AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0237690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237690 MtrunA17_Chr2g0287211 94.159 428 6 1 1 409 1 428 0.0 827
Msa0237690 MtrunA17_Chr2g0287181 90.421 428 22 1 1 409 1 428 0.0 800
Msa0237690 MtrunA17_Chr6g0479141 73.596 356 75 1 57 393 1 356 0.0 562
Msa0237690 MtrunA17_Chr3g0110261 73.876 356 74 1 57 393 1 356 0.0 561
Msa0237690 MtrunA17_Chr5g0434471 70.255 353 86 1 60 393 5 357 0.0 535
Msa0237690 MtrunA17_Chr8g0364341 83.636 55 9 0 289 343 9 63 1.57e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0237690 AT5G35630.3 77.494 431 74 4 1 409 1 430 0.0 686
Msa0237690 AT5G35630.2 77.494 431 74 4 1 409 1 430 0.0 686
Msa0237690 AT5G35630.1 77.494 431 74 4 1 409 1 430 0.0 686
Msa0237690 AT5G37600.1 74.438 356 72 1 57 393 1 356 0.0 565
Msa0237690 AT5G16570.1 74.438 356 72 1 57 393 1 356 0.0 564
Msa0237690 AT1G66200.1 75.000 356 70 1 57 393 1 356 0.0 563
Msa0237690 AT1G66200.3 73.151 365 70 2 57 393 1 365 0.0 555
Msa0237690 AT3G17820.1 71.955 353 80 1 57 390 1 353 0.0 543
Msa0237690 AT1G48470.1 70.414 338 81 1 72 390 16 353 0.0 519
Msa0237690 AT1G66200.2 72.222 252 51 1 57 289 1 252 1.19e-133 384
Msa0237690 AT5G16570.2 70.293 239 52 1 57 276 1 239 2.13e-123 357

Find 147 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCTTGGTGCTCTTTA+AGG 0.126003 2_2:-10954320 Msa0237690:five_prime_UTR
GCAGAACATGGCACAGATTT+TGG 0.155664 2_2:-10953034 Msa0237690:intron
GGTTGAGGATTTACTTAATT+TGG 0.180473 2_2:-10952851 Msa0237690:CDS
CCGCGGTGGTAACAACATTT+TGG 0.220354 2_2:-10952067 Msa0237690:intron
CTCACCTTTGCCATTCTTCT+CGG 0.229339 2_2:+10950246 None:intergenic
TTGAAGCTGGTGATCATATC+TGG 0.250556 2_2:-10951079 Msa0237690:CDS
TATAGTACCTCAATTGGTTT+TGG 0.253546 2_2:+10950791 None:intergenic
ATATGTGGTGACAGCCTTAT+TGG 0.284085 2_2:-10949974 Msa0237690:CDS
CACAACTCTCACACTCTATA+TGG 0.285360 2_2:-10954224 Msa0237690:five_prime_UTR
AGTCTAAATCTATTGATTAA+TGG 0.290344 2_2:-10949881 Msa0237690:exon
GCCCCGGCGGCGCAGTAATA+AGG 0.290627 2_2:+10951503 None:intergenic
GCTTTATGTCTCTTATTTGT+AGG 0.306213 2_2:+10951916 None:intergenic
CTTCTCTTGGTGCTCTTTAA+GGG 0.310657 2_2:-10954319 Msa0237690:five_prime_UTR
ATCAAAGATGTGGAGTTCTT+TGG 0.311844 2_2:-10952950 Msa0237690:CDS
TGCTGCAGTTTGTGAGGTGC+TGG 0.317755 2_2:-10949849 Msa0237690:three_prime_UTR
TTCACCGAGGACATTTATAA+TGG 0.329802 2_2:-10949557 Msa0237690:three_prime_UTR
TATATTATGAAGATATTGTT+TGG 0.331941 2_2:-10949796 Msa0237690:three_prime_UTR
CATAATATAATAAATCTAAA+TGG 0.338711 2_2:+10949810 None:intergenic
AGCTCAGAGGGATGCTCAAC+AGG 0.340393 2_2:+10952277 None:intergenic
AAAGCTGCAAACTTTGGAAA+TGG 0.342244 2_2:+10954165 None:intergenic
CAGGATGTCACACCAATTAC+AGG 0.343535 2_2:-10950679 Msa0237690:intron
GGAATTTCAGCCTCAACCTT+TGG 0.352234 2_2:+10951874 None:intergenic
TTTAACCTTGACAGGGTGAT+TGG 0.356608 2_2:-10950709 Msa0237690:intron
TGGCCTGTTGGTGGCTATCC+TGG 0.366008 2_2:-10951631 Msa0237690:CDS
TAATGTACTCTCTGCCAATA+AGG 0.366195 2_2:+10949960 None:intergenic
TTTCACATCTGTTTGAAGTA+AGG 0.375190 2_2:+10951666 None:intergenic
TCAACTCTGGCACCATCAAC+AGG 0.381942 2_2:-10952873 Msa0237690:CDS
GAATTTCAGCCTCAACCTTT+GGG 0.391287 2_2:+10951875 None:intergenic
AATAAGGCTGTCACCACATA+TGG 0.395016 2_2:+10949976 None:intergenic
TGTCTTGATTGCAGGTTACT+TGG 0.398318 2_2:-10950028 Msa0237690:intron
TAAATCCTCAACCCTGTTGA+TGG 0.404683 2_2:+10952861 None:intergenic
AAGCATTATAGTACCTCAAT+TGG 0.404986 2_2:+10950785 None:intergenic
GGAAATGAGAGAAGGTTGAC+AGG 0.416285 2_2:-10950458 Msa0237690:CDS
GGTCCTTATTACTGCGCCGC+CGG 0.416746 2_2:-10951506 Msa0237690:CDS
CTTGTCTGACATTGTATAGA+AGG 0.418531 2_2:+10953009 None:intergenic
ACAGATGTGAAATGGCCATT+AGG 0.428436 2_2:-10951655 Msa0237690:CDS
GTCCTTATTACTGCGCCGCC+GGG 0.429665 2_2:-10951505 Msa0237690:CDS
ATGCTCAACAGGCTTTGATA+TGG 0.434596 2_2:+10952288 None:intergenic
GTGAGAGTTGTGTAAAATAA+AGG 0.435343 2_2:+10954235 None:intergenic
GTGATCATATCTGGGCTTCA+AGG 0.435881 2_2:-10951070 Msa0237690:CDS
GCATAATTGCTGAGTACATC+TGG 0.436205 2_2:-10952807 Msa0237690:intron
TGAAACAGGATTGGTGGAAC+AGG 0.436884 2_2:-10952454 Msa0237690:intron
AAGCTGCAAACTTTGGAAAT+GGG 0.438166 2_2:+10954166 None:intergenic
TACTTCAAACAGATGTGAAA+TGG 0.440857 2_2:-10951663 Msa0237690:CDS
GCCGGGGCAGATAAGTCATT+TGG 0.440872 2_2:-10951488 Msa0237690:CDS
GAGGGAAGATGGAGGATTTG+AGG 0.444775 2_2:-10950546 Msa0237690:CDS
TACAAGGCTTGCTTATATGC+TGG 0.449645 2_2:-10951443 Msa0237690:CDS
ACAAAGAGCATGAGGGAAGA+TGG 0.452148 2_2:-10950557 Msa0237690:CDS
CTTTATGTCTCTTATTTGTA+GGG 0.456048 2_2:+10951917 None:intergenic
TGTGTAAAATAAAGGTTGGT+TGG 0.457964 2_2:+10954243 None:intergenic
TGTCTCTTATTTGTAGGGAT+AGG 0.465641 2_2:+10951922 None:intergenic
TTACAAGTCCAAGCTTCTCT+TGG 0.474113 2_2:-10954332 Msa0237690:five_prime_UTR
GCAATTATGCTGTCAGTGAA+TGG 0.479383 2_2:+10952820 None:intergenic
GGCAGAGAGTACATTATTGT+GGG 0.479550 2_2:-10949953 Msa0237690:CDS
CCACCAACAGGCCAACCTAA+TGG 0.483275 2_2:+10951640 None:intergenic
CAATGTGAACCTTGTGGCGA+AGG 0.487159 2_2:+10950495 None:intergenic
AAGGTTCACATTGAAGCATA+TGG 0.487181 2_2:-10950485 Msa0237690:CDS
GGCTGTGTTTGCATGTGGTA+TGG 0.491287 2_2:-10949704 Msa0237690:three_prime_UTR
TTGCAGGTTACTTGGAAGAC+AGG 0.494206 2_2:-10950020 Msa0237690:intron
TGGTGGCTATCCTGGTCCTC+AGG 0.500616 2_2:-10951623 Msa0237690:intron
CCATTAGGTTGGCCTGTTGG+TGG 0.503990 2_2:-10951640 Msa0237690:CDS
GGACCAGGATAGCCACCAAC+AGG 0.504091 2_2:+10951628 None:intergenic
TGGCTATTCTAATAACGATA+GGG 0.506183 2_2:+10954263 None:intergenic
CAGGCGTCCGGCTTCAAACA+TGG 0.506417 2_2:-10950001 Msa0237690:CDS
TGGCAGAGAGTACATTATTG+TGG 0.507952 2_2:-10949954 Msa0237690:CDS
AGGCTGCCATGCCTAGTCAT+TGG 0.511575 2_2:-10949766 Msa0237690:three_prime_UTR
AGAGTAATGGCAATCAACTC+TGG 0.512452 2_2:-10952886 Msa0237690:CDS
TTCTGCTAAATTCAGAGTAA+TGG 0.515964 2_2:-10952899 Msa0237690:CDS
TTGGCTATTCTAATAACGAT+AGG 0.524575 2_2:+10954262 None:intergenic
CTTCAGTAACCCAAAGGTTG+AGG 0.530081 2_2:-10951884 Msa0237690:CDS
GCTGCAGTTTGTGAGGTGCT+GGG 0.533336 2_2:-10949848 Msa0237690:three_prime_UTR
AGGATTTGAGGTAATAAAGA+AGG 0.535229 2_2:-10950534 Msa0237690:CDS
GGAAGAGACACCGAGAAGAA+TGG 0.536053 2_2:-10950256 Msa0237690:CDS
CTCCACATCTTTGATGAGAT+CGG 0.538614 2_2:+10952958 None:intergenic
TGATGAGATCGGAGTTGCAA+GGG 0.539695 2_2:+10952969 None:intergenic
TTACTTGGAAGACAGGCGTC+CGG 0.542791 2_2:-10950013 Msa0237690:CDS
TCTCGGTGTCTCTTCCCACA+CGG 0.544625 2_2:+10950263 None:intergenic
GAACCTTTCCCTTCGCCACA+AGG 0.547634 2_2:-10950504 Msa0237690:CDS
TTGAATAGCTTCTCTTTCTG+AGG 0.548315 2_2:+10949583 None:intergenic
TGGCACCATCAACAGGGTTG+AGG 0.550831 2_2:-10952866 Msa0237690:CDS
GGATCTTTGAAAATTGCTTG+AGG 0.551311 2_2:+10952093 None:intergenic
TCTAGCACTGGACAAGCCCC+TGG 0.553808 2_2:-10952232 Msa0237690:CDS
TGAAGCTGGTGATCATATCT+GGG 0.554602 2_2:-10951078 Msa0237690:CDS
TTGATGAGATCGGAGTTGCA+AGG 0.555124 2_2:+10952968 None:intergenic
TATTCCATTATAAATGTCCT+CGG 0.556627 2_2:+10949553 None:intergenic
ATCACTTCACTATCTTCACC+AGG 0.558839 2_2:+10952214 None:intergenic
AACTATGACGGATCTAGCAC+TGG 0.559817 2_2:-10952244 Msa0237690:CDS
CACATTGAAGCATATGGAGA+AGG 0.559868 2_2:-10950479 Msa0237690:CDS
GATCCGTCATAGTTCCACTT+AGG 0.563451 2_2:+10952253 None:intergenic
CCTTGATCCAAAACCAATTG+AGG 0.564795 2_2:-10950798 Msa0237690:intron
TATATCTGATGCTCATTACA+AGG 0.567381 2_2:-10951459 Msa0237690:CDS
AGAGCTTCAGCCTCTAGAGT+TGG 0.568683 2_2:+10949928 None:intergenic
AAAGAGCACCAAGAGAAGCT+TGG 0.568886 2_2:+10954324 None:intergenic
TTGTATATCAGATATTTCGT+TGG 0.569347 2_2:-10949725 Msa0237690:three_prime_UTR
TTCAAACATGGATCCATATG+TGG 0.574208 2_2:-10949989 Msa0237690:CDS
CAGGGTGATTGGAATGGTGC+AGG 0.575034 2_2:-10950698 Msa0237690:CDS
CTCCGATCTCATCAAAGATG+TGG 0.575385 2_2:-10952960 Msa0237690:CDS
GAACCTTGTGGCGAAGGGAA+AGG 0.577024 2_2:+10950501 None:intergenic
TGGCCATTAGGTTGGCCTGT+TGG 0.578206 2_2:-10951643 Msa0237690:CDS
TATGGATCCATGTTTGAAGC+CGG 0.582314 2_2:+10949994 None:intergenic
ATGGAGAAGGAAATGAGAGA+AGG 0.582440 2_2:-10950466 Msa0237690:CDS
ACCAAATGACTTATCTGCCC+CGG 0.584020 2_2:+10951487 None:intergenic
CTTCCTAAGTGGAACTATGA+CGG 0.584162 2_2:-10952256 Msa0237690:CDS
AATGGTATTACCTGAGGACC+AGG 0.584702 2_2:+10951613 None:intergenic
CAGCACTGCTGCAGTTTGTG+AGG 0.584949 2_2:-10949855 Msa0237690:three_prime_UTR
CCAAGAAAATGTGTTGATGC+TGG 0.585913 2_2:+10950421 None:intergenic
ATGTGAAATGGCCATTAGGT+TGG 0.587256 2_2:-10951651 Msa0237690:CDS
AATGTGAACCTTGTGGCGAA+GGG 0.589750 2_2:+10950496 None:intergenic
TCATAACCAATGACTAGGCA+TGG 0.596208 2_2:+10949760 None:intergenic
ATCCCTCTGAGCTTCCTAAG+TGG 0.601311 2_2:-10952267 Msa0237690:CDS
CTATATGGTTCCGTGACACA+AGG 0.601382 2_2:-10954209 Msa0237690:five_prime_UTR
ATGTTGTTACCACCGCGGAA+AGG 0.604039 2_2:+10952072 None:intergenic
TCCTTATTACTGCGCCGCCG+GGG 0.605888 2_2:-10951504 Msa0237690:CDS
GGCTATTCTAATAACGATAG+GGG 0.606029 2_2:+10954264 None:intergenic
TCATCTCATAACCAATGACT+AGG 0.607836 2_2:+10949755 None:intergenic
CAGAGAATTACTGAACAAGC+TGG 0.610576 2_2:-10950833 Msa0237690:CDS
TTCAAAGATCCTTTCCGCGG+TGG 0.612743 2_2:-10952081 Msa0237690:CDS
TTCCACTTAGGAAGCTCAGA+GGG 0.616333 2_2:+10952265 None:intergenic
GTAGGGATAGGCTCACCTTG+TGG 0.616926 2_2:+10951934 None:intergenic
CCACACGGATTGAGCATCCA+CGG 0.619918 2_2:+10950278 None:intergenic
AGATATTGTTTGGACAAATG+AGG 0.620103 2_2:-10949786 Msa0237690:three_prime_UTR
CGATAGGGGTGTGCTTTGAG+TGG 0.620656 2_2:+10954278 None:intergenic
TCGTTGGCTGTGTTTGCATG+TGG 0.621670 2_2:-10949709 Msa0237690:three_prime_UTR
CCTAGTGTAGGTATTGAAGC+TGG 0.623241 2_2:-10951092 Msa0237690:intron
GATGAGATCGGAGTTGCAAG+GGG 0.624226 2_2:+10952970 None:intergenic
GACACCGAGAAGAATGGCAA+AGG 0.626801 2_2:-10950250 Msa0237690:intron
CCTTGACAGGGTGATTGGAA+TGG 0.631330 2_2:-10950704 Msa0237690:intron
CACTTCACTATCTTCACCAG+GGG 0.632006 2_2:+10952216 None:intergenic
CGTGGATGCTCAATCCGTGT+GGG 0.632481 2_2:-10950277 Msa0237690:CDS
CCGTGGATGCTCAATCCGTG+TGG 0.633763 2_2:-10950278 Msa0237690:CDS
TGAAATCTTCAGTAACCCAA+AGG 0.645974 2_2:-10951890 Msa0237690:CDS
GGCTTCAAGGTACATCCTTG+AGG 0.647096 2_2:-10951057 Msa0237690:intron
TATGCTGGAATTAACATCAG+TGG 0.654120 2_2:-10951428 Msa0237690:intron
AAGAGCATGAGGGAAGATGG+AGG 0.657505 2_2:-10950554 Msa0237690:CDS
CAACTCTGGCACCATCAACA+GGG 0.659254 2_2:-10952872 Msa0237690:CDS
TGCGATGCTTATACACCACA+AGG 0.660080 2_2:-10951949 Msa0237690:CDS
ATTGTGGGAACCAACTCTAG+AGG 0.660710 2_2:-10949938 Msa0237690:CDS
TTTCAGTACAAAGAGCATGA+GGG 0.669238 2_2:-10950564 Msa0237690:intron
TGAAAATGAGCCTTGTGTCA+CGG 0.669718 2_2:+10954199 None:intergenic
ATGCAGGGAGTGGCTAACCG+TGG 0.669725 2_2:-10950295 Msa0237690:intron
GAGTTGTGTAAAATAAAGGT+TGG 0.680782 2_2:+10954239 None:intergenic
TCACTTCACTATCTTCACCA+GGG 0.684268 2_2:+10952215 None:intergenic
AGGTTGAGGCTGAAATTCCG+TGG 0.684939 2_2:-10951870 Msa0237690:intron
AAATGACTTATCTGCCCCGG+CGG 0.706244 2_2:+10951490 None:intergenic
CCAAAATGTTGTTACCACCG+CGG 0.710389 2_2:+10952067 None:intergenic
GTTCCACTTAGGAAGCTCAG+AGG 0.715738 2_2:+10952264 None:intergenic
ATGCTTCAATGTGAACCTTG+TGG 0.722374 2_2:+10950489 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTATTTATAATTTGATT+AGG + chr2_2:10951150-10951169 None:intergenic 10.0%
!!! ATTAATTTTACTAATTGTTT+TGG - chr2_2:10953157-10953176 Msa0237690:intron 10.0%
!! ATTTATAATATTTATCAACT+TGG + chr2_2:10953302-10953321 None:intergenic 10.0%
!! CATAATATAATAAATCTAAA+TGG + chr2_2:10954083-10954102 None:intergenic 10.0%
!!! TAACAAAGAATATTTCTTTT+TGG + chr2_2:10950216-10950235 None:intergenic 15.0%
!!! AAAATGCTTTTATTTATGTT+AGG - chr2_2:10950697-10950716 Msa0237690:CDS 15.0%
!! AGAATAAAATACATTCATAT+AGG + chr2_2:10951578-10951597 None:intergenic 15.0%
!! ATTTCATAATATTTGCATTT+CGG + chr2_2:10951889-10951908 None:intergenic 15.0%
!!! TGTTTTATTTCAAATTTCAT+AGG - chr2_2:10952305-10952324 Msa0237690:intron 15.0%
!! TAGTAAAATTAATTAGCATA+AGG + chr2_2:10953150-10953169 None:intergenic 15.0%
!! TATATTATGAAGATATTGTT+TGG - chr2_2:10954094-10954113 Msa0237690:intron 15.0%
!!! GACTTGTAATATTTTAGATA+AGG + chr2_2:10949547-10949566 None:intergenic 20.0%
!!! AAATCTCAACATTTGATTTT+TGG - chr2_2:10949911-10949930 Msa0237690:CDS 20.0%
!!! TTTAAGTTAAAAATAAAGGG+TGG - chr2_2:10949959-10949978 Msa0237690:CDS 20.0%
!! TTTAGTAGAAATGAAAAACT+TGG - chr2_2:10950124-10950143 Msa0237690:intron 20.0%
!! TTAGTAGAAATGAAAAACTT+GGG - chr2_2:10950125-10950144 Msa0237690:intron 20.0%
!! ATTATTCACTAATCACTATT+AGG + chr2_2:10950469-10950488 None:intergenic 20.0%
!!! AGATATCATCATTTAAGATA+AGG + chr2_2:10950600-10950619 None:intergenic 20.0%
!! AAATAGATCAAACAATAACA+TGG + chr2_2:10951534-10951553 None:intergenic 20.0%
!! TTGGTAAAATTAAAAAGGTA+AGG + chr2_2:10952059-10952078 None:intergenic 20.0%
!!! AGTAGTTGGTAAAATTAAAA+AGG + chr2_2:10952064-10952083 None:intergenic 20.0%
!!! ATAGAAGATAACTTAACTTT+TGG - chr2_2:10952121-10952140 Msa0237690:intron 20.0%
!! TTGAAATAAAACACAAGAAA+TGG + chr2_2:10952298-10952317 None:intergenic 20.0%
!! AATTAGTGAATTTCAAAATG+TGG - chr2_2:10952328-10952347 Msa0237690:intron 20.0%
!! ATATTCCTTCATATTATATC+AGG - chr2_2:10952362-10952381 Msa0237690:intron 20.0%
!! TATTCCTTCATATTATATCA+GGG - chr2_2:10952363-10952382 Msa0237690:intron 20.0%
!!! AATTTCATTTAACCTACTTT+TGG - chr2_2:10952857-10952876 Msa0237690:CDS 20.0%
!! TCTTATAAAATTGAATATGC+AGG - chr2_2:10953579-10953598 Msa0237690:intron 20.0%
!! CTTATAAAATTGAATATGCA+GGG - chr2_2:10953580-10953599 Msa0237690:intron 20.0%
!! TAATTGTAGACTTTAATCAA+GGG + chr2_2:10953811-10953830 None:intergenic 20.0%
!! ATAATTGTAGACTTTAATCA+AGG + chr2_2:10953812-10953831 None:intergenic 20.0%
!!! AGTCTAAATCTATTGATTAA+TGG - chr2_2:10954009-10954028 Msa0237690:intron 20.0%
!! GAATACCATTTTCATTCTTA+TGG - chr2_2:10949793-10949812 Msa0237690:three_prime_UTR 25.0%
! CTTTACCATAAGAATGAAAA+TGG + chr2_2:10949801-10949820 None:intergenic 25.0%
!! TTTCATCATTTAAGTTCTTG+TGG - chr2_2:10950061-10950080 Msa0237690:intron 25.0%
! AGTGAATAATATGTCTTGTA+AGG - chr2_2:10950479-10950498 Msa0237690:CDS 25.0%
! CATTAACATAAGAATGGAAA+TGG + chr2_2:10951176-10951195 None:intergenic 25.0%
! GTAGTACATTAACATAAGAA+TGG + chr2_2:10951182-10951201 None:intergenic 25.0%
! CTTATGTTAATGTACTACAT+AGG - chr2_2:10951184-10951203 Msa0237690:intron 25.0%
!!! TGATACTTTTTTTCTGAAAC+AGG - chr2_2:10951422-10951441 Msa0237690:intron 25.0%
!! AGTAACATGAATAGAAGTAT+CGG + chr2_2:10951723-10951742 None:intergenic 25.0%
!! CTTTATGTCTCTTATTTGTA+GGG + chr2_2:10951976-10951995 None:intergenic 25.0%
! ATATGTGAAAAACCAAAAGT+AGG + chr2_2:10952872-10952891 None:intergenic 25.0%
! TTCAACTATTTAATACAGAG+AGG - chr2_2:10952898-10952917 Msa0237690:CDS 25.0%
! ACATTATCTTAATTCTGTGT+AGG - chr2_2:10952957-10952976 Msa0237690:CDS 25.0%
!!! CAATAATGGTGTCTTTTTTA+AGG - chr2_2:10952989-10953008 Msa0237690:CDS 25.0%
! TATGTCAAAAAACCTGTAAT+TGG + chr2_2:10953226-10953245 None:intergenic 25.0%
! ACAGATATGATTCATAACAA+AGG + chr2_2:10953249-10953268 None:intergenic 25.0%
!! AGACTTTTGCATATAGAAAA+AGG + chr2_2:10953748-10953767 None:intergenic 25.0%
! TTGTATATCAGATATTTCGT+TGG - chr2_2:10954165-10954184 Msa0237690:five_prime_UTR 25.0%
! TATTCCATTATAAATGTCCT+CGG + chr2_2:10954340-10954359 None:intergenic 25.0%
TGGCTATTCTAATAACGATA+GGG + chr2_2:10949630-10949649 None:intergenic 30.0%
TTGGCTATTCTAATAACGAT+AGG + chr2_2:10949631-10949650 None:intergenic 30.0%
! TGTGTAAAATAAAGGTTGGT+TGG + chr2_2:10949650-10949669 None:intergenic 30.0%
GAGTTGTGTAAAATAAAGGT+TGG + chr2_2:10949654-10949673 None:intergenic 30.0%
GTGAGAGTTGTGTAAAATAA+AGG + chr2_2:10949658-10949677 None:intergenic 30.0%
ACCAATACAGAGTTGAAAAA+TGG + chr2_2:10949754-10949773 None:intergenic 30.0%
AAGTTAAAAATAAAGGGTGG+TGG - chr2_2:10949962-10949981 Msa0237690:CDS 30.0%
!! TGAAAAAGTTAGTTCTGCTT+TGG + chr2_2:10950046-10950065 None:intergenic 30.0%
AAAAACTTGGGTCATTGTAA+TGG - chr2_2:10950137-10950156 Msa0237690:intron 30.0%
ATCATTCAAGAAAATGTGCA+AGG + chr2_2:10950271-10950290 None:intergenic 30.0%
!! AATCATTCTTGTATTGACTG+AGG - chr2_2:10950370-10950389 Msa0237690:intron 30.0%
GCAAAAATTGTCAAAAACTG+AGG + chr2_2:10950638-10950657 None:intergenic 30.0%
TCATCAGTCAAATTTGAGAA+TGG - chr2_2:10950722-10950741 Msa0237690:intron 30.0%
! ACTTTTTGTTAAGCAGAACA+TGG - chr2_2:10950844-10950863 Msa0237690:intron 30.0%
TTCTGCTAAATTCAGAGTAA+TGG - chr2_2:10950991-10951010 Msa0237690:intron 30.0%
GGTTGAGGATTTACTTAATT+TGG - chr2_2:10951039-10951058 Msa0237690:intron 30.0%
!!! CTTTTTTTCTGAAACAGGAT+TGG - chr2_2:10951427-10951446 Msa0237690:intron 30.0%
GGTACACAAATTCTTACTAT+AGG + chr2_2:10951702-10951721 None:intergenic 30.0%
GATCAAAGTTAAATCTGCAA+GGG + chr2_2:10951760-10951779 None:intergenic 30.0%
AGATCAAAGTTAAATCTGCA+AGG + chr2_2:10951761-10951780 None:intergenic 30.0%
!! CGAATTATTTTGTTTCACGA+AGG - chr2_2:10951913-10951932 Msa0237690:CDS 30.0%
! GCTTTATGTCTCTTATTTGT+AGG + chr2_2:10951977-10951996 None:intergenic 30.0%
! GTTGTATGTTGATTGTTCAA+AGG - chr2_2:10952179-10952198 Msa0237690:intron 30.0%
! ATGTTGATTGTTCAAAGGTA+TGG - chr2_2:10952184-10952203 Msa0237690:intron 30.0%
! TTTCACATCTGTTTGAAGTA+AGG + chr2_2:10952227-10952246 None:intergenic 30.0%
TACTTCAAACAGATGTGAAA+TGG - chr2_2:10952227-10952246 Msa0237690:CDS 30.0%
TATATCTGATGCTCATTACA+AGG - chr2_2:10952431-10952450 Msa0237690:CDS 30.0%
ATCATAACACGTGAAACAAA+AGG + chr2_2:10952533-10952552 None:intergenic 30.0%
! TTCTTTTATGAATCTTGCAG+TGG - chr2_2:10952760-10952779 Msa0237690:intron 30.0%
! TCTTTTATGAATCTTGCAGT+GGG - chr2_2:10952761-10952780 Msa0237690:intron 30.0%
GGTTAAATGAAATTACCTCA+AGG + chr2_2:10952851-10952870 None:intergenic 30.0%
!! TATAGTACCTCAATTGGTTT+TGG + chr2_2:10953102-10953121 None:intergenic 30.0%
AAGCATTATAGTACCTCAAT+TGG + chr2_2:10953108-10953127 None:intergenic 30.0%
!!! TTTTGGTTTTAACCTTGACA+GGG - chr2_2:10953174-10953193 Msa0237690:intron 30.0%
! AGGATTTGAGGTAATAAAGA+AGG - chr2_2:10953356-10953375 Msa0237690:intron 30.0%
AAGAGTAGGTATTCAAAGTT+TGG + chr2_2:10953504-10953523 None:intergenic 30.0%
TTACTGTGTTTAACAAGAGT+AGG + chr2_2:10953518-10953537 None:intergenic 30.0%
ATACCAGAAAACTAATTCCA+AGG - chr2_2:10953682-10953701 Msa0237690:intron 30.0%
TATATGCAAAAGTCTACAAG+TGG - chr2_2:10953753-10953772 Msa0237690:intron 30.0%
AGATATTGTTTGGACAAATG+AGG - chr2_2:10954104-10954123 Msa0237690:intron 30.0%
!! GAGTGGATGAAGTTTGTTTT+TGG + chr2_2:10949598-10949617 None:intergenic 35.0%
GGCTATTCTAATAACGATAG+GGG + chr2_2:10949629-10949648 None:intergenic 35.0%
! AAGCTGCAAACTTTGGAAAT+GGG + chr2_2:10949727-10949746 None:intergenic 35.0%
! AAAGCTGCAAACTTTGGAAA+TGG + chr2_2:10949728-10949747 None:intergenic 35.0%
!!! GCCATTTTTCAACTCTGTAT+TGG - chr2_2:10949750-10949769 Msa0237690:three_prime_UTR 35.0%
!! TAAAGGGTGGTGGTTATTTT+TGG - chr2_2:10949972-10949991 Msa0237690:CDS 35.0%
AATGTGCATCTTATTGAGTG+TGG - chr2_2:10950339-10950358 Msa0237690:intron 35.0%
TCAAATTTGAGAATGGTTGC+TGG - chr2_2:10950729-10950748 Msa0237690:intron 35.0%
CTTGTCTGACATTGTATAGA+AGG + chr2_2:10950884-10950903 None:intergenic 35.0%
ATCAAAGATGTGGAGTTCTT+TGG - chr2_2:10950940-10950959 Msa0237690:intron 35.0%
!! ACACCTTCAAGTTGAATTGT+CGG + chr2_2:10951211-10951230 None:intergenic 35.0%
ACTAGCACATACACAAATAC+TGG + chr2_2:10951360-10951379 None:intergenic 35.0%
!!! TTTTTCTGAAACAGGATTGG+TGG - chr2_2:10951430-10951449 Msa0237690:CDS 35.0%
! GGATCTTTGAAAATTGCTTG+AGG + chr2_2:10951800-10951819 None:intergenic 35.0%
! ATTTTCAAAGATCCTTTCCG+CGG - chr2_2:10951806-10951825 Msa0237690:intron 35.0%
!! GGTAACAACATTTTGGTAAG+TGG - chr2_2:10951830-10951849 Msa0237690:intron 35.0%
! TGTCTCTTATTTGTAGGGAT+AGG + chr2_2:10951971-10951990 None:intergenic 35.0%
TGAAATCTTCAGTAACCCAA+AGG - chr2_2:10952000-10952019 Msa0237690:intron 35.0%
! AAGGAGTACAATACATACCA+CGG + chr2_2:10952040-10952059 None:intergenic 35.0%
CGAAGCTAGAAAATGAAACT+AGG - chr2_2:10952090-10952109 Msa0237690:CDS 35.0%
ACAAGAAATGGTATTACCTG+AGG + chr2_2:10952286-10952305 None:intergenic 35.0%
AGGACCCTGATATAATATGA+AGG + chr2_2:10952370-10952389 None:intergenic 35.0%
TATGCTGGAATTAACATCAG+TGG - chr2_2:10952462-10952481 Msa0237690:intron 35.0%
ATTAACATCAGTGGTACCAA+TGG - chr2_2:10952471-10952490 Msa0237690:intron 35.0%
GGTACAACAAGAAATTTACC+TGG + chr2_2:10952512-10952531 None:intergenic 35.0%
! CTTAATTCTGTGTAGGCTTT+TGG - chr2_2:10952964-10952983 Msa0237690:CDS 35.0%
!!! GTAGGCTTTTGGTTCAATAA+TGG - chr2_2:10952975-10952994 Msa0237690:CDS 35.0%
TTGTTCAGTAATTCTCTGTC+AGG + chr2_2:10953055-10953074 None:intergenic 35.0%
!!! CTCAATTGGTTTTGGATCAA+GGG + chr2_2:10953094-10953113 None:intergenic 35.0%
!!! GTTTTGGTTTTAACCTTGAC+AGG - chr2_2:10953173-10953192 Msa0237690:intron 35.0%
!! TTTTCAGTACAAAGAGCATG+AGG - chr2_2:10953325-10953344 Msa0237690:intron 35.0%
! TTTCAGTACAAAGAGCATGA+GGG - chr2_2:10953326-10953345 Msa0237690:intron 35.0%
AAGGTTCACATTGAAGCATA+TGG - chr2_2:10953405-10953424 Msa0237690:intron 35.0%
! CAGCATCAACACATTTTCTT+GGG - chr2_2:10953470-10953489 Msa0237690:intron 35.0%
AAAATTGAATATGCAGGGAG+TGG - chr2_2:10953585-10953604 Msa0237690:intron 35.0%
GAAAATTTGAGCGCTAAAAG+CGG + chr2_2:10953708-10953727 None:intergenic 35.0%
TGCAATCAAGACATTAGGAA+AGG + chr2_2:10953855-10953874 None:intergenic 35.0%
TTTCCTAATGTCTTGATTGC+AGG - chr2_2:10953854-10953873 Msa0237690:intron 35.0%
TAACCTGCAATCAAGACATT+AGG + chr2_2:10953860-10953879 None:intergenic 35.0%
TTCAAACATGGATCCATATG+TGG - chr2_2:10953901-10953920 Msa0237690:intron 35.0%
TAATGTACTCTCTGCCAATA+AGG + chr2_2:10953933-10953952 None:intergenic 35.0%
TCATCTCATAACCAATGACT+AGG + chr2_2:10954138-10954157 None:intergenic 35.0%
TTGAATAGCTTCTCTTTCTG+AGG + chr2_2:10954310-10954329 None:intergenic 35.0%
! AGCTATTCAAATTTTCACCG+AGG - chr2_2:10954320-10954339 Msa0237690:five_prime_UTR 35.0%
TTCACCGAGGACATTTATAA+TGG - chr2_2:10954333-10954352 Msa0237690:five_prime_UTR 35.0%
TTACAAGTCCAAGCTTCTCT+TGG - chr2_2:10949558-10949577 Msa0237690:three_prime_UTR 40.0%
!! CTTCTCTTGGTGCTCTTTAA+GGG - chr2_2:10949571-10949590 Msa0237690:three_prime_UTR 40.0%
CACAACTCTCACACTCTATA+TGG - chr2_2:10949666-10949685 Msa0237690:three_prime_UTR 40.0%
! TGAAAATGAGCCTTGTGTCA+CGG + chr2_2:10949694-10949713 None:intergenic 40.0%
TGGCAAAAAGCTGCAAACTT+TGG + chr2_2:10949734-10949753 None:intergenic 40.0%
CTCCACATCTTTGATGAGAT+CGG + chr2_2:10950935-10950954 None:intergenic 40.0%
AGAGTAATGGCAATCAACTC+TGG - chr2_2:10951004-10951023 Msa0237690:intron 40.0%
TAAATCCTCAACCCTGTTGA+TGG + chr2_2:10951032-10951051 None:intergenic 40.0%
GCAATTATGCTGTCAGTGAA+TGG + chr2_2:10951073-10951092 None:intergenic 40.0%
GCATAATTGCTGAGTACATC+TGG - chr2_2:10951083-10951102 Msa0237690:CDS 40.0%
! ATGCTCAACAGGCTTTGATA+TGG + chr2_2:10951605-10951624 None:intergenic 40.0%
CTTCCTAAGTGGAACTATGA+CGG - chr2_2:10951634-10951653 Msa0237690:CDS 40.0%
TCACTTCACTATCTTCACCA+GGG + chr2_2:10951678-10951697 None:intergenic 40.0%
ATCACTTCACTATCTTCACC+AGG + chr2_2:10951679-10951698 None:intergenic 40.0%
TGAAAATTGCTTGAGGACTG+TGG + chr2_2:10951793-10951812 None:intergenic 40.0%
GAATTTCAGCCTCAACCTTT+GGG + chr2_2:10952018-10952037 None:intergenic 40.0%
TAGCTTCGAACAACAGTAGT+TGG + chr2_2:10952078-10952097 None:intergenic 40.0%
ACAGATGTGAAATGGCCATT+AGG - chr2_2:10952235-10952254 Msa0237690:CDS 40.0%
ATGTGAAATGGCCATTAGGT+TGG - chr2_2:10952239-10952258 Msa0237690:CDS 40.0%
! TACAAGGCTTGCTTATATGC+TGG - chr2_2:10952447-10952466 Msa0237690:CDS 40.0%
AACAAGAAATTTACCTGGCC+AGG + chr2_2:10952507-10952526 None:intergenic 40.0%
CATGACATAAGCACAAGTGT+CGG - chr2_2:10952620-10952639 Msa0237690:intron 40.0%
!! TGAAGACTTCGGTGCTATAT+AGG - chr2_2:10952706-10952725 Msa0237690:intron 40.0%
!! TATCAAGTTGGTCCTAGTGT+AGG - chr2_2:10952786-10952805 Msa0237690:intron 40.0%
TTGAAGCTGGTGATCATATC+TGG - chr2_2:10952811-10952830 Msa0237690:CDS 40.0%
TGAAGCTGGTGATCATATCT+GGG - chr2_2:10952812-10952831 Msa0237690:CDS 40.0%
CAGAGAATTACTGAACAAGC+TGG - chr2_2:10953057-10953076 Msa0237690:intron 40.0%
!!! CCTCAATTGGTTTTGGATCA+AGG + chr2_2:10953095-10953114 None:intergenic 40.0%
CCTTGATCCAAAACCAATTG+AGG - chr2_2:10953092-10953111 Msa0237690:intron 40.0%
TTTAACCTTGACAGGGTGAT+TGG - chr2_2:10953181-10953200 Msa0237690:intron 40.0%
ATGCTTCAATGTGAACCTTG+TGG + chr2_2:10953404-10953423 None:intergenic 40.0%
CACATTGAAGCATATGGAGA+AGG - chr2_2:10953411-10953430 Msa0237690:intron 40.0%
ATGGAGAAGGAAATGAGAGA+AGG - chr2_2:10953424-10953443 Msa0237690:intron 40.0%
! CCAAGAAAATGTGTTGATGC+TGG + chr2_2:10953472-10953491 None:intergenic 40.0%
! CCAGCATCAACACATTTTCT+TGG - chr2_2:10953469-10953488 Msa0237690:intron 40.0%
AGGGTTCAAAATTCGAACTC+TGG + chr2_2:10953792-10953811 None:intergenic 40.0%
TGTCTTGATTGCAGGTTACT+TGG - chr2_2:10953862-10953881 Msa0237690:intron 40.0%
! TATGGATCCATGTTTGAAGC+CGG + chr2_2:10953899-10953918 None:intergenic 40.0%
AATAAGGCTGTCACCACATA+TGG + chr2_2:10953917-10953936 None:intergenic 40.0%
! ATATGTGGTGACAGCCTTAT+TGG - chr2_2:10953916-10953935 Msa0237690:intron 40.0%
! TGGCAGAGAGTACATTATTG+TGG - chr2_2:10953936-10953955 Msa0237690:intron 40.0%
! GGCAGAGAGTACATTATTGT+GGG - chr2_2:10953937-10953956 Msa0237690:intron 40.0%
TCATAACCAATGACTAGGCA+TGG + chr2_2:10954133-10954152 None:intergenic 40.0%
!! AAAGAGCACCAAGAGAAGCT+TGG + chr2_2:10949569-10949588 None:intergenic 45.0%
!! GCTTCTCTTGGTGCTCTTTA+AGG - chr2_2:10949570-10949589 Msa0237690:three_prime_UTR 45.0%
CTATATGGTTCCGTGACACA+AGG - chr2_2:10949681-10949700 Msa0237690:three_prime_UTR 45.0%
! GCAGAACATGGCACAGATTT+TGG - chr2_2:10950856-10950875 Msa0237690:intron 45.0%
TGATGAGATCGGAGTTGCAA+GGG + chr2_2:10950924-10950943 None:intergenic 45.0%
TTGATGAGATCGGAGTTGCA+AGG + chr2_2:10950925-10950944 None:intergenic 45.0%
CTCCGATCTCATCAAAGATG+TGG - chr2_2:10950930-10950949 Msa0237690:intron 45.0%
GGACCGACAATTCAACTTGA+AGG - chr2_2:10951205-10951224 Msa0237690:intron 45.0%
! TGAAACAGGATTGGTGGAAC+AGG - chr2_2:10951436-10951455 Msa0237690:CDS 45.0%
TTCCACTTAGGAAGCTCAGA+GGG + chr2_2:10951628-10951647 None:intergenic 45.0%
GATCCGTCATAGTTCCACTT+AGG + chr2_2:10951640-10951659 None:intergenic 45.0%
!! AACTATGACGGATCTAGCAC+TGG - chr2_2:10951646-10951665 Msa0237690:CDS 45.0%
CACTTCACTATCTTCACCAG+GGG + chr2_2:10951677-10951696 None:intergenic 45.0%
AAATTGCTTGAGGACTGTGG+AGG + chr2_2:10951790-10951809 None:intergenic 45.0%
CCAAAATGTTGTTACCACCG+CGG + chr2_2:10951826-10951845 None:intergenic 45.0%
TGCGATGCTTATACACCACA+AGG - chr2_2:10951941-10951960 Msa0237690:CDS 45.0%
CTTCAGTAACCCAAAGGTTG+AGG - chr2_2:10952006-10952025 Msa0237690:intron 45.0%
GGAATTTCAGCCTCAACCTT+TGG + chr2_2:10952019-10952038 None:intergenic 45.0%
AATGGTATTACCTGAGGACC+AGG + chr2_2:10952280-10952299 None:intergenic 45.0%
ACCAAATGACTTATCTGCCC+CGG + chr2_2:10952406-10952425 None:intergenic 45.0%
ACATGTGTCAATGCCCAACA+CGG + chr2_2:10952654-10952673 None:intergenic 45.0%
!! TGTTGGGCATTGACACATGT+TGG - chr2_2:10952654-10952673 Msa0237690:intron 45.0%
!! TTCACAATGAAGGCGTCTCT+CGG + chr2_2:10952690-10952709 None:intergenic 45.0%
CGCCTTCATTGTGAAGACTT+CGG - chr2_2:10952695-10952714 Msa0237690:intron 45.0%
CACCGAAGTCTTCACAATGA+AGG + chr2_2:10952700-10952719 None:intergenic 45.0%
!! TTGCAGTGGGAGTATCAAGT+TGG - chr2_2:10952774-10952793 Msa0237690:intron 45.0%
CCAGCTTCAATACCTACACT+AGG + chr2_2:10952801-10952820 None:intergenic 45.0%
!! CCTAGTGTAGGTATTGAAGC+TGG - chr2_2:10952798-10952817 Msa0237690:intron 45.0%
GTGATCATATCTGGGCTTCA+AGG - chr2_2:10952820-10952839 Msa0237690:CDS 45.0%
CAGGATGTCACACCAATTAC+AGG - chr2_2:10953211-10953230 Msa0237690:intron 45.0%
! ACAAAGAGCATGAGGGAAGA+TGG - chr2_2:10953333-10953352 Msa0237690:intron 45.0%
AATGTGAACCTTGTGGCGAA+GGG + chr2_2:10953397-10953416 None:intergenic 45.0%
GGAAATGAGAGAAGGTTGAC+AGG - chr2_2:10953432-10953451 Msa0237690:intron 45.0%
CTCACCTTTGCCATTCTTCT+CGG + chr2_2:10953647-10953666 None:intergenic 45.0%
!!! CGGCCTTGGAATTAGTTTTC+TGG + chr2_2:10953688-10953707 None:intergenic 45.0%
TTGCAGGTTACTTGGAAGAC+AGG - chr2_2:10953870-10953889 Msa0237690:intron 45.0%
ATTGTGGGAACCAACTCTAG+AGG - chr2_2:10953952-10953971 Msa0237690:intron 45.0%
!!! TTTTTTTAAGTTAAAAATAA+AGG - chr2_2:10949955-10949974 Msa0237690:CDS 5.0%
!!! TTTTTTAAGTTAAAAATAAA+GGG - chr2_2:10949956-10949975 Msa0237690:CDS 5.0%
GATGAGATCGGAGTTGCAAG+GGG + chr2_2:10950923-10950942 None:intergenic 50.0%
TCAACTCTGGCACCATCAAC+AGG - chr2_2:10951017-10951036 Msa0237690:intron 50.0%
CAACTCTGGCACCATCAACA+GGG - chr2_2:10951018-10951037 Msa0237690:intron 50.0%
ATCCCTCTGAGCTTCCTAAG+TGG - chr2_2:10951623-10951642 Msa0237690:intron 50.0%
GTTCCACTTAGGAAGCTCAG+AGG + chr2_2:10951629-10951648 None:intergenic 50.0%
TTCAAAGATCCTTTCCGCGG+TGG - chr2_2:10951809-10951828 Msa0237690:intron 50.0%
ATGTTGTTACCACCGCGGAA+AGG + chr2_2:10951821-10951840 None:intergenic 50.0%
! CCGCGGTGGTAACAACATTT+TGG - chr2_2:10951823-10951842 Msa0237690:intron 50.0%
AGGTTGAGGCTGAAATTCCG+TGG - chr2_2:10952020-10952039 Msa0237690:intron 50.0%
AAATGACTTATCTGCCCCGG+CGG + chr2_2:10952403-10952422 None:intergenic 50.0%
CATCAGTGGTACCAATGGAG+AGG - chr2_2:10952476-10952495 Msa0237690:intron 50.0%
ACCAATGGAGAGGTTATGCC+TGG - chr2_2:10952486-10952505 Msa0237690:intron 50.0%
GGCTTCAAGGTACATCCTTG+AGG - chr2_2:10952833-10952852 Msa0237690:CDS 50.0%
CCATTCCAATCACCCTGTCA+AGG + chr2_2:10953189-10953208 None:intergenic 50.0%
CCTTGACAGGGTGATTGGAA+TGG - chr2_2:10953186-10953205 Msa0237690:intron 50.0%
! AAGAGCATGAGGGAAGATGG+AGG - chr2_2:10953336-10953355 Msa0237690:intron 50.0%
GAGGGAAGATGGAGGATTTG+AGG - chr2_2:10953344-10953363 Msa0237690:intron 50.0%
CAATGTGAACCTTGTGGCGA+AGG + chr2_2:10953398-10953417 None:intergenic 50.0%
GGAAGAGACACCGAGAAGAA+TGG - chr2_2:10953634-10953653 Msa0237690:intron 50.0%
GACACCGAGAAGAATGGCAA+AGG - chr2_2:10953640-10953659 Msa0237690:intron 50.0%
TTACTTGGAAGACAGGCGTC+CGG - chr2_2:10953877-10953896 Msa0237690:intron 50.0%
!! AGAGCTTCAGCCTCTAGAGT+TGG + chr2_2:10953965-10953984 None:intergenic 50.0%
! TCGTTGGCTGTGTTTGCATG+TGG - chr2_2:10954181-10954200 Msa0237690:five_prime_UTR 50.0%
GGCTGTGTTTGCATGTGGTA+TGG - chr2_2:10954186-10954205 Msa0237690:five_prime_UTR 50.0%
! CGATAGGGGTGTGCTTTGAG+TGG + chr2_2:10949615-10949634 None:intergenic 55.0%
TGGCACCATCAACAGGGTTG+AGG - chr2_2:10951024-10951043 Msa0237690:intron 55.0%
AGCTCAGAGGGATGCTCAAC+AGG + chr2_2:10951616-10951635 None:intergenic 55.0%
GTAGGGATAGGCTCACCTTG+TGG + chr2_2:10951959-10951978 None:intergenic 55.0%
!! TGGCCATTAGGTTGGCCTGT+TGG - chr2_2:10952247-10952266 Msa0237690:CDS 55.0%
CCACCAACAGGCCAACCTAA+TGG + chr2_2:10952253-10952272 None:intergenic 55.0%
!! CCATTAGGTTGGCCTGTTGG+TGG - chr2_2:10952250-10952269 Msa0237690:CDS 55.0%
GCCGGGGCAGATAAGTCATT+TGG - chr2_2:10952402-10952421 Msa0237690:intron 55.0%
GCCAGGCATAACCTCTCCAT+TGG + chr2_2:10952490-10952509 None:intergenic 55.0%
!! TGTCGGTTTCGTGTCCGTGT+TGG - chr2_2:10952637-10952656 Msa0237690:intron 55.0%
! GTCGGTTTCGTGTCCGTGTT+GGG - chr2_2:10952638-10952657 Msa0237690:intron 55.0%
CAGGGTGATTGGAATGGTGC+AGG - chr2_2:10953192-10953211 Msa0237690:intron 55.0%
GAACCTTTCCCTTCGCCACA+AGG - chr2_2:10953386-10953405 Msa0237690:intron 55.0%
GAACCTTGTGGCGAAGGGAA+AGG + chr2_2:10953392-10953411 None:intergenic 55.0%
! CCACACGGATTGAGCATCCA+CGG + chr2_2:10953615-10953634 None:intergenic 55.0%
CGTGGATGCTCAATCCGTGT+GGG - chr2_2:10953613-10953632 Msa0237690:intron 55.0%
!! TCTCGGTGTCTCTTCCCACA+CGG + chr2_2:10953630-10953649 None:intergenic 55.0%
TTGAGCGCTAAAAGCGGCCT+TGG + chr2_2:10953702-10953721 None:intergenic 55.0%
CAGCACTGCTGCAGTTTGTG+AGG - chr2_2:10954035-10954054 Msa0237690:intron 55.0%
TGCTGCAGTTTGTGAGGTGC+TGG - chr2_2:10954041-10954060 Msa0237690:intron 55.0%
! GCTGCAGTTTGTGAGGTGCT+GGG - chr2_2:10954042-10954061 Msa0237690:intron 55.0%
AGGCTGCCATGCCTAGTCAT+TGG - chr2_2:10954124-10954143 Msa0237690:intron 55.0%
! TCTAGCACTGGACAAGCCCC+TGG - chr2_2:10951658-10951677 Msa0237690:CDS 60.0%
!! TGGCCTGTTGGTGGCTATCC+TGG - chr2_2:10952259-10952278 Msa0237690:CDS 60.0%
GGACCAGGATAGCCACCAAC+AGG + chr2_2:10952265-10952284 None:intergenic 60.0%
TGGTGGCTATCCTGGTCCTC+AGG - chr2_2:10952267-10952286 Msa0237690:CDS 60.0%
GGTCCTTATTACTGCGCCGC+CGG - chr2_2:10952384-10952403 Msa0237690:intron 60.0%
GTCCTTATTACTGCGCCGCC+GGG - chr2_2:10952385-10952404 Msa0237690:intron 60.0%
TCCTTATTACTGCGCCGCCG+GGG - chr2_2:10952386-10952405 Msa0237690:intron 60.0%
TGGAGAGGTTATGCCTGGCC+AGG - chr2_2:10952491-10952510 Msa0237690:intron 60.0%
ATGCAGGGAGTGGCTAACCG+TGG - chr2_2:10953595-10953614 Msa0237690:intron 60.0%
CCGTGGATGCTCAATCCGTG+TGG - chr2_2:10953612-10953631 Msa0237690:intron 60.0%
CAGGCGTCCGGCTTCAAACA+TGG - chr2_2:10953889-10953908 Msa0237690:intron 60.0%
GCCCCGGCGGCGCAGTAATA+AGG + chr2_2:10952390-10952409 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 10949528 10954384 10949528 ID=Msa0237690;Name=Msa0237690
chr2_2 mRNA 10949528 10954384 10949528 ID=Msa0237690-mRNA-1;Parent=Msa0237690;Name=Msa0237690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=247|0.92|0.85|1|0.92|0.85|14|369|409
chr2_2 exon 10949528 10950036 10949528 ID=Msa0237690-mRNA-1:exon:4782;Parent=Msa0237690-mRNA-1
chr2_2 exon 10950251 10950311 10950251 ID=Msa0237690-mRNA-1:exon:4781;Parent=Msa0237690-mRNA-1
chr2_2 exon 10950421 10950580 10950421 ID=Msa0237690-mRNA-1:exon:4780;Parent=Msa0237690-mRNA-1
chr2_2 exon 10950680 10950717 10950680 ID=Msa0237690-mRNA-1:exon:4779;Parent=Msa0237690-mRNA-1
chr2_2 exon 10950799 10950852 10950799 ID=Msa0237690-mRNA-1:exon:4778;Parent=Msa0237690-mRNA-1
chr2_2 exon 10951058 10951104 10951058 ID=Msa0237690-mRNA-1:exon:4777;Parent=Msa0237690-mRNA-1
chr2_2 exon 10951429 10951528 10951429 ID=Msa0237690-mRNA-1:exon:4776;Parent=Msa0237690-mRNA-1
chr2_2 exon 10951624 10951711 10951624 ID=Msa0237690-mRNA-1:exon:4775;Parent=Msa0237690-mRNA-1
chr2_2 exon 10951871 10951977 10951871 ID=Msa0237690-mRNA-1:exon:4774;Parent=Msa0237690-mRNA-1
chr2_2 exon 10952068 10952116 10952068 ID=Msa0237690-mRNA-1:exon:4773;Parent=Msa0237690-mRNA-1
chr2_2 exon 10952208 10952311 10952208 ID=Msa0237690-mRNA-1:exon:4772;Parent=Msa0237690-mRNA-1
chr2_2 exon 10952429 10952468 10952429 ID=Msa0237690-mRNA-1:exon:4771;Parent=Msa0237690-mRNA-1
chr2_2 exon 10952808 10953052 10952808 ID=Msa0237690-mRNA-1:exon:4770;Parent=Msa0237690-mRNA-1
chr2_2 exon 10954141 10954384 10954141 ID=Msa0237690-mRNA-1:exon:4769;Parent=Msa0237690-mRNA-1
chr2_2 five_prime_UTR 10954141 10954384 10954141 ID=Msa0237690-mRNA-1:five_prime_utr;Parent=Msa0237690-mRNA-1
chr2_2 five_prime_UTR 10953050 10953052 10953050 ID=Msa0237690-mRNA-1:five_prime_utr;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10952808 10953049 10952808 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10952429 10952468 10952429 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10952208 10952311 10952208 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10952068 10952116 10952068 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10951871 10951977 10951871 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10951624 10951711 10951624 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10951429 10951528 10951429 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10951058 10951104 10951058 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10950799 10950852 10950799 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10950680 10950717 10950680 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10950421 10950580 10950421 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10950251 10950311 10950251 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 CDS 10949897 10950036 10949897 ID=Msa0237690-mRNA-1:cds;Parent=Msa0237690-mRNA-1
chr2_2 three_prime_UTR 10949528 10949896 10949528 ID=Msa0237690-mRNA-1:three_prime_utr;Parent=Msa0237690-mRNA-1
Gene Sequence

>Msa0237690

ATGGCACAGATTTTGGCTCCTTCTATACAATGTCAGACAAGAATCACAAAAACATCTCCCCTTGCAACTCCGATCTCATCAAAGATGTGGAGTTCTTTGGTTATGAAACAAAACAAGAAAGTTGCACGTTCTGCTAAATTCAGAGTAATGGCAATCAACTCTGGCACCATCAACAGGGTTGAGGATTTACTTAATTTGGACATCACTCCATTCACTGACAGCATAATTGCTGAGTACATCTGGATTGGTGGAACAGGAATCGATGTGCGCAGTAAATCAAGAACCATATCAAAGCCTGTTGAGCATCCCTCTGAGCTTCCTAAGTGGAACTATGACGGATCTAGCACTGGACAAGCCCCTGGTGAAGATAGTGAAGTGATCCTATATCCTCAAGCAATTTTCAAAGATCCTTTCCGCGGTGGTAACAACATTTTGGTCATTTGCGATGCTTATACACCACAAGGTGAGCCTATCCCTACAAATAAGAGACATAAAGCTGCTGAAATCTTCAGTAACCCAAAGGTTGAGGCTGAAATTCCGTGGTATGGAATCGAACAAGAGTACACCTTACTTCAAACAGATGTGAAATGGCCATTAGGTTGGCCTGTTGGTGGCTATCCTGGTCCTCAGGGTCCTTATTACTGCGCCGCCGGGGCAGATAAGTCATTTGGTCGTGATATATCTGATGCTCATTACAAGGCTTGCTTATATGCTGGAATTAACATCAGTGGTATTGAAGCTGGTGATCATATCTGGGCTTCAAGGTACATCCTTGAGAGAATTACTGAACAAGCTGGTGTTGTGCTCACCCTTGATCCAAAACCAATTGAGGGTGATTGGAATGGTGCAGGATGTCACACCAATTACAGTACAAAGAGCATGAGGGAAGATGGAGGATTTGAGGTAATAAAGAAGGCAATTTTGAACCTTTCCCTTCGCCACAAGGTTCACATTGAAGCATATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAGACTGCCAGCATCAACACATTTTCTTGGGGAGTGGCTAACCGTGGATGCTCAATCCGTGTGGGAAGAGACACCGAGAAGAATGGCAAAGGTTACTTGGAAGACAGGCGTCCGGCTTCAAACATGGATCCATATGTGGTGACAGCCTTATTGGCAGAGAGTACATTATTGTGGGAACCAACTCTAGAGGCTGAAGCTCTTGCAGCTCAGAAGATTGCATTGAAAGTCTAA

Protein sequence

>Msa0237690

MAQILAPSIQCQTRITKTSPLATPISSKMWSSLVMKQNKKVARSAKFRVMAINSGTINRVEDLLNLDITPFTDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPTLEAEALAAQKIALKV*