AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626900 MtrunA17_Chr4g0003121 94.256 383 22 0 1 383 1 383 0.0 727
Msa0626900 MtrunA17_Chr8g0337611 34.831 267 163 8 113 375 161 420 3.64e-39 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626900 AT1G52510.1 74.324 370 94 1 14 383 12 380 0.0 580
Msa0626900 AT1G52510.2 80.932 236 45 0 148 383 1 236 6.93e-147 416
Msa0626900 AT4G12830.1 32.533 375 225 12 22 375 12 379 2.03e-40 147

Find 106 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACTAAATTTACAATTTA+AGG 0.020274 4_3:+6956047 None:intergenic
TGTTTATCGGTTACCTTATT+TGG 0.104844 4_3:-6958318 Msa0626900:CDS
AGAAACCTTTATGCTAATTA+AGG 0.223836 4_3:-6955873 Msa0626900:three_prime_UTR
AAATCATCATTCAACCCTTT+TGG 0.239268 4_3:-6962029 Msa0626900:CDS
ATCATCTTGATCATTGCTTT+TGG 0.295202 4_3:+6962052 None:intergenic
CTTTCTAGGTTCCCTCTATA+TGG 0.296099 4_3:-6958666 Msa0626900:intron
GATTCCTTCAAGGTCAGTTT+TGG 0.301670 4_3:+6956110 None:intergenic
GGTCCACTGCTTGCCAAATA+AGG 0.311829 4_3:+6958305 None:intergenic
GAAATAGATAATGGAATGTT+TGG 0.321859 4_3:+6955914 None:intergenic
GCAAGCAGTGGACCTGGATT+TGG 0.327621 4_3:-6958296 Msa0626900:intron
GGATTTCTTGTAGGTTCATA+TGG 0.332214 4_3:-6959597 Msa0626900:CDS
ATGGGAGATGAGCTTGTTAA+TGG 0.335320 4_3:+6959516 None:intergenic
AGATGGTTTGTGAGGGAAAC+TGG 0.336712 4_3:-6960478 Msa0626900:intron
CTCCTTAAGGGATTTCTTGT+AGG 0.338401 4_3:-6959606 Msa0626900:intron
GGATGTTTGGAAATAGATAA+TGG 0.339474 4_3:+6955905 None:intergenic
GCGCCTGACTGGATAGGATT+TGG 0.341818 4_3:-6960123 Msa0626900:CDS
TTCTAATAGACTTGGATGTT+TGG 0.343620 4_3:+6955892 None:intergenic
CTCAACCTTAATTAGCATAA+AGG 0.348365 4_3:+6955868 None:intergenic
ATGAAAAGGCTGATGTTTAT+CGG 0.353384 4_3:-6958331 Msa0626900:CDS
TGCATTGGATAAACTGCTTC+AGG 0.359279 4_3:-6959957 Msa0626900:CDS
TTAAAACAGTTGGCAGATAC+AGG 0.369596 4_3:-6960159 Msa0626900:intron
GATAAACTGCTTCAGGTGTT+GGG 0.375461 4_3:-6959950 Msa0626900:CDS
CAGAAGGATTTGCATCTAAC+AGG 0.381574 4_3:-6957299 Msa0626900:intron
TATCTTGCTTGAATTCTTCA+AGG 0.386504 4_3:+6959563 None:intergenic
CACAAACCATCTCAACTTCC+CGG 0.388212 4_3:+6960489 None:intergenic
ACAAGCTCATCTCCCATTCC+TGG 0.390715 4_3:-6959510 Msa0626900:CDS
AAGGAACAAACAACATATAT+AGG 0.393878 4_3:+6956013 None:intergenic
TGAATGGCACTACGGCTTGA+TGG 0.396499 4_3:+6961990 None:intergenic
TGCAAAACAAAGAGCTTCAA+TGG 0.399245 4_3:+6962232 None:intergenic
TACGGATCATATGTAAAATC+CGG 0.408411 4_3:-6960508 Msa0626900:CDS
ATCAAGCTTAAATTGATAGA+AGG 0.411333 4_3:-6956310 Msa0626900:CDS
GCTCAGCAATAATAGCATTC+TGG 0.422752 4_3:+6958631 None:intergenic
TAAGCCGATAATGCTTGCTT+GGG 0.422862 4_3:-6956398 Msa0626900:CDS
GGATAAACTGCTTCAGGTGT+TGG 0.424987 4_3:-6959951 Msa0626900:CDS
TCCACTGCTTTGCGCCTGAC+TGG 0.428982 4_3:-6960134 Msa0626900:CDS
CCTGCTGAAGCTGGCAATGT+TGG 0.436380 4_3:-6961954 Msa0626900:CDS
AAAGCATCAATAACTTTCTC+AGG 0.439089 4_3:+6956158 None:intergenic
GAAATAGCAAGGTTTAGTGT+TGG 0.443464 4_3:+6962182 None:intergenic
ACAACCAAAACTGACCTTGA+AGG 0.451699 4_3:-6956114 Msa0626900:three_prime_UTR
CAAGACAAGGGCAAGGAATA+CGG 0.457995 4_3:-6960526 Msa0626900:CDS
CTGGACTATTTCAGCAGCTA+AGG 0.459053 4_3:-6959491 Msa0626900:intron
ACCTGAACAACTAGGTAAAA+CGG 0.462960 4_3:+6959917 None:intergenic
GTCATATGCCACAAGAAGAT+TGG 0.472192 4_3:-6956282 Msa0626900:intron
ATAAGCCGATAATGCTTGCT+TGG 0.478575 4_3:-6956399 Msa0626900:CDS
TTATCAGTAACAAATCCAAA+AGG 0.481278 4_3:+6962014 None:intergenic
CCAACATTGCCAGCTTCAGC+AGG 0.482936 4_3:+6961954 None:intergenic
CATTGAAATTCACCATATAG+AGG 0.484860 4_3:+6958654 None:intergenic
ATAAACTGCTTCAGGTGTTG+GGG 0.485560 4_3:-6959949 Msa0626900:CDS
TCTGAAAATCCTGCTGAAGC+TGG 0.491648 4_3:-6961963 Msa0626900:CDS
TGCTGAAATAGTCCAGGAAT+GGG 0.492694 4_3:+6959498 None:intergenic
TATTTGGCAAGCAGTGGACC+TGG 0.494712 4_3:-6958302 Msa0626900:CDS
ATGTCCTTACTCAAATCAAA+AGG 0.497107 4_3:-6956086 Msa0626900:three_prime_UTR
GCTTGAATTCTTCAAGGCCC+AGG 0.497952 4_3:+6959569 None:intergenic
GTGTAATTAAAACCGTATCC+TGG 0.502859 4_3:+6960081 None:intergenic
CTGCTGAAATAGTCCAGGAA+TGG 0.505004 4_3:+6959497 None:intergenic
TGCTTTGCGCCTGACTGGAT+AGG 0.508011 4_3:-6960129 Msa0626900:CDS
GGAACAATTGTATTCCTTCA+CGG 0.510150 4_3:-6960340 Msa0626900:CDS
TTCAGTGACAAGCCACAGCC+AGG 0.513906 4_3:-6960099 Msa0626900:CDS
CATCAACCGCTAGTTATGTT+CGG 0.514713 4_3:-6962282 Msa0626900:five_prime_UTR
TAGGTTCATATGGACTGACC+TGG 0.515329 4_3:-6959587 Msa0626900:CDS
TAAGGACATGGATTCCTTCA+AGG 0.516983 4_3:+6956100 None:intergenic
ACTGAAAGTACCGTTGAAGT+TGG 0.517505 4_3:+6957329 None:intergenic
AAAGGAGTTCCACGATGCAT+TGG 0.518692 4_3:-6959972 Msa0626900:CDS
GCTGAGCGGTTTATTGAAAG+AGG 0.524103 4_3:-6958615 Msa0626900:CDS
CTTTAGATACCTGAACAACT+AGG 0.528906 4_3:+6959909 None:intergenic
AAACCAAATCCTATCCAGTC+AGG 0.531111 4_3:+6960120 None:intergenic
TAGTAGTTGAAGAAATAGCA+AGG 0.535867 4_3:+6962171 None:intergenic
TCCAGTCAGGCGCAAAGCAG+TGG 0.540824 4_3:+6960133 None:intergenic
CTTAGCTGCTGAAATAGTCC+AGG 0.545953 4_3:+6959492 None:intergenic
TTACCTTATTTGGCAAGCAG+TGG 0.551775 4_3:-6958308 Msa0626900:CDS
TATCAGTAACAAATCCAAAA+GGG 0.554155 4_3:+6962015 None:intergenic
CAGACAATTGAATGGCACTA+CGG 0.555154 4_3:+6961982 None:intergenic
ACGGATCATATGTAAAATCC+GGG 0.557018 4_3:-6960507 Msa0626900:CDS
TAAAATCCGGGAAGTTGAGA+TGG 0.557129 4_3:-6960495 Msa0626900:CDS
CTTAAATTGATAGAAGGAGC+TGG 0.557191 4_3:-6956304 Msa0626900:CDS
GACAAGCCACAGCCAGGATA+CGG 0.563905 4_3:-6960093 Msa0626900:CDS
ATAAAGGTTTCTAATAGACT+TGG 0.566263 4_3:+6955884 None:intergenic
TTATGCTAATTAAGGTTGAG+AGG 0.568594 4_3:-6955865 Msa0626900:three_prime_UTR
CTACCGAGTTGTTATGTCTG+AGG 0.568732 4_3:-6960296 Msa0626900:intron
ATTGCGTTGGCGCTCCGTGA+AGG 0.569256 4_3:+6960326 None:intergenic
TTATGTCACTAACCAAATCC+AGG 0.573861 4_3:+6958284 None:intergenic
TTAAAACCGTATCCTGGCTG+TGG 0.574929 4_3:+6960087 None:intergenic
GCAAGAAAAGCCAACTTCAA+CGG 0.586187 4_3:-6957339 Msa0626900:CDS
TACTCTCACCAATCTTCTTG+TGG 0.588270 4_3:+6956274 None:intergenic
TTCCTAGAAAATACAAGACA+AGG 0.589706 4_3:-6960539 Msa0626900:intron
ACTTTCAGTGAAATAGCAGA+AGG 0.592480 4_3:-6957315 Msa0626900:CDS
CGGTAGCTAAAAGATTGCGT+TGG 0.596770 4_3:+6960313 None:intergenic
TCAAGCACAAGTTCATGCAG+AGG 0.601190 4_3:-6962122 Msa0626900:CDS
ATTGAAATTCACCATATAGA+GGG 0.601281 4_3:+6958655 None:intergenic
GGAAGTTGAGATGGTTTGTG+AGG 0.602667 4_3:-6960486 Msa0626900:CDS
GAAGTTGAGATGGTTTGTGA+GGG 0.604921 4_3:-6960485 Msa0626900:CDS
AGGTTCATATGGACTGACCT+GGG 0.616385 4_3:-6959586 Msa0626900:CDS
AAGCCGATAATGCTTGCTTG+GGG 0.622310 4_3:-6956397 Msa0626900:CDS
AACATAACTAGCGGTTGATG+TGG 0.623953 4_3:+6962285 None:intergenic
ATAGCAGAGGAGTTTCAGAA+AGG 0.625958 4_3:-6956346 Msa0626900:CDS
GAAAATACAAGACAAGGGCA+AGG 0.626660 4_3:-6960533 Msa0626900:CDS
CTTGCCACAGTCTATAGCAG+AGG 0.636542 4_3:-6956359 Msa0626900:CDS
TAAACTGCTTCAGGTGTTGG+GGG 0.646226 4_3:-6959948 Msa0626900:CDS
GGGTCAGCAAAGAGTAGACG+AGG 0.650329 4_3:-6960361 Msa0626900:CDS
TCCTAGAAAATACAAGACAA+GGG 0.660631 4_3:-6960538 Msa0626900:intron
AACTCCTCTGCTATAGACTG+TGG 0.705660 4_3:+6956355 None:intergenic
AGCCGATAATGCTTGCTTGG+GGG 0.706238 4_3:-6956396 Msa0626900:CDS
GCAGTTTATCCAATGCATCG+TGG 0.708837 4_3:+6959963 None:intergenic
AGAATGCTATTATTGCTGAG+CGG 0.715274 4_3:-6958629 Msa0626900:CDS
ACATAACCGAACATAACTAG+CGG 0.716462 4_3:+6962276 None:intergenic
TTACCTCAGACATAACAACT+CGG 0.745197 4_3:+6960293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATAAGTTTGATTT+TGG - chr4_3:6956750-6956769 Msa0626900:intron 10.0%
!!! GATATTTATACTTTAAAATT+TGG - chr4_3:6961435-6961454 Msa0626900:intron 10.0%
!! ATAATAACAGTTATATGTTT+AGG - chr4_3:6956321-6956340 Msa0626900:CDS 15.0%
!! TGTATTGAACAATTAATTTA+AGG + chr4_3:6956530-6956549 None:intergenic 15.0%
!!! TTTTAGTTAGAATTAGTTTT+GGG - chr4_3:6956943-6956962 Msa0626900:intron 15.0%
!!! TGAAATAAAACTTTGTTATT+AGG + chr4_3:6957889-6957908 None:intergenic 15.0%
!!! AGTATAATTTGATTTATGTT+TGG - chr4_3:6958858-6958877 Msa0626900:intron 15.0%
!! ATTTGTAGAAGTAAAAATAA+GGG + chr4_3:6959265-6959284 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr4_3:6960163-6960182 None:intergenic 15.0%
!! AAATTTACATGAATAAACTA+TGG + chr4_3:6960703-6960722 None:intergenic 15.0%
!!! TTTTTTTGAATTGTTTAGTT+TGG + chr4_3:6960906-6960925 None:intergenic 15.0%
!! AACAATTCAAAAAAATTCTA+TGG - chr4_3:6960911-6960930 Msa0626900:intron 15.0%
!! ATATATTCCAAATTCTATTT+AGG + chr4_3:6960983-6961002 None:intergenic 15.0%
!!! ATACAATATACTACTTATTT+TGG - chr4_3:6961037-6961056 Msa0626900:intron 15.0%
!!! TTTATACTTTAAAATTTGGA+TGG - chr4_3:6961439-6961458 Msa0626900:intron 15.0%
!!! TTCCTTTTAAAAAATAAAAG+AGG - chr4_3:6962158-6962177 Msa0626900:CDS 15.0%
!!! TTCCTCTTTTATTTTTTAAA+AGG + chr4_3:6962163-6962182 None:intergenic 15.0%
!! TGAAATATAAGATAAGAATG+AGG + chr4_3:6956262-6956281 None:intergenic 20.0%
!!! TGAATTGATTTTGAAATGTT+TGG - chr4_3:6956414-6956433 Msa0626900:intron 20.0%
!!! CTTTTAGTTAGAATTAGTTT+TGG - chr4_3:6956942-6956961 Msa0626900:intron 20.0%
!! TGATCAGAAATATTTATGTT+TGG + chr4_3:6956995-6957014 None:intergenic 20.0%
!! CAAATTCAAACTATAATCAT+AGG + chr4_3:6957147-6957166 None:intergenic 20.0%
!! CTATGATTATAGTTTGAATT+TGG - chr4_3:6957145-6957164 Msa0626900:intron 20.0%
!!! TTTAGTCTTCAAACAAATTT+TGG - chr4_3:6957211-6957230 Msa0626900:intron 20.0%
!! ATCAGATAAAAAAGTTCATT+TGG + chr4_3:6957527-6957546 None:intergenic 20.0%
!!! TGAACTTTTTTATCTGATTT+TGG - chr4_3:6957529-6957548 Msa0626900:intron 20.0%
!! TTGATGAACATATGTTAAAT+TGG + chr4_3:6957744-6957763 None:intergenic 20.0%
!! TCTCAAAATTCTTATAGAAA+AGG - chr4_3:6958164-6958183 Msa0626900:intron 20.0%
!! TAATATTATCGTAAAAAAGC+TGG - chr4_3:6959191-6959210 Msa0626900:intron 20.0%
!! GATTTGTAGAAGTAAAAATA+AGG + chr4_3:6959266-6959285 None:intergenic 20.0%
!! GGTGAATTTATATAAAGAAA+CGG + chr4_3:6959288-6959307 None:intergenic 20.0%
!!! TTATGTTCTGAAAAATGAAA+AGG - chr4_3:6959809-6959828 Msa0626900:intron 20.0%
!! ATGATAATAAGATTGTTCAT+AGG - chr4_3:6959938-6959957 Msa0626900:CDS 20.0%
!! TTTAACTGCTAAATTAGAAA+GGG + chr4_3:6960416-6960435 None:intergenic 20.0%
!!! TTTTAACTGCTAAATTAGAA+AGG + chr4_3:6960417-6960436 None:intergenic 20.0%
!! TTCTAATTTAGCAGTTAAAA+AGG - chr4_3:6960417-6960436 Msa0626900:intron 20.0%
!! TCTAATTTAGCAGTTAAAAA+GGG - chr4_3:6960418-6960437 Msa0626900:intron 20.0%
!!! AACATTTTACCGTTAAAAAA+AGG + chr4_3:6961180-6961199 None:intergenic 20.0%
!!! ACCTTTTTTTATTTTTGAAC+AGG - chr4_3:6961973-6961992 Msa0626900:CDS 20.0%
!! CACACTAAATTTACAATTTA+AGG + chr4_3:6962110-6962129 None:intergenic 20.0%
! TATCAGTAACAAATCCAAAA+GGG + chr4_3:6956142-6956161 None:intergenic 25.0%
! TTATCAGTAACAAATCCAAA+AGG + chr4_3:6956143-6956162 None:intergenic 25.0%
! ATGATGATTTAGTGTATGTT+TGG - chr4_3:6956363-6956382 Msa0626900:CDS 25.0%
!!! TTTCTAGTTAGTATCAATTC+CGG + chr4_3:6956468-6956487 None:intergenic 25.0%
!! AGGCTAAAAATTGATTCTAA+GGG + chr4_3:6956510-6956529 None:intergenic 25.0%
!! AAGGCTAAAAATTGATTCTA+AGG + chr4_3:6956511-6956530 None:intergenic 25.0%
!!! TTTGCATTCAACTCATTTTT+AGG - chr4_3:6956576-6956595 Msa0626900:intron 25.0%
! CAGTTTATGTTTGAATCATA+TGG - chr4_3:6956837-6956856 Msa0626900:intron 25.0%
!! ACCAAGTATTTTATAACACA+TGG - chr4_3:6957068-6957087 Msa0626900:intron 25.0%
! TCCATGTGTTATAAAATACT+TGG + chr4_3:6957072-6957091 None:intergenic 25.0%
!! TAGTTTGAATTTGGTCATTT+TGG - chr4_3:6957154-6957173 Msa0626900:intron 25.0%
! GGAAGACTTAAAAAGAATAA+CGG - chr4_3:6957175-6957194 Msa0626900:intron 25.0%
!!! TCATTTTCATTAGCTGTTTT+TGG - chr4_3:6957454-6957473 Msa0626900:intron 25.0%
!! GATGATGTTTTTCATTTAGT+TGG - chr4_3:6957563-6957582 Msa0626900:intron 25.0%
!! TAAAGTCTTTGTTTGGATTA+TGG + chr4_3:6957929-6957948 None:intergenic 25.0%
!!! ATTTCTTTTTAAGGTCTGTT+TGG + chr4_3:6958459-6958478 None:intergenic 25.0%
! AAACAGACCTTAAAAAGAAA+TGG - chr4_3:6958458-6958477 Msa0626900:intron 25.0%
! TATACTCAAATCACTTTAAC+CGG + chr4_3:6958844-6958863 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr4_3:6959014-6959033 None:intergenic 25.0%
!! TTTGTCTTTTACAATATCCT+TGG + chr4_3:6959130-6959149 None:intergenic 25.0%
!! ACAAAAATCTCAAAAGTACA+TGG - chr4_3:6959145-6959164 Msa0626900:intron 25.0%
!! TTTTCTCAAATTCACGATTT+TGG - chr4_3:6959238-6959257 Msa0626900:intron 25.0%
! ATATAGAAAACACACAGAAT+TGG + chr4_3:6959309-6959328 None:intergenic 25.0%
! ATTGAAATTCACCATATAGA+GGG + chr4_3:6959502-6959521 None:intergenic 25.0%
! TTAACTGCTAAATTAGAAAG+GGG + chr4_3:6960415-6960434 None:intergenic 25.0%
! CTAATTTAGCAGTTAAAAAG+GGG - chr4_3:6960419-6960438 Msa0626900:intron 25.0%
!!! AGCAAAATTTAGTTTTACTC+AGG + chr4_3:6960737-6960756 None:intergenic 25.0%
!!! AAATTTTGCTGACTTAGAAT+TGG - chr4_3:6960747-6960766 Msa0626900:intron 25.0%
!! TCCTTAATTTGGAAATAGAA+AGG - chr4_3:6961082-6961101 Msa0626900:intron 25.0%
!! CCTTAATTTGGAAATAGAAA+GGG - chr4_3:6961083-6961102 Msa0626900:intron 25.0%
! AAATTGTCCATATCTTTACA+AGG - chr4_3:6961148-6961167 Msa0626900:intron 25.0%
!!! AGGATTAGACCTTTTTTTAA+CGG - chr4_3:6961168-6961187 Msa0626900:intron 25.0%
!! TAAGCAATATAACATTGACT+TGG + chr4_3:6961343-6961362 None:intergenic 25.0%
! AATAAGCTTAAAACAGCATA+TGG + chr4_3:6961549-6961568 None:intergenic 25.0%
! ATATAGTCTATCAGAGTTTA+TGG + chr4_3:6961573-6961592 None:intergenic 25.0%
!! AATTTAAGCTTGATGTTTTG+AGG + chr4_3:6961838-6961857 None:intergenic 25.0%
! ATCAAGCTTAAATTGATAGA+AGG - chr4_3:6961844-6961863 Msa0626900:intron 25.0%
! GCCTGTTCAAAAATAAAAAA+AGG + chr4_3:6961977-6961996 None:intergenic 25.0%
! TACAATTTAAGGAAAAACTC+AGG + chr4_3:6962099-6962118 None:intergenic 25.0%
! AAGGAACAAACAACATATAT+AGG + chr4_3:6962144-6962163 None:intergenic 25.0%
!!! GAAATAGATAATGGAATGTT+TGG + chr4_3:6962243-6962262 None:intergenic 25.0%
! ATAAAGGTTTCTAATAGACT+TGG + chr4_3:6962273-6962292 None:intergenic 25.0%
! AGAAACCTTTATGCTAATTA+AGG - chr4_3:6962281-6962300 Msa0626900:five_prime_UTR 25.0%
TAGTAGTTGAAGAAATAGCA+AGG + chr4_3:6955986-6956005 None:intergenic 30.0%
! ATCATCTTGATCATTGCTTT+TGG + chr4_3:6956105-6956124 None:intergenic 30.0%
! AAATCATCATTCAACCCTTT+TGG - chr4_3:6956125-6956144 Msa0626900:exon 30.0%
! AGGATTTTCAGACAATTGAA+TGG + chr4_3:6956183-6956202 None:intergenic 30.0%
!! CAATGCTTTTTACTTTCCTT+TGG - chr4_3:6956280-6956299 Msa0626900:intron 30.0%
AGACTCAAAAGAAAAACCAA+AGG + chr4_3:6956299-6956318 None:intergenic 30.0%
!! AGTAGAATTGATTTTGTCTC+CGG - chr4_3:6956446-6956465 Msa0626900:intron 30.0%
ATGGCTGTGTACTTAAAATT+TGG - chr4_3:6956673-6956692 Msa0626900:intron 30.0%
TGGCTGTGTACTTAAAATTT+GGG - chr4_3:6956674-6956693 Msa0626900:intron 30.0%
!! AAAAGCGTGTTTTGTTCAAA+AGG - chr4_3:6956702-6956721 Msa0626900:intron 30.0%
!! TTTGGTTGAAAGTTTGTTGA+AGG - chr4_3:6956768-6956787 Msa0626900:intron 30.0%
AAGGTGAAGTAATTTATGTC+TGG - chr4_3:6956787-6956806 Msa0626900:intron 30.0%
!! GCTAATATTTCTAGCTTCTA+CGG + chr4_3:6956923-6956942 None:intergenic 30.0%
! TTTTCACAGCATACATTTTG+AGG + chr4_3:6957299-6957318 None:intergenic 30.0%
TGTATGCTGTGAAAACAAAA+TGG - chr4_3:6957304-6957323 Msa0626900:CDS 30.0%
GTATGCTGTGAAAACAAAAT+GGG - chr4_3:6957305-6957324 Msa0626900:CDS 30.0%
GCTAATGAAAATGAACTATC+AGG + chr4_3:6957448-6957467 None:intergenic 30.0%
TTCCTAGAAAATACAAGACA+AGG - chr4_3:6957615-6957634 Msa0626900:intron 30.0%
TCCTAGAAAATACAAGACAA+GGG - chr4_3:6957616-6957635 Msa0626900:intron 30.0%
TACGGATCATATGTAAAATC+CGG - chr4_3:6957646-6957665 Msa0626900:intron 30.0%
!!! TTTTTTCCTTTCCTTTTTGC+AGG - chr4_3:6957772-6957791 Msa0626900:intron 30.0%
! TTTTTCCTTTCCTTTTTGCA+GGG - chr4_3:6957773-6957792 Msa0626900:intron 30.0%
TACGAGTTAAAGTCTTTGTT+TGG + chr4_3:6957936-6957955 None:intergenic 30.0%
!!! GCTATTTTTATACGATATCG+TGG + chr4_3:6958327-6958346 None:intergenic 30.0%
! AGTGTAGCCATTTCTTTTTA+AGG + chr4_3:6958468-6958487 None:intergenic 30.0%
TATGATCACATTTCTCCTTA+AGG - chr4_3:6958535-6958554 Msa0626900:intron 30.0%
ATGATCACATTTCTCCTTAA+GGG - chr4_3:6958536-6958555 Msa0626900:intron 30.0%
TATCTTGCTTGAATTCTTCA+AGG + chr4_3:6958594-6958613 None:intergenic 30.0%
CGTCTAGGAAACTATAATAT+AGG + chr4_3:6958740-6958759 None:intergenic 30.0%
! TTGATTTGAGTGTGTTGTAT+GGG - chr4_3:6958766-6958785 Msa0626900:intron 30.0%
!! TTGATTTGCAAAATTGATCC+CGG - chr4_3:6958822-6958841 Msa0626900:intron 30.0%
ATACTCAAATCACTTTAACC+GGG + chr4_3:6958843-6958862 None:intergenic 30.0%
TGGATACATTCATGTAAAAG+CGG - chr4_3:6958878-6958897 Msa0626900:intron 30.0%
TAACTAGAAGCTAGAATTTG+GGG + chr4_3:6958950-6958969 None:intergenic 30.0%
CTAACTAGAAGCTAGAATTT+GGG + chr4_3:6958951-6958970 None:intergenic 30.0%
TCTAACTAGAAGCTAGAATT+TGG + chr4_3:6958952-6958971 None:intergenic 30.0%
! AATTTTGTCTTTTGCAAGAG+TGG - chr4_3:6959044-6959063 Msa0626900:intron 30.0%
TCGTGAATTTGAGAAAATAG+AGG + chr4_3:6959235-6959254 None:intergenic 30.0%
ATGCAGCACATCATTTAATT+AGG + chr4_3:6959344-6959363 None:intergenic 30.0%
!! AAGAAACAAAAAGGCATCAA+AGG + chr4_3:6959471-6959490 None:intergenic 30.0%
!! ATGCCTTTTTGTTTCTTTCT+AGG - chr4_3:6959474-6959493 Msa0626900:intron 30.0%
GAACCTAGAAAGAAACAAAA+AGG + chr4_3:6959480-6959499 None:intergenic 30.0%
CATTGAAATTCACCATATAG+AGG + chr4_3:6959503-6959522 None:intergenic 30.0%
!!! AATGCAGTTTTGGATACATA+CGG + chr4_3:6959569-6959588 None:intergenic 30.0%
! ACAAAGATCAAATGCAGTTT+TGG + chr4_3:6959579-6959598 None:intergenic 30.0%
! CTTTACTCTAAAAGCAAGTT+TGG + chr4_3:6959698-6959717 None:intergenic 30.0%
ATGAAAAGGCTGATGTTTAT+CGG - chr4_3:6959823-6959842 Msa0626900:intron 30.0%
! TGTTTATCGGTTACCTTATT+TGG - chr4_3:6959836-6959855 Msa0626900:intron 30.0%
TGATTGACAGTAATAAGGTA+CGG - chr4_3:6960311-6960330 Msa0626900:CDS 30.0%
TCCTGTTGTAAAATTAAGCT+CGG - chr4_3:6960513-6960532 Msa0626900:CDS 30.0%
!!! GTTTTTTCCTCTGTATTGTT+TGG + chr4_3:6960628-6960647 None:intergenic 30.0%
AATACAGAGGAAAAAACACT+TGG - chr4_3:6960631-6960650 Msa0626900:intron 30.0%
AATAATCAAGCTTCTGATGT+TGG - chr4_3:6960771-6960790 Msa0626900:intron 30.0%
ATAATCAAGCTTCTGATGTT+GGG - chr4_3:6960772-6960791 Msa0626900:intron 30.0%
!! TGAATTGTTTAGTTTGGTGA+AGG + chr4_3:6960900-6960919 None:intergenic 30.0%
CACTACACCTAAATAGAATT+TGG - chr4_3:6960973-6960992 Msa0626900:intron 30.0%
CCCTTTCTATTTCCAAATTA+AGG + chr4_3:6961086-6961105 None:intergenic 30.0%
GTCTAATCCTTGTAAAGATA+TGG + chr4_3:6961158-6961177 None:intergenic 30.0%
! AAATATGTTTCAGTTGATGC+AGG - chr4_3:6961362-6961381 Msa0626900:intron 30.0%
!! ACTTATGATAGTTCTAGGTT+TGG + chr4_3:6961478-6961497 None:intergenic 30.0%
CAAGTACTTATGATAGTTCT+AGG + chr4_3:6961483-6961502 None:intergenic 30.0%
AGAACTATCATAAGTACTTG+TGG - chr4_3:6961483-6961502 Msa0626900:intron 30.0%
GAACTATCATAAGTACTTGT+GGG - chr4_3:6961484-6961503 Msa0626900:intron 30.0%
!! TTGTTCTTGTTGTTGTAGAT+GGG - chr4_3:6961732-6961751 Msa0626900:intron 30.0%
!! TGAGAGTAGCTTTAACATAT+AGG - chr4_3:6961895-6961914 Msa0626900:intron 30.0%
! AAAGCATCAATAACTTTCTC+AGG + chr4_3:6961999-6962018 None:intergenic 30.0%
!!! TTTTGATTTGAGTAAGGACA+TGG + chr4_3:6962069-6962088 None:intergenic 30.0%
ATGTCCTTACTCAAATCAAA+AGG - chr4_3:6962068-6962087 Msa0626900:CDS 30.0%
!!! CTATCCTTTTGATTTGAGTA+AGG + chr4_3:6962075-6962094 None:intergenic 30.0%
GGATGTTTGGAAATAGATAA+TGG + chr4_3:6962252-6962271 None:intergenic 30.0%
TTCTAATAGACTTGGATGTT+TGG + chr4_3:6962265-6962284 None:intergenic 30.0%
CTCAACCTTAATTAGCATAA+AGG + chr4_3:6962289-6962308 None:intergenic 30.0%
TTATGCTAATTAAGGTTGAG+AGG - chr4_3:6962289-6962308 Msa0626900:five_prime_UTR 30.0%
ACATAACCGAACATAACTAG+CGG + chr4_3:6955881-6955900 None:intergenic 35.0%
TGCAAAACAAAGAGCTTCAA+TGG + chr4_3:6955925-6955944 None:intergenic 35.0%
!!! AGCTCTTTGTTTTGCAACAA+TGG - chr4_3:6955929-6955948 Msa0626900:three_prime_UTR 35.0%
GAAATAGCAAGGTTTAGTGT+TGG + chr4_3:6955975-6955994 None:intergenic 35.0%
!! TGTATGTTTGGTTCTACTTC+CGG - chr4_3:6956375-6956394 Msa0626900:CDS 35.0%
! TCAAATCATTTTGCCTACTC+CGG + chr4_3:6956397-6956416 None:intergenic 35.0%
GGAGACAAAATCAATTCTAC+TGG + chr4_3:6956447-6956466 None:intergenic 35.0%
AGTTAAGTGTGTGTTTGGTT+TGG + chr4_3:6956638-6956657 None:intergenic 35.0%
CAACTAGTTAAGTGTGTGTT+TGG + chr4_3:6956643-6956662 None:intergenic 35.0%
AACTAGTTGTGTAAGCAACA+TGG - chr4_3:6956654-6956673 Msa0626900:intron 35.0%
!!! GTTAGAATTAGTTTTGGGAC+TGG - chr4_3:6956948-6956967 Msa0626900:intron 35.0%
TCAGAATCTCATGTTTGGAT+TGG + chr4_3:6957027-6957046 None:intergenic 35.0%
ATCTCTCAGAATCTCATGTT+TGG + chr4_3:6957032-6957051 None:intergenic 35.0%
!!! AAATTTTGGCTTAGCCATCT+AGG - chr4_3:6957225-6957244 Msa0626900:intron 35.0%
AGGTCACTGATCAAACAAAA+AGG + chr4_3:6957279-6957298 None:intergenic 35.0%
ACGGATCATATGTAAAATCC+GGG - chr4_3:6957647-6957666 Msa0626900:intron 35.0%
GGAACAATTGTATTCCTTCA+CGG - chr4_3:6957814-6957833 Msa0626900:intron 35.0%
TTACCTCAGACATAACAACT+CGG + chr4_3:6957864-6957883 None:intergenic 35.0%
TTTCTCCCTCTTAAAACAGT+TGG - chr4_3:6957985-6958004 Msa0626900:intron 35.0%
!!! ATCTGCCAACTGTTTTAAGA+GGG + chr4_3:6957993-6958012 None:intergenic 35.0%
!! TATCTGCCAACTGTTTTAAG+AGG + chr4_3:6957994-6958013 None:intergenic 35.0%
TTAAAACAGTTGGCAGATAC+AGG - chr4_3:6957995-6958014 Msa0626900:intron 35.0%
GTGTAATTAAAACCGTATCC+TGG + chr4_3:6958076-6958095 None:intergenic 35.0%
!!! GGATACGGTTTTAATTACAC+AGG - chr4_3:6958076-6958095 Msa0626900:intron 35.0%
! TACACAGGTGTTATCATGAA+TGG - chr4_3:6958091-6958110 Msa0626900:intron 35.0%
ACCTGAACAACTAGGTAAAA+CGG + chr4_3:6958240-6958259 None:intergenic 35.0%
CTTTAGATACCTGAACAACT+AGG + chr4_3:6958248-6958267 None:intergenic 35.0%
AACCTACAAGAAATCCCTTA+AGG + chr4_3:6958553-6958572 None:intergenic 35.0%
GGATTTCTTGTAGGTTCATA+TGG - chr4_3:6958557-6958576 Msa0626900:intron 35.0%
AAGTTTAGACGTGCATTCAT+TGG + chr4_3:6958707-6958726 None:intergenic 35.0%
TCAAATCAAGAGATACGTCT+AGG + chr4_3:6958755-6958774 None:intergenic 35.0%
! CTTGATTTGAGTGTGTTGTA+TGG - chr4_3:6958765-6958784 Msa0626900:intron 35.0%
GGATACATTCATGTAAAAGC+GGG - chr4_3:6958879-6958898 Msa0626900:intron 35.0%
! CTTCTAGTTAGAATCAATCG+TGG - chr4_3:6958960-6958979 Msa0626900:intron 35.0%
ACTTAATCACTTAAAGCCGA+TGG - chr4_3:6959079-6959098 Msa0626900:intron 35.0%
TAGTGCTTATGCTTATCCAT+CGG + chr4_3:6959098-6959117 None:intergenic 35.0%
! GTCTTTTACAATATCCTTGG+TGG + chr4_3:6959127-6959146 None:intergenic 35.0%
AGAATGCTATTATTGCTGAG+CGG - chr4_3:6959525-6959544 Msa0626900:CDS 35.0%
!!! ATGCAGTTTTGGATACATAC+GGG + chr4_3:6959568-6959587 None:intergenic 35.0%
TTATGTCACTAACCAAATCC+AGG + chr4_3:6959873-6959892 None:intergenic 35.0%
CTTCCTTCTAGCATATACAT+AGG + chr4_3:6959965-6959984 None:intergenic 35.0%
! TGGAGGATAACCTAGTATTT+TGG - chr4_3:6960052-6960071 Msa0626900:intron 35.0%
! GGAGGATAACCTAGTATTTT+GGG - chr4_3:6960053-6960072 Msa0626900:intron 35.0%
! CATTTGTTGATGTCACACAT+TGG - chr4_3:6960201-6960220 Msa0626900:intron 35.0%
ACACATTCGATCATAAGTGT+CGG - chr4_3:6960226-6960245 Msa0626900:intron 35.0%
CCTTATTACTGTCAATCATG+AGG + chr4_3:6960309-6960328 None:intergenic 35.0%
CCTCATGATTGACAGTAATA+AGG - chr4_3:6960306-6960325 Msa0626900:CDS 35.0%
AGAGACTTATCTTACCAAAC+CGG - chr4_3:6960383-6960402 Msa0626900:intron 35.0%
ATTTAGCAGTTAAAAAGGGG+TGG - chr4_3:6960422-6960441 Msa0626900:intron 35.0%
TTTAGCAGTTAAAAAGGGGT+GGG - chr4_3:6960423-6960442 Msa0626900:intron 35.0%
! GAGCTTAATTTTACAACAGG+AGG + chr4_3:6960514-6960533 None:intergenic 35.0%
GCCATGGGATTCTAATATTT+GGG - chr4_3:6960535-6960554 Msa0626900:CDS 35.0%
TCCCAAATATTAGAATCCCA+TGG + chr4_3:6960539-6960558 None:intergenic 35.0%
ACTTTCAGTGAAATAGCAGA+AGG - chr4_3:6960839-6960858 Msa0626900:intron 35.0%
GAATTGATAAGCTGTGATAG+TGG - chr4_3:6960933-6960952 Msa0626900:intron 35.0%
CAACTCAAGCATCCTTAATT+TGG - chr4_3:6961071-6961090 Msa0626900:intron 35.0%
ATTTGGAAATAGAAAGGGCA+TGG - chr4_3:6961088-6961107 Msa0626900:intron 35.0%
!! AAACTGTTGACTTGGTTGTT+GGG + chr4_3:6961248-6961267 None:intergenic 35.0%
!! AAAACTGTTGACTTGGTTGT+TGG + chr4_3:6961249-6961268 None:intergenic 35.0%
! CTAGCAAAAAACTGTTGACT+TGG + chr4_3:6961256-6961275 None:intergenic 35.0%
TTCTTCACCTATGATGTACT+CGG + chr4_3:6961286-6961305 None:intergenic 35.0%
!! ATATAACATTGACTTGGTGC+TGG + chr4_3:6961337-6961356 None:intergenic 35.0%
!! ATAGTTCTAGGTTTGGATAC+TGG + chr4_3:6961471-6961490 None:intergenic 35.0%
! CTACGTGTTTTATCCAAAGA+AGG - chr4_3:6961683-6961702 Msa0626900:intron 35.0%
TTATTCTACTGTGCCTTCTT+TGG + chr4_3:6961699-6961718 None:intergenic 35.0%
! AAAGAAGGCACAGTAGAATA+AGG - chr4_3:6961698-6961717 Msa0626900:intron 35.0%
!! CTTGTTCTTGTTGTTGTAGA+TGG - chr4_3:6961731-6961750 Msa0626900:intron 35.0%
CTTAAATTGATAGAAGGAGC+TGG - chr4_3:6961850-6961869 Msa0626900:intron 35.0%
! AACATAACTAGCGGTTGATG+TGG + chr4_3:6955872-6955891 None:intergenic 40.0%
CATCAACCGCTAGTTATGTT+CGG - chr4_3:6955872-6955891 Msa0626900:three_prime_UTR 40.0%
CAGACAATTGAATGGCACTA+CGG + chr4_3:6956175-6956194 None:intergenic 40.0%
!! TTCTAGCTTCTACGGTAAGA+TGG + chr4_3:6956915-6956934 None:intergenic 40.0%
AAGGCCTATGGAAGAATAAG+AGG - chr4_3:6957252-6957271 Msa0626900:intron 40.0%
AGGTCCTCTTATTCTTCCAT+AGG + chr4_3:6957259-6957278 None:intergenic 40.0%
ACTGAACAGAAAACAGATCG+TGG + chr4_3:6957412-6957431 None:intergenic 40.0%
! GCCCTTGTCTTGTATTTTCT+AGG + chr4_3:6957620-6957639 None:intergenic 40.0%
GAAAATACAAGACAAGGGCA+AGG - chr4_3:6957621-6957640 Msa0626900:intron 40.0%
TAAAATCCGGGAAGTTGAGA+TGG - chr4_3:6957659-6957678 Msa0626900:intron 40.0%
! GAAGTTGAGATGGTTTGTGA+GGG - chr4_3:6957669-6957688 Msa0626900:intron 40.0%
AAACCAAATCCTATCCAGTC+AGG + chr4_3:6958037-6958056 None:intergenic 40.0%
TGCATTGGATAAACTGCTTC+AGG - chr4_3:6958197-6958216 Msa0626900:intron 40.0%
GATAAACTGCTTCAGGTGTT+GGG - chr4_3:6958204-6958223 Msa0626900:intron 40.0%
! ATAAACTGCTTCAGGTGTTG+GGG - chr4_3:6958205-6958224 Msa0626900:intron 40.0%
! TCCGTTTTACCTAGTTGTTC+AGG - chr4_3:6958236-6958255 Msa0626900:intron 40.0%
CTCCTTAAGGGATTTCTTGT+AGG - chr4_3:6958548-6958567 Msa0626900:intron 40.0%
!! ATGGGAGATGAGCTTGTTAA+TGG + chr4_3:6958641-6958660 None:intergenic 40.0%
TGCTGAAATAGTCCAGGAAT+GGG + chr4_3:6958659-6958678 None:intergenic 40.0%
GAATGCACGTCTAAACTTGA+TGG - chr4_3:6958709-6958728 Msa0626900:intron 40.0%
! GTGTGTTGTATGGGATTTTG+TGG - chr4_3:6958775-6958794 Msa0626900:intron 40.0%
CTAGTTAGAATCAATCGTGG+AGG - chr4_3:6958963-6958982 Msa0626900:intron 40.0%
AAGCACTATGTTTACCACCA+AGG - chr4_3:6959110-6959129 Msa0626900:intron 40.0%
! AGCTGGCTTAAATCGAGTTA+TGG - chr4_3:6959208-6959227 Msa0626900:intron 40.0%
CTTTCTAGGTTCCCTCTATA+TGG - chr4_3:6959488-6959507 Msa0626900:intron 40.0%
GCTCAGCAATAATAGCATTC+TGG + chr4_3:6959526-6959545 None:intergenic 40.0%
GGACCTATGTATATGCTAGA+AGG - chr4_3:6959959-6959978 Msa0626900:CDS 40.0%
TACTAGGTTATCCTCCAACT+AGG + chr4_3:6960049-6960068 None:intergenic 40.0%
TACACAGCTCCCAAAATACT+AGG + chr4_3:6960065-6960084 None:intergenic 40.0%
ATCATGAGGAATATACGCTG+AGG + chr4_3:6960295-6960314 None:intergenic 40.0%
ACAGTAATAAGGTACGGAGA+GGG - chr4_3:6960317-6960336 Msa0626900:CDS 40.0%
ATGTATCTCTTCGTACGAGA+AGG - chr4_3:6960345-6960364 Msa0626900:CDS 40.0%
TTAGCAGTTAAAAAGGGGTG+GGG - chr4_3:6960424-6960443 Msa0626900:intron 40.0%
GACTAGGTAAGCCATAATGA+GGG + chr4_3:6960460-6960479 None:intergenic 40.0%
CTTACCTAGTCGTCTATATC+AGG - chr4_3:6960469-6960488 Msa0626900:intron 40.0%
! GCCGAGCTTAATTTTACAAC+AGG + chr4_3:6960517-6960536 None:intergenic 40.0%
TGTAAAATTAAGCTCGGCCA+TGG - chr4_3:6960519-6960538 Msa0626900:CDS 40.0%
GTAAAATTAAGCTCGGCCAT+GGG - chr4_3:6960520-6960539 Msa0626900:CDS 40.0%
GGCCATGGGATTCTAATATT+TGG - chr4_3:6960534-6960553 Msa0626900:CDS 40.0%
! TTGTTTGGTAGCAAGTCTCT+CGG + chr4_3:6960613-6960632 None:intergenic 40.0%
CTTGCTACCAAACAATACAG+AGG - chr4_3:6960618-6960637 Msa0626900:intron 40.0%
GCAAGAAAAGCCAACTTCAA+CGG - chr4_3:6960815-6960834 Msa0626900:intron 40.0%
!! ACTGAAAGTACCGTTGAAGT+TGG + chr4_3:6960828-6960847 None:intergenic 40.0%
CAGAAGGATTTGCATCTAAC+AGG - chr4_3:6960855-6960874 Msa0626900:intron 40.0%
! TAGAAAGGGCATGGTGAAAT+TGG - chr4_3:6961097-6961116 Msa0626900:intron 40.0%
! AGAAAGGGCATGGTGAAATT+GGG - chr4_3:6961098-6961117 Msa0626900:intron 40.0%
! CCTACAACTTGTTCTGAGTT+AGG + chr4_3:6961124-6961143 None:intergenic 40.0%
CCTAACTCAGAACAAGTTGT+AGG - chr4_3:6961121-6961140 Msa0626900:intron 40.0%
CGGTAAAATGTTAGTGCTGT+CGG - chr4_3:6961188-6961207 Msa0626900:intron 40.0%
TCGGTATTATGCTGAGTGTA+GGG - chr4_3:6961207-6961226 Msa0626900:intron 40.0%
!! AACTGTTGACTTGGTTGTTG+GGG + chr4_3:6961247-6961266 None:intergenic 40.0%
ATTCGTACCGAGTACATCAT+AGG - chr4_3:6961276-6961295 Msa0626900:intron 40.0%
TACTTCTGACCAAGAAGCTT+GGG - chr4_3:6961308-6961327 Msa0626900:intron 40.0%
AAAGTCTCTTGAACCTGAAG+TGG - chr4_3:6961400-6961419 Msa0626900:intron 40.0%
TTGAACCTGAAGTGGTAAAC+TGG - chr4_3:6961408-6961427 Msa0626900:intron 40.0%
CAAAACCAGTTTACCACTTC+AGG + chr4_3:6961416-6961435 None:intergenic 40.0%
GGCAAAGGCTTATCGTATAA+GGG + chr4_3:6961651-6961670 None:intergenic 40.0%
TGGCAAAGGCTTATCGTATA+AGG + chr4_3:6961652-6961671 None:intergenic 40.0%
TAGTTGAGCAGTTATGGCAA+AGG + chr4_3:6961666-6961685 None:intergenic 40.0%
AACACGTAGTTGAGCAGTTA+TGG + chr4_3:6961672-6961691 None:intergenic 40.0%
ATAAGCCGATAATGCTTGCT+TGG - chr4_3:6961755-6961774 Msa0626900:intron 40.0%
TAAGCCGATAATGCTTGCTT+GGG - chr4_3:6961756-6961775 Msa0626900:intron 40.0%
ATAGCAGAGGAGTTTCAGAA+AGG - chr4_3:6961808-6961827 Msa0626900:intron 40.0%
GTCATATGCCACAAGAAGAT+TGG - chr4_3:6961872-6961891 Msa0626900:intron 40.0%
TACTCTCACCAATCTTCTTG+TGG + chr4_3:6961883-6961902 None:intergenic 40.0%
ACAACCAAAACTGACCTTGA+AGG - chr4_3:6962040-6962059 Msa0626900:CDS 40.0%
! GATTCCTTCAAGGTCAGTTT+TGG + chr4_3:6962047-6962066 None:intergenic 40.0%
TAAGGACATGGATTCCTTCA+AGG + chr4_3:6962057-6962076 None:intergenic 40.0%
TCAAGCACAAGTTCATGCAG+AGG - chr4_3:6956032-6956051 Msa0626900:three_prime_UTR 45.0%
TCTGAAAATCCTGCTGAAGC+TGG - chr4_3:6956191-6956210 Msa0626900:intron 45.0%
!! TTTGGTTCTACTTCCGGAGT+AGG - chr4_3:6956381-6956400 Msa0626900:CDS 45.0%
GCTTAGCCATCTAGGAACTA+AGG - chr4_3:6957233-6957252 Msa0626900:intron 45.0%
CATAGGCCTTAGTTCCTAGA+TGG + chr4_3:6957242-6957261 None:intergenic 45.0%
CATCTAGGAACTAAGGCCTA+TGG - chr4_3:6957240-6957259 Msa0626900:intron 45.0%
CAAGACAAGGGCAAGGAