Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184420 | A0A072TSG0 | 87.379 | 103 | 10 | 1 | 1 | 100 | 19 | 121 | 1.58e-33 | 129 |
| Msa1184420 | A0A072TSG0 | 96.875 | 32 | 1 | 0 | 101 | 132 | 256 | 287 | 2.03e-12 | 72.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099210 | Msa1184420 | 0.810596 | 1.065724e-50 | -8.615850e-47 |
| Msa0107580 | Msa1184420 | 0.815473 | 9.078608e-52 | -8.615850e-47 |
| Msa0604350 | Msa1184420 | 0.816438 | 5.529820e-52 | -8.615850e-47 |
| Msa0645300 | Msa1184420 | 0.805408 | 1.354577e-49 | -8.615850e-47 |
| Msa0650630 | Msa1184420 | 0.803761 | 2.987464e-49 | -8.615850e-47 |
| Msa0673450 | Msa1184420 | 0.810324 | 1.219748e-50 | -8.615850e-47 |
| Msa0701010 | Msa1184420 | 0.834355 | 3.144399e-56 | -8.615850e-47 |
| Msa0725850 | Msa1184420 | 0.814268 | 1.680004e-51 | -8.615850e-47 |
| Msa0726140 | Msa1184420 | 0.813257 | 2.804996e-51 | -8.615850e-47 |
| Msa0729800 | Msa1184420 | 0.813680 | 2.264522e-51 | -8.615850e-47 |
| Msa0731560 | Msa1184420 | 0.815220 | 1.033786e-51 | -8.615850e-47 |
| Msa0733290 | Msa1184420 | 0.802421 | 5.654676e-49 | -8.615850e-47 |
| Msa0743810 | Msa1184420 | 0.811032 | 8.576937e-51 | -8.615850e-47 |
| Msa0745060 | Msa1184420 | 0.807283 | 5.450852e-50 | -8.615850e-47 |
| Msa0766630 | Msa1184420 | 0.823399 | 1.414738e-53 | -8.615850e-47 |
| Msa0767720 | Msa1184420 | 0.804543 | 2.053614e-49 | -8.615850e-47 |
| Msa0768290 | Msa1184420 | 0.824502 | 7.794762e-54 | -8.615850e-47 |
| Msa0768370 | Msa1184420 | 0.838582 | 2.640614e-57 | -8.615850e-47 |
| Msa0783160 | Msa1184420 | 0.816694 | 4.846512e-52 | -8.615850e-47 |
| Msa0784290 | Msa1184420 | 0.819063 | 1.413484e-52 | -8.615850e-47 |
| Msa0784300 | Msa1184420 | 0.816012 | 6.886094e-52 | -8.615850e-47 |
| Msa0808010 | Msa1184420 | 0.821835 | 3.268162e-53 | -8.615850e-47 |
| Msa0808020 | Msa1184420 | 0.816335 | 5.830048e-52 | -8.615850e-47 |
| Msa0824590 | Msa1184420 | 0.822643 | 2.122607e-53 | -8.615850e-47 |
| Msa0825860 | Msa1184420 | 0.814204 | 1.735492e-51 | -8.615850e-47 |
| Msa0828940 | Msa1184420 | 0.808316 | 3.288663e-50 | -8.615850e-47 |
| Msa0833290 | Msa1184420 | 0.831843 | 1.326651e-55 | -8.615850e-47 |
| Msa0135660 | Msa1184420 | 0.805775 | 1.134320e-49 | -8.615850e-47 |
| Msa0153910 | Msa1184420 | 0.811680 | 6.201379e-51 | -8.615850e-47 |
| Msa0158480 | Msa1184420 | 0.805188 | 1.505689e-49 | -8.615850e-47 |
| Msa0180500 | Msa1184420 | 0.818851 | 1.579590e-52 | -8.615850e-47 |
| Msa0198910 | Msa1184420 | 0.809155 | 2.176210e-50 | -8.615850e-47 |
| Msa0208090 | Msa1184420 | 0.809888 | 1.514489e-50 | -8.615850e-47 |
| Msa0223260 | Msa1184420 | 0.813166 | 2.937387e-51 | -8.615850e-47 |
| Msa0227480 | Msa1184420 | 0.803165 | 3.971548e-49 | -8.615850e-47 |
| Msa0231000 | Msa1184420 | 0.837954 | 3.831066e-57 | -8.615850e-47 |
| Msa0232850 | Msa1184420 | 0.823361 | 1.443747e-53 | -8.615850e-47 |
| Msa0233300 | Msa1184420 | 0.802064 | 6.699554e-49 | -8.615850e-47 |
| Msa0365500 | Msa1184420 | 0.831199 | 1.911160e-55 | -8.615850e-47 |
| Msa0384800 | Msa1184420 | 0.810134 | 1.340717e-50 | -8.615850e-47 |
| Msa0384890 | Msa1184420 | 0.831544 | 1.571901e-55 | -8.615850e-47 |
| Msa0414410 | Msa1184420 | 0.822422 | 2.389140e-53 | -8.615850e-47 |
| Msa0414420 | Msa1184420 | 0.818548 | 1.850685e-52 | -8.615850e-47 |
| Msa0424320 | Msa1184420 | 0.841942 | 3.499551e-58 | -8.615850e-47 |
| Msa0425790 | Msa1184420 | 0.806714 | 7.193849e-50 | -8.615850e-47 |
| Msa0430420 | Msa1184420 | 0.812562 | 3.983879e-51 | -8.615850e-47 |
| Msa0431690 | Msa1184420 | 0.805632 | 1.215760e-49 | -8.615850e-47 |
| Msa0435230 | Msa1184420 | 0.825960 | 3.524228e-54 | -8.615850e-47 |
| Msa0436780 | Msa1184420 | 0.836270 | 1.032536e-56 | -8.615850e-47 |
| Msa0450000 | Msa1184420 | 0.822622 | 2.146824e-53 | -8.615850e-47 |
| Msa0452620 | Msa1184420 | 0.812525 | 4.057923e-51 | -8.615850e-47 |
| Msa0452900 | Msa1184420 | 0.827180 | 1.803821e-54 | -8.615850e-47 |
| Msa0453120 | Msa1184420 | 0.821938 | 3.094295e-53 | -8.615850e-47 |
| Msa0479340 | Msa1184420 | 0.842823 | 2.042959e-58 | -8.615850e-47 |
| Msa0991830 | Msa1184420 | 0.817666 | 2.929506e-52 | -8.615850e-47 |
| Msa0998690 | Msa1184420 | 0.804725 | 1.881798e-49 | -8.615850e-47 |
| Msa1000860 | Msa1184420 | 0.821618 | 3.668231e-53 | -8.615850e-47 |
| Msa1000880 | Msa1184420 | 0.816835 | 4.505890e-52 | -8.615850e-47 |
| Msa1000890 | Msa1184420 | 0.849529 | 3.049699e-60 | -8.615850e-47 |
| Msa1000900 | Msa1184420 | 0.861348 | 1.092961e-63 | -8.615850e-47 |
| Msa1014540 | Msa1184420 | 0.832718 | 8.054013e-56 | -8.615850e-47 |
| Msa1016280 | Msa1184420 | 0.817105 | 3.918977e-52 | -8.615850e-47 |
| Msa1023050 | Msa1184420 | 0.821801 | 3.328255e-53 | -8.615850e-47 |
| Msa1025360 | Msa1184420 | 0.831030 | 2.103281e-55 | -8.615850e-47 |
| Msa1025370 | Msa1184420 | 0.830136 | 3.481408e-55 | -8.615850e-47 |
| Msa1028230 | Msa1184420 | 0.819203 | 1.313945e-52 | -8.615850e-47 |
| Msa1030970 | Msa1184420 | 0.806176 | 9.342615e-50 | -8.615850e-47 |
| Msa1044830 | Msa1184420 | 0.829184 | 5.932810e-55 | -8.615850e-47 |
| Msa1044840 | Msa1184420 | 0.832229 | 1.064756e-55 | -8.615850e-47 |
| Msa1060840 | Msa1184420 | 0.839976 | 1.147707e-57 | -8.615850e-47 |
| Msa1085740 | Msa1184420 | 0.808025 | 3.793311e-50 | -8.615850e-47 |
| Msa1091900 | Msa1184420 | 0.800070 | 1.712664e-48 | -8.615850e-47 |
| Msa1092990 | Msa1184420 | 0.816414 | 5.599648e-52 | -8.615850e-47 |
| Msa1100980 | Msa1184420 | 0.821842 | 3.255960e-53 | -8.615850e-47 |
| Msa0251320 | Msa1184420 | 0.831530 | 1.584743e-55 | -8.615850e-47 |
| Msa0251640 | Msa1184420 | 0.822916 | 1.833503e-53 | -8.615850e-47 |
| Msa0267000 | Msa1184420 | 0.822855 | 1.894806e-53 | -8.615850e-47 |
| Msa0267010 | Msa1184420 | 0.823087 | 1.673151e-53 | -8.615850e-47 |
| Msa0270520 | Msa1184420 | 0.802218 | 6.226090e-49 | -8.615850e-47 |
| Msa0360510 | Msa1184420 | 0.816780 | 4.635692e-52 | -8.615850e-47 |
| Msa1109440 | Msa1184420 | 0.852367 | 4.836231e-61 | -8.615850e-47 |
| Msa1121200 | Msa1184420 | 0.815215 | 1.036026e-51 | -8.615850e-47 |
| Msa1121490 | Msa1184420 | 0.806324 | 8.693976e-50 | -8.615850e-47 |
| Msa1136090 | Msa1184420 | 0.806965 | 6.367218e-50 | -8.615850e-47 |
| Msa1137570 | Msa1184420 | 0.804820 | 1.798182e-49 | -8.615850e-47 |
| Msa1149360 | Msa1184420 | 0.858151 | 1.003070e-62 | -8.615850e-47 |
| Msa1150370 | Msa1184420 | 0.812213 | 4.747553e-51 | -8.615850e-47 |
| Msa1156020 | Msa1184420 | 0.808991 | 2.358916e-50 | -8.615850e-47 |
| Msa1162550 | Msa1184420 | -0.800219 | 1.597356e-48 | -8.615850e-47 |
| Msa1173920 | Msa1184420 | 0.829642 | 4.591124e-55 | -8.615850e-47 |
| Msa1174910 | Msa1184420 | 0.824374 | 8.358085e-54 | -8.615850e-47 |
| Msa1184420 | Msa1187940 | 0.804106 | 2.533034e-49 | -8.615850e-47 |
| Msa1184420 | Msa1192640 | 0.825111 | 5.601544e-54 | -8.615850e-47 |
| Msa1184420 | Msa1227730 | 0.842599 | 2.343795e-58 | -8.615850e-47 |
| Msa1184420 | Msa1230430 | 0.819980 | 8.734879e-53 | -8.615850e-47 |
| Msa1184420 | Msa1269670 | 0.814984 | 1.166423e-51 | -8.615850e-47 |
| Msa1184420 | Msa1270230 | 0.803026 | 4.241452e-49 | -8.615850e-47 |
| Msa1184420 | Msa1270240 | 0.808913 | 2.451187e-50 | -8.615850e-47 |
| Msa1184420 | Msa1270270 | 0.801992 | 6.930625e-49 | -8.615850e-47 |
| Msa1184420 | Msa1276890 | 0.817972 | 2.499335e-52 | -8.615850e-47 |
| Msa1184420 | Msa1283330 | 0.807563 | 4.755094e-50 | -8.615850e-47 |
| Msa1184420 | Msa1284680 | 0.817523 | 3.155593e-52 | -8.615850e-47 |
| Msa1184420 | Msa1285930 | 0.837089 | 6.386280e-57 | -8.615850e-47 |
| Msa1184420 | Msa1287800 | 0.807402 | 5.144726e-50 | -8.615850e-47 |
| Msa1184420 | Msa1287810 | 0.824253 | 8.924144e-54 | -8.615850e-47 |
| Msa1184420 | Msa1289430 | 0.800286 | 1.547693e-48 | -8.615850e-47 |
| Msa1184420 | Msa1297210 | 0.807485 | 4.939695e-50 | -8.615850e-47 |
| Msa1184420 | Msa1307890 | 0.804817 | 1.800791e-49 | -8.615850e-47 |
| Msa1184420 | Msa1340590 | 0.819498 | 1.125336e-52 | -8.615850e-47 |
| Msa1184420 | Msa1366810 | 0.808645 | 2.796783e-50 | -8.615850e-47 |
| Msa1184420 | Msa1369430 | 0.874224 | 7.983185e-68 | -8.615850e-47 |
| Msa1184420 | Msa1397580 | 0.821480 | 3.949171e-53 | -8.615850e-47 |
| Msa1184420 | Msa1402790 | 0.800653 | 1.303098e-48 | -8.615850e-47 |
| Msa1184420 | Msa1404000 | 0.812274 | 4.603431e-51 | -8.615850e-47 |
| Msa1184420 | Msa1404020 | 0.802512 | 5.417678e-49 | -8.615850e-47 |
| Msa1184420 | Msa1410680 | 0.801552 | 8.533101e-49 | -8.615850e-47 |
| Msa1184420 | Msa1415310 | 0.826042 | 3.369882e-54 | -8.615850e-47 |
| Msa1184420 | Msa1433120 | 0.804641 | 1.959313e-49 | -8.615850e-47 |
| Msa1184420 | Msa1451570 | 0.801639 | 8.187194e-49 | -8.615850e-47 |
| Msa1184420 | Msa1455720 | 0.809511 | 1.824677e-50 | -8.615850e-47 |
| Msa1184420 | Msa1458750 | 0.807211 | 5.645917e-50 | -8.615850e-47 |
| Msa0491590 | Msa1184420 | 0.820647 | 6.140647e-53 | -8.615850e-47 |
| Msa0493000 | Msa1184420 | 0.807954 | 3.927780e-50 | -8.615850e-47 |
| Msa0505080 | Msa1184420 | 0.801832 | 7.474937e-49 | -8.615850e-47 |
| Msa0523940 | Msa1184420 | 0.838395 | 2.950424e-57 | -8.615850e-47 |
| Msa0529040 | Msa1184420 | 0.838254 | 3.207939e-57 | -8.615850e-47 |
| Msa0534540 | Msa1184420 | 0.809669 | 1.688079e-50 | -8.615850e-47 |
| Msa0564890 | Msa1184420 | 0.810771 | 9.767041e-51 | -8.615850e-47 |
| Msa0585230 | Msa1184420 | 0.814504 | 1.490069e-51 | -8.615850e-47 |
| Msa0598780 | Msa1184420 | 0.822287 | 2.568289e-53 | -8.615850e-47 |
| Msa0844490 | Msa1184420 | 0.847841 | 8.955906e-60 | -8.615850e-47 |
| Msa0846210 | Msa1184420 | 0.810345 | 1.207159e-50 | -8.615850e-47 |
| Msa0846330 | Msa1184420 | 0.805526 | 1.279387e-49 | -8.615850e-47 |
| Msa0858980 | Msa1184420 | 0.812131 | 4.946573e-51 | -8.615850e-47 |
| Msa0864070 | Msa1184420 | 0.815628 | 8.388488e-52 | -8.615850e-47 |
| Msa0877250 | Msa1184420 | 0.852720 | 3.835994e-61 | -8.615850e-47 |
| Msa0885290 | Msa1184420 | 0.809115 | 2.219264e-50 | -8.615850e-47 |
| Msa0888370 | Msa1184420 | 0.823350 | 1.452565e-53 | -8.615850e-47 |
| Msa0888420 | Msa1184420 | 0.802275 | 6.061722e-49 | -8.615850e-47 |
| Msa0899430 | Msa1184420 | 0.838462 | 2.834304e-57 | -8.615850e-47 |
| Msa0899450 | Msa1184420 | 0.853235 | 2.732786e-61 | -8.615850e-47 |
| Msa0907260 | Msa1184420 | 0.829912 | 3.945994e-55 | -8.615850e-47 |
| Msa0914760 | Msa1184420 | 0.825793 | 3.861766e-54 | -8.615850e-47 |
| Msa0924050 | Msa1184420 | 0.801977 | 6.978239e-49 | -8.615850e-47 |
| Msa0927380 | Msa1184420 | 0.822445 | 2.359329e-53 | -8.615850e-47 |
| Msa0936300 | Msa1184420 | 0.805980 | 1.027383e-49 | -8.615850e-47 |
| Msa0952720 | Msa1184420 | 0.832385 | 9.742881e-56 | -8.615850e-47 |
| Msa0953120 | Msa1184420 | 0.855170 | 7.549716e-62 | -8.615850e-47 |
| Msa0956270 | Msa1184420 | 0.814024 | 1.901545e-51 | -8.615850e-47 |
| Msa0958550 | Msa1184420 | 0.848019 | 7.999782e-60 | -8.615850e-47 |
| Msa0964900 | Msa1184420 | 0.813746 | 2.190245e-51 | -8.615850e-47 |
| Msa0966750 | Msa1184420 | 0.809912 | 1.496781e-50 | -8.615850e-47 |
| Msa0973100 | Msa1184420 | 0.800730 | 1.256377e-48 | -8.615850e-47 |
| Msa0974080 | Msa1184420 | 0.812465 | 4.181381e-51 | -8.615850e-47 |
| Msa0974440 | Msa1184420 | 0.803112 | 4.071756e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184420 | MtrunA17_Chr2g0320884 | 75.472 | 106 | 16 | 3 | 5 | 100 | 165 | 270 | 1.27e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAGGCCTCTTCTTTCTT+TGG | 0.167682 | 8_1:-20110672 | None:intergenic |
| GAAGATTGTGATGATGAAAT+TGG | 0.327410 | 8_1:+20110209 | Msa1184420:CDS |
| CACAGATGAGAGGGGCCTTC+AGG | 0.337161 | 8_1:+20111617 | Msa1184420:CDS |
| AATGCCACTCTTGAGAAAAC+TGG | 0.395513 | 8_1:+20110733 | Msa1184420:CDS |
| GCAAGGACAAAGGGTGAGAC+AGG | 0.405111 | 8_1:+20112188 | Msa1184420:CDS |
| TTGAAAGATGCACAGATGAG+AGG | 0.482860 | 8_1:+20111607 | Msa1184420:CDS |
| ATTGTCAAAGCAAGGACAAA+GGG | 0.516938 | 8_1:+20112179 | Msa1184420:CDS |
| TGTGTCATTACCTTCTTCAC+AGG | 0.526680 | 8_1:-20110561 | None:intergenic |
| TGAAAGATGCACAGATGAGA+GGG | 0.533085 | 8_1:+20111608 | Msa1184420:CDS |
| GGAAGAGACTCCTGTGAAGA+AGG | 0.538391 | 8_1:+20110551 | Msa1184420:CDS |
| TGTGAAGGTTGTTGATCTAA+AGG | 0.545160 | 8_1:+20110175 | Msa1184420:CDS |
| TGAGAGTGATGAAGATGACG+AGG | 0.555243 | 8_1:+20110530 | Msa1184420:CDS |
| AATTGTCAAAGCAAGGACAA+AGG | 0.597621 | 8_1:+20112178 | Msa1184420:CDS |
| AGGTGGACCAAAGAAAGAAG+AGG | 0.653905 | 8_1:+20110665 | Msa1184420:intron |
| TGCACCTGCAAAACATGTGA+AGG | 0.659451 | 8_1:+20110160 | Msa1184420:CDS |
| AATTGGAAGCTCTGATGATG+AGG | 0.661842 | 8_1:+20110226 | Msa1184420:CDS |
| GAAAGATGCACAGATGAGAG+GGG | 0.702096 | 8_1:+20111609 | Msa1184420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATCTTTTTTATTAAAAAA+TGG | - | chr8_1:20111396-20111415 | None:intergenic | 10.0% |
| !!! | TTATTTTAATAAATCTTGAC+AGG | + | chr8_1:20109377-20109396 | Msa1184420:intron | 15.0% |
| !!! | GTTTTCTTATTTTAATTTTC+AGG | + | chr8_1:20109471-20109490 | Msa1184420:intron | 15.0% |
| !! | TTACAATATATAATACAACT+TGG | - | chr8_1:20110764-20110783 | None:intergenic | 15.0% |
| !! | ATAAAAAAATATATATTGCC+TGG | - | chr8_1:20111337-20111356 | None:intergenic | 15.0% |
| !!! | ACTATTGTAAACTGAATTTT+AGG | + | chr8_1:20109074-20109093 | Msa1184420:intron | 20.0% |
| !! | TAGAAATGAAATAAGAACAT+TGG | + | chr8_1:20109441-20109460 | Msa1184420:intron | 20.0% |
| !! | ATCTGATAAAATTTGATATG+TGG | + | chr8_1:20109599-20109618 | Msa1184420:intron | 20.0% |
| !! | TTAATCTGTATTGAAATTCT+TGG | + | chr8_1:20110024-20110043 | Msa1184420:intron | 20.0% |
| !! | AATTTAGTAGCTTAGTAATT+TGG | + | chr8_1:20110058-20110077 | Msa1184420:intron | 20.0% |
| !!! | ATAAATTTGTTAAAAGTGCT+AGG | + | chr8_1:20110348-20110367 | Msa1184420:intron | 20.0% |
| !!! | TAAATTTGTTAAAAGTGCTA+GGG | + | chr8_1:20110349-20110368 | Msa1184420:intron | 20.0% |
| !!! | TTAGTATCTTTTTGTCTAAT+TGG | + | chr8_1:20110794-20110813 | Msa1184420:intron | 20.0% |
| !! | AATAAAATTGTAAAACACGA+AGG | - | chr8_1:20110962-20110981 | None:intergenic | 20.0% |
| !!! | TGTTGTGTCTTTATTTTAAT+AGG | + | chr8_1:20111369-20111388 | Msa1184420:intron | 20.0% |
| !! | GTATTGTTTACATGATATTT+AGG | - | chr8_1:20111511-20111530 | None:intergenic | 20.0% |
| !!! | TTTTTCCGAAATTATATGAT+CGG | + | chr8_1:20111570-20111589 | Msa1184420:intron | 20.0% |
| !!! | AAAGTTTTTCTTATCACTTT+AGG | + | chr8_1:20111824-20111843 | Msa1184420:intron | 20.0% |
| !! | TCACTTAGTATTTAAATTTG+CGG | + | chr8_1:20112099-20112118 | Msa1184420:intron | 20.0% |
| !!! | TATTTTTGTCTACTTTGCAA+TGG | - | chr8_1:20108797-20108816 | None:intergenic | 25.0% |
| !!! | ATCTGCATATTTCTGAAATT+AGG | + | chr8_1:20109708-20109727 | Msa1184420:intron | 25.0% |
| !! | TAATCTTAGCAAGACTTTTT+AGG | + | chr8_1:20109893-20109912 | Msa1184420:intron | 25.0% |
| !!! | TTTTTAGCATCAGCTTTTTT+AGG | - | chr8_1:20110137-20110156 | None:intergenic | 25.0% |
| ! | CTTCGTATATATTAGATTGA+AGG | - | chr8_1:20110318-20110337 | None:intergenic | 25.0% |
| !!! | AAATTTGTTAAAAGTGCTAG+GGG | + | chr8_1:20110350-20110369 | Msa1184420:intron | 25.0% |
| ! | TATATTTACTGAAGATGAGA+AGG | - | chr8_1:20110410-20110429 | None:intergenic | 25.0% |
| !! | TTGATCTTGATAATTGTAGA+TGG | + | chr8_1:20110476-20110495 | Msa1184420:intron | 25.0% |
| !!! | CTTTAGAACATTATCTTCAA+GGG | + | chr8_1:20110853-20110872 | Msa1184420:intron | 25.0% |
| ! | AAAAATGGACATAGATTATC+AGG | + | chr8_1:20110919-20110938 | Msa1184420:intron | 25.0% |
| ! | TTCTTGATGTTATCAAATCA+TGG | + | chr8_1:20111779-20111798 | Msa1184420:intron | 25.0% |
| !! | TTTCTTATCACTTTAGGTTT+AGG | + | chr8_1:20111830-20111849 | Msa1184420:intron | 25.0% |
| !!! | ACGCATGATATGTTTATTTT+TGG | + | chr8_1:20112021-20112040 | Msa1184420:intron | 25.0% |
| ! | TAGTATTTAAATTTGCGGTT+TGG | + | chr8_1:20112104-20112123 | Msa1184420:intron | 25.0% |
| AAATTCTGCAATTTGCAGAT+TGG | + | chr8_1:20108708-20108727 | Msa1184420:intron | 30.0% | |
| CTATGCTCAATTTACTAACA+GGG | - | chr8_1:20108737-20108756 | None:intergenic | 30.0% | |
| ACTATGCTCAATTTACTAAC+AGG | - | chr8_1:20108738-20108757 | None:intergenic | 30.0% | |
| CTTGCATATATACAGAAACA+GGG | - | chr8_1:20108903-20108922 | None:intergenic | 30.0% | |
| ACTTGCATATATACAGAAAC+AGG | - | chr8_1:20108904-20108923 | None:intergenic | 30.0% | |
| TATACATTCTAAGCTTTCCA+GGG | + | chr8_1:20108986-20109005 | Msa1184420:intron | 30.0% | |
| GAATGTTCGTTTACTCAATT+TGG | + | chr8_1:20109008-20109027 | Msa1184420:intron | 30.0% | |
| !!! | TGTAAACTGAATTTTAGGAC+TGG | + | chr8_1:20109079-20109098 | Msa1184420:intron | 30.0% |
| GGTAGAACTATATGAATACA+AGG | + | chr8_1:20109105-20109124 | Msa1184420:intron | 30.0% | |
| !!! | TTCAGGTTGAAGATTTTTGT+TGG | + | chr8_1:20109488-20109507 | Msa1184420:intron | 30.0% |
| TGAATAAAAACTTCATCCAG+TGG | + | chr8_1:20109554-20109573 | Msa1184420:intron | 30.0% | |
| CTTATTCATGTTAGAACACT+TGG | + | chr8_1:20109814-20109833 | Msa1184420:intron | 30.0% | |
| ! | ACATCTGTTTATGTGTTGAT+TGG | + | chr8_1:20109970-20109989 | Msa1184420:intron | 30.0% |
| !! | CATCTGTTTATGTGTTGATT+GGG | + | chr8_1:20109971-20109990 | Msa1184420:intron | 30.0% |
| CTTTCAGACATGAAAATTGA+AGG | + | chr8_1:20110103-20110122 | Msa1184420:intron | 30.0% | |
| ! | GAAGATTGTGATGATGAAAT+TGG | + | chr8_1:20110209-20110228 | Msa1184420:CDS | 30.0% |
| ! | TGCTATAAGTTGTCCATTTT+TGG | + | chr8_1:20110280-20110299 | Msa1184420:intron | 30.0% |
| !! | AATTTGTTAAAAGTGCTAGG+GGG | + | chr8_1:20110351-20110370 | Msa1184420:intron | 30.0% |
| !! | AACTTGTCATTCTGTTTTGA+AGG | + | chr8_1:20110645-20110664 | Msa1184420:intron | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+AGG | - | chr8_1:20110691-20110710 | None:intergenic | 30.0% |
| CCTTGAAGATAATGTTCTAA+AGG | - | chr8_1:20110855-20110874 | None:intergenic | 30.0% | |
| !! | CCTTTAGAACATTATCTTCA+AGG | + | chr8_1:20110852-20110871 | Msa1184420:intron | 30.0% |
| AGTATGTATGCAACCAAAAA+TGG | + | chr8_1:20110895-20110914 | Msa1184420:intron | 30.0% | |
| GTATGTATGCAACCAAAAAT+GGG | + | chr8_1:20110896-20110915 | Msa1184420:intron | 30.0% | |
| !! | ATGTCCATTTTTCCCATTTT+TGG | - | chr8_1:20110911-20110930 | None:intergenic | 30.0% |
| CTCATCCGATCATATAATTT+CGG | - | chr8_1:20111578-20111597 | None:intergenic | 30.0% | |
| TTCATGACATTAATACCTGA+AGG | - | chr8_1:20111635-20111654 | None:intergenic | 30.0% | |
| CACAGTAACAAAGATTATAG+AGG | - | chr8_1:20111737-20111756 | None:intergenic | 30.0% | |
| AAATCATGGTTACAACTTAC+AGG | + | chr8_1:20111793-20111812 | Msa1184420:intron | 30.0% | |
| ATGACAGATTAAGGTTCATA+TGG | - | chr8_1:20111858-20111877 | None:intergenic | 30.0% | |
| ! | GTTATATAGTGATTAGCTGT+TGG | + | chr8_1:20111917-20111936 | Msa1184420:intron | 30.0% |
| TTGGTAAAGATGTGCTATAA+AGG | + | chr8_1:20111936-20111955 | Msa1184420:intron | 30.0% | |
| TGGTAAAGATGTGCTATAAA+GGG | + | chr8_1:20111937-20111956 | Msa1184420:intron | 30.0% | |
| TTCTTGGTTTATAATGCTTC+AGG | + | chr8_1:20112145-20112164 | Msa1184420:intron | 30.0% | |
| TGGAAAAAATTGTCAAAGCA+AGG | + | chr8_1:20112171-20112190 | Msa1184420:CDS | 30.0% | |
| GAGTAAAGTATGAGCAATTC+AGG | + | chr8_1:20108853-20108872 | Msa1184420:intron | 35.0% | |
| CTATACATTCTAAGCTTTCC+AGG | + | chr8_1:20108985-20109004 | Msa1184420:intron | 35.0% | |
| !!! | ACTGAATTTTAGGACTGGTT+TGG | + | chr8_1:20109084-20109103 | Msa1184420:intron | 35.0% |
| TTTGATATGTGGTGTGATAC+AGG | + | chr8_1:20109610-20109629 | Msa1184420:intron | 35.0% | |
| AGTAATTTGGCAAGAGTAAC+TGG | + | chr8_1:20110071-20110090 | Msa1184420:intron | 35.0% | |
| TGTGAAGGTTGTTGATCTAA+AGG | + | chr8_1:20110175-20110194 | Msa1184420:CDS | 35.0% | |
| GACAGTATGACTACCAAAAA+TGG | - | chr8_1:20110296-20110315 | None:intergenic | 35.0% | |
| TCATATAGTGTTCTCAGCTT+AGG | + | chr8_1:20110377-20110396 | Msa1184420:intron | 35.0% | |
| !!! | TTGTCATTCTGTTTTGAAGG+TGG | + | chr8_1:20110648-20110667 | Msa1184420:intron | 35.0% |
| GCAACCAAAAATGGGAAAAA+TGG | + | chr8_1:20110904-20110923 | Msa1184420:intron | 35.0% | |
| ! | CAACAGCCATGACAATTTTA+AGG | + | chr8_1:20111285-20111304 | Msa1184420:intron | 35.0% |
| ATTTCATGTACTACGTTTGC+AGG | + | chr8_1:20111424-20111443 | Msa1184420:intron | 35.0% | |
| ACTTCAATTTCTGCATTAGC+TGG | + | chr8_1:20111535-20111554 | Msa1184420:intron | 35.0% | |
| CGAAATTATATGATCGGATG+AGG | + | chr8_1:20111576-20111595 | Msa1184420:intron | 35.0% | |
| TGATGCAGTATGACAGATTA+AGG | - | chr8_1:20111867-20111886 | None:intergenic | 35.0% | |
| ACACCGCTTCATAGAATTAT+GGG | + | chr8_1:20112050-20112069 | Msa1184420:intron | 35.0% | |
| TAGAATTATGGGACCAAGAT+AGG | + | chr8_1:20112061-20112080 | Msa1184420:intron | 35.0% | |
| AGAATTATGGGACCAAGATA+GGG | + | chr8_1:20112062-20112081 | Msa1184420:intron | 35.0% | |
| CTTTCTTGGTAAACTGTTCT+TGG | + | chr8_1:20112129-20112148 | Msa1184420:intron | 35.0% | |
| TTGGTTTATAATGCTTCAGG+AGG | + | chr8_1:20112148-20112167 | Msa1184420:intron | 35.0% | |
| AATTGTCAAAGCAAGGACAA+AGG | + | chr8_1:20112178-20112197 | Msa1184420:CDS | 35.0% | |
| ATTGTCAAAGCAAGGACAAA+GGG | + | chr8_1:20112179-20112198 | Msa1184420:CDS | 35.0% | |
| TTGAGTAAACGAACATTCCC+TGG | - | chr8_1:20109006-20109025 | None:intergenic | 40.0% | |
| AACTTCATCCAGTGGAAGTA+AGG | + | chr8_1:20109562-20109581 | Msa1184420:intron | 40.0% | |
| !! | ACAGGATGTTGCTTTAGTCT+TGG | + | chr8_1:20109628-20109647 | Msa1184420:intron | 40.0% |
| !! | TTTAGGAGAAGAGTGCTTTC+TGG | + | chr8_1:20109910-20109929 | Msa1184420:intron | 40.0% |
| !! | TTAGGAGAAGAGTGCTTTCT+GGG | + | chr8_1:20109911-20109930 | Msa1184420:intron | 40.0% |
| ! | ACAACCTTCACATGTTTTGC+AGG | - | chr8_1:20110167-20110186 | None:intergenic | 40.0% |
| ! | AATTGGAAGCTCTGATGATG+AGG | + | chr8_1:20110226-20110245 | Msa1184420:CDS | 40.0% |
| ! | TGTGTCATTACCTTCTTCAC+AGG | - | chr8_1:20110564-20110583 | None:intergenic | 40.0% |
| CATTAGGCCTCTTCTTTCTT+TGG | - | chr8_1:20110675-20110694 | None:intergenic | 40.0% | |
| AATGCCACTCTTGAGAAAAC+TGG | + | chr8_1:20110733-20110752 | Msa1184420:CDS | 40.0% | |
| !! | TTATCTTCAAGGGCATTGTG+AGG | + | chr8_1:20110863-20110882 | Msa1184420:intron | 40.0% |
| TCGAAGACAAATACCAACAC+CGG | - | chr8_1:20111176-20111195 | None:intergenic | 40.0% | |
| ! | AATGCTTCCATGCACAGTTT+TGG | - | chr8_1:20111224-20111243 | None:intergenic | 40.0% |
| ATGGCTGTTGAACATTCCAA+AGG | - | chr8_1:20111275-20111294 | None:intergenic | 40.0% | |
| !! | TGAGCATTGGATAGTAGTCA+AGG | + | chr8_1:20111457-20111476 | Msa1184420:intron | 40.0% |
| ATATGATCGGATGAGGATGA+AGG | + | chr8_1:20111583-20111602 | Msa1184420:intron | 40.0% | |
| TTGAAAGATGCACAGATGAG+AGG | + | chr8_1:20111607-20111626 | Msa1184420:CDS | 40.0% | |
| TGAAAGATGCACAGATGAGA+GGG | + | chr8_1:20111608-20111627 | Msa1184420:CDS | 40.0% | |
| GACACCGCTTCATAGAATTA+TGG | + | chr8_1:20112049-20112068 | Msa1184420:intron | 40.0% | |
| GGTCCCATAATTCTATGAAG+CGG | - | chr8_1:20112056-20112075 | None:intergenic | 40.0% | |
| GAATTATGGGACCAAGATAG+GGG | + | chr8_1:20112063-20112082 | Msa1184420:intron | 40.0% | |
| ATTACCAGAAACCCCTATCT+TGG | - | chr8_1:20112077-20112096 | None:intergenic | 40.0% | |
| GTTTATAATGCTTCAGGAGG+TGG | + | chr8_1:20112151-20112170 | Msa1184420:intron | 40.0% | |
| ATGCGCTGCATTGTGTAGTA+AGG | + | chr8_1:20109229-20109248 | Msa1184420:intron | 45.0% | |
| GTTGGAGTTGCTGCAAAATC+TGG | + | chr8_1:20109506-20109525 | Msa1184420:intron | 45.0% | |
| CACAATTGCCTTACTTCCAC+TGG | - | chr8_1:20109573-20109592 | None:intergenic | 45.0% | |
| !! | TAGGAGAAGAGTGCTTTCTG+GGG | + | chr8_1:20109912-20109931 | Msa1184420:intron | 45.0% |
| TGCACCTGCAAAACATGTGA+AGG | + | chr8_1:20110160-20110179 | Msa1184420:CDS | 45.0% | |
| TGAGAGTGATGAAGATGACG+AGG | + | chr8_1:20110530-20110549 | Msa1184420:CDS | 45.0% | |
| AGGTGGACCAAAGAAAGAAG+AGG | + | chr8_1:20110665-20110684 | Msa1184420:intron | 45.0% | |
| ! | CTCACCAGTTTTCTCAAGAG+TGG | - | chr8_1:20110740-20110759 | None:intergenic | 45.0% |
| TCAGCAATAACAGATGCTGC+AGG | - | chr8_1:20111067-20111086 | None:intergenic | 45.0% | |
| ATTTGAATCGACCACTCGCA+GGG | - | chr8_1:20111114-20111133 | None:intergenic | 45.0% | |
| ATTTGTCTTCGAGACGACGA+AGG | + | chr8_1:20111184-20111203 | Msa1184420:intron | 45.0% | |
| TTTGTCTTCGAGACGACGAA+GGG | + | chr8_1:20111185-20111204 | Msa1184420:intron | 45.0% | |
| GTTCTTGCCAAAACTGTGCA+TGG | + | chr8_1:20111214-20111233 | Msa1184420:intron | 45.0% | |
| GGGAGGCCTTAAAATTGTCA+TGG | - | chr8_1:20111294-20111313 | None:intergenic | 45.0% | |
| TTGCCCACCTGCACTATTAT+GGG | - | chr8_1:20111314-20111333 | None:intergenic | 45.0% | |
| AGGACAATAGCAGTGAGCAT+TGG | + | chr8_1:20111444-20111463 | Msa1184420:intron | 45.0% | |
| GAAAGATGCACAGATGAGAG+GGG | + | chr8_1:20111609-20111628 | Msa1184420:CDS | 45.0% | |
| !! | TTTGCGGTTTGGTGCTTTCT+TGG | + | chr8_1:20112115-20112134 | Msa1184420:intron | 45.0% |
| !!! | TATAAATATTATTTTATCTT+TGG | - | chr8_1:20108963-20108982 | None:intergenic | 5.0% |
| GGAGTTGCTGCAAAATCTGG+TGG | + | chr8_1:20109509-20109528 | Msa1184420:intron | 50.0% | |
| !! | AGGAGAAGAGTGCTTTCTGG+GGG | + | chr8_1:20109913-20109932 | Msa1184420:intron | 50.0% |
| GGAAGAGACTCCTGTGAAGA+AGG | + | chr8_1:20110551-20110570 | Msa1184420:CDS | 50.0% | |
| CTGAACCGCATCAGATCAAG+TGG | + | chr8_1:20111083-20111102 | Msa1184420:intron | 50.0% | |
| TTTGAATCGACCACTCGCAG+GGG | - | chr8_1:20111113-20111132 | None:intergenic | 50.0% | |
| CATTTGAATCGACCACTCGC+AGG | - | chr8_1:20111115-20111134 | None:intergenic | 50.0% | |
| TCTATCCCCCATAATCGCAC+CGG | + | chr8_1:20111154-20111173 | Msa1184420:intron | 50.0% | |
| ACCAACACCGGTGCGATTAT+GGG | - | chr8_1:20111164-20111183 | None:intergenic | 50.0% | |
| TACCAACACCGGTGCGATTA+TGG | - | chr8_1:20111165-20111184 | None:intergenic | 50.0% | |
| !! | ACTGTGCATGGAAGCATTGC+CGG | + | chr8_1:20111226-20111245 | Msa1184420:intron | 50.0% |
| CAAAGGCTAGACTACATCCC+AGG | - | chr8_1:20111258-20111277 | None:intergenic | 50.0% | |
| ! | CTGGGATGTAGTCTAGCCTT+TGG | + | chr8_1:20111256-20111275 | Msa1184420:intron | 50.0% |
| AAGGCCTCCCATAATAGTGC+AGG | + | chr8_1:20111304-20111323 | Msa1184420:intron | 50.0% | |
| CCTCCCATAATAGTGCAGGT+GGG | + | chr8_1:20111308-20111327 | Msa1184420:intron | 50.0% | |
| GTTGCCCACCTGCACTATTA+TGG | - | chr8_1:20111315-20111334 | None:intergenic | 50.0% | |
| ! | GAGTGCTTTCTGGGGGTCTA+AGG | + | chr8_1:20109920-20109939 | Msa1184420:intron | 55.0% |
| TTTGTGCAGCCTGCACCACA+CGG | + | chr8_1:20110998-20111017 | Msa1184420:intron | 55.0% | |
| ! | GGCTGCCACTTGATCTGATG+CGG | - | chr8_1:20111091-20111110 | None:intergenic | 55.0% |
| TTGAATCGACCACTCGCAGG+GGG | - | chr8_1:20111112-20111131 | None:intergenic | 55.0% | |
| CAACACCGGTGCGATTATGG+GGG | - | chr8_1:20111162-20111181 | None:intergenic | 55.0% | |
| CCAACACCGGTGCGATTATG+GGG | - | chr8_1:20111163-20111182 | None:intergenic | 55.0% | |
| ACTACATCCCAGGAGCGAAC+CGG | - | chr8_1:20111248-20111267 | None:intergenic | 55.0% | |
| GCCTCCCATAATAGTGCAGG+TGG | + | chr8_1:20111307-20111326 | Msa1184420:intron | 55.0% | |
| CCCACCTGCACTATTATGGG+AGG | - | chr8_1:20111311-20111330 | None:intergenic | 55.0% | |
| AATAGTGCAGGTGGGCAACC+AGG | + | chr8_1:20111316-20111335 | Msa1184420:intron | 55.0% | |
| GGGACCAAGATAGGGGTTTC+TGG | + | chr8_1:20112070-20112089 | Msa1184420:intron | 55.0% | |
| GCAAGGACAAAGGGTGAGAC+AGG | + | chr8_1:20112188-20112207 | Msa1184420:CDS | 55.0% | |
| GACTGTTGCTGCAGACCGTG+TGG | - | chr8_1:20111016-20111035 | None:intergenic | 60.0% | |
| ! | CCCCATAATCGCACCGGTGT+TGG | + | chr8_1:20111160-20111179 | Msa1184420:intron | 60.0% |
| !! | AAGCATTGCCGGTTCGCTCC+TGG | + | chr8_1:20111237-20111256 | Msa1184420:intron | 60.0% |
| !! | AGCATTGCCGGTTCGCTCCT+GGG | + | chr8_1:20111238-20111257 | Msa1184420:intron | 60.0% |
| CACAGATGAGAGGGGCCTTC+AGG | + | chr8_1:20111617-20111636 | Msa1184420:CDS | 60.0% | |
| TGCTGCAGACCGTGTGGTGC+AGG | - | chr8_1:20111010-20111029 | None:intergenic | 65.0% | |
| AAGTGGCAGCCCCCTGCGAG+TGG | + | chr8_1:20111100-20111119 | Msa1184420:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 20108590 | 20112227 | 20108590 | ID=Msa1184420;Name=Msa1184420 |
| chr8_1 | mRNA | 20108590 | 20112227 | 20108590 | ID=Msa1184420-mRNA-1;Parent=Msa1184420;Name=Msa1184420-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.71|0.33|0.42|7|0|132 |
| chr8_1 | exon | 20108590 | 20108595 | 20108590 | ID=Msa1184420-mRNA-1:exon:7778;Parent=Msa1184420-mRNA-1 |
| chr8_1 | exon | 20109309 | 20109314 | 20109309 | ID=Msa1184420-mRNA-1:exon:7779;Parent=Msa1184420-mRNA-1 |
| chr8_1 | exon | 20110125 | 20110247 | 20110125 | ID=Msa1184420-mRNA-1:exon:7780;Parent=Msa1184420-mRNA-1 |
| chr8_1 | exon | 20110495 | 20110572 | 20110495 | ID=Msa1184420-mRNA-1:exon:7781;Parent=Msa1184420-mRNA-1 |
| chr8_1 | exon | 20110667 | 20110754 | 20110667 | ID=Msa1184420-mRNA-1:exon:7782;Parent=Msa1184420-mRNA-1 |
| chr8_1 | exon | 20111605 | 20111638 | 20111605 | ID=Msa1184420-mRNA-1:exon:7783;Parent=Msa1184420-mRNA-1 |
| chr8_1 | exon | 20112167 | 20112227 | 20112167 | ID=Msa1184420-mRNA-1:exon:7784;Parent=Msa1184420-mRNA-1 |
| chr8_1 | CDS | 20108590 | 20108595 | 20108590 | ID=Msa1184420-mRNA-1:cds;Parent=Msa1184420-mRNA-1 |
| chr8_1 | CDS | 20109309 | 20109314 | 20109309 | ID=Msa1184420-mRNA-1:cds;Parent=Msa1184420-mRNA-1 |
| chr8_1 | CDS | 20110125 | 20110247 | 20110125 | ID=Msa1184420-mRNA-1:cds;Parent=Msa1184420-mRNA-1 |
| chr8_1 | CDS | 20110495 | 20110572 | 20110495 | ID=Msa1184420-mRNA-1:cds;Parent=Msa1184420-mRNA-1 |
| chr8_1 | CDS | 20110667 | 20110754 | 20110667 | ID=Msa1184420-mRNA-1:cds;Parent=Msa1184420-mRNA-1 |
| chr8_1 | CDS | 20111605 | 20111638 | 20111605 | ID=Msa1184420-mRNA-1:cds;Parent=Msa1184420-mRNA-1 |
| chr8_1 | CDS | 20112167 | 20112227 | 20112167 | ID=Msa1184420-mRNA-1:cds;Parent=Msa1184420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
