Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505080 | XP_013460339.2 | 92.208 | 154 | 12 | 0 | 1 | 154 | 1 | 154 | 1.04e-97 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505080 | sp|Q9FJK3|AGL80_ARATH | 51.656 | 151 | 68 | 3 | 1 | 149 | 1 | 148 | 8.93e-37 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505080 | A0A072UL53 | 91.275 | 149 | 13 | 0 | 1 | 149 | 1 | 149 | 1.07e-92 | 277 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0505080 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0153910 | Msa0505080 | 0.805771 | 1.136229e-49 | -8.615850e-47 |
| Msa0232850 | Msa0505080 | 0.812196 | 4.788200e-51 | -8.615850e-47 |
| Msa0365500 | Msa0505080 | 0.907312 | 5.809000e-81 | -8.615850e-47 |
| Msa0384890 | Msa0505080 | 0.807306 | 5.390173e-50 | -8.615850e-47 |
| Msa0394970 | Msa0505080 | 0.804145 | 2.485641e-49 | -8.615850e-47 |
| Msa0414410 | Msa0505080 | 0.814827 | 1.263736e-51 | -8.615850e-47 |
| Msa0414420 | Msa0505080 | 0.815200 | 1.044472e-51 | -8.615850e-47 |
| Msa0436780 | Msa0505080 | 0.802747 | 4.843645e-49 | -8.615850e-47 |
| Msa0452900 | Msa0505080 | 0.825185 | 5.381397e-54 | -8.615850e-47 |
| Msa0458450 | Msa0505080 | 0.888730 | 4.557062e-73 | -8.615850e-47 |
| Msa0267000 | Msa0505080 | 0.801014 | 1.099286e-48 | -8.615850e-47 |
| Msa0267010 | Msa0505080 | 0.806655 | 7.401792e-50 | -8.615850e-47 |
| Msa0360510 | Msa0505080 | 0.807344 | 5.293008e-50 | -8.615850e-47 |
| Msa0491590 | Msa0505080 | 0.800359 | 1.495588e-48 | -8.615850e-47 |
| Msa0505080 | Msa0564890 | 0.807343 | 5.294200e-50 | -8.615850e-47 |
| Msa0505080 | Msa0694370 | 0.824939 | 6.149425e-54 | -8.615850e-47 |
| Msa0505080 | Msa0726140 | 0.812228 | 4.712777e-51 | -8.615850e-47 |
| Msa0505080 | Msa0745060 | 0.822921 | 1.829132e-53 | -8.615850e-47 |
| Msa0505080 | Msa0767720 | 0.809228 | 2.098440e-50 | -8.615850e-47 |
| Msa0505080 | Msa0783160 | 0.844054 | 9.586815e-59 | -8.615850e-47 |
| Msa0505080 | Msa0784290 | 0.813357 | 2.666894e-51 | -8.615850e-47 |
| Msa0505080 | Msa0808010 | 0.818675 | 1.731794e-52 | -8.615850e-47 |
| Msa0505080 | Msa0808020 | 0.808904 | 2.462055e-50 | -8.615850e-47 |
| Msa0505080 | Msa0825860 | 0.817074 | 3.981246e-52 | -8.615850e-47 |
| Msa0505080 | Msa0833290 | 0.800055 | 1.724479e-48 | -8.615850e-47 |
| Msa0505080 | Msa0846210 | 0.809206 | 2.121792e-50 | -8.615850e-47 |
| Msa0505080 | Msa0958550 | 0.801274 | 9.728953e-49 | -8.615850e-47 |
| Msa0505080 | Msa1014540 | 0.811121 | 8.201768e-51 | -8.615850e-47 |
| Msa0505080 | Msa1016280 | 0.813795 | 2.136213e-51 | -8.615850e-47 |
| Msa0505080 | Msa1025360 | 0.816266 | 6.043341e-52 | -8.615850e-47 |
| Msa0505080 | Msa1025370 | 0.803132 | 4.033181e-49 | -8.615850e-47 |
| Msa0505080 | Msa1044830 | 0.804696 | 1.908226e-49 | -8.615850e-47 |
| Msa0505080 | Msa1044840 | 0.817294 | 3.553549e-52 | -8.615850e-47 |
| Msa0505080 | Msa1092990 | 0.847267 | 1.288736e-59 | -8.615850e-47 |
| Msa0505080 | Msa1100980 | 0.823351 | 1.451798e-53 | -8.615850e-47 |
| Msa0505080 | Msa1109440 | 0.802697 | 4.960245e-49 | -8.615850e-47 |
| Msa0505080 | Msa1135740 | 0.801981 | 6.968000e-49 | -8.615850e-47 |
| Msa0505080 | Msa1184420 | 0.801832 | 7.474937e-49 | -8.615850e-47 |
| Msa0505080 | Msa1187940 | 0.808629 | 2.819573e-50 | -8.615850e-47 |
| Msa0505080 | Msa1192640 | 0.814074 | 1.854034e-51 | -8.615850e-47 |
| Msa0505080 | Msa1269670 | 0.820641 | 6.160232e-53 | -8.615850e-47 |
| Msa0505080 | Msa1270230 | 0.818961 | 1.491021e-52 | -8.615850e-47 |
| Msa0505080 | Msa1270240 | 0.810218 | 1.285621e-50 | -8.615850e-47 |
| Msa0505080 | Msa1285930 | 0.838489 | 2.790030e-57 | -8.615850e-47 |
| Msa0505080 | Msa1287800 | 0.808749 | 2.657967e-50 | -8.615850e-47 |
| Msa0505080 | Msa1287810 | 0.814796 | 1.283758e-51 | -8.615850e-47 |
| Msa0505080 | Msa1307890 | 0.814735 | 1.324416e-51 | -8.615850e-47 |
| Msa0505080 | Msa1369430 | 0.801767 | 7.707544e-49 | -8.615850e-47 |
| Msa0505080 | Msa1404000 | 0.823616 | 1.258187e-53 | -8.615850e-47 |
| Msa0505080 | Msa1422180 | 0.810992 | 8.747635e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505080 | MtrunA17_Chr3g0107461 | 80.537 | 149 | 29 | 0 | 1 | 149 | 1 | 149 | 2.43e-84 | 246 |
| Msa0505080 | MtrunA17_Chr3g0105791 | 92.857 | 126 | 9 | 0 | 29 | 154 | 1 | 126 | 3.24e-82 | 240 |
| Msa0505080 | MtrunA17_Chr4g0031421 | 91.736 | 121 | 10 | 0 | 29 | 149 | 1 | 121 | 4.43e-77 | 228 |
| Msa0505080 | MtrunA17_Chr3g0107381 | 53.333 | 165 | 76 | 1 | 1 | 165 | 1 | 164 | 6.06e-54 | 171 |
| Msa0505080 | MtrunA17_Chr3g0110131 | 53.020 | 149 | 69 | 1 | 1 | 149 | 1 | 148 | 2.59e-42 | 142 |
| Msa0505080 | MtrunA17_Chr2g0283941 | 46.980 | 149 | 79 | 0 | 1 | 149 | 1 | 149 | 3.18e-41 | 139 |
| Msa0505080 | MtrunA17_Chr5g0432691 | 43.421 | 152 | 79 | 2 | 1 | 149 | 1 | 148 | 9.15e-40 | 133 |
| Msa0505080 | MtrunA17_Chr4g0014321 | 41.611 | 149 | 87 | 0 | 1 | 149 | 1 | 149 | 6.54e-38 | 130 |
| Msa0505080 | MtrunA17_Chr8g0351751 | 45.033 | 151 | 81 | 1 | 1 | 149 | 1 | 151 | 7.16e-38 | 131 |
| Msa0505080 | MtrunA17_Chr2g0296861 | 47.651 | 149 | 77 | 1 | 1 | 149 | 1 | 148 | 3.26e-37 | 127 |
| Msa0505080 | MtrunA17_Chr5g0420351 | 42.675 | 157 | 88 | 2 | 1 | 157 | 1 | 155 | 2.28e-35 | 122 |
| Msa0505080 | MtrunA17_Chr3g0106501 | 47.656 | 128 | 67 | 0 | 29 | 156 | 1 | 128 | 2.55e-35 | 122 |
| Msa0505080 | MtrunA17_Chr4g0014031 | 43.949 | 157 | 88 | 0 | 1 | 157 | 1 | 157 | 4.91e-35 | 123 |
| Msa0505080 | MtrunA17_Chr4g0013041 | 39.597 | 149 | 88 | 1 | 1 | 149 | 1 | 147 | 4.32e-32 | 115 |
| Msa0505080 | MtrunA17_Chr2g0296831 | 48.718 | 117 | 60 | 0 | 1 | 117 | 1 | 117 | 6.07e-32 | 112 |
| Msa0505080 | MtrunA17_Chr3g0107331 | 40.816 | 147 | 86 | 1 | 3 | 149 | 2 | 147 | 8.56e-32 | 113 |
| Msa0505080 | MtrunA17_Chr1g0188681 | 42.953 | 149 | 83 | 2 | 1 | 149 | 1 | 147 | 9.30e-32 | 113 |
| Msa0505080 | MtrunA17_Chr4g0014131 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 4.77e-31 | 113 |
| Msa0505080 | MtrunA17_Chr1g0197461 | 38.776 | 147 | 88 | 2 | 3 | 149 | 2 | 146 | 3.20e-29 | 106 |
| Msa0505080 | MtrunA17_Chr4g0014121 | 40.940 | 149 | 88 | 0 | 1 | 149 | 29 | 177 | 3.21e-29 | 107 |
| Msa0505080 | MtrunA17_Chr3g0107361 | 39.456 | 147 | 88 | 1 | 3 | 149 | 2 | 147 | 1.62e-28 | 104 |
| Msa0505080 | MtrunA17_Chr1g0193311 | 41.026 | 156 | 90 | 2 | 1 | 156 | 1 | 154 | 2.08e-28 | 104 |
| Msa0505080 | MtrunA17_Chr3g0106421 | 42.969 | 128 | 73 | 0 | 29 | 156 | 1 | 128 | 3.98e-28 | 105 |
| Msa0505080 | MtrunA17_Chr4g0012761 | 41.611 | 149 | 85 | 2 | 1 | 149 | 1 | 147 | 4.61e-27 | 100 |
| Msa0505080 | MtrunA17_Chr1g0188661 | 41.611 | 149 | 85 | 2 | 1 | 149 | 1 | 147 | 7.47e-27 | 100 |
| Msa0505080 | MtrunA17_Chr3g0107351 | 38.095 | 147 | 90 | 1 | 3 | 149 | 2 | 147 | 8.67e-27 | 100 |
| Msa0505080 | MtrunA17_Chr3g0107341 | 37.255 | 153 | 95 | 1 | 3 | 155 | 2 | 153 | 2.04e-26 | 99.4 |
| Msa0505080 | MtrunA17_Chr1g0188651 | 41.611 | 149 | 83 | 2 | 1 | 149 | 1 | 145 | 2.56e-26 | 99.0 |
| Msa0505080 | MtrunA17_Chr7g0218151 | 40.940 | 149 | 86 | 2 | 1 | 149 | 1 | 147 | 2.68e-26 | 99.0 |
| Msa0505080 | MtrunA17_Chr1g0197321 | 35.570 | 149 | 95 | 1 | 1 | 149 | 1 | 148 | 6.58e-25 | 95.5 |
| Msa0505080 | MtrunA17_Chr1g0197261 | 35.099 | 151 | 92 | 4 | 1 | 149 | 1 | 147 | 1.14e-23 | 92.0 |
| Msa0505080 | MtrunA17_Chr7g0267601 | 31.034 | 145 | 82 | 4 | 1 | 139 | 1 | 133 | 3.87e-16 | 76.3 |
| Msa0505080 | MtrunA17_Chr4g0008701 | 32.258 | 124 | 74 | 2 | 15 | 135 | 18 | 134 | 1.22e-15 | 74.7 |
| Msa0505080 | MtrunA17_Chr3g0128721 | 32.323 | 99 | 67 | 0 | 5 | 103 | 8 | 106 | 1.29e-13 | 68.9 |
| Msa0505080 | MtrunA17_Chr6g0457851 | 27.451 | 153 | 96 | 4 | 1 | 147 | 11 | 154 | 3.26e-13 | 67.4 |
| Msa0505080 | MtrunA17_Chr1g0212151 | 29.915 | 117 | 75 | 3 | 1 | 111 | 1 | 116 | 4.43e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505080 | AT5G48670.1 | 51.656 | 151 | 68 | 3 | 1 | 149 | 1 | 148 | 9.08e-38 | 133 |
| Msa0505080 | AT3G05860.2 | 43.046 | 151 | 81 | 2 | 1 | 149 | 1 | 148 | 6.56e-32 | 115 |
| Msa0505080 | AT3G05860.3 | 43.046 | 151 | 81 | 2 | 1 | 149 | 1 | 148 | 1.71e-31 | 115 |
| Msa0505080 | AT3G05860.1 | 43.046 | 151 | 81 | 2 | 1 | 149 | 1 | 148 | 3.05e-31 | 115 |
| Msa0505080 | AT1G65330.1 | 42.000 | 150 | 85 | 2 | 3 | 152 | 2 | 149 | 1.10e-30 | 114 |
| Msa0505080 | AT5G27810.1 | 52.809 | 89 | 42 | 0 | 29 | 117 | 1 | 89 | 1.83e-28 | 103 |
| Msa0505080 | AT1G65300.1 | 40.690 | 145 | 85 | 1 | 3 | 147 | 2 | 145 | 5.14e-28 | 107 |
| Msa0505080 | AT5G26650.1 | 45.872 | 109 | 59 | 0 | 5 | 113 | 3 | 111 | 1.71e-26 | 104 |
| Msa0505080 | AT1G31630.1 | 37.838 | 148 | 88 | 3 | 3 | 149 | 2 | 146 | 5.26e-26 | 102 |
| Msa0505080 | AT5G27960.1 | 44.954 | 109 | 60 | 0 | 5 | 113 | 3 | 111 | 1.14e-25 | 101 |
| Msa0505080 | AT1G22590.2 | 39.823 | 113 | 68 | 0 | 1 | 113 | 1 | 113 | 1.44e-24 | 95.1 |
| Msa0505080 | AT1G31640.1 | 39.869 | 153 | 78 | 4 | 3 | 149 | 2 | 146 | 3.16e-24 | 99.4 |
| Msa0505080 | AT5G26630.1 | 37.584 | 149 | 92 | 1 | 1 | 149 | 1 | 148 | 1.04e-22 | 91.7 |
| Msa0505080 | AT2G28700.1 | 39.806 | 103 | 62 | 0 | 1 | 103 | 1 | 103 | 2.59e-19 | 84.7 |
| Msa0505080 | AT5G06500.1 | 36.036 | 111 | 67 | 1 | 1 | 111 | 1 | 107 | 5.15e-19 | 82.4 |
| Msa0505080 | AT2G40210.1 | 36.634 | 101 | 64 | 0 | 1 | 101 | 1 | 101 | 1.30e-14 | 71.6 |
| Msa0505080 | AT5G26580.1 | 37.255 | 102 | 50 | 1 | 1 | 102 | 1 | 88 | 1.44e-13 | 68.6 |
| Msa0505080 | AT5G55690.1 | 36.275 | 102 | 58 | 3 | 1 | 95 | 1 | 102 | 7.57e-11 | 60.5 |
| Msa0505080 | AT5G55690.2 | 36.275 | 102 | 58 | 3 | 1 | 95 | 1 | 102 | 7.57e-11 | 60.5 |
Find 44 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCATCTTTC+TGG | 0.077675 | 3_4:+50380206 | None:intergenic |
| ATTCAAACCATAGAATTTAA+TGG | 0.173791 | 3_4:-50380168 | Msa0505080:CDS |
| CGAATTTCCATTAAATTCTA+TGG | 0.218755 | 3_4:+50380161 | None:intergenic |
| GAGGTTTGGCCATCAGATTC+AGG | 0.258145 | 3_4:-50380363 | Msa0505080:CDS |
| CGCTACCATGACTAGAAATA+AGG | 0.322931 | 3_4:-50380762 | None:intergenic |
| TCTTCTTGAGGCAAAACATT+AGG | 0.355934 | 3_4:-50380266 | Msa0505080:CDS |
| AATATAATGATCAATGATAT+TGG | 0.368342 | 3_4:+50380188 | None:intergenic |
| TCTTGGTGAGAGTCACGAAT+TGG | 0.372334 | 3_4:+50378422 | None:intergenic |
| AGTCACAACAAACAGAAGTA+TGG | 0.388953 | 3_4:-50378378 | Msa0505080:CDS |
| GCAAGAAGCTGCTAACTTCT+TGG | 0.396757 | 3_4:+50378405 | None:intergenic |
| TACTTCTGTTTGTTGTGACT+TGG | 0.424400 | 3_4:+50378381 | None:intergenic |
| GAAGTGTGATATCTAGGTTT+AGG | 0.426765 | 3_4:-50380335 | Msa0505080:CDS |
| GGGTCAGAAGTGTGATATCT+AGG | 0.436600 | 3_4:-50380341 | Msa0505080:CDS |
| GTTGACCATACAAGCGCTAT+AGG | 0.437424 | 3_4:+50378462 | None:intergenic |
| GAAGTATGGAAGTGTAATGA+TGG | 0.442119 | 3_4:-50378364 | Msa0505080:CDS |
| TCTAGGTTTAGGAGTTTGCC+TGG | 0.445921 | 3_4:-50380324 | Msa0505080:CDS |
| CTTGGTGAGAGTCACGAATT+GGG | 0.482611 | 3_4:+50378423 | None:intergenic |
| ACAACCCTCGAGTAGAGGTT+TGG | 0.487846 | 3_4:-50380377 | Msa0505080:CDS |
| GGATGCCTATAGCGCTTGTA+TGG | 0.501591 | 3_4:-50378467 | Msa0505080:CDS |
| ATTGGGAAGCCATAGGGTTG+TGG | 0.507933 | 3_4:+50378440 | None:intergenic |
| AGGTTTGGCCATCAGATTCA+GGG | 0.511068 | 3_4:-50380362 | Msa0505080:CDS |
| ACGAGCAGTTGAAGAAGCAA+AGG | 0.512962 | 3_4:-50380236 | Msa0505080:CDS |
