AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0203330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203330 MtrunA17_Chr2g0301081 95.506 267 1 2 1 256 1 267 0.0 506
Msa0203330 MtrunA17_Chr8g0345631 63.134 217 70 1 48 254 50 266 4.41e-96 282
Msa0203330 MtrunA17_Chr3g0092091 47.761 201 89 3 64 254 56 250 9.68e-59 187
Msa0203330 MtrunA17_Chr3g0133901 38.376 271 143 6 1 255 2 264 1.21e-46 156
Msa0203330 MtrunA17_Chr5g0448411 36.749 283 128 12 5 253 7 272 2.16e-41 143
Msa0203330 MtrunA17_Chr5g0448421 36.201 279 137 10 5 253 7 274 2.20e-41 143
Msa0203330 MtrunA17_Chr4g0006181 33.077 260 86 8 60 255 111 346 4.30e-30 115
Msa0203330 MtrunA17_Chr2g0279001 40.426 188 69 6 71 226 73 249 1.18e-29 112
Msa0203330 MtrunA17_Chr6g0462031 36.098 205 93 8 64 249 49 234 3.53e-29 110
Msa0203330 MtrunA17_Chr5g0447531 31.852 270 135 11 3 244 1 249 1.65e-27 106
Msa0203330 MtrunA17_Chr6g0453141 34.818 247 113 11 40 255 31 260 1.89e-27 106
Msa0203330 MtrunA17_Chr6g0453151 35.000 240 108 11 40 248 98 320 5.53e-27 106
Msa0203330 MtrunA17_Chr4g0051941 34.274 248 114 12 40 255 31 261 6.04e-27 105
Msa0203330 MtrunA17_Chr1g0157481 34.112 214 103 6 71 255 125 329 1.18e-25 103
Msa0203330 MtrunA17_Chr6g0453161 34.413 247 114 11 40 255 33 262 2.03e-25 104
Msa0203330 MtrunA17_Chr6g0453161 33.198 247 117 11 40 255 298 527 3.69e-24 100
Msa0203330 MtrunA17_Chr6g0453181 34.071 226 103 10 59 255 52 260 2.20e-25 100
Msa0203330 MtrunA17_Chr6g0476641 32.432 222 109 8 59 254 74 280 1.15e-24 99.4
Msa0203330 MtrunA17_Chr2g0318521 33.636 220 92 8 59 244 49 248 5.45e-24 97.1
Msa0203330 MtrunA17_Chr3g0113311 29.289 239 81 8 60 234 56 270 3.48e-17 79.0
Msa0203330 MtrunA17_Chr2g0296081 45.679 81 38 2 176 256 30 104 3.37e-15 69.7
Msa0203330 MtrunA17_Chr6g0464511 33.498 203 87 10 59 248 33 200 7.65e-15 71.2
Msa0203330 MtrunA17_Chr6g0453171 40.196 102 45 4 147 248 1 86 1.84e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203330 AT1G19150.1 71.255 247 60 2 19 255 24 269 9.16e-130 368
Msa0203330 AT3G61470.1 64.563 206 63 1 59 254 50 255 1.26e-93 276
Msa0203330 AT3G47470.1 46.766 201 91 3 64 254 57 251 3.41e-58 186
Msa0203330 AT1G45474.2 40.343 233 120 6 38 255 26 254 3.21e-44 150
Msa0203330 AT1G45474.1 40.343 233 120 6 38 255 26 254 3.21e-44 150
Msa0203330 AT1G61520.3 40.179 224 99 7 60 253 52 270 1.67e-42 146
Msa0203330 AT1G61520.1 40.179 224 99 7 60 253 52 270 1.67e-42 146
Msa0203330 AT5G28450.1 63.366 101 37 0 154 254 71 171 2.99e-40 137
Msa0203330 AT1G61520.2 38.356 219 109 7 50 253 8 215 9.89e-36 127
Msa0203330 AT3G54890.1 37.561 205 90 8 64 249 48 233 9.55e-31 114
Msa0203330 AT1G15820.1 33.977 259 125 10 1 226 1 246 1.61e-29 112
Msa0203330 AT2G05100.1 31.944 288 133 12 3 255 1 260 5.38e-28 108
Msa0203330 AT2G05070.1 35.111 225 102 9 59 255 52 260 5.98e-28 108
Msa0203330 AT5G01530.1 31.923 260 89 8 60 255 54 289 1.40e-27 107
Msa0203330 AT3G08940.2 29.831 295 116 9 28 255 16 286 1.81e-27 107
Msa0203330 AT2G34430.1 33.740 246 117 10 40 255 32 261 5.00e-27 105
Msa0203330 AT3G27690.2 34.579 214 96 9 59 244 85 282 9.42e-27 105
Msa0203330 AT3G27690.1 34.579 214 96 9 59 244 53 250 9.55e-27 105
Msa0203330 AT2G34420.1 34.434 212 98 7 70 255 64 260 2.80e-26 103
Msa0203330 AT1G29930.1 35.714 210 93 8 65 248 62 255 4.37e-26 103
Msa0203330 AT1G29920.1 35.714 210 93 8 65 248 62 255 4.86e-26 103
Msa0203330 AT1G29910.1 35.714 210 93 8 65 248 62 255 4.86e-26 103
Msa0203330 AT1G76570.1 30.292 274 158 7 4 255 65 327 1.67e-25 102
Msa0203330 AT4G10340.1 35.160 219 101 9 59 251 65 268 7.68e-24 97.4
Msa0203330 AT5G54270.1 34.328 201 90 7 71 244 64 249 1.46e-23 96.3
Msa0203330 AT3G54890.2 34.146 205 63 8 64 249 48 199 2.14e-20 86.7
Msa0203330 AT2G05100.2 33.503 197 87 9 59 227 52 232 8.63e-20 87.0
Msa0203330 AT2G40100.1 30.165 242 80 9 60 237 55 271 1.17e-19 86.3
Msa0203330 AT3G54890.4 31.351 185 89 8 64 229 48 213 4.09e-16 75.1

Find 88 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTCAACTAGCCTTAA+TGG 0.165083 2_1:-27086851 Msa0203330:CDS
TTTCCCTGTAATTTGTAATT+AGG 0.195230 2_1:-27085779 Msa0203330:three_prime_UTR
CTTCCCAATTGCAGCCTTCC+TGG 0.199772 2_1:-27087321 Msa0203330:intron
CTTGTGCAGGCTTTCACTTC+AGG 0.220137 2_1:-27085959 Msa0203330:intron
ATCACTTTATCTGTTATATA+TGG 0.237860 2_1:+27088028 None:intergenic
CTTTCCTAATTACAAATTAC+AGG 0.255241 2_1:+27085775 None:intergenic
CAGATCCAGAGTTGCTAAAA+TGG 0.292408 2_1:-27087029 Msa0203330:CDS
TACCTGCCATCAAGCCATTC+AGG 0.297044 2_1:+27087671 None:intergenic
ACCTTCAACCCAACCCATTA+AGG 0.308036 2_1:+27086837 None:intergenic
GGGAACCACAATGGCCTATC+TGG 0.315426 2_1:+27087707 None:intergenic
TTAGTCCTCAAAACCATTAC+AGG 0.332116 2_1:+27086673 None:intergenic
GGGTAACCAACATCTGGTTT+TGG 0.345083 2_1:+27086745 None:intergenic
GCCTTAATGGGTTGGGTTGA+AGG 0.347691 2_1:-27086838 Msa0203330:CDS
ATTGTTCAACTAGCCTTAAT+GGG 0.360647 2_1:-27086850 Msa0203330:CDS
CTTGTGTCAATTGTAAAATT+CGG 0.369852 2_1:+27085845 None:intergenic
AAGCGCATTACATGTAATAA+TGG 0.376771 2_1:+27085874 None:intergenic
GATGGCTCATCTTGCTGATC+CGG 0.383167 2_1:-27086560 Msa0203330:CDS
TTGAGCCTAAGTTACCAAAT+AGG 0.386800 2_1:-27086774 Msa0203330:CDS
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2_1:-27086976 Msa0203330:CDS
TCAACTAGCCTTAATGGGTT+GGG 0.388339 2_1:-27086845 Msa0203330:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2_1:-27086658 Msa0203330:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2_1:-27086985 Msa0203330:CDS
CAGTGGCTGAATTTCTTAGT+TGG 0.409181 2_1:+27087988 None:intergenic
TTGTGCAGGCTTTCACTTCA+GGG 0.409776 2_1:-27085958 Msa0203330:intron
TTTGGCCTATTTGGTAACTT+AGG 0.409786 2_1:+27086769 None:intergenic
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2_1:-27087685 Msa0203330:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2_1:-27087677 Msa0203330:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2_1:-27086578 Msa0203330:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2_1:+27087950 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2_1:+27086574 None:intergenic
ATGCAGAGAAATAAGTCAAA+AGG 0.432712 2_1:-27087840 Msa0203330:intron
GAACAACATCAACAACTTCA+TGG 0.441276 2_1:-27087805 Msa0203330:CDS
TTCACTTCAGGGTAGTGCTA+TGG 0.448525 2_1:-27085947 Msa0203330:exon
TTGGTTACCCTGGTGGGCTA+TGG 0.449489 2_1:-27086732 Msa0203330:CDS
CTCAAAACCATTACAGGCTC+AGG 0.461055 2_1:+27086679 None:intergenic
TTCAACTAGCCTTAATGGGT+TGG 0.465567 2_1:-27086846 Msa0203330:CDS
ATGGCTCATCTTGCTGATCC+GGG 0.473722 2_1:-27086559 Msa0203330:CDS
TATCTGTTATATATGGATGA+TGG 0.477805 2_1:+27088035 None:intergenic
ACATGCAGAGTTGCATAAGA+TGG 0.479038 2_1:-27085441 Msa0203330:three_prime_UTR
GTTGGGTTGAAGGTCGAAGA+TGG 0.481490 2_1:-27086828 Msa0203330:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2_1:+27087686 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2_1:-27087673 Msa0203330:intron
TGAACAATGAAAAGTGTTGT+TGG 0.488497 2_1:+27086865 None:intergenic
GGATCAAACCATAGCCCACC+AGG 0.490806 2_1:+27086724 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2_1:-27086706 Msa0203330:CDS
AGGTTCACCTGAGCCTGTAA+TGG 0.492772 2_1:-27086686 Msa0203330:CDS
GATAGGCCATTGTGGTTCCC+TGG 0.495533 2_1:-27087704 Msa0203330:CDS
AAATTCAGCCACTGCAGTAA+TGG 0.498989 2_1:-27087979 Msa0203330:exon
GTGAACCACTTCCTCCAGAT+AGG 0.506478 2_1:-27087721 Msa0203330:CDS
GAACAATGAAAAGTGTTGTT+GGG 0.509421 2_1:+27086866 None:intergenic
CCACCAGGGTAACCAACATC+TGG 0.511783 2_1:+27086739 None:intergenic
GCTGAATTTCTTAGTTGGAG+TGG 0.515419 2_1:+27087993 None:intergenic
ACAATTAGAAATGCAAAGAA+AGG 0.515819 2_1:-27087758 Msa0203330:CDS
AGAACTAATGCATGCAAGAT+GGG 0.516375 2_1:-27086995 Msa0203330:CDS
TTTCTACCACAGCATTATGC+AGG 0.521078 2_1:+27085900 None:intergenic
CAGAACTAATGCATGCAAGA+TGG 0.524297 2_1:-27086996 Msa0203330:CDS
AAGTTGTTGATGTTGTTCCT+TGG 0.527869 2_1:+27087810 None:intergenic
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2_1:-27086657 Msa0203330:CDS
AATGGCCTATCTGGAGGAAG+TGG 0.535116 2_1:+27087716 None:intergenic
TTGGGTTGAAGGTCGAAGAT+GGG 0.540851 2_1:-27086827 Msa0203330:CDS
GGCTCAATATCAACACTACC+CGG 0.541273 2_1:+27086790 None:intergenic
AACTTCTCATGGTACAATGC+AGG 0.549392 2_1:-27086910 Msa0203330:CDS
ATGGTTTGATCCTATGCAGT+GGG 0.554668 2_1:-27086713 Msa0203330:CDS
TGTTAAACACAAATAACACT+TGG 0.558210 2_1:+27085461 None:intergenic
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2_1:-27086601 Msa0203330:CDS
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2_1:+27086703 None:intergenic
TTCCTCCAGATAGGCCATTG+TGG 0.574027 2_1:-27087712 Msa0203330:CDS
AAACCAGATGTTGGTTACCC+TGG 0.575868 2_1:-27086742 Msa0203330:CDS
ATGGGCTGATATCGTTAACC+CGG 0.576122 2_1:-27086809 Msa0203330:CDS
TATGGTTTGATCCTATGCAG+TGG 0.581606 2_1:-27086714 Msa0203330:CDS
GAGAAAATGTTGACATGACC+CGG 0.581640 2_1:+27086541 None:intergenic
CAGATGTTGGTTACCCTGGT+GGG 0.584280 2_1:-27086738 Msa0203330:CDS
CCAAACCCAAAACCAGATGT+TGG 0.602151 2_1:-27086751 Msa0203330:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2_1:+27087941 None:intergenic
GGCTAAAGCCATTACTGCAG+TGG 0.605524 2_1:+27087971 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2_1:+27087944 None:intergenic
TTTCCTAATTACAAATTACA+GGG 0.608530 2_1:+27085776 None:intergenic
CCAGATGTTGGTTACCCTGG+TGG 0.630637 2_1:-27086739 Msa0203330:CDS
AACCACAATGGCCTATCTGG+AGG 0.659675 2_1:+27087710 None:intergenic
CAAAACCAAAATCACCAGGA+AGG 0.665067 2_1:+27087307 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2_1:+27087687 None:intergenic
TGGGCTGATATCGTTAACCC+GGG 0.675104 2_1:-27086808 Msa0203330:CDS
GAACTACCAGGGAACCACAA+TGG 0.679112 2_1:+27087698 None:intergenic
GCTCAATATCAACACTACCC+GGG 0.692368 2_1:+27086791 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2_1:+27087674 None:intergenic
GATCAAACCATAGCCCACCA+GGG 0.714446 2_1:+27086725 None:intergenic
AATGATCCTGCATAATGCTG+TGG 0.727298 2_1:-27085906 Msa0203330:three_prime_UTR
TGGTTTGATCCTATGCAGTG+GGG 0.749765 2_1:-27086712 Msa0203330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCCATTTTATTTTATATTT+TGG - chr2_1:27086070-27086089 Msa0203330:intron 10.0%
!! TTCCAAAATATAAAATAAAA+TGG + chr2_1:27086075-27086094 None:intergenic 10.0%
!! AATAATAAGTTAAAAAGAGT+TGG + chr2_1:27085572-27085591 None:intergenic 15.0%
!!! ATTTTTGTTAGTTTTCTTAA+TGG - chr2_1:27085833-27085852 Msa0203330:three_prime_UTR 15.0%
!!! ATTTTTACTTTCGTTTTATT+TGG - chr2_1:27085908-27085927 Msa0203330:three_prime_UTR 15.0%
!!! TGATTTTTTCAAATTATTAG+AGG + chr2_1:27087845-27087864 None:intergenic 15.0%
!! ATCACTTTATCTGTTATATA+TGG + chr2_1:27085455-27085474 None:intergenic 20.0%
!!! AGTTTTCTTAATGGAAAATT+TGG - chr2_1:27085842-27085861 Msa0203330:three_prime_UTR 20.0%
!! AAAAAAAAGAACATCATAGT+GGG + chr2_1:27086018-27086037 None:intergenic 20.0%
!! TAAAAAAAAGAACATCATAG+TGG + chr2_1:27086019-27086038 None:intergenic 20.0%
!! TTATAGGTTAATTAGTTACT+TGG + chr2_1:27086414-27086433 None:intergenic 20.0%
!!! TTTTTTGAGCAAAATAATCT+AGG - chr2_1:27087229-27087248 Msa0203330:intron 20.0%
!! TTTCCTAATTACAAATTACA+GGG + chr2_1:27087707-27087726 None:intergenic 20.0%
! TATCTGTTATATATGGATGA+TGG + chr2_1:27085448-27085467 None:intergenic 25.0%
! ACAATTAGAAATGCAAAGAA+AGG - chr2_1:27085722-27085741 Msa0203330:intron 25.0%
! CATATTTACTCTTTACCATT+TGG + chr2_1:27085983-27086002 None:intergenic 25.0%
! CAAATGGTAAAGAGTAAATA+TGG - chr2_1:27085981-27086000 Msa0203330:intron 25.0%
! GTTTAATGATGATAAGGATT+TGG + chr2_1:27086111-27086130 None:intergenic 25.0%
! GAAGTTGTTTAATGATGATA+AGG + chr2_1:27086117-27086136 None:intergenic 25.0%
! ATTTGATCACATCTAATTAC+TGG - chr2_1:27086341-27086360 Msa0203330:intron 25.0%
! ACCTATAAATTAATCCTTTC+AGG - chr2_1:27086426-27086445 Msa0203330:intron 25.0%
! CCTATAAATTAATCCTTTCA+GGG - chr2_1:27086427-27086446 Msa0203330:intron 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG + chr2_1:27086540-27086559 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG - chr2_1:27086537-27086556 Msa0203330:intron 25.0%
!! TAGTCCTATTGATAATTTGA+TGG - chr2_1:27086902-27086921 Msa0203330:CDS 25.0%
!!! TTTTAACTCATTATATGACG+TGG - chr2_1:27087049-27087068 Msa0203330:intron 25.0%
! GTTATATATTGGAGTTTAGT+TGG + chr2_1:27087110-27087129 None:intergenic 25.0%
! TAAACTCCAATATATAACAG+AGG - chr2_1:27087112-27087131 Msa0203330:intron 25.0%
! AAAATTCATGTAGCTTCTAT+TGG + chr2_1:27087320-27087339 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG - chr2_1:27087328-27087347 Msa0203330:intron 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG - chr2_1:27087334-27087353 Msa0203330:intron 25.0%
!!! ATAAATCAATGTTTTGATCC+CGG - chr2_1:27087451-27087470 Msa0203330:intron 25.0%
! CTTGTGTCAATTGTAAAATT+CGG + chr2_1:27087638-27087657 None:intergenic 25.0%
!! TTTCCCTGTAATTTGTAATT+AGG - chr2_1:27087701-27087720 Msa0203330:CDS 25.0%
! CTTTCCTAATTACAAATTAC+AGG + chr2_1:27087708-27087727 None:intergenic 25.0%
!! TTTCAAATTATTAGAGGTGT+CGG + chr2_1:27087839-27087858 None:intergenic 25.0%
! TGTTAAACACAAATAACACT+TGG + chr2_1:27088022-27088041 None:intergenic 25.0%
!! AAAACTTGATAATGAAGTGG+AGG + chr2_1:27085539-27085558 None:intergenic 30.0%
!! TGGAAAACTTGATAATGAAG+TGG + chr2_1:27085542-27085561 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG - chr2_1:27085545-27085564 Msa0203330:intron 30.0%
ATGCAGAGAAATAAGTCAAA+AGG - chr2_1:27085640-27085659 Msa0203330:intron 30.0%
ATGTTCACTTTATGATGTGT+TGG - chr2_1:27086241-27086260 Msa0203330:intron 30.0%
TAGGTTAATTAGTTACTTGG+TGG + chr2_1:27086411-27086430 None:intergenic 30.0%
CCCTGAAAGGATTAATTTAT+AGG + chr2_1:27086430-27086449 None:intergenic 30.0%
GTTATGTCAAAAACTTCTCA+TGG - chr2_1:27086559-27086578 Msa0203330:CDS 30.0%
!! GAACAATGAAAAGTGTTGTT+GGG + chr2_1:27086617-27086636 None:intergenic 30.0%
!! TGAACAATGAAAAGTGTTGT+TGG + chr2_1:27086618-27086637 None:intergenic 30.0%
!! ATTGTTCAACTAGCCTTAAT+GGG - chr2_1:27086630-27086649 Msa0203330:CDS 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG - chr2_1:27086876-27086895 Msa0203330:CDS 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG - chr2_1:27086877-27086896 Msa0203330:CDS 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG - chr2_1:27086878-27086897 Msa0203330:CDS 30.0%
TGAGCCATCAAATTATCAAT+AGG + chr2_1:27086909-27086928 None:intergenic 30.0%
CATCATTAAATGCATGTGTA+AGG + chr2_1:27087028-27087047 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG - chr2_1:27087333-27087352 Msa0203330:intron 30.0%
AAACAATATGCACACTACAT+AGG - chr2_1:27087408-27087427 Msa0203330:intron 30.0%
AAGCGCATTACATGTAATAA+TGG + chr2_1:27087609-27087628 None:intergenic 30.0%
AGTTGTGGTTTATTGAAGTT+CGG + chr2_1:27087959-27087978 None:intergenic 30.0%
! TGATAATGAAGTGGAGGAAA+TGG + chr2_1:27085533-27085552 None:intergenic 35.0%
TAAAAAGAGTTGGACCTGTT+TGG + chr2_1:27085562-27085581 None:intergenic 35.0%
! AGTCAAAAGGTTTTACACCA+AGG - chr2_1:27085653-27085672 Msa0203330:intron 35.0%
AAGTTGTTGATGTTGTTCCT+TGG + chr2_1:27085673-27085692 None:intergenic 35.0%
GAACAACATCAACAACTTCA+TGG - chr2_1:27085675-27085694 Msa0203330:intron 35.0%
!! TGGTAAACCAAAAGTATCCT+CGG - chr2_1:27085928-27085947 Msa0203330:three_prime_UTR 35.0%
AAATCAAACCCTGAACCAAA+TGG - chr2_1:27085965-27085984 Msa0203330:intron 35.0%
! ACTCTTTACCATTTGGTTCA+GGG + chr2_1:27085976-27085995 None:intergenic 35.0%
! TACTCTTTACCATTTGGTTC+AGG + chr2_1:27085977-27085996 None:intergenic 35.0%
AAGACATACCTAATCCAAGA+GGG + chr2_1:27086200-27086219 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG + chr2_1:27086201-27086220 None:intergenic 35.0%
AATTACTGGTGACTACTTGT+CGG - chr2_1:27086355-27086374 Msa0203330:intron 35.0%
AGAACTAATGCATGCAAGAT+GGG - chr2_1:27086485-27086504 Msa0203330:intron 35.0%
!! CATTGTTCAACTAGCCTTAA+TGG - chr2_1:27086629-27086648 Msa0203330:CDS 35.0%
TTGAGCCTAAGTTACCAAAT+AGG - chr2_1:27086706-27086725 Msa0203330:CDS 35.0%
! TTTGGCCTATTTGGTAACTT+AGG + chr2_1:27086714-27086733 None:intergenic 35.0%
TTAGTCCTCAAAACCATTAC+AGG + chr2_1:27086810-27086829 None:intergenic 35.0%
!!! TGTAATGGTTTTGAGGACTA+AGG - chr2_1:27086809-27086828 Msa0203330:CDS 35.0%
AGGACTAAGGAGATTAAGAA+TGG - chr2_1:27086822-27086841 Msa0203330:CDS 35.0%
GGACTAAGGAGATTAAGAAT+GGG - chr2_1:27086823-27086842 Msa0203330:CDS 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG - chr2_1:27086850-27086869 Msa0203330:CDS 35.0%
TTTCAAGCTGTTTATGTTGG+GGG - chr2_1:27086879-27086898 Msa0203330:CDS 35.0%
GGATCACCTCTGTTATATAT+TGG + chr2_1:27087121-27087140 None:intergenic 35.0%
CATGTAGCTTCTATTGGAAA+TGG + chr2_1:27087314-27087333 None:intergenic 35.0%
TCATAGTTTAACCGATGGAA+AGG + chr2_1:27087768-27087787 None:intergenic 35.0%
ATCGGTTAAACTATGAAGCA+CGG - chr2_1:27087772-27087791 Msa0203330:CDS 35.0%
GAACTTCAATAAACCACAAC+TGG - chr2_1:27087958-27087977 Msa0203330:CDS 35.0%
AGAAAAACAAAAGCCAGTTG+TGG + chr2_1:27087974-27087993 None:intergenic 35.0%
GCTGAATTTCTTAGTTGGAG+TGG + chr2_1:27085490-27085509 None:intergenic 40.0%
CAGTGGCTGAATTTCTTAGT+TGG + chr2_1:27085495-27085514 None:intergenic 40.0%
AAATTCAGCCACTGCAGTAA+TGG - chr2_1:27085501-27085520 Msa0203330:three_prime_UTR 40.0%
CAAAACCAAAATCACCAGGA+AGG + chr2_1:27086176-27086195 None:intergenic 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG - chr2_1:27086183-27086202 Msa0203330:intron 40.0%
CTTCATATTGAAGACGTGTC+TGG - chr2_1:27086280-27086299 Msa0203330:intron 40.0%
! TGGTGGTGAATCAATAGACA+CGG + chr2_1:27086394-27086413 None:intergenic 40.0%
CAGATCCAGAGTTGCTAAAA+TGG - chr2_1:27086451-27086470 Msa0203330:intron 40.0%
!! GCTAACCATTTTAGCAACTC+TGG + chr2_1:27086459-27086478 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG - chr2_1:27086484-27086503 Msa0203330:intron 40.0%
AACTTCTCATGGTACAATGC+AGG - chr2_1:27086570-27086589 Msa0203330:CDS 40.0%
!! TTCAACTAGCCTTAATGGGT+TGG - chr2_1:27086634-27086653 Msa0203330:CDS 40.0%
!! TCAACTAGCCTTAATGGGTT+GGG - chr2_1:27086635-27086654 Msa0203330:CDS 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG + chr2_1:27086737-27086756 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG - chr2_1:27086766-27086785 Msa0203330:CDS 40.0%
ATGGTTTGATCCTATGCAGT+GGG - chr2_1:27086767-27086786 Msa0203330:CDS 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG - chr2_1:27086849-27086868 Msa0203330:CDS 40.0%
GAGAAAATGTTGACATGACC+CGG + chr2_1:27086942-27086961 None:intergenic 40.0%
! GGGTCATGTCAACATTTTCT+CGG - chr2_1:27086941-27086960 Msa0203330:CDS 40.0%
ATGACGTGGTAACACATCAT+TGG - chr2_1:27087063-27087082 Msa0203330:intron 40.0%
!! TCATGCCTTACTGTTTTGAG+CGG - chr2_1:27087154-27087173 Msa0203330:intron 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG - chr2_1:27087508-27087527 Msa0203330:intron 40.0%
AATGATCCTGCATAATGCTG+TGG - chr2_1:27087574-27087593 Msa0203330:intron 40.0%
TTTCTACCACAGCATTATGC+AGG + chr2_1:27087583-27087602 None:intergenic 40.0%
CTCGATCATTTCCTTTCCAT+CGG - chr2_1:27087754-27087773 Msa0203330:CDS 40.0%
GTGCTTCATAGTTTAACCGA+TGG + chr2_1:27087773-27087792 None:intergenic 40.0%
TATATGTGTCAGTGTCGTGT+TGG - chr2_1:27087881-27087900 Msa0203330:intron 40.0%
ACATGCAGAGTTGCATAAGA+TGG - chr2_1:27088039-27088058 Msa0203330:five_prime_UTR 40.0%
ATTCAGGAGGTGAACTACCA+GGG + chr2_1:27085796-27085815 None:intergenic 45.0%
! ACATCATAGTGGGACACAAG+TGG + chr2_1:27086008-27086027 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG + chr2_1:27086180-27086199 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG - chr2_1:27086189-27086208 Msa0203330:intron 45.0%
CATGCAAGATGGGCAATGTT+AGG - chr2_1:27086495-27086514 Msa0203330:intron 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG - chr2_1:27086504-27086523 Msa0203330:intron 45.0%
ACCTTCAACCCAACCCATTA+AGG + chr2_1:27086646-27086665 None:intergenic 45.0%
!! TTGGGTTGAAGGTCGAAGAT+GGG - chr2_1:27086653-27086672 Msa0203330:CDS 45.0%
! ATGGGCTGATATCGTTAACC+CGG - chr2_1:27086671-27086690 Msa0203330:CDS 45.0%
GCTCAATATCAACACTACCC+GGG + chr2_1:27086692-27086711 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG + chr2_1:27086693-27086712 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG + chr2_1:27086723-27086742 None:intergenic 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG + chr2_1:27086732-27086751 None:intergenic 45.0%
CCAAACCCAAAACCAGATGT+TGG - chr2_1:27086729-27086748 Msa0203330:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG + chr2_1:27086738-27086757 None:intergenic 45.0%
! AAACCAGATGTTGGTTACCC+TGG - chr2_1:27086738-27086757 Msa0203330:CDS 45.0%
TGGTTTGATCCTATGCAGTG+GGG - chr2_1:27086768-27086787 Msa0203330:CDS 45.0%
CTCAAAACCATTACAGGCTC+AGG + chr2_1:27086804-27086823 None:intergenic 45.0%
!! CTGAGCCTGTAATGGTTTTG+AGG - chr2_1:27086802-27086821 Msa0203330:CDS 45.0%
TCTCTCCGCTCAAAACAGTA+AGG + chr2_1:27087162-27087181 None:intergenic 45.0%
TACTTCTAACACCTCTCAGC+CGG + chr2_1:27087473-27087492 None:intergenic 45.0%
TTGTGCAGGCTTTCACTTCA+GGG - chr2_1:27087522-27087541 Msa0203330:intron 45.0%
TTCACTTCAGGGTAGTGCTA+TGG - chr2_1:27087533-27087552 Msa0203330:intron 45.0%
ATGAAGCACGGATACGAACA+CGG - chr2_1:27087784-27087803 Msa0203330:CDS 45.0%
! TGTCAGTGTCGTGTTGGTAT+CGG - chr2_1:27087887-27087906 Msa0203330:intron 45.0%
GGCTAAAGCCATTACTGCAG+TGG + chr2_1:27085512-27085531 None:intergenic 50.0%
GTGAACCACTTCCTCCAGAT+AGG - chr2_1:27085759-27085778 Msa0203330:three_prime_UTR 50.0%
AATGGCCTATCTGGAGGAAG+TGG + chr2_1:27085767-27085786 None:intergenic 50.0%
TTCCTCCAGATAGGCCATTG+TGG - chr2_1:27085768-27085787 Msa0203330:three_prime_UTR 50.0%
AACCACAATGGCCTATCTGG+AGG + chr2_1:27085773-27085792 None:intergenic 50.0%
GAACTACCAGGGAACCACAA+TGG + chr2_1:27085785-27085804 None:intergenic 50.0%
CATTCAGGAGGTGAACTACC+AGG + chr2_1:27085797-27085816 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG - chr2_1:27085795-27085814 Msa0203330:three_prime_UTR 50.0%
TCACCTCCTGAATGGCTTGA+TGG - chr2_1:27085803-27085822 Msa0203330:three_prime_UTR 50.0%
TACCTGCCATCAAGCCATTC+AGG + chr2_1:27085812-27085831 None:intergenic 50.0%
!! TTTCTAGTTAGTGCGTGCCG+AGG + chr2_1:27085948-27085967 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+GGG + chr2_1:27086165-27086184 None:intergenic 50.0%
ATCACCAGGAAGGCTGCAAT+TGG + chr2_1:27086166-27086185 None:intergenic 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG - chr2_1:27086168-27086187 Msa0203330:intron 50.0%
GTGACTACTTGTCGGTACCA+CGG - chr2_1:27086363-27086382 Msa0203330:intron 50.0%
ACTCTGGATCTGACCCTGAA+AGG + chr2_1:27086443-27086462 None:intergenic 50.0%
!! GCCTTAATGGGTTGGGTTGA+AGG - chr2_1:27086642-27086661 Msa0203330:CDS 50.0%
!! GTTGGGTTGAAGGTCGAAGA+TGG - chr2_1:27086652-27086671 Msa0203330:CDS 50.0%
TGGGCTGATATCGTTAACCC+GGG - chr2_1:27086672-27086691 Msa0203330:CDS 50.0%
! CAGATGTTGGTTACCCTGGT+GGG - chr2_1:27086742-27086761 Msa0203330:CDS 50.0%
GATCAAACCATAGCCCACCA+GGG + chr2_1:27086758-27086777 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTAA+TGG - chr2_1:27086794-27086813 Msa0203330:CDS 50.0%
GATGGCTCATCTTGCTGATC+CGG - chr2_1:27086920-27086939 Msa0203330:CDS 50.0%
ATGGCTCATCTTGCTGATCC+GGG - chr2_1:27086921-27086940 Msa0203330:CDS 50.0%
AGGCATGACGCATGAGTACA+TGG + chr2_1:27087142-27087161 None:intergenic 50.0%
!!! ATGTTTTGATCCCGGCTGAG+AGG - chr2_1:27087459-27087478 Msa0203330:intron 50.0%
ACTTCTAACACCTCTCAGCC+GGG + chr2_1:27087472-27087491 None:intergenic 50.0%
CTTGTGCAGGCTTTCACTTC+AGG - chr2_1:27087521-27087540 Msa0203330:intron 50.0%
CATTAGACGTGTCCCAGTGT+CGG + chr2_1:27087926-27087945 None:intergenic 50.0%
GGGAACCACAATGGCCTATC+TGG + chr2_1:27085776-27085795 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG - chr2_1:27085776-27085795 Msa0203330:three_prime_UTR 55.0%
CTGCCATCAAGCCATTCAGG+AGG + chr2_1:27085809-27085828 None:intergenic 55.0%
! CTCCTGAATGGCTTGATGGC+AGG - chr2_1:27085807-27085826 Msa0203330:three_prime_UTR 55.0%
! GTGCGTGCCGAGGATACTTT+TGG + chr2_1:27085938-27085957 None:intergenic 55.0%
CTTCCCAATTGCAGCCTTCC+TGG - chr2_1:27086159-27086178 Msa0203330:intron 55.0%
CCACCAGGGTAACCAACATC+TGG + chr2_1:27086744-27086763 None:intergenic 55.0%
! CCAGATGTTGGTTACCCTGG+TGG - chr2_1:27086741-27086760 Msa0203330:CDS 55.0%
!! TTGGTTACCCTGGTGGGCTA+TGG - chr2_1:27086748-27086767 Msa0203330:CDS 55.0%
GGATCAAACCATAGCCCACC+AGG + chr2_1:27086759-27086778 None:intergenic 55.0%
GATCCTATGCAGTGGGGAAG+AGG - chr2_1:27086774-27086793 Msa0203330:CDS 55.0%
GAACCTCTTCCCCACTGCAT+AGG + chr2_1:27086780-27086799 None:intergenic 55.0%
ACGGATACGAACACGGACAC+CGG - chr2_1:27087791-27087810 Msa0203330:CDS 55.0%
GTCAGTGTCCGTGTTGTGTC+CGG + chr2_1:27087813-27087832 None:intergenic 55.0%
AGACGACACATGTCCGACAC+TGG - chr2_1:27087910-27087929 Msa0203330:intron 55.0%
GACGACACATGTCCGACACT+GGG - chr2_1:27087911-27087930 Msa0203330:intron 55.0%
ACTGGGACACGTCTAATGCG+AGG - chr2_1:27087928-27087947 Msa0203330:intron 55.0%
CAATAGACACGGCACGACCG+TGG + chr2_1:27086383-27086402 None:intergenic 60.0%
CACGGACACCGGACACAACA+CGG - chr2_1:27087802-27087821 Msa0203330:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 27085437 27088065 27085437 ID=Msa0203330;Name=Msa0203330
chr2_1 mRNA 27085437 27088065 27085437 ID=Msa0203330-mRNA-1;Parent=Msa0203330;Name=Msa0203330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=83|0.8|0.83|1|0.6|0.66|6|295|256
chr2_1 exon 27085437 27085525 27085437 ID=Msa0203330-mRNA-1:exon:10080;Parent=Msa0203330-mRNA-1
chr2_1 exon 27085749 27085972 27085749 ID=Msa0203330-mRNA-1:exon:10079;Parent=Msa0203330-mRNA-1
chr2_1 exon 27086540 27087054 27086540 ID=Msa0203330-mRNA-1:exon:10078;Parent=Msa0203330-mRNA-1
chr2_1 exon 27087322 27087329 27087322 ID=Msa0203330-mRNA-1:exon:10077;Parent=Msa0203330-mRNA-1
chr2_1 exon 27087674 27087856 27087674 ID=Msa0203330-mRNA-1:exon:10076;Parent=Msa0203330-mRNA-1
chr2_1 exon 27087936 27088065 27087936 ID=Msa0203330-mRNA-1:exon:10075;Parent=Msa0203330-mRNA-1
chr2_1 five_prime_UTR 27087983 27088065 27087983 ID=Msa0203330-mRNA-1:five_prime_utr;Parent=Msa0203330-mRNA-1
chr2_1 CDS 27087936 27087982 27087936 ID=Msa0203330-mRNA-1:cds;Parent=Msa0203330-mRNA-1
chr2_1 CDS 27087674 27087856 27087674 ID=Msa0203330-mRNA-1:cds;Parent=Msa0203330-mRNA-1
chr2_1 CDS 27087322 27087329 27087322 ID=Msa0203330-mRNA-1:cds;Parent=Msa0203330-mRNA-1
chr2_1 CDS 27086540 27087054 27086540 ID=Msa0203330-mRNA-1:cds;Parent=Msa0203330-mRNA-1
chr2_1 CDS 27085955 27085972 27085955 ID=Msa0203330-mRNA-1:cds;Parent=Msa0203330-mRNA-1
chr2_1 three_prime_UTR 27085749 27085954 27085749 ID=Msa0203330-mRNA-1:three_prime_utr;Parent=Msa0203330-mRNA-1
chr2_1 three_prime_UTR 27085437 27085525 27085437 ID=Msa0203330-mRNA-1:three_prime_utr;Parent=Msa0203330-mRNA-1
Gene Sequence

>Msa0203330

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGAGAAATAAGTCAAAAGGTTTTACACCAAGGAACAACATCAACAACTTCATGGTCAAGCAGCAGAAGAAGAAGACTTACAATTAGAAATGCAAAGAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGCCTTCCTGGGTCAGATCCAGAGTTGCTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGTTCAGTAGAATATTTTGCAGACCCAACAACACTTTTCATTGTTCAACTAGCCTTAATGGGTTGGGTTGAAGGTCGAAGATGGGCTGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCTAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTAATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCGGGTCATGTCAACATTTTCTCGGCTTTCACTTCAGGGTAG

Protein sequence

>Msa0203330

MALAISSTSLSSFPNREISQKVLHQGTTSTTSWSSSRRRRLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG*