1:72147173-72147192 Msa0373120:intron 20.0%
!! ATTCAAAACATATCAACATA+GGG - chr3_1:72147174-72147193 Msa0373120:intron 20.0%
!! TAATAGACTATTACTTTAGA+AGG + chr3_1:72147500-72147519 None:intergenic 20.0%
!! TTTCTATTATAAATGTTTGC+TGG - chr3_1:72147548-72147567 Msa0373120:intron 20.0%
!!! AACTTTTCTTTACAATAATG+AGG - chr3_1:72147748-72147767 Msa0373120:intron 20.0%
!! AGTAATTATCATACACAAAA+GGG + chr3_1:72148025-72148044 None:intergenic 20.0%
!! TAGTAATTATCATACACAAA+AGG + chr3_1:72148026-72148045 None:intergenic 20.0%
!! TTAAATACATTTATACACCA+AGG + chr3_1:72148055-72148074 None:intergenic 20.0%
!! AAATTAGGTATATGAATCAA+AGG - chr3_1:72148831-72148850 Msa0373120:intron 20.0%
!! AGATAGAACTAGAATTAAAA+GGG - chr3_1:72149002-72149021 Msa0373120:intron 20.0%
!! TTTAGAGATGATTTATGATA+AGG - chr3_1:72149030-72149049 Msa0373120:intron 20.0%
!! AATCCATAATAATATAATGG+GGG - chr3_1:72149650-72149669 Msa0373120:CDS 20.0%
!!! TTTTGATATCTGAATCTTTT+TGG - chr3_1:72150098-72150117 Msa0373120:intron 20.0%
!! TAGTTAAATAAATCACGATT+TGG + chr3_1:72150610-72150629 None:intergenic 20.0%
!!! AATTGGTTTGGATTGAATTT+TGG + chr3_1:72145245-72145264 None:intergenic 25.0%
!!! TCATCACAATTCTAAAATCA+TGG - chr3_1:72145488-72145507 Msa0373120:CDS 25.0%
! TTTCTTAATCCTATCAACTT+AGG - chr3_1:72145650-72145669 Msa0373120:intron 25.0%
!!! TAATATTCTCCTAAGTTGAT+AGG + chr3_1:72145662-72145681 None:intergenic 25.0%
! AGATGTAGGTTATATAGTTA+AGG + chr3_1:72145809-72145828 None:intergenic 25.0%
! TTACAATAAACTACCAATGT+CGG + chr3_1:72146100-72146119 None:intergenic 25.0%
!!! TCCTTACAATTCTAAAATCA+TGG - chr3_1:72146440-72146459 Msa0373120:intron 25.0%
!!! ACCATGATTTTAGAATTGTA+AGG + chr3_1:72146444-72146463 None:intergenic 25.0%
! CACACAATTAAATGACTAAA+TGG + chr3_1:72146569-72146588 None:intergenic 25.0%
! CATTTAGTCATTTAATTGTG+TGG - chr3_1:72146567-72146586 Msa0373120:intron 25.0%
! TTGAAATGACTCAAATCATA+TGG + chr3_1:72146904-72146923 None:intergenic 25.0%
! TAAGAGTTTGATAGATTTCA+AGG + chr3_1:72146939-72146958 None:intergenic 25.0%
! TTCAAAACATATCAACATAG+GGG - chr3_1:72147175-72147194 Msa0373120:intron 25.0%
! ATGCAAACTTTGTATGTTTA+TGG - chr3_1:72147276-72147295 Msa0373120:intron 25.0%
! TTTCCATGATAAAGTGAAAA+AGG + chr3_1:72147305-72147324 None:intergenic 25.0%
!! ACTTTAGAAGGCATAAATAT+TGG + chr3_1:72147488-72147507 None:intergenic 25.0%
! AAAATTCATTCACATGTCTT+GGG + chr3_1:72147836-72147855 None:intergenic 25.0%
! TAAAATTCATTCACATGTCT+TGG + chr3_1:72147837-72147856 None:intergenic 25.0%
!! TTTTACACTGCAAGATTAAA+TGG + chr3_1:72147888-72147907 None:intergenic 25.0%
!! ATTTAGTTTATACAAACCTG+AGG + chr3_1:72147980-72147999 None:intergenic 25.0%
! GATAATTACTATGTTATCCT+TGG - chr3_1:72148035-72148054 Msa0373120:intron 25.0%
! TAAATACTTCAAACAGTGAT+AGG + chr3_1:72148502-72148521 None:intergenic 25.0%
!! GTTTGAAGTATTTAACTACT+TGG - chr3_1:72148508-72148527 Msa0373120:CDS 25.0%
! AAGAAATATTGAAACCGTAT+GGG + chr3_1:72148568-72148587 None:intergenic 25.0%
! AAAGAAATATTGAAACCGTA+TGG + chr3_1:72148569-72148588 None:intergenic 25.0%
! ATAGATAGTAATAATGCCTA+AGG - chr3_1:72148623-72148642 Msa0373120:intron 25.0%
! GCATACAAGATAATGAAATT+AGG - chr3_1:72148816-72148835 Msa0373120:intron 25.0%
! ATATGAATCAAAGGAAAATC+AGG - chr3_1:72148840-72148859 Msa0373120:intron 25.0%
! TATGAATCAAAGGAAAATCA+GGG - chr3_1:72148841-72148860 Msa0373120:intron 25.0%
! AGGACTAAATTATGAAAAGA+TGG - chr3_1:72148865-72148884 Msa0373120:intron 25.0%
! ACTAAATTATGAAAAGATGG+TGG - chr3_1:72148868-72148887 Msa0373120:intron 25.0%
! GAGATAGAACTAGAATTAAA+AGG - chr3_1:72149001-72149020 Msa0373120:intron 25.0%
! GATAGAACTAGAATTAAAAG+GGG - chr3_1:72149003-72149022 Msa0373120:intron 25.0%
! TCTCATTTACAATTATAGCA+TGG + chr3_1:72149237-72149256 None:intergenic 25.0%
! CAACAAAACTACATATTGTT+GGG + chr3_1:72149337-72149356 None:intergenic 25.0%
! TCAACAAAACTACATATTGT+TGG + chr3_1:72149338-72149357 None:intergenic 25.0%
!!! TCACTAGTTTTGTAAGTAAA+AGG + chr3_1:72149404-72149423 None:intergenic 25.0%
! TGTAATAAGGAAAACAAAGA+AGG + chr3_1:72149479-72149498 None:intergenic 25.0%
! CAAGAATAACAAAATTTCTG+TGG + chr3_1:72149574-72149593 None:intergenic 25.0%
! ATTCCCCCATTATATTATTA+TGG + chr3_1:72149656-72149675 None:intergenic 25.0%
! TCTCTTTATAAACACAACTA+GGG + chr3_1:72150306-72150325 None:intergenic 25.0%
! ATCTCTTTATAAACACAACT+AGG + chr3_1:72150307-72150326 None:intergenic 25.0%
! TCTTGTGATTATTATTGAGA+GGG + chr3_1:72150527-72150546 None:intergenic 25.0%
! ATCTTGTGATTATTATTGAG+AGG + chr3_1:72150528-72150547 None:intergenic 25.0%
! CAGCTTTCACATTTATTTAA+AGG - chr3_1:72150554-72150573 Msa0373120:CDS 25.0%
! TATTTAACTAACTCGCAAAA+AGG - chr3_1:72150620-72150639 Msa0373120:five_prime_UTR 25.0%
TTATGTGTTGTATTTGCCAA+CGG - chr3_1:72145868-72145887 Msa0373120:intron 30.0%
TGTAATAATATGTGTCGTCT+CGG - chr3_1:72145973-72145992 Msa0373120:intron 30.0%
! TAGAACACAACACATTTTAG+AGG + chr3_1:72146205-72146224 None:intergenic 30.0%
AATTTGCAATAAGTCAGTAG+TGG + chr3_1:72146646-72146665 None:intergenic 30.0%
!!! AGTTCTTGGATAGTTTTATC+TGG + chr3_1:72146689-72146708 None:intergenic 30.0%
AAATACCTTCACTGATAAGA+TGG + chr3_1:72146732-72146751 None:intergenic 30.0%
! TCACAGGAAAAAAAGGTATA+TGG + chr3_1:72146769-72146788 None:intergenic 30.0%
ACCTAATTCAGCATAAACAA+CGG + chr3_1:72147005-72147024 None:intergenic 30.0%
TTAGGTAATTATAGTAGACG+AGG - chr3_1:72147103-72147122 Msa0373120:intron 30.0%
!! GAAATTGGTCTTATCTGAAA+AGG - chr3_1:72147133-72147152 Msa0373120:intron 30.0%
!! CATCCTTTTTCACTTTATCA+TGG - chr3_1:72147299-72147318 Msa0373120:intron 30.0%
!! TTCTGAGATATGTATTAGTC+CGG + chr3_1:72147373-72147392 None:intergenic 30.0%
!! GTTTTAGTATCATTGCTTGT+TGG - chr3_1:72147585-72147604 Msa0373120:intron 30.0%
AAAAAAGTCAACATGCATGT+TGG + chr3_1:72147863-72147882 None:intergenic 30.0%
AATCTTGCAGTGTAAAAATG+AGG - chr3_1:72147891-72147910 Msa0373120:intron 30.0%
ATTATCATACACAAAAGGGA+CGG + chr3_1:72148021-72148040 None:intergenic 30.0%
ACACCTACTAATTTGAAAGA+GGG - chr3_1:72148155-72148174 Msa0373120:intron 30.0%
! ATGGATGTATCTCTGATTTT+GGG + chr3_1:72148538-72148557 None:intergenic 30.0%
AGAAATATTGAAACCGTATG+GGG + chr3_1:72148567-72148586 None:intergenic 30.0%
!! TTTCGTTTTTCTGTATTGGA+GGG + chr3_1:72148657-72148676 None:intergenic 30.0%
!! TTTACATTTTTGAGCCACTT+TGG + chr3_1:72148687-72148706 None:intergenic 30.0%
!!! GGTGTGGTTTCTTTTTTATT+AGG + chr3_1:72148743-72148762 None:intergenic 30.0%
! ATGTCTTGTGAAAGTGTAAT+GGG + chr3_1:72148770-72148789 None:intergenic 30.0%
ATGAATCAAAGGAAAATCAG+GGG - chr3_1:72148842-72148861 Msa0373120:intron 30.0%
ATCAGTAAGTCAGAGTTAAA+AGG - chr3_1:72148948-72148967 Msa0373120:intron 30.0%
!! TCATTTGATTACCGTTTTTC+TGG - chr3_1:72149065-72149084 Msa0373120:intron 30.0%
TAACTCATCATTACACTCAT+TGG - chr3_1:72149268-72149287 Msa0373120:intron 30.0%
AATAAGGAAAACAAAGAAGG+TGG + chr3_1:72149476-72149495 None:intergenic 30.0%
TCAACTCGTACATTGTAATA+AGG + chr3_1:72149492-72149511 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr3_1:72149853-72149872 Msa0373120:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr3_1:72149854-72149873 Msa0373120:intron 30.0%
TGAAGCGATAGATAGAATAG+AGG + chr3_1:72145213-72145232 None:intergenic 35.0%
ATTGAAAGGATTGACGATTG+AGG + chr3_1:72145415-72145434 None:intergenic 35.0%
CATATTGATGAATTCGACAG+TGG - chr3_1:72145540-72145559 Msa0373120:intron 35.0%
AATTGAAGAAATACAGACCC+TGG + chr3_1:72145616-72145635 None:intergenic 35.0%