| AAGGGAGGAAACCAGAAAGA+TGG | 0.513695 | 3_4:-50380217 | Msa0505080:CDS |
| GGAGGATAACATACAGAAAG+AGG | 0.518632 | 3_4:-50380706 | Msa0505080:CDS |
| TATGGTCAACCACAACCCTA+TGG | 0.524945 | 3_4:-50378449 | Msa0505080:CDS |
| TTTCACCTTATTTCTAGTCA+TGG | 0.525434 | 3_4:+50380757 | None:intergenic |
| GTCACGAATTGGGAAGCCAT+AGG | 0.547074 | 3_4:+50378433 | None:intergenic |
| GATGGGAAAGAGAACAAAGA+AGG | 0.565301 | 3_4:-50378346 | Msa0505080:CDS |
| TCACGAATTGGGAAGCCATA+GGG | 0.569470 | 3_4:+50378434 | None:intergenic |
| AAGTATGGAAGTGTAATGAT+GGG | 0.578866 | 3_4:-50378363 | Msa0505080:CDS |
| CGAGCAGTTGAAGAAGCAAA+GGG | 0.580872 | 3_4:-50380235 | Msa0505080:CDS |
| ACATGCTTCGACTCCACATA+GGG | 0.581479 | 3_4:+50380419 | None:intergenic |
| TATTGATGAGAATTTGAAGG+AGG | 0.592173 | 3_4:-50380103 | Msa0505080:intron |
| CACATGCTTCGACTCCACAT+AGG | 0.603214 | 3_4:+50380418 | None:intergenic |
| AATGAAATTAGCACCCTATG+TGG | 0.604835 | 3_4:-50380432 | Msa0505080:CDS |
| GCAAAACAACCCTCGAGTAG+AGG | 0.609086 | 3_4:-50380382 | Msa0505080:CDS |
| ACATAACATGTGACTCGAAG+AGG | 0.616371 | 3_4:-50380727 | Msa0505080:CDS |
| CTTCTGACCCCTGAATCTGA+TGG | 0.624024 | 3_4:+50380354 | None:intergenic |
| GATGGCCAAACCTCTACTCG+AGG | 0.634480 | 3_4:+50380372 | None:intergenic |
| GGTTTGGCCATCAGATTCAG+GGG | 0.657992 | 3_4:-50380361 | Msa0505080:CDS |
| ATGGCCAAACCTCTACTCGA+GGG | 0.659257 | 3_4:+50380373 | None:intergenic |
| TAACATGTGACTCGAAGAGG+AGG | 0.659370 | 3_4:-50380724 | Msa0505080:CDS |
| GCAGTTGAAGAAGCAAAGGG+AGG | 0.693727 | 3_4:-50380232 | Msa0505080:CDS |
| TGGATCAGGAGGTCTTCTTG+AGG | 0.700337 | 3_4:-50380278 | Msa0505080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATATAGAATTTTTTTAAT+AGG | - | chr3_4:50378620-50378639 | Msa0505080:intron | 10.0% |
| !!! | TGATATAGAATTTTTTTAAT+AGG | - | chr3_4:50378620-50378639 | Msa0505080:intron | 10.0% |
| !! | AATATAATGATCAATGATAT+TGG | + | chr3_4:50378906-50378925 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTGTACTCTTTT+AGG | + | chr3_4:50379887-50379906 | None:intergenic | 15.0% |
| !!! | AGTTTTTATTGTTACTAAAA+TGG | - | chr3_4:50380389-50380408 | Msa0505080:CDS | 15.0% |
| !! | AATATAATGATCAATGATAT+TGG | + | chr3_4:50378906-50378925 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTGTACTCTTTT+AGG | + | chr3_4:50379887-50379906 | None:intergenic | 15.0% |
| !!! | AGTTTTTATTGTTACTAAAA+TGG | - | chr3_4:50380389-50380408 | Msa0505080:CDS | 15.0% |
| !! | AATAAACAATATACAATCGA+TGG | + | chr3_4:50378601-50378620 | None:intergenic | 20.0% |
| !! | ATTCAAACCATAGAATTTAA+TGG | - | chr3_4:50378923-50378942 | Msa0505080:intron | 20.0% |
| !!! | TTTTATTGATGAGAATTTGA+AGG | - | chr3_4:50378985-50379004 | Msa0505080:intron | 20.0% |
| !! | TTCTATTTATAAGAGAAAGT+TGG | - | chr3_4:50379128-50379147 | Msa0505080:intron | 20.0% |
| !! | ACAAATCATGTTTACAATTA+CGG | - | chr3_4:50379724-50379743 | Msa0505080:intron | 20.0% |
| !! | TTAATCGATAACAAAACAAA+AGG | - | chr3_4:50379936-50379955 | Msa0505080:intron | 20.0% |
| !! | TAGAAATACTATTCAAACAT+GGG | - | chr3_4:50380246-50380265 | Msa0505080:CDS | 20.0% |
| !! | AATAAACAATATACAATCGA+TGG | + | chr3_4:50378601-50378620 | None:intergenic | 20.0% |
| !! | ATTCAAACCATAGAATTTAA+TGG | - | chr3_4:50378923-50378942 | Msa0505080:intron | 20.0% |
| !!! | TTTTATTGATGAGAATTTGA+AGG | - | chr3_4:50378985-50379004 | Msa0505080:intron | 20.0% |
| !! | TTCTATTTATAAGAGAAAGT+TGG | - | chr3_4:50379128-50379147 | Msa0505080:intron | 20.0% |
| !! | ACAAATCATGTTTACAATTA+CGG | - | chr3_4:50379724-50379743 | Msa0505080:intron | 20.0% |
| !! | TTAATCGATAACAAAACAAA+AGG | - | chr3_4:50379936-50379955 | Msa0505080:intron | 20.0% |
| !! | TAGAAATACTATTCAAACAT+GGG | - | chr3_4:50380246-50380265 | Msa0505080:CDS | 20.0% |
| !! | TACATGCTTTGTTGAAATTA+TGG | + | chr3_4:50378434-50378453 | None:intergenic | 25.0% |
| ! | TGTTAACATGTGATATTTCT+AGG | + | chr3_4:50378494-50378513 | None:intergenic | 25.0% |
| ! | ACATGAACAAAGTAAAAAGA+TGG | - | chr3_4:50378790-50378809 | Msa0505080:intron | 25.0% |
| ! | CGAATTTCCATTAAATTCTA+TGG | + | chr3_4:50378933-50378952 | None:intergenic | 25.0% |
| !! | GTCAATATGATAGTATTTTC+CGG | + | chr3_4:50379096-50379115 | None:intergenic | 25.0% |
| ! | CTTTCTCTTATAAATAGAAC+CGG | + | chr3_4:50379127-50379146 | None:intergenic | 25.0% |
| !!! | TCAACAAAAGTTGATGTATA+TGG | - | chr3_4:50379152-50379171 | Msa0505080:intron | 25.0% |
| ! | TCAACAAAAGTTAATGTACT+TGG | + | chr3_4:50379191-50379210 | None:intergenic | 25.0% |
| ! | ACAATAAAACCAAATGATAG+TGG | + | chr3_4:50379304-50379323 | None:intergenic | 25.0% |
| ! | GACAAACTTTCAAACAAAAA+AGG | + | chr3_4:50379332-50379351 | None:intergenic | 25.0% |
| ! | GACGAAAAATAAATGTAGTT+TGG | + | chr3_4:50379617-50379636 | None:intergenic | 25.0% |
| ! | TTACTGTATATGACAAGTTT+GGG | + | chr3_4:50379639-50379658 | None:intergenic | 25.0% |
| ! | TAACACATAAACATAACTCA+TGG | - | chr3_4:50379656-50379675 | Msa0505080:intron | 25.0% |
| !! | AAAACATGTTTTGTATGCAA+CGG | + | chr3_4:50379780-50379799 | None:intergenic | 25.0% |
| ! | TATATAATCATTGTCGTCAA+TGG | + | chr3_4:50379820-50379839 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTCTTCCTACTAA+AGG | + | chr3_4:50380206-50380225 | None:intergenic | 25.0% |
| ! | CATGTTTGAATAGTATTTCT+AGG | + | chr3_4:50380247-50380266 | None:intergenic | 25.0% |
| ! | CTAGAAATACTATTCAAACA+TGG | - | chr3_4:50380245-50380264 | Msa0505080:CDS | 25.0% |
| ! | ATCCAACAACATTCTTATTA+GGG | + | chr3_4:50380476-50380495 | None:intergenic | 25.0% |
| !!! | CCTTATTTTCTTCTAAATCT+CGG | + | chr3_4:50380543-50380562 | None:intergenic | 25.0% |
| !! | GTTTTATACCGTTATTGATA+CGG | - | chr3_4:50380573-50380592 | Msa0505080:intron | 25.0% |
| !! | TTTTATACCGTTATTGATAC+GGG | - | chr3_4:50380574-50380593 | Msa0505080:intron | 25.0% |
| !! | TACATGCTTTGTTGAAATTA+TGG | + | chr3_4:50378434-50378453 | None:intergenic | 25.0% |
| ! | TGTTAACATGTGATATTTCT+AGG | + | chr3_4:50378494-50378513 | None:intergenic | 25.0% |
| ! | ACATGAACAAAGTAAAAAGA+TGG | - | chr3_4:50378790-50378809 | Msa0505080:intron | 25.0% |
| ! | CGAATTTCCATTAAATTCTA+TGG | + | chr3_4:50378933-50378952 | None:intergenic | 25.0% |
| !! | GTCAATATGATAGTATTTTC+CGG | + | chr3_4:50379096-50379115 | None:intergenic | 25.0% |
| ! | CTTTCTCTTATAAATAGAAC+CGG | + | chr3_4:50379127-50379146 | None:intergenic | 25.0% |
| !!! | TCAACAAAAGTTGATGTATA+TGG | - | chr3_4:50379152-50379171 | Msa0505080:intron | 25.0% |
| ! | TCAACAAAAGTTAATGTACT+TGG | + | chr3_4:50379191-50379210 | None:intergenic | 25.0% |
| ! | ACAATAAAACCAAATGATAG+TGG | + | chr3_4:50379304-50379323 | None:intergenic | 25.0% |
| ! | GACAAACTTTCAAACAAAAA+AGG | + | chr3_4:50379332-50379351 | None:intergenic | 25.0% |
| ! | GACGAAAAATAAATGTAGTT+TGG | + | chr3_4:50379617-50379636 | None:intergenic | 25.0% |
| ! | TTACTGTATATGACAAGTTT+GGG | + | chr3_4:50379639-50379658 | None:intergenic | 25.0% |
| ! | TAACACATAAACATAACTCA+TGG | - | chr3_4:50379656-50379675 | Msa0505080:intron | 25.0% |
| !! | AAAACATGTTTTGTATGCAA+CGG | + | chr3_4:50379780-50379799 | None:intergenic | 25.0% |
| ! | TATATAATCATTGTCGTCAA+TGG | + | chr3_4:50379820-50379839 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTCTTCCTACTAA+AGG | + | chr3_4:50380206-50380225 | None:intergenic | 25.0% |
| ! | CATGTTTGAATAGTATTTCT+AGG | + | chr3_4:50380247-50380266 | None:intergenic | 25.0% |
| ! | CTAGAAATACTATTCAAACA+TGG | - | chr3_4:50380245-50380264 | Msa0505080:CDS | 25.0% |
| ! | ATCCAACAACATTCTTATTA+GGG | + | chr3_4:50380476-50380495 | None:intergenic | 25.0% |
| !!! | CCTTATTTTCTTCTAAATCT+CGG | + | chr3_4:50380543-50380562 | None:intergenic | 25.0% |
| !! | GTTTTATACCGTTATTGATA+CGG | - | chr3_4:50380573-50380592 | Msa0505080:intron | 25.0% |
| !! | TTTTATACCGTTATTGATAC+GGG | - | chr3_4:50380574-50380593 | Msa0505080:intron | 25.0% |
| ACATACAGAAAGAGGAAAAA+TGG | - | chr3_4:50378393-50378412 | Msa0505080:CDS | 30.0% | |
| ! | TTTTTACTTTGTTCATGTCC+AGG | + | chr3_4:50378788-50378807 | None:intergenic | 30.0% |
| TGAACAAAGTAAAAAGATGG+TGG | - | chr3_4:50378793-50378812 | Msa0505080:intron | 30.0% | |
| TATTGATGAGAATTTGAAGG+AGG | - | chr3_4:50378988-50379007 | Msa0505080:intron | 30.0% | |
| AATGACAATGAAAGATCAAG+AGG | - | chr3_4:50379030-50379049 | Msa0505080:intron | 30.0% | |
| ! | CCTTTTTATAGGAGAATACT+TGG | + | chr3_4:50379214-50379233 | None:intergenic | 30.0% |
| CCAAGTATTCTCCTATAAAA+AGG | - | chr3_4:50379211-50379230 | Msa0505080:intron | 30.0% | |
| TATTCTCCTATAAAAAGGAC+CGG | - | chr3_4:50379216-50379235 | Msa0505080:intron | 30.0% | |
| !! | TTCTCTTTTGTTGTGTGATA+TGG | - | chr3_4:50379268-50379287 | Msa0505080:intron | 30.0% |
| ! | TTCCATTGATTATCATCGAT+CGG | + | chr3_4:50379418-50379437 | None:intergenic | 30.0% |
| ! | TTTTGTGATCTCCAAATGAT+CGG | - | chr3_4:50379453-50379472 | Msa0505080:intron | 30.0% |
| ! | CTAAGGAGAAATTTTCATGT+TGG | + | chr3_4:50379521-50379540 | None:intergenic | 30.0% |
| CAACATGAAAATTTCTCCTT+AGG | - | chr3_4:50379519-50379538 | Msa0505080:intron | 30.0% | |
| !!! | AATTGTTGTTGGAGGTATTT+TGG | + | chr3_4:50379579-50379598 | None:intergenic | 30.0% |
| AAATGTAGTTTGGAAACGAA+CGG | + | chr3_4:50379607-50379626 | None:intergenic | 30.0% | |
| GTTACTGTATATGACAAGTT+TGG | + | chr3_4:50379640-50379659 | None:intergenic | 30.0% | |
| ! | AAACATGATTTGTGTAGAGA+TGG | + | chr3_4:50379717-50379736 | None:intergenic | 30.0% |
| GTTTGATTCTTGTTAGAAAC+AGG | - | chr3_4:50379746-50379765 | Msa0505080:intron | 30.0% | |
| ! | AAACATGTTTTGTATGCAAC+GGG | + | chr3_4:50379779-50379798 | None:intergenic | 30.0% |
| !!! | TTTTCGCTCTTGTTTCTATT+GGG | + | chr3_4:50379965-50379984 | None:intergenic | 30.0% |
| !!! | ATTTTCGCTCTTGTTTCTAT+TGG | + | chr3_4:50379966-50379985 | None:intergenic | 30.0% |
| AAATCATCTAACCTCCTATT+AGG | - | chr3_4:50380002-50380021 | Msa0505080:intron | 30.0% | |
| !! | TTCATAGTCTTACTCTCTTT+TGG | + | chr3_4:50380043-50380062 | None:intergenic | 30.0% |
| CACATGTAGTATTTGTTTGT+GGG | + | chr3_4:50380087-50380106 | None:intergenic | 30.0% | |
| TCACATGTAGTATTTGTTTG+TGG | + | chr3_4:50380088-50380107 | None:intergenic | 30.0% | |
| TATCAATGCCAACACATAAT+GGG | - | chr3_4:50380111-50380130 | Msa0505080:CDS | 30.0% | |
| TTTCTTCTTGATCCTTTAGT+AGG | - | chr3_4:50380191-50380210 | Msa0505080:CDS | 30.0% | |
| GCTTGAGGAAAAAAAATTCT+TGG | - | chr3_4:50380273-50380292 | Msa0505080:CDS | 30.0% | |
| TTGTTACTAAAATGGTGTCT+TGG | - | chr3_4:50380397-50380416 | Msa0505080:CDS | 30.0% | |
| ! | TTTGAGTGGAGATTTTCATT+TGG | + | chr3_4:50380444-50380463 | None:intergenic | 30.0% |
| AAATGAAAATCTCCACTCAA+AGG | - | chr3_4:50380443-50380462 | Msa0505080:CDS | 30.0% | |
| CATCCAACAACATTCTTATT+AGG | + | chr3_4:50380477-50380496 | None:intergenic | 30.0% | |
| CCGAGATTTAGAAGAAAATA+AGG | - | chr3_4:50380540-50380559 | Msa0505080:intron | 30.0% | |
| ! | AAGTATGGAAGTGTAATGAT+GGG | - | chr3_4:50380728-50380747 | Msa0505080:CDS | 30.0% |
| ACATACAGAAAGAGGAAAAA+TGG | - | chr3_4:50378393-50378412 | Msa0505080:CDS | 30.0% | |
| ! | TTTTTACTTTGTTCATGTCC+AGG | + | chr3_4:50378788-50378807 | None:intergenic | 30.0% |
| TGAACAAAGTAAAAAGATGG+TGG | - | chr3_4:50378793-50378812 | Msa0505080:intron | 30.0% | |
| TATTGATGAGAATTTGAAGG+AGG | - | chr3_4:50378988-50379007 | Msa0505080:intron | 30.0% | |
| AATGACAATGAAAGATCAAG+AGG | - | chr3_4:50379030-50379049 | Msa0505080:intron | 30.0% | |
| ! | CCTTTTTATAGGAGAATACT+TGG | + | chr3_4:50379214-50379233 | None:intergenic | 30.0% |
| CCAAGTATTCTCCTATAAAA+AGG | - | chr3_4:50379211-50379230 | Msa0505080:intron | 30.0% | |
| TATTCTCCTATAAAAAGGAC+CGG | - | chr3_4:50379216-50379235 | Msa0505080:intron | 30.0% | |
| !! | TTCTCTTTTGTTGTGTGATA+TGG | - | chr3_4:50379268-50379287 | Msa0505080:intron | 30.0% |
| ! | TTCCATTGATTATCATCGAT+CGG | + | chr3_4:50379418-50379437 | None:intergenic | 30.0% |
| ! | TTTTGTGATCTCCAAATGAT+CGG | - | chr3_4:50379453-50379472 | Msa0505080:intron | 30.0% |
| ! | CTAAGGAGAAATTTTCATGT+TGG | + | chr3_4:50379521-50379540 | None:intergenic | 30.0% |
| CAACATGAAAATTTCTCCTT+AGG | - | chr3_4:50379519-50379538 | Msa0505080:intron | 30.0% | |
| !!! | AATTGTTGTTGGAGGTATTT+TGG | + | chr3_4:50379579-50379598 | None:intergenic | 30.0% |
| AAATGTAGTTTGGAAACGAA+CGG | + | chr3_4:50379607-50379626 | None:intergenic | 30.0% | |
| GTTACTGTATATGACAAGTT+TGG | + | chr3_4:50379640-50379659 | None:intergenic | 30.0% | |
| ! | AAACATGATTTGTGTAGAGA+TGG | + | chr3_4:50379717-50379736 | None:intergenic | 30.0% |
| GTTTGATTCTTGTTAGAAAC+AGG | - | chr3_4:50379746-50379765 | Msa0505080:intron | 30.0% | |
| ! | AAACATGTTTTGTATGCAAC+GGG | + | chr3_4:50379779-50379798 | None:intergenic | 30.0% |
| !!! | TTTTCGCTCTTGTTTCTATT+GGG | + | chr3_4:50379965-50379984 | None:intergenic | 30.0% |
| !!! | ATTTTCGCTCTTGTTTCTAT+TGG | + | chr3_4:50379966-50379985 | None:intergenic | 30.0% |
| AAATCATCTAACCTCCTATT+AGG | - | chr3_4:50380002-50380021 | Msa0505080:intron | 30.0% | |
| !! | TTCATAGTCTTACTCTCTTT+TGG | + | chr3_4:50380043-50380062 | None:intergenic | 30.0% |
| CACATGTAGTATTTGTTTGT+GGG | + | chr3_4:50380087-50380106 | None:intergenic | 30.0% | |
| TCACATGTAGTATTTGTTTG+TGG | + | chr3_4:50380088-50380107 | None:intergenic | 30.0% | |
| TATCAATGCCAACACATAAT+GGG | - | chr3_4:50380111-50380130 | Msa0505080:CDS | 30.0% | |
| TTTCTTCTTGATCCTTTAGT+AGG | - | chr3_4:50380191-50380210 | Msa0505080:CDS | 30.0% | |
| GCTTGAGGAAAAAAAATTCT+TGG | - | chr3_4:50380273-50380292 | Msa0505080:CDS | 30.0% | |
| TTGTTACTAAAATGGTGTCT+TGG | - | chr3_4:50380397-50380416 | Msa0505080:CDS | 30.0% | |
| ! | TTTGAGTGGAGATTTTCATT+TGG | + | chr3_4:50380444-50380463 | None:intergenic | 30.0% |
| AAATGAAAATCTCCACTCAA+AGG | - | chr3_4:50380443-50380462 | Msa0505080:CDS | 30.0% | |
| CATCCAACAACATTCTTATT+AGG | + | chr3_4:50380477-50380496 | None:intergenic | 30.0% | |
| CCGAGATTTAGAAGAAAATA+AGG | - | chr3_4:50380540-50380559 | Msa0505080:intron | 30.0% | |
| ! | AAGTATGGAAGTGTAATGAT+GGG | - | chr3_4:50380728-50380747 | Msa0505080:CDS | 30.0% |
| ! | GCTTTGTTGAAATTATGGAG+AGG | + | chr3_4:50378429-50378448 | None:intergenic | 35.0% |
| AATGAAATTAGCACCCTATG+TGG | - | chr3_4:50378659-50378678 | Msa0505080:intron | 35.0% | |
| GAAGTGTGATATCTAGGTTT+AGG | - | chr3_4:50378756-50378775 | Msa0505080:intron | 35.0% | |
| !! | AAGTAAAAAGATGGTGGATC+AGG | - | chr3_4:50378799-50378818 | Msa0505080:intron | 35.0% |
| TCTTCTTGAGGCAAAACATT+AGG | - | chr3_4:50378825-50378844 | Msa0505080:intron | 35.0% | |
| ATTGGTCATTTCCATCTTTC+TGG | + | chr3_4:50378888-50378907 | None:intergenic | 35.0% | |
| ! | AGAATTTGAAGGAGGTTGAT+CGG | - | chr3_4:50378996-50379015 | Msa0505080:intron | 35.0% |
| TGGGATTATGAATAGGACTA+AGG | - | chr3_4:50379068-50379087 | Msa0505080:intron | 35.0% | |
| CTCTTATAAATAGAACCGGA+GGG | + | chr3_4:50379123-50379142 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGAACCGG+AGG | + | chr3_4:50379124-50379143 | None:intergenic | 35.0% | |
| TACCGATCGATGATAATCAA+TGG | - | chr3_4:50379413-50379432 | Msa0505080:intron | 35.0% | |
| GAACTCTTATACCGATCATT+TGG | + | chr3_4:50379467-50379486 | None:intergenic | 35.0% | |
| TGGTTTGAGTCTAAGTGTAT+GGG | + | chr3_4:50379501-50379520 | None:intergenic | 35.0% | |
| ! | TTGGTTTGAGTCTAAGTGTA+TGG | + | chr3_4:50379502-50379521 | None:intergenic | 35.0% |
| GAACGGTAGTTAATTGTTGT+TGG | + | chr3_4:50379590-50379609 | None:intergenic | 35.0% | |
| !! | TTTCGCTCTTGTTTCTATTG+GGG | + | chr3_4:50379964-50379983 | None:intergenic | 35.0% |
| TGTAGTATTTGTTTGTGGGT+TGG | + | chr3_4:50380083-50380102 | None:intergenic | 35.0% | |
| CTATCAATGCCAACACATAA+TGG | - | chr3_4:50380110-50380129 | Msa0505080:CDS | 35.0% | |
| TGCCCTAATAAGAATGTTGT+TGG | - | chr3_4:50380471-50380490 | Msa0505080:intron | 35.0% | |
| ! | TTTTGCACCCGTATCAATAA+CGG | + | chr3_4:50380584-50380603 | None:intergenic | 35.0% |
| ! | TGCAAAAACATAGGGAGTTT+TGG | - | chr3_4:50380597-50380616 | Msa0505080:intron | 35.0% |
| !! | TACTTCTGTTTGTTGTGACT+TGG | + | chr3_4:50380713-50380732 | None:intergenic | 35.0% |
| AGTCACAACAAACAGAAGTA+TGG | - | chr3_4:50380713-50380732 | Msa0505080:CDS | 35.0% | |
| ! | GAAGTATGGAAGTGTAATGA+TGG | - | chr3_4:50380727-50380746 | Msa0505080:CDS | 35.0% |
| ! | GCTTTGTTGAAATTATGGAG+AGG | + | chr3_4:50378429-50378448 | None:intergenic | 35.0% |
| AATGAAATTAGCACCCTATG+TGG | - | chr3_4:50378659-50378678 | Msa0505080:intron | 35.0% | |
| GAAGTGTGATATCTAGGTTT+AGG | - | chr3_4:50378756-50378775 | Msa0505080:intron | 35.0% | |
| !! | AAGTAAAAAGATGGTGGATC+AGG | - | chr3_4:50378799-50378818 | Msa0505080:intron | 35.0% |
| TCTTCTTGAGGCAAAACATT+AGG | - | chr3_4:50378825-50378844 | Msa0505080:intron | 35.0% | |
| ATTGGTCATTTCCATCTTTC+TGG | + | chr3_4:50378888-50378907 | None:intergenic | 35.0% | |
| ! | AGAATTTGAAGGAGGTTGAT+CGG | - | chr3_4:50378996-50379015 | Msa0505080:intron | 35.0% |
| TGGGATTATGAATAGGACTA+AGG | - | chr3_4:50379068-50379087 | Msa0505080:intron | 35.0% | |
| CTCTTATAAATAGAACCGGA+GGG | + | chr3_4:50379123-50379142 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGAACCGG+AGG | + | chr3_4:50379124-50379143 | None:intergenic | 35.0% | |
| TACCGATCGATGATAATCAA+TGG | - | chr3_4:50379413-50379432 | Msa0505080:intron | 35.0% | |
| GAACTCTTATACCGATCATT+TGG | + | chr3_4:50379467-50379486 | None:intergenic | 35.0% | |
| TGGTTTGAGTCTAAGTGTAT+GGG | + | chr3_4:50379501-50379520 | None:intergenic | 35.0% | |
| ! | TTGGTTTGAGTCTAAGTGTA+TGG | + | chr3_4:50379502-50379521 | None:intergenic | 35.0% |
| GAACGGTAGTTAATTGTTGT+TGG | + | chr3_4:50379590-50379609 | None:intergenic | 35.0% | |
| !! | TTTCGCTCTTGTTTCTATTG+GGG | + | chr3_4:50379964-50379983 | None:intergenic | 35.0% |
| TGTAGTATTTGTTTGTGGGT+TGG | + | chr3_4:50380083-50380102 | None:intergenic | 35.0% | |
| CTATCAATGCCAACACATAA+TGG | - | chr3_4:50380110-50380129 | Msa0505080:CDS | 35.0% | |
| TGCCCTAATAAGAATGTTGT+TGG | - | chr3_4:50380471-50380490 | Msa0505080:intron | 35.0% | |
| ! | TTTTGCACCCGTATCAATAA+CGG | + | chr3_4:50380584-50380603 | None:intergenic | 35.0% |
| ! | TGCAAAAACATAGGGAGTTT+TGG | - | chr3_4:50380597-50380616 | Msa0505080:intron | 35.0% |
| !! | TACTTCTGTTTGTTGTGACT+TGG | + | chr3_4:50380713-50380732 | None:intergenic | 35.0% |
| AGTCACAACAAACAGAAGTA+TGG | - | chr3_4:50380713-50380732 | Msa0505080:CDS | 35.0% | |
| ! | GAAGTATGGAAGTGTAATGA+TGG | - | chr3_4:50380727-50380746 | Msa0505080:CDS | 35.0% |
| ACATAACATGTGACTCGAAG+AGG | - | chr3_4:50378364-50378383 | Msa0505080:CDS | 40.0% | |
| GGAGGATAACATACAGAAAG+AGG | - | chr3_4:50378385-50378404 | Msa0505080:CDS | 40.0% | |
| !! | TAAAAAGATGGTGGATCAGG+AGG | - | chr3_4:50378802-50378821 | Msa0505080:intron | 40.0% |
| GACAATGAAAGATCAAGAGG+AGG | - | chr3_4:50379033-50379052 | Msa0505080:intron | 40.0% | |
| ATGAAAGATCAAGAGGAGGT+TGG | - | chr3_4:50379037-50379056 | Msa0505080:intron | 40.0% | |
| ATCAAGAGGAGGTTGGAAAT+GGG | - | chr3_4:50379044-50379063 | Msa0505080:intron | 40.0% | |
| AATGGGGTGGGATTATGAAT+AGG | - | chr3_4:50379061-50379080 | Msa0505080:intron | 40.0% | |
| TATGAATAGGACTAAGGAGC+CGG | - | chr3_4:50379074-50379093 | Msa0505080:intron | 40.0% | |
| ! | ATCATATTGACTACTCCCTC+CGG | - | chr3_4:50379105-50379124 | Msa0505080:intron | 40.0% |
| GTCTCTTCTCCACTATCATT+TGG | - | chr3_4:50379292-50379311 | Msa0505080:intron | 40.0% | |
| GAAAAAACACTAGGTGCCTA+AGG | + | chr3_4:50379538-50379557 | None:intergenic | 40.0% | |
| AGTGCCTGTGAAAAAACACT+AGG | + | chr3_4:50379547-50379566 | None:intergenic | 40.0% | |
| ! | CGGTAGTTAATTGTTGTTGG+AGG | + | chr3_4:50379587-50379606 | None:intergenic | 40.0% |
| ! | TGTTTTGTATGCAACGGGAA+CGG | + | chr3_4:50379774-50379793 | None:intergenic | 40.0% |
| !! | TTCGCTCTTGTTTCTATTGG+GGG | + | chr3_4:50379963-50379982 | None:intergenic | 40.0% |
| ! | TTTTGCAATCGCCAAGTTCA+CGG | - | chr3_4:50380302-50380321 | Msa0505080:CDS | 40.0% |
| ! | AACACGATTTTCCGTGAACT+TGG | + | chr3_4:50380316-50380335 | None:intergenic | 40.0% |
| GAACACCATGATGACATAGT+CGG | - | chr3_4:50380507-50380526 | Msa0505080:intron | 40.0% | |
| TTCTTCTAAATCTCGGACCT+CGG | + | chr3_4:50380536-50380555 | None:intergenic | 40.0% | |
| TGATACGGGTGCAAAAACAT+AGG | - | chr3_4:50380588-50380607 | Msa0505080:intron | 40.0% | |
| GATACGGGTGCAAAAACATA+GGG | - | chr3_4:50380589-50380608 | Msa0505080:intron | 40.0% | |
| GATGGGAAAGAGAACAAAGA+AGG | - | chr3_4:50380745-50380764 | Msa0505080:CDS | 40.0% | |
| ACATAACATGTGACTCGAAG+AGG | - | chr3_4:50378364-50378383 | Msa0505080:CDS | 40.0% | |
| GGAGGATAACATACAGAAAG+AGG | - | chr3_4:50378385-50378404 | Msa0505080:CDS | 40.0% | |
| !! | TAAAAAGATGGTGGATCAGG+AGG | - | chr3_4:50378802-50378821 | Msa0505080:intron | 40.0% |
| GACAATGAAAGATCAAGAGG+AGG | - | chr3_4:50379033-50379052 | Msa0505080:intron | 40.0% | |
| ATGAAAGATCAAGAGGAGGT+TGG | - | chr3_4:50379037-50379056 | Msa0505080:intron | 40.0% | |
| ATCAAGAGGAGGTTGGAAAT+GGG | - | chr3_4:50379044-50379063 | Msa0505080:intron | 40.0% | |
| AATGGGGTGGGATTATGAAT+AGG | - | chr3_4:50379061-50379080 | Msa0505080:intron | 40.0% | |
| TATGAATAGGACTAAGGAGC+CGG | - | chr3_4:50379074-50379093 | Msa0505080:intron | 40.0% | |
| ! | ATCATATTGACTACTCCCTC+CGG | - | chr3_4:50379105-50379124 | Msa0505080:intron | 40.0% |
| GTCTCTTCTCCACTATCATT+TGG | - | chr3_4:50379292-50379311 | Msa0505080:intron | 40.0% | |
| GAAAAAACACTAGGTGCCTA+AGG | + | chr3_4:50379538-50379557 | None:intergenic | 40.0% | |
| AGTGCCTGTGAAAAAACACT+AGG | + | chr3_4:50379547-50379566 | None:intergenic | 40.0% | |
| ! | CGGTAGTTAATTGTTGTTGG+AGG | + | chr3_4:50379587-50379606 | None:intergenic | 40.0% |
| ! | TGTTTTGTATGCAACGGGAA+CGG | + | chr3_4:50379774-50379793 | None:intergenic | 40.0% |
| !! | TTCGCTCTTGTTTCTATTGG+GGG | + | chr3_4:50379963-50379982 | None:intergenic | 40.0% |
| ! | TTTTGCAATCGCCAAGTTCA+CGG | - | chr3_4:50380302-50380321 | Msa0505080:CDS | 40.0% |
| ! | AACACGATTTTCCGTGAACT+TGG | + | chr3_4:50380316-50380335 | None:intergenic | 40.0% |
| GAACACCATGATGACATAGT+CGG | - | chr3_4:50380507-50380526 | Msa0505080:intron | 40.0% | |
| TTCTTCTAAATCTCGGACCT+CGG | + | chr3_4:50380536-50380555 | None:intergenic | 40.0% | |
| TGATACGGGTGCAAAAACAT+AGG | - | chr3_4:50380588-50380607 | Msa0505080:intron | 40.0% | |
| GATACGGGTGCAAAAACATA+GGG | - | chr3_4:50380589-50380608 | Msa0505080:intron | 40.0% | |
| GATGGGAAAGAGAACAAAGA+AGG | - | chr3_4:50380745-50380764 | Msa0505080:CDS | 40.0% | |
| TAACATGTGACTCGAAGAGG+AGG | - | chr3_4:50378367-50378386 | Msa0505080:CDS | 45.0% | |
| ACATGCTTCGACTCCACATA+GGG | + | chr3_4:50378675-50378694 | None:intergenic | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | - | chr3_4:50378729-50378748 | Msa0505080:intron | 45.0% | |
| ! | GGGTCAGAAGTGTGATATCT+AGG | - | chr3_4:50378750-50378769 | Msa0505080:intron | 45.0% |
| TCTAGGTTTAGGAGTTTGCC+TGG | - | chr3_4:50378767-50378786 | Msa0505080:intron | 45.0% | |
| ACGAGCAGTTGAAGAAGCAA+AGG | - | chr3_4:50378855-50378874 | Msa0505080:intron | 45.0% | |
| CGAGCAGTTGAAGAAGCAAA+GGG | - | chr3_4:50378856-50378875 | Msa0505080:intron | 45.0% | |
| AAGGGAGGAAACCAGAAAGA+TGG | - | chr3_4:50378874-50378893 | Msa0505080:intron | 45.0% | |
| GATCAAGAGGAGGTTGGAAA+TGG | - | chr3_4:50379043-50379062 | Msa0505080:intron | 45.0% | |
| TCAAGAGGAGGTTGGAAATG+GGG | - | chr3_4:50379045-50379064 | Msa0505080:intron | 45.0% | |
| TCTCCTATAAAAAGGACCGG+AGG | - | chr3_4:50379219-50379238 | Msa0505080:intron | 45.0% | |
| CTCCTATAAAAAGGACCGGA+GGG | - | chr3_4:50379220-50379239 | Msa0505080:intron | 45.0% | |
| CCATTCATAACTACTCCCTC+CGG | + | chr3_4:50379238-50379257 | None:intergenic | 45.0% | |
| !!! | GGCACCTAGTGTTTTTTCAC+AGG | - | chr3_4:50379540-50379559 | Msa0505080:intron | 45.0% |
| ! | GTTTTGTATGCAACGGGAAC+GGG | + | chr3_4:50379773-50379792 | None:intergenic | 45.0% |
| TGAGGTTGGGTGATCCTAAT+AGG | + | chr3_4:50380019-50380038 | None:intergenic | 45.0% | |
| !! | ACTCTCTTTTGGCTGAGGTT+GGG | + | chr3_4:50380032-50380051 | None:intergenic | 45.0% |
| !! | TACTCTCTTTTGGCTGAGGT+TGG | + | chr3_4:50380033-50380052 | None:intergenic | 45.0% |
| !! | GTCTTACTCTCTTTTGGCTG+AGG | + | chr3_4:50380037-50380056 | None:intergenic | 45.0% |
| !! | TTTGTGGGTTGGTTGTCGTT+GGG | + | chr3_4:50380072-50380091 | None:intergenic | 45.0% |
| TCGCAAGTCCCATTATGTGT+TGG | + | chr3_4:50380122-50380141 | None:intergenic | 45.0% | |
| TGCGATTACTCTTGCTCCAA+TGG | - | chr3_4:50380137-50380156 | Msa0505080:CDS | 45.0% | |
| CTAATCTTGAGCGATGCCAT+TGG | + | chr3_4:50380156-50380175 | None:intergenic | 45.0% | |
| GCATCGCTCAAGATTAGAAG+AGG | - | chr3_4:50380159-50380178 | Msa0505080:CDS | 45.0% | |
| TCAAACATGGGATGAGCTTG+AGG | - | chr3_4:50380258-50380277 | Msa0505080:CDS | 45.0% | |
| GGTATCCGACTATGTCATCA+TGG | + | chr3_4:50380515-50380534 | None:intergenic | 45.0% | |
| !!! | AACATAGGGAGTTTTGGAGC+TGG | - | chr3_4:50380603-50380622 | Msa0505080:intron | 45.0% |
| GTTGACCATACAAGCGCTAT+AGG | + | chr3_4:50380632-50380651 | None:intergenic | 45.0% | |
| TATGGTCAACCACAACCCTA+TGG | - | chr3_4:50380642-50380661 | Msa0505080:intron | 45.0% | |
| TCACGAATTGGGAAGCCATA+GGG | + | chr3_4:50380660-50380679 | None:intergenic | 45.0% | |
| CTTGGTGAGAGTCACGAATT+GGG | + | chr3_4:50380671-50380690 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGTCACGAAT+TGG | + | chr3_4:50380672-50380691 | None:intergenic | 45.0% | |
| GCAAGAAGCTGCTAACTTCT+TGG | + | chr3_4:50380689-50380708 | None:intergenic | 45.0% | |
| TAACATGTGACTCGAAGAGG+AGG | - | chr3_4:50378367-50378386 | Msa0505080:CDS | 45.0% | |
| ACATGCTTCGACTCCACATA+GGG | + | chr3_4:50378675-50378694 | None:intergenic | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | - | chr3_4:50378729-50378748 | Msa0505080:intron | 45.0% | |
| ! | GGGTCAGAAGTGTGATATCT+AGG | - | chr3_4:50378750-50378769 | Msa0505080:intron | 45.0% |
| TCTAGGTTTAGGAGTTTGCC+TGG | - | chr3_4:50378767-50378786 | Msa0505080:intron | 45.0% | |
| ACGAGCAGTTGAAGAAGCAA+AGG | - | chr3_4:50378855-50378874 | Msa0505080:intron | 45.0% | |
| CGAGCAGTTGAAGAAGCAAA+GGG | - | chr3_4:50378856-50378875 | Msa0505080:intron | 45.0% | |
| AAGGGAGGAAACCAGAAAGA+TGG | - | chr3_4:50378874-50378893 | Msa0505080:intron | 45.0% | |
| GATCAAGAGGAGGTTGGAAA+TGG | - | chr3_4:50379043-50379062 | Msa0505080:intron | 45.0% | |
| TCAAGAGGAGGTTGGAAATG+GGG | - | chr3_4:50379045-50379064 | Msa0505080:intron | 45.0% | |
| TCTCCTATAAAAAGGACCGG+AGG | - | chr3_4:50379219-50379238 | Msa0505080:intron | 45.0% | |
| CTCCTATAAAAAGGACCGGA+GGG | - | chr3_4:50379220-50379239 | Msa0505080:intron | 45.0% | |
| CCATTCATAACTACTCCCTC+CGG | + | chr3_4:50379238-50379257 | None:intergenic | 45.0% | |
| !!! | GGCACCTAGTGTTTTTTCAC+AGG | - | chr3_4:50379540-50379559 | Msa0505080:intron | 45.0% |
| ! | GTTTTGTATGCAACGGGAAC+GGG | + | chr3_4:50379773-50379792 | None:intergenic | 45.0% |
| TGAGGTTGGGTGATCCTAAT+AGG | + | chr3_4:50380019-50380038 | None:intergenic | 45.0% | |
| !! | ACTCTCTTTTGGCTGAGGTT+GGG | + | chr3_4:50380032-50380051 | None:intergenic | 45.0% |
| !! | TACTCTCTTTTGGCTGAGGT+TGG | + | chr3_4:50380033-50380052 | None:intergenic | 45.0% |
| !! | GTCTTACTCTCTTTTGGCTG+AGG | + | chr3_4:50380037-50380056 | None:intergenic | 45.0% |
| !! | TTTGTGGGTTGGTTGTCGTT+GGG | + | chr3_4:50380072-50380091 | None:intergenic | 45.0% |
| TCGCAAGTCCCATTATGTGT+TGG | + | chr3_4:50380122-50380141 | None:intergenic | 45.0% | |
| TGCGATTACTCTTGCTCCAA+TGG | - | chr3_4:50380137-50380156 | Msa0505080:CDS | 45.0% | |
| CTAATCTTGAGCGATGCCAT+TGG | + | chr3_4:50380156-50380175 | None:intergenic | 45.0% | |
| GCATCGCTCAAGATTAGAAG+AGG | - | chr3_4:50380159-50380178 | Msa0505080:CDS | 45.0% | |
| TCAAACATGGGATGAGCTTG+AGG | - | chr3_4:50380258-50380277 | Msa0505080:CDS | 45.0% | |
| GGTATCCGACTATGTCATCA+TGG | + | chr3_4:50380515-50380534 | None:intergenic | 45.0% | |
| !!! | AACATAGGGAGTTTTGGAGC+TGG | - | chr3_4:50380603-50380622 | Msa0505080:intron | 45.0% |
| GTTGACCATACAAGCGCTAT+AGG | + | chr3_4:50380632-50380651 | None:intergenic | 45.0% | |
| TATGGTCAACCACAACCCTA+TGG | - | chr3_4:50380642-50380661 | Msa0505080:intron | 45.0% | |
| TCACGAATTGGGAAGCCATA+GGG | + | chr3_4:50380660-50380679 | None:intergenic | 45.0% | |
| CTTGGTGAGAGTCACGAATT+GGG | + | chr3_4:50380671-50380690 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGTCACGAAT+TGG | + | chr3_4:50380672-50380691 | None:intergenic | 45.0% | |
| GCAAGAAGCTGCTAACTTCT+TGG | + | chr3_4:50380689-50380708 | None:intergenic | 45.0% | |
| CACATGCTTCGACTCCACAT+AGG | + | chr3_4:50378676-50378695 | None:intergenic | 50.0% | |
| GCAAAACAACCCTCGAGTAG+AGG | - | chr3_4:50378709-50378728 | Msa0505080:intron | 50.0% | |
| ACAACCCTCGAGTAGAGGTT+TGG | - | chr3_4:50378714-50378733 | Msa0505080:intron | 50.0% | |
| ATGGCCAAACCTCTACTCGA+GGG | + | chr3_4:50378721-50378740 | None:intergenic | 50.0% | |
| GAGGTTTGGCCATCAGATTC+AGG | - | chr3_4:50378728-50378747 | Msa0505080:intron | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | - | chr3_4:50378730-50378749 | Msa0505080:intron | 50.0% | |
| CTTCTGACCCCTGAATCTGA+TGG | + | chr3_4:50378740-50378759 | None:intergenic | 50.0% | |
| TGGATCAGGAGGTCTTCTTG+AGG | - | chr3_4:50378813-50378832 | Msa0505080:intron | 50.0% | |
| GCAGTTGAAGAAGCAAAGGG+AGG | - | chr3_4:50378859-50378878 | Msa0505080:intron | 50.0% | |
| ! | CTCCCTCCGGTCCTTTTTAT+AGG | + | chr3_4:50379225-50379244 | None:intergenic | 50.0% |
| CCGGAGGGAGTAGTTATGAA+TGG | - | chr3_4:50379235-50379254 | Msa0505080:intron | 50.0% | |
| GGTTGGGTGATCCTAATAGG+AGG | + | chr3_4:50380016-50380035 | None:intergenic | 50.0% | |
| !! | TTGTGGGTTGGTTGTCGTTG+GGG | + | chr3_4:50380071-50380090 | None:intergenic | 50.0% |
| !! | GTTTGTGGGTTGGTTGTCGT+TGG | + | chr3_4:50380073-50380092 | None:intergenic | 50.0% |
| GGTTGAGCTCGTCTATATCG+TGG | + | chr3_4:50380423-50380442 | None:intergenic | 50.0% | |
| ! | TAGGGCACTCAACCTTTGAG+TGG | + | chr3_4:50380458-50380477 | None:intergenic | 50.0% |
| GATGACATAGTCGGATACCG+AGG | - | chr3_4:50380516-50380535 | Msa0505080:intron | 50.0% | |
| GGATGCCTATAGCGCTTGTA+TGG | - | chr3_4:50380624-50380643 | Msa0505080:intron | 50.0% | |
| ATTGGGAAGCCATAGGGTTG+TGG | + | chr3_4:50380654-50380673 | None:intergenic | 50.0% | |
| GTCACGAATTGGGAAGCCAT+AGG | + | chr3_4:50380661-50380680 | None:intergenic | 50.0% | |
| CACATGCTTCGACTCCACAT+AGG | + | chr3_4:50378676-50378695 | None:intergenic | 50.0% | |
| GCAAAACAACCCTCGAGTAG+AGG | - | chr3_4:50378709-50378728 | Msa0505080:intron | 50.0% | |
| ACAACCCTCGAGTAGAGGTT+TGG | - | chr3_4:50378714-50378733 | Msa0505080:intron | 50.0% | |
| ATGGCCAAACCTCTACTCGA+GGG | + | chr3_4:50378721-50378740 | None:intergenic | 50.0% | |
| GAGGTTTGGCCATCAGATTC+AGG | - | chr3_4:50378728-50378747 | Msa0505080:intron | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | - | chr3_4:50378730-50378749 | Msa0505080:intron | 50.0% | |
| CTTCTGACCCCTGAATCTGA+TGG | + | chr3_4:50378740-50378759 | None:intergenic | 50.0% | |
| TGGATCAGGAGGTCTTCTTG+AGG | - | chr3_4:50378813-50378832 | Msa0505080:intron | 50.0% | |
| GCAGTTGAAGAAGCAAAGGG+AGG | - | chr3_4:50378859-50378878 | Msa0505080:intron | 50.0% | |
| ! | CTCCCTCCGGTCCTTTTTAT+AGG | + | chr3_4:50379225-50379244 | None:intergenic | 50.0% |
| CCGGAGGGAGTAGTTATGAA+TGG | - | chr3_4:50379235-50379254 | Msa0505080:intron | 50.0% | |
| GGTTGGGTGATCCTAATAGG+AGG | + | chr3_4:50380016-50380035 | None:intergenic | 50.0% | |
| !! | TTGTGGGTTGGTTGTCGTTG+GGG | + | chr3_4:50380071-50380090 | None:intergenic | 50.0% |
| !! | GTTTGTGGGTTGGTTGTCGT+TGG | + | chr3_4:50380073-50380092 | None:intergenic | 50.0% |
| GGTTGAGCTCGTCTATATCG+TGG | + | chr3_4:50380423-50380442 | None:intergenic | 50.0% | |
| ! | TAGGGCACTCAACCTTTGAG+TGG | + | chr3_4:50380458-50380477 | None:intergenic | 50.0% |
| GATGACATAGTCGGATACCG+AGG | - | chr3_4:50380516-50380535 | Msa0505080:intron | 50.0% | |
| GGATGCCTATAGCGCTTGTA+TGG | - | chr3_4:50380624-50380643 | Msa0505080:intron | 50.0% | |
| ATTGGGAAGCCATAGGGTTG+TGG | + | chr3_4:50380654-50380673 | None:intergenic | 50.0% | |
| GTCACGAATTGGGAAGCCAT+AGG | + | chr3_4:50380661-50380680 | None:intergenic | 50.0% | |
| GATGGCCAAACCTCTACTCG+AGG | + | chr3_4:50378722-50378741 | None:intergenic | 55.0% | |
| AGAGGAGGTTGGAAATGGGG+TGG | - | chr3_4:50379048-50379067 | Msa0505080:intron | 55.0% | |
| GAGGAGGTTGGAAATGGGGT+GGG | - | chr3_4:50379049-50379068 | Msa0505080:intron | 55.0% | |
| GATGGCCAAACCTCTACTCG+AGG | + | chr3_4:50378722-50378741 | None:intergenic | 55.0% | |
| AGAGGAGGTTGGAAATGGGG+TGG | - | chr3_4:50379048-50379067 | Msa0505080:intron | 55.0% | |
| GAGGAGGTTGGAAATGGGGT+GGG | - | chr3_4:50379049-50379068 | Msa0505080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 50378336 | 50380777 | 50378336 | ID=Msa0505080;Name=Msa0505080 |
| chr3_4 | mRNA | 50378336 | 50380777 | 50378336 | ID=Msa0505080-mRNA-1;Parent=Msa0505080;Name=Msa0505080-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.66|1|0.66|3|0|204 |
| chr3_4 | exon | 50380699 | 50380777 | 50380699 | ID=Msa0505080-mRNA-1:exon:10877;Parent=Msa0505080-mRNA-1 |
| chr3_4 | exon | 50380104 | 50380471 | 50380104 | ID=Msa0505080-mRNA-1:exon:10876;Parent=Msa0505080-mRNA-1 |
| chr3_4 | exon | 50378336 | 50378503 | 50378336 | ID=Msa0505080-mRNA-1:exon:10875;Parent=Msa0505080-mRNA-1 |
| chr3_4 | CDS | 50380699 | 50380777 | 50380699 | ID=Msa0505080-mRNA-1:cds;Parent=Msa0505080-mRNA-1 |
| chr3_4 | CDS | 50380104 | 50380471 | 50380104 | ID=Msa0505080-mRNA-1:cds;Parent=Msa0505080-mRNA-1 |
| chr3_4 | CDS | 50378336 | 50378503 | 50378336 | ID=Msa0505080-mRNA-1:cds;Parent=Msa0505080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
