AlfalfaGEDB | Msa0373120

M. sativa cultivar zhongmu-4 / Msa0373120

KEGG: -
GO: -
PFAM: PF00575.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373120	XP_003601737.1	94.250	400	20	2	1	398	1	399	0.0	692

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373120	sp\|P29344\|RR1_SPIOL	30.000	190	115	3	93	282	164	335	3.64e-20	95.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373120	G7JBD3	94.250	400	20	2	1	398	1	399	0.0	692

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0373120	0.879444	1.240480e-69	-8.615850e-47
Msa0001550	Msa0373120	0.826878	2.130701e-54	-8.615850e-47
Msa0002110	Msa0373120	0.891546	3.600349e-74	-8.615850e-47
Msa0002690	Msa0373120	0.882165	1.309080e-70	-8.615850e-47
Msa0002700	Msa0373120	0.880573	4.910222e-70	-8.615850e-47
Msa0004180	Msa0373120	0.875082	4.078331e-68	-8.615850e-47
Msa0005500	Msa0373120	0.800687	1.282134e-48	-8.615850e-47
Msa0007570	Msa0373120	0.854161	1.479730e-61	-8.615850e-47
Msa0007810	Msa0373120	0.893936	3.948685e-75	-8.615850e-47
Msa0011060	Msa0373120	0.869708	2.529145e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373120	MtrunA17_Chr3g0122171	94.250	400	20	2	1	398	1	399	0.0	692
Msa0373120	MtrunA17_Chr2g0293821	25.431	232	147	5	51	282	127	332	3.11e-17	82.8
Msa0373120	MtrunA17_Chr8g0386481	22.703	370	197	10	101	397	534	887	3.86e-17	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0373120	AT3G23700.1	69.799	298	90	0	101	398	95	392	3.05e-147	423
Msa0373120	AT1G12800.1	28.175	252	161	7	154	397	527	766	1.50e-19	91.3
Msa0373120	AT5G30510.1	31.053	190	113	3	93	282	167	338	1.92e-19	90.1

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Find 121 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCCCTTGACCAGGA+AGG	0.640351	3_1:-72145476	Msa0373120:CDS
AAAGGCAATACAACGAGTAT+TGG	0.467765	3_1:-72145447	Msa0373120:CDS
AAATACCTTCACTGATAAGA+TGG	0.485562	3_1:+72149187	None:intergenic
AACCGACTCTTGCTTCAAAA+AGG	0.402684	3_1:+72148717	None:intergenic
AAGAGAAGGTGAAGAAGTGA+GGG	0.569971	3_1:-72148485	Msa0373120:CDS
AAGAGCTATTGCAGGAAGAT+GGG	0.530885	3_1:-72147446	Msa0373120:intron
AAGAGGAAGAGGAATTGGTT+TGG	0.384366	3_1:+72150662	None:intergenic
AAGGTGGTGGTAACTTGCGA+GGG	0.646784	3_1:+72150470	None:intergenic
AATACTTGAAGAGCTATTGC+AGG	0.471841	3_1:-72147454	Msa0373120:CDS
AATTGGTTTGGATTGAATTT+TGG	0.165463	3_1:+72150674	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATGTGTTGTATTTGCCAA+CGG	-	chr3_1:72145868-72145887	Msa0373120:intron	30.0%
TGTAATAATATGTGTCGTCT+CGG	-	chr3_1:72145973-72145992	Msa0373120:intron	30.0%
AATTTGCAATAAGTCAGTAG+TGG	+	chr3_1:72146646-72146665	None:intergenic	30.0%
AAATACCTTCACTGATAAGA+TGG	+	chr3_1:72146732-72146751	None:intergenic	30.0%
ACCTAATTCAGCATAAACAA+CGG	+	chr3_1:72147005-72147024	None:intergenic	30.0%
TTAGGTAATTATAGTAGACG+AGG	-	chr3_1:72147103-72147122	Msa0373120:intron	30.0%
AAAAAAGTCAACATGCATGT+TGG	+	chr3_1:72147863-72147882	None:intergenic	30.0%
AATCTTGCAGTGTAAAAATG+AGG	-	chr3_1:72147891-72147910	Msa0373120:intron	30.0%
ATTATCATACACAAAAGGGA+CGG	+	chr3_1:72148021-72148040	None:intergenic	30.0%
ACACCTACTAATTTGAAAGA+GGG	-	chr3_1:72148155-72148174	Msa0373120:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	72145179	72150759	72145179	ID=Msa0373120;Name=Msa0373120
chr3_1	mRNA	72145179	72150759	72145179	ID=Msa0373120-mRNA-1;Parent=Msa0373120;Name=Msa0373120-mRNA-1;_AED=0.21;_eAED=0.21;_QI=145\|1\|1\|1\|1\|1\|10\|254\|398
chr3_1	exon	72145179	72145516	72145179	ID=Msa0373120-mRNA-1:exon:16007;Parent=Msa0373120-mRNA-1
chr3_1	exon	72145758	72145808	72145758	ID=Msa0373120-mRNA-1:exon:16006;Parent=Msa0373120-mRNA-1
chr3_1	exon	72145889	72145967	72145889	ID=Msa0373120-mRNA-1:exon:16005;Parent=Msa0373120-mRNA-1
chr3_1	exon	72147447	72147550	72147447	ID=Msa0373120-mRNA-1:exon:16004;Parent=Msa0373120-mRNA-1
chr3_1	exon	72147956	72148037	72147956	ID=Msa0373120-mRNA-1:exon:16003;Parent=Msa0373120-mRNA-1
chr3_1	exon	72148463	72148583	72148463	ID=Msa0373120-mRNA-1:exon:16002;Parent=Msa0373120-mRNA-1
chr3_1	exon	72148672	72148831	72148672	ID=Msa0373120-mRNA-1:exon:16001;Parent=Msa0373120-mRNA-1
chr3_1	exon	72149193	72149254	72149193	ID=Msa0373120-mRNA-1:exon:16000;Parent=Msa0373120-mRNA-1
chr3_1	exon	72149529	72149688	72149529	ID=Msa0373120-mRNA-1:exon:15999;Parent=Msa0373120-mRNA-1
chr3_1	exon	72150321	72150759	72150321	ID=Msa0373120-mRNA-1:exon:15998;Parent=Msa0373120-mRNA-1
chr3_1	five_prime_UTR	72150615	72150759	72150615	ID=Msa0373120-mRNA-1:five_prime_utr;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72150321	72150614	72150321	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72149529	72149688	72149529	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72149193	72149254	72149193	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72148672	72148831	72148672	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72148463	72148583	72148463	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72147956	72148037	72147956	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72147447	72147550	72147447	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72145889	72145967	72145889	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72145758	72145808	72145758	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	CDS	72145433	72145516	72145433	ID=Msa0373120-mRNA-1:cds;Parent=Msa0373120-mRNA-1
chr3_1	three_prime_UTR	72145179	72145432	72145179	ID=Msa0373120-mRNA-1:three_prime_utr;Parent=Msa0373120-mRNA-1

Gene Sequence

>Msa0373120

ATGGCTATCTTCTCTGCAACCCTAGGTTCCTTCGGTGCCATGTCCTTCCTCTCATCTTCACAATCACAACAACACGACCCTTCTTCTTCCTCAATCGTCAATCCTTTCAATTTCCCTAAATGCCCTCGCAAGTTACCACCACCTTGCCAGTGGCACTATCGTCATCATCACAATTCTAAAATCATGGTATCTAGTAGTAGTAGTAGTAACAATACTCATATTGATGAATTCGACAGTGGTCTTCTTCAACGCCCTTCTGCTCCCGACTCTCATGATGCTCTTCGTCAAGCCAGGAGATCGTCAGATTGGAAGGCTGCAAACGCATATAGAGACAGTGGACTCATTTACAATGGTAGGGTTGAGGGTTTTAATGCTGGAGGCCTGCTGGTTCGGTTTTACTCTATCATGGGCTTTCTCCCGTTCTCACAGCTGAGCCCCGTGCATTCATGTCAAGAACCAGATAAAACTATCCAAGAACTTGCAAGAGAGTTGATCGGTTCCATCTTATCAGTGAAGGTAATTATAGTAGACGAGGAGAAACGGAAATTGGTCTTATCTGAAAAGGAAGCTTCATGGTTTAAATATTCAAAACATATCAACATAGGGGACCTTTTTGAAGCAAGAGTCGGTTCTGTTGAGGACTATGGTGCTTTTGTTCATCTGCGCTTCCCTGACGGTCTTTATCACCTTACCGGACTAATACATATCTCAGAAGTGTCGTGGGATCTAGTTCAAGATGTAAGAGACTTCTTAAGAGAAGGTGAAGAAGTGAGGGTCAAAGTTATCAGTATTGATACTGTAAAAATGAGGCTTACACTGTCAATTAAACAGCTAGAAGAAGATCCACTGCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTTCAGCTGTTCCCGATTCTTTCAGCAGTACTACTAGCAGTCGCATCGATCCCTTACCGGGGCTGGAGACAATACTTGAAGAGCTATTGCAGGAAGATGGCATATACGATGCAAGAATCAGTCGTCAGGGGTTTGAAAAACGAGTGGTCTCACAAGACTTGCAGCTTTGGCTTTCTAACGCACCTCCCATGGACCAAAGGTTTACTCTCCTTGCTCGAGCTGGAAGACAGGTTCAGGAGATACATCTGAAAACATCCCTTGACCAGGAAGGCATCAAAAAGGCAATACAACGAGTATTGGAGCGTGTTCCTTGA

Protein sequence

>Msa0373120

MAIFSATLGSFGAMSFLSSSQSQQHDPSSSSIVNPFNFPKCPRKLPPPCQWHYRHHHNSKIMVSSSSSSNNTHIDEFDSGLLQRPSAPDSHDALRQARRSSDWKAANAYRDSGLIYNGRVEGFNAGGLLVRFYSIMGFLPFSQLSPVHSCQEPDKTIQELARELIGSILSVKVIIVDEEKRKLVLSEKEASWFKYSKHINIGDLFEARVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIKQLEEDPLLETLDKVIPQDGSAVPDSFSSTTSSRIDPLPGLETILEELLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPMDQRFTLLARAGRQVQEIHLKTSLDQEGIKKAIQRVLERVP*