TATGTGTTGTATTTGCCAAC+GGG - chr3_1:72145869-72145888 Msa0373120:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG + chr3_1:72145937-72145956 None:intergenic 35.0%
! GCAAAAATGGTTGACCTTTT+TGG - chr3_1:72146059-72146078 Msa0373120:intron 35.0%
!!! TGACCTTTTTGGTTCTTGTT+TGG - chr3_1:72146070-72146089 Msa0373120:intron 35.0%
GTTCCAAACAAGAACCAAAA+AGG + chr3_1:72146076-72146095 None:intergenic 35.0%
ACATTGCTTGTGATTCTCTT+TGG - chr3_1:72146130-72146149 Msa0373120:intron 35.0%
TGGACTCATTTACAATGGTA+GGG - chr3_1:72146291-72146310 Msa0373120:intron 35.0%
ATTTACAATGGTAGGGTTGA+GGG - chr3_1:72146298-72146317 Msa0373120:intron 35.0%
! GTTCGGTTTTACTCTATCAT+GGG - chr3_1:72146343-72146362 Msa0373120:intron 35.0%
AAGCACTACTACTACTACTA+TGG + chr3_1:72146421-72146440 None:intergenic 35.0%
ACTACTACTACTAGATACCA+TGG + chr3_1:72145508-72145527 None:intergenic 35.0%
TGAGGATGAATTGTGATGTA+AGG + chr3_1:72146537-72146556 None:intergenic 35.0%
!! TATCTGGTTCTGAACAGAAA+AGG + chr3_1:72146673-72146692 None:intergenic 35.0%
GTTGGATTCACAGGAAAAAA+AGG + chr3_1:72146776-72146795 None:intergenic 35.0%
AAATAGAGAAGCCGCAAATA+GGG + chr3_1:72146798-72146817 None:intergenic 35.0%
TAAATAGAGAAGCCGCAAAT+AGG + chr3_1:72146799-72146818 None:intergenic 35.0%
TTATGGTACCAAAATGATGC+AGG + chr3_1:72146981-72147000 None:intergenic 35.0%
!! TCAGCATAAACAACGGATTA+TGG + chr3_1:72146998-72147017 None:intergenic 35.0%
TCCGTTGTTTATGCTGAATT+AGG - chr3_1:72147001-72147020 Msa0373120:intron 35.0%
! ATATTTTCAACCTGCATGCT+AGG - chr3_1:72147029-72147048 Msa0373120:intron 35.0%
! ATTTGTTAAACCTAGCATGC+AGG + chr3_1:72147042-72147061 None:intergenic 35.0%
TGCATGCTAGGTTTAACAAA+TGG - chr3_1:72147041-72147060 Msa0373120:intron 35.0%
TTATAGTAGACGAGGAGAAA+CGG - chr3_1:72147111-72147130 Msa0373120:intron 35.0%
TATCTGAAAAGGAAGCTTCA+TGG - chr3_1:72147144-72147163 Msa0373120:intron 35.0%
AGATATGTATTAGTCCGGTA+AGG + chr3_1:72147368-72147387 None:intergenic 35.0%
GTAAGAGACTTCTTAAGAGA+AGG - chr3_1:72147417-72147436 Msa0373120:intron 35.0%
CACACCTACTAATTTGAAAG+AGG - chr3_1:72148154-72148173 Msa0373120:intron 35.0%
AAGCCCTCTTTCAAATTAGT+AGG + chr3_1:72148161-72148180 None:intergenic 35.0%
TTGAAAGAGGGCTTGTATTT+AGG - chr3_1:72148167-72148186 Msa0373120:intron 35.0%
TGAAAGAGGGCTTGTATTTA+GGG - chr3_1:72148168-72148187 Msa0373120:intron 35.0%
AGTAGTACTGCTGAAAGAAT+CGG + chr3_1:72148407-72148426 None:intergenic 35.0%
AATACTTGAAGAGCTATTGC+AGG - chr3_1:72148462-72148481 Msa0373120:intron 35.0%
! GATGGATGTATCTCTGATTT+TGG + chr3_1:72148539-72148558 None:intergenic 35.0%
!! CTTTCGTTTTTCTGTATTGG+AGG + chr3_1:72148658-72148677 None:intergenic 35.0%
!! CTGCTTTCGTTTTTCTGTAT+TGG + chr3_1:72148661-72148680 None:intergenic 35.0%
CAAAAATGTAAACAGCTGCT+TGG - chr3_1:72148695-72148714 Msa0373120:CDS 35.0%
! TGTGAAAGTGTAATGGGATA+AGG + chr3_1:72148764-72148783 None:intergenic 35.0%
! GATGTCTTGTGAAAGTGTAA+TGG + chr3_1:72148771-72148790 None:intergenic 35.0%
!! ATGAAAAGATGGTGGAATCT+CGG - chr3_1:72148876-72148895 Msa0373120:intron 35.0%
TACTGATCTGTTCTCTTTAC+TGG + chr3_1:72148935-72148954 None:intergenic 35.0%
TCAAGCAGTTTCCAGAAAAA+CGG + chr3_1:72149079-72149098 None:intergenic 35.0%
TACATAACTCCTGTTACTGT+TGG - chr3_1:72149104-72149123 Msa0373120:intron 35.0%
AGAAATCTTCCAACAGTAAC+AGG + chr3_1:72149116-72149135 None:intergenic 35.0%
!! TGTTGATAATTGCTGCTCTT+TGG - chr3_1:72149352-72149371 Msa0373120:intron 35.0%
TTGCAATTTCTCTGCATTCA+AGG + chr3_1:72149692-72149711 None:intergenic 35.0%
ACCAACAAAGTCTACATTCA+GGG + chr3_1:72149721-72149740 None:intergenic 35.0%
AGACTTTGTTGGTCAATTTC+AGG - chr3_1:72149728-72149747 Msa0373120:intron 35.0%
GACTTTGTTGGTCAATTTCA+GGG - chr3_1:72149729-72149748 Msa0373120:intron 35.0%
TCAGGGACTAAATTGACTAA+AGG - chr3_1:72149778-72149797 Msa0373120:intron 35.0%
ACTAAAAGAGTCTGCATTCA+GGG - chr3_1:72149825-72149844 Msa0373120:intron 35.0%
AAAGGCAATACAACGAGTAT+TGG - chr3_1:72150469-72150488 Msa0373120:CDS 35.0%
AGTGCAATCAATCAGATTCA+AGG + chr3_1:72150503-72150522 None:intergenic 35.0%
AAGAGGAAGAGGAATTGGTT+TGG + chr3_1:72145257-72145276 None:intergenic 40.0%
AGAAGAAGAGGAAGAGGAAT+TGG + chr3_1:72145262-72145281 None:intergenic 40.0%
TTCCGTTGTTGAACTCGAAA+TGG - chr3_1:72145305-72145324 Msa0373120:three_prime_UTR 40.0%
!! AGCCATTTCGAGTTCAACAA+CGG + chr3_1:72145310-72145329 None:intergenic 40.0%
TGATTGTGAAGATGAGAGGA+AGG + chr3_1:72145370-72145389 None:intergenic 40.0%
GTTGTGATTGTGAAGATGAG+AGG + chr3_1:72145374-72145393 None:intergenic 40.0%
TGACGATTGAGGAAGAAGAA+GGG + chr3_1:72145404-72145423 None:intergenic 40.0%
TTGACGATTGAGGAAGAAGA+AGG + chr3_1:72145405-72145424 None:intergenic 40.0%
GGGCATTTAGGGAAATTGAA+AGG + chr3_1:72145429-72145448 None:intergenic 40.0%
GGGATTAAGCAACACAAATG+TGG - chr3_1:72145725-72145744 Msa0373120:intron 40.0%
ATGTGTTGTATTTGCCAACG+GGG - chr3_1:72145870-72145889 Msa0373120:intron 40.0%
! TTTTGCCAACCTATGAAGCA+CGG + chr3_1:72146045-72146064 None:intergenic 40.0%
! GCTTCATAGGTTGGCAAAAA+TGG - chr3_1:72146046-72146065 Msa0373120:intron 40.0%
AATCACAAGCAATGTCAGCA+AGG + chr3_1:72146125-72146144 None:intergenic 40.0%
TGAAGTAGAGATCGTCAGAT+TGG - chr3_1:72146242-72146261 Msa0373120:intron 40.0%
! GACAGTGGACTCATTTACAA+TGG - chr3_1:72146286-72146305 Msa0373120:intron 40.0%
GTGGACTCATTTACAATGGT+AGG - chr3_1:72146290-72146309 Msa0373120:intron 40.0%
CATTTACAATGGTAGGGTTG+AGG - chr3_1:72146297-72146316 Msa0373120:intron 40.0%
!! GGTTCGGTTTTACTCTATCA+TGG - chr3_1:72146342-72146361 Msa0373120:intron 40.0%
ATACCTTGACATGAATGCAC+GGG + chr3_1:72146394-72146413 None:intergenic 40.0%
GATACCTTGACATGAATGCA+CGG + chr3_1:72146395-72146414 None:intergenic 40.0%
TCCTTAATGCTTTGACACCA+TGG - chr3_1:72146486-72146505 Msa0373120:intron 40.0%
! ACCATGGTGTCAAAGCATTA+AGG + chr3_1:72146490-72146509 None:intergenic 40.0%
!! ACTAAATGGCATCGATAGTG+AGG + chr3_1:72146555-72146574 None:intergenic 40.0%
TCAACTCTCTTGCAAGTTCT+TGG + chr3_1:72146703-72146722 None:intergenic 40.0%
! GAACTTGCAAGAGAGTTGAT+CGG - chr3_1:72146704-72146723 Msa0373120:intron 40.0%
TGTGAATCCAACCCTATTTG+CGG - chr3_1:72146784-72146803 Msa0373120:intron 40.0%
TATTAGTCCAGCTGAAGCTT+CGG - chr3_1:72146817-72146836 Msa0373120:intron 40.0%
! TAGTGCTTCCTGCATCATTT+TGG - chr3_1:72146970-72146989 Msa0373120:intron 40.0%
!!! CGGCACTTTCTTTTGACTTT+AGG - chr3_1:72147085-72147104 Msa0373120:intron 40.0%
!!! GACCTTTTTGAAGCAAGAGT+CGG - chr3_1:72147197-72147216 Msa0373120:intron 40.0%
! AACCGACTCTTGCTTCAAAA+AGG + chr3_1:72147202-72147221 None:intergenic 40.0%
TTGCATAGTAGTTACCGTCA+GGG + chr3_1:72147262-72147281 None:intergenic 40.0%
TTTGCATAGTAGTTACCGTC+AGG + chr3_1:72147263-72147282 None:intergenic 40.0%
!! TACATATCTCAGAAGTGTCG+TGG - chr3_1:72147379-72147398 Msa0373120:intron 40.0%
!! ACATATCTCAGAAGTGTCGT+GGG - chr3_1:72147380-72147399 Msa0373120:intron 40.0%
TAAGAGAAGGTGAAGAAGTG+AGG - chr3_1:72147430-72147449 Msa0373120:intron 40.0%
AAGAGAAGGTGAAGAAGTGA+GGG - chr3_1:72147431-72147450 Msa0373120:intron 40.0%
! TTCTGTCTTGAACCGACTTT+CGG - chr3_1:72147674-72147693 Msa0373120:intron 40.0%
ACAGCTTAGAAACCGAAAGT+CGG + chr3_1:72147689-72147708 None:intergenic 40.0%
TCTTGGGAGAGTTTATGACA+TGG + chr3_1:72147820-72147839 None:intergenic 40.0%
TCTGGACAAAGTAATACCTC+AGG - chr3_1:72147961-72147980 Msa0373120:CDS 40.0%
TACACGTCTGTGTGAATATG+CGG - chr3_1:72148281-72148300 Msa0373120:intron 40.0%
TCACGCTCATACACACATTT+AGG + chr3_1:72148318-72148337 None:intergenic 40.0%
! AACTCCGAGTTTCATTTTGC+AGG - chr3_1:72148366-72148385 Msa0373120:intron 40.0%
CCATCCTGCAAAATGAAACT+CGG + chr3_1:72148373-72148392 None:intergenic 40.0%
GTAGTACTGCTGAAAGAATC+GGG + chr3_1:72148406-72148425 None:intergenic 40.0%
AAGAGCTATTGCAGGAAGAT+GGG - chr3_1:72148470-72148489 Msa0373120:CDS 40.0%
TTGGAGGGTTTCTTATCCTT+AGG + chr3_1:72148642-72148661 None:intergenic 40.0%
! AAGTGTAATGGGATAAGGTG+TGG + chr3_1:72148759-72148778 None:intergenic 40.0%
AATCAAAGGAAAATCAGGGG+AGG - chr3_1:72148845-72148864 Msa0373120:intron 40.0%
TCTCGTTATCCTACAAGCTA+AGG - chr3_1:72149133-72149152 Msa0373120:intron 40.0%
TATCCTACAAGCTAAGGAGA+TGG - chr3_1:72149139-72149158 Msa0373120:intron 40.0%
GTTGGGTGATTCAGACAATT+CGG + chr3_1:72149320-72149339 None:intergenic 40.0%
GTAAGTAAAAGGATCAGAGC+AGG + chr3_1:72149393-72149412 None:intergenic 40.0%
TCCCTGAATGTAGACTTTGT+TGG - chr3_1:72149717-72149736 Msa0373120:intron 40.0%
GACCAACAAAGTCTACATTC+AGG + chr3_1:72149722-72149741 None:intergenic 40.0%
TCAGGGACTAAAGTGACTAA+CGG - chr3_1:72149746-72149765 Msa0373120:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG - chr3_1:72149761-72149780 Msa0373120:intron 40.0%
! ACTAAAGGAGTGTGCATTCA+TGG - chr3_1:72149793-72149812 Msa0373120:intron 40.0%
GACTAAAAGAGTCTGCATTC+AGG - chr3_1:72149824-72149843 Msa0373120:intron 40.0%
CTTTAGTCCCTGAATAGGAA+AGG + chr3_1:72149895-72149914 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG + chr3_1:72149900-72149919 None:intergenic 40.0%
!! TGAATCTTTTTGGTCATCCC+AGG - chr3_1:72150108-72150127 Msa0373120:intron 40.0%
AGAGTAAACCTTTGGTCCAT+GGG + chr3_1:72150139-72150158 None:intergenic 40.0%
TCACATCCACTTCATGATGT+TGG - chr3_1:72150277-72150296 Msa0373120:intron 40.0%
CACATCCACTTCATGATGTT+GGG - chr3_1:72150278-72150297 Msa0373120:intron 40.0%
ACATCCACTTCATGATGTTG+GGG - chr3_1:72150279-72150298 Msa0373120:intron 40.0%
GAACCAATTCGCGTTGTTGA+CGG + chr3_1:72145288-72145307 None:intergenic 45.0%
TGAAGATGAGAGGAAGGACA+TGG + chr3_1:72145364-72145383 None:intergenic 45.0%
!! GTAACTTGCGAGGGCATTTA+GGG + chr3_1:72145440-72145459 None:intergenic 45.0%
!! ACGAAGAGCATCATGAGAGT+CGG + chr3_1:72145589-72145608 None:intergenic 45.0%
TGTGTTGTATTTGCCAACGG+GGG - chr3_1:72145871-72145890 Msa0373120:intron 45.0%
TTGTCGTGTCCGTACTTCAT+AGG + chr3_1:72145903-72145922 None:intergenic 45.0%
TATGAAGCACGGACACTACT+CGG + chr3_1:72146034-72146053 None:intergenic 45.0%
! CTTGTTTGGAACTCCGACAT+TGG - chr3_1:72146084-72146103 Msa0373120:intron 45.0%
GTAGAGATCGTCAGATTGGA+AGG - chr3_1:72146246-72146265 Msa0373120:intron 45.0%
GCAAACGCATATAGAGACAG+TGG - chr3_1:72146271-72146290 Msa0373120:intron 45.0%
!! AGGGTTGAGGGTTTTAATGC+TGG - chr3_1:72146310-72146329 Msa0373120:intron 45.0%
!! GTTGAGGGTTTTAATGCTGG+AGG - chr3_1:72146313-72146332 Msa0373120:intron 45.0%
TAGAGTAAAACCGAACCAGC+AGG + chr3_1:72146339-72146358 None:intergenic 45.0%
TACCTTGACATGAATGCACG+GGG + chr3_1:72146393-72146412 None:intergenic 45.0%
CGGTTCCATCTTATCAGTGA+AGG - chr3_1:72146724-72146743 Msa0373120:intron 45.0%
GCAAATAGGGTTGGATTCAC+AGG + chr3_1:72146785-72146804 None:intergenic 45.0%
! TTTTATGCCGAAGCTTCAGC+TGG + chr3_1:72146827-72146846 None:intergenic 45.0%
AGACGAGGAGAAACGGAAAT+TGG - chr3_1:72147118-72147137 Msa0373120:intron 45.0%
GCAGGTCTTTATCACCTTAC+CGG - chr3_1:72147351-72147370 Msa0373120:intron 45.0%
AGATCCACTGCTAGAAACTC+TGG - chr3_1:72147943-72147962 Msa0373120:intron 45.0%
!! TTGTCCAGAGTTTCTAGCAG+TGG + chr3_1:72147950-72147969 None:intergenic 45.0%
TCATACACAAAAGGGACGGA+GGG + chr3_1:72148017-72148036 None:intergenic 45.0%
ATCATACACAAAAGGGACGG+AGG + chr3_1:72148018-72148037 None:intergenic 45.0%
ACACGTCTGTGTGAATATGC+GGG - chr3_1:72148282-72148301 Msa0373120:intron 45.0%
! CCGAGTTTCATTTTGCAGGA+TGG - chr3_1:72148370-72148389 Msa0373120:intron 45.0%
GAAGAGCTATTGCAGGAAGA+TGG - chr3_1:72148469-72148488 Msa0373120:CDS 45.0%
ATTGAAACCGTATGGGGCAA+GGG + chr3_1:72148561-72148580 None:intergenic 45.0%
TATTGAAACCGTATGGGGCA+AGG + chr3_1:72148562-72148581 None:intergenic 45.0%
AACGAAAGCAGATGCCAAAG+TGG - chr3_1:72148670-72148689 Msa0373120:intron 45.0%
!! GATGGTGGAATCTCGGTATT+AGG - chr3_1:72148883-72148902 Msa0373120:intron 45.0%
!! CAACCATCTCCTTAGCTTGT+AGG + chr3_1:72149145-72149164 None:intergenic 45.0%
CAGACAATTCGGATGTAGAC+TGG + chr3_1:72149309-72149328 None:intergenic 45.0%
AAAGGATCAGAGCAGGTCTT+AGG + chr3_1:72149386-72149405 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG - chr3_1:72149760-72149779 Msa0373120:intron 45.0%
TGACGACTCCTTTCCTATTC+AGG - chr3_1:72149884-72149903 Msa0373120:intron 45.0%
GACGACTCCTTTCCTATTCA+GGG - chr3_1:72149885-72149904 Msa0373120:intron 45.0%
GATGCAAGAATCAGTCGTCA+GGG - chr3_1:72149978-72149997 Msa0373120:intron 45.0%
ATGCAAGAATCAGTCGTCAG+GGG - chr3_1:72149979-72149998 Msa0373120:intron 45.0%
TCAGGGGTTTGAAAAACGAG+TGG - chr3_1:72149995-72150014 Msa0373120:intron 45.0%
TCTCACAAGACTTGCAGCTT+TGG - chr3_1:72150018-72150037 Msa0373120:intron 45.0%
GAGAGTAAACCTTTGGTCCA+TGG + chr3_1:72150140-72150159 None:intergenic 45.0%
GAGCAAGGAGAGTAAACCTT+TGG + chr3_1:72150147-72150166 None:intergenic 45.0%
ATGTATCTCCTGAACCTGGA+TGG + chr3_1:72150417-72150436 None:intergenic 45.0%
TCAGATGTATCTCCTGAACC+TGG + chr3_1:72150421-72150440 None:intergenic 45.0%
TCTGAAAACATCCCTTGACC+AGG - chr3_1:72150436-72150455 Msa0373120:CDS 45.0%
AAAACATCCCTTGACCAGGA+AGG - chr3_1:72150440-72150459 Msa0373120:CDS 45.0%
TTTGATGCCTTCCTGGTCAA+GGG + chr3_1:72150450-72150469 None:intergenic 45.0%
! TTTTGATGCCTTCCTGGTCA+AGG + chr3_1:72150451-72150470 None:intergenic 45.0%
!! TGACCAGGAAGGCATCAAAA+AGG - chr3_1:72150451-72150470 Msa0373120:CDS 45.0%
! TTGCCTTTTTGATGCCTTCC+TGG + chr3_1:72150457-72150476 None:intergenic 45.0%
!! ATATATTCATAAATATAAAA+AGG + chr3_1:72150354-72150373 None:intergenic 5.0%
TGTTGACGGTGGAGAAGAAG+AGG + chr3_1:72145274-72145293 None:intergenic 50.0%
GCTATCTTCTCTGCAACCCT+AGG - chr3_1:72145327-72145346 Msa0373120:three_prime_UTR 50.0%
TCTGCAACCCTAGGTTCCTT+CGG - chr3_1:72145336-72145355 Msa0373120:three_prime_UTR 50.0%
!! GGTAACTTGCGAGGGCATTT+AGG + chr3_1:72145441-72145460 None:intergenic 50.0%
! AAGGTGGTGGTAACTTGCGA+GGG + chr3_1:72145449-72145468 None:intergenic 50.0%
! GATGATGACGATAGTGCCAC+TGG + chr3_1:72145473-72145492 None:intergenic 50.0%
!! CGAAGAGCATCATGAGAGTC+GGG + chr3_1:72145588-72145607 None:intergenic 50.0%
ATGATGCTCTTCGTCAAGCC+AGG - chr3_1:72145595-72145614 Msa0373120:intron 50.0%
TGATGCTCTTCGTCAAGCCA+GGG - chr3_1:72145596-72145615 Msa0373120:intron 50.0%
TTGTATTTGCCAACGGGGGT+TGG - chr3_1:72145875-72145894 Msa0373120:intron 50.0%
! GGGTTGGCACCTATGAAGTA+CGG - chr3_1:72145891-72145910 Msa0373120:CDS 50.0%
! TACTCGGATTAGGCGTATCC+CGG + chr3_1:72146018-72146037 None:intergenic 50.0%
GAGTAGTGTCCGTGCTTCAT+AGG - chr3_1:72146033-72146052 Msa0373120:intron 50.0%
AGTGTCCGTGCTTCATAGGT+TGG - chr3_1:72146037-72146056 Msa0373120:intron 50.0%
! TTTTAATGCTGGAGGCCTGC+TGG - chr3_1:72146321-72146340 Msa0373120:intron 50.0%
AGAGAAGCCGCAAATAGGGT+TGG + chr3_1:72146794-72146813 None:intergenic 50.0%
! AGCAAGAGTCGGTTCTGTTG+AGG - chr3_1:72147208-72147227 Msa0373120:intron 50.0%
! GTCGGTTCTGTTGAGGACTA+TGG - chr3_1:72147215-72147234 Msa0373120:intron 50.0%
GTGACATCACAGAATGCTGC+AGG - chr3_1:72147333-72147352 Msa0373120:intron 50.0%
CACGTCTGTGTGAATATGCG+GGG - chr3_1:72148283-72148302 Msa0373120:intron 50.0%
! TCAAGTATTGTCTCCAGCCC+CGG + chr3_1:72148451-72148470 None:intergenic 50.0%
AGACATCCTTGATTGCTGCG+CGG - chr3_1:72148784-72148803 Msa0373120:CDS 50.0%
CGATGCAAGAATCAGTCGTC+AGG - chr3_1:72149977-72149996 Msa0373120:intron 50.0%
GTAAACCTTTGGTCCATGGG+AGG + chr3_1:72150136-72150155 None:intergenic 50.0%
TTTACTCTCCTTGCTCGAGC+TGG - chr3_1:72150151-72150170 Msa0373120:intron 50.0%
ATCCTGTGTGTGATCCATCC+AGG - chr3_1:72150400-72150419 Msa0373120:CDS 50.0%
AACCTGGATGGATCACACAC+AGG + chr3_1:72150405-72150424 None:intergenic 50.0%
TGTGTGATCCATCCAGGTTC+AGG - chr3_1:72150406-72150425 Msa0373120:CDS 50.0%
CGGTGGAGAAGAAGAGGAAG+AGG + chr3_1:72145268-72145287 None:intergenic 55.0%
CCAATTCGCGTTGTTGACGG+TGG + chr3_1:72145285-72145304 None:intergenic 55.0%
CCACCGTCAACAACGCGAAT+TGG - chr3_1:72145282-72145301 Msa0373120:three_prime_UTR 55.0%
! CATGGCACCGAAGGAACCTA+GGG + chr3_1:72145346-72145365 None:intergenic 55.0%
! ACATGGCACCGAAGGAACCT+AGG + chr3_1:72145347-72145366 None:intergenic 55.0%
! CAAGGTGGTGGTAACTTGCG+AGG + chr3_1:72145450-72145469 None:intergenic 55.0%
AGTTACCACCACCTTGCCAG+TGG - chr3_1:72145454-72145473 Msa0373120:CDS 55.0%
! TGACGATAGTGCCACTGGCA+AGG + chr3_1:72145468-72145487 None:intergenic 55.0%
CATGAGAGTCGGGAGCAGAA+GGG + chr3_1:72145578-72145597 None:intergenic 55.0%
TCATGAGAGTCGGGAGCAGA+AGG + chr3_1:72145579-72145598 None:intergenic 55.0%
ACACGACACTTGTCCGACAC+CGG - chr3_1:72145996-72146015 Msa0373120:intron 55.0%
GATTAGGCGTATCCCGGTGT+CGG + chr3_1:72146012-72146031 None:intergenic 55.0%
GCACGGACACTACTCGGATT+AGG + chr3_1:72146028-72146047 None:intergenic 55.0%
AGCCCCGTGCATTCATGTCA+AGG - chr3_1:72146388-72146407 Msa0373120:intron 55.0%
GTTCATCTGCGCTTCCCTGA+CGG - chr3_1:72147245-72147264 Msa0373120:intron 55.0%
! CAGTCGCATCGATCCCTTAC+CGG - chr3_1:72148429-72148448 Msa0373120:intron 55.0%
! AGTCGCATCGATCCCTTACC+GGG - chr3_1:72148430-72148449 Msa0373120:intron 55.0%
ATTGTCTCCAGCCCCGGTAA+GGG + chr3_1:72148445-72148464 None:intergenic 55.0%
TATTGTCTCCAGCCCCGGTA+AGG + chr3_1:72148446-72148465 None:intergenic 55.0%
CATCCATCCCTTGCCCCATA+CGG - chr3_1:72148551-72148570 Msa0373120:CDS 55.0%
AAACCGTATGGGGCAAGGGA+TGG + chr3_1:72148557-72148576 None:intergenic 55.0%
GACATCCTTGATTGCTGCGC+GGG - chr3_1:72148785-72148804 Msa0373120:CDS 55.0%
CTAATCCCGCGCAGCAATCA+AGG + chr3_1:72148793-72148812 None:intergenic 55.0%
! GATTGCTGCGCGGGATTAGT+AGG - chr3_1:72148794-72148813 Msa0373120:CDS 55.0%
GGGACCCCAACATCATGAAG+TGG + chr3_1:72150286-72150305 None:intergenic 55.0%
! GAGGAAGGACATGGCACCGA+AGG + chr3_1:72145355-72145374 None:intergenic 60.0%
! TAGTGCCACTGGCAAGGTGG+TGG + chr3_1:72145462-72145481 None:intergenic 60.0%
! CGATAGTGCCACTGGCAAGG+TGG + chr3_1:72145465-72145484 None:intergenic 60.0%
TCATAGGTGCCAACCCCCGT+TGG + chr3_1:72145887-72145906 None:intergenic 60.0%
CACGACACTTGTCCGACACC+GGG - chr3_1:72145997-72146016 Msa0373120:intron 60.0%
! ATGCTGGAGGCCTGCTGGTT+CGG - chr3_1:72146326-72146345 Msa0373120:intron 60.0%
ACGGGGCTCAGCTGTGAGAA+CGG + chr3_1:72146376-72146395 None:intergenic 60.0%
! GTCGCATCGATCCCTTACCG+GGG - chr3_1:72148431-72148450 Msa0373120:intron 60.0%
!! TTGGTCCATGGGAGGTGCCT+GGG + chr3_1:72150128-72150147 None:intergenic 60.0%
!! TTTGGTCCATGGGAGGTGCC+TGG + chr3_1:72150129-72150148 None:intergenic 60.0%
AGGCACCTCCCATGGACCAA+AGG - chr3_1:72150128-72150147 Msa0373120:intron 60.0%
CGGGGCTCAGCTGTGAGAAC+GGG + chr3_1:72146375-72146394 None:intergenic 65.0%
CATCGATCCCTTACCGGGGC+TGG - chr3_1:72148435-72148454 Msa0373120:intron 65.0%
GTCATCCCAGGCACCTCCCA+TGG - chr3_1:72150120-72150139 Msa0373120:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72145179 72150759 72145179 ID=Msa0373120;Name=Msa0373120
chr3_1 mRNA 72145179 72150759 72145179 ID=Msa0373120-mRNA-1;Parent=Msa0373120;Name=Msa0373120-mRNA-1;_AED=0.21;_eAED=0.21;_QI=145|1|1|1|1|1|10|254|398
chr3_1 exon 72145179 72145516 72145179 ID=Msa0373120-mRNA-1:exon:16007;Parent=Msa0373120-mRNA-1
chr3_1 exon 72145758 72145808 72145758 ID=Msa0373120-mRNA-1:exon:16006;Parent=Msa0373120-mRNA-1
chr3_1 exon 72145889 72145967 72145889 ID=Msa0373120-mRNA-1:exon:16005;Parent=Msa0373120-mRNA-1
chr3_1 exon 72147447 72147550 72147447 ID=Msa0373120-mRNA-1:exon:16004;Parent=Msa0373120-mRNA-1
chr3_1 exon 72147956 72148037 72147956 ID=Msa0373120-mRNA-1:exon:16003;Parent=Msa0373120-mRNA-1
chr3_1 exon 72148463 72148583 72148463 ID=Msa0373120-mRNA-1:exon:16002;Parent=Msa0373120-mRNA-1
chr3_1 exon 72148672 72148831 72148672 ID=Msa0373120-mRNA-1:exon:16001;Parent=Msa0373120-mRNA-1
chr3_1 exon 72149193 72149254 72149193 ID=Msa0373120-mRNA-1:exon:16000;Parent=Msa0373120-mRNA-1
chr3_1 exon 72149529 72149688 72149529 ID=Msa0373120-mRNA-1:exon:15999;Parent=Msa0373120-mRNA-1
chr3_1 exon 72150321 72150759 72150321 ID=Msa0373120-mRNA-1:exon:15998;Parent=Msa0373120-mRNA-1
chr3_1 five_prime_UTR 72150615 72150759 72150615 ID=Msa0373120-mRNA-1:five_prime_utr;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72150321 72150614 72150321 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72149529 72149688 72149529 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72149193 72149254 72149193 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72148672 72148831 72148672 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72148463 72148583 72148463 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72147956 72148037 72147956 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72147447 72147550 72147447 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72145889 72145967 72145889 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72145758 72145808 72145758 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 CDS 72145433 72145516 72145433 ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1 three_prime_UTR 72145179 72145432 72145179 ID=Msa0373120-mRNA-1:three_prime_utr;Parent=Msa0373120-mRNA-1
Gene Sequence

>Msa0373120

ATGGCTATCTTCTCTGCAACCCTAGGTTCCTTCGGTGCCATGTCCTTCCTCTCATCTTCACAATCACAACAACACGACCCTTCTTCTTCCTCAATCGTCAATCCTTTCAATTTCCCTAAATGCCCTCGCAAGTTACCACCACCTTGCCAGTGGCACTATCGTCATCATCACAATTCTAAAATCATGGTATCTAGTAGTAGTAGTAGTAACAATACTCATATTGATGAATTCGACAGTGGTCTTCTTCAACGCCCTTCTGCTCCCGACTCTCATGATGCTCTTCGTCAAGCCAGGAGATCGTCAGATTGGAAGGCTGCAAACGCATATAGAGACAGTGGACTCATTTACAATGGTAGGGTTGAGGGTTTTAATGCTGGAGGCCTGCTGGTTCGGTTTTACTCTATCATGGGCTTTCTCCCGTTCTCACAGCTGAGCCCCGTGCATTCATGTCAAGAACCAGATAAAACTATCCAAGAACTTGCAAGAGAGTTGATCGGTTCCATCTTATCAGTGAAGGTAATTATAGTAGACGAGGAGAAACGGAAATTGGTCTTATCTGAAAAGGAAGCTTCATGGTTTAAATATTCAAAACATATCAACATAGGGGACCTTTTTGAAGCAAGAGTCGGTTCTGTTGAGGACTATGGTGCTTTTGTTCATCTGCGCTTCCCTGACGGTCTTTATCACCTTACCGGACTAATACATATCTCAGAAGTGTCGTGGGATCTAGTTCAAGATGTAAGAGACTTCTTAAGAGAAGGTGAAGAAGTGAGGGTCAAAGTTATCAGTATTGATACTGTAAAAATGAGGCTTACACTGTCAATTAAACAGCTAGAAGAAGATCCACTGCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTTCAGCTGTTCCCGATTCTTTCAGCAGTACTACTAGCAGTCGCATCGATCCCTTACCGGGGCTGGAGACAATACTTGAAGAGCTATTGCAGGAAGATGGCATATACGATGCAAGAATCAGTCGTCAGGGGTTTGAAAAACGAGTGGTCTCACAAGACTTGCAGCTTTGGCTTTCTAACGCACCTCCCATGGACCAAAGGTTTACTCTCCTTGCTCGAGCTGGAAGACAGGTTCAGGAGATACATCTGAAAACATCCCTTGACCAGGAAGGCATCAAAAAGGCAATACAACGAGTATTGGAGCGTGTTCCTTGA

Protein sequence

>Msa0373120

MAIFSATLGSFGAMSFLSSSQSQQHDPSSSSIVNPFNFPKCPRKLPPPCQWHYRHHHNSKIMVSSSSSSNNTHIDEFDSGLLQRPSAPDSHDALRQARRSSDWKAANAYRDSGLIYNGRVEGFNAGGLLVRFYSIMGFLPFSQLSPVHSCQEPDKTIQELARELIGSILSVKVIIVDEEKRKLVLSEKEASWFKYSKHINIGDLFEARVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIKQLEEDPLLETLDKVIPQDGSAVPDSFSSTTSSRIDPLPGLETILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPMDQRFTLLARAGRQVQEIHLKTSLDQEGIKKAIQRVLERVP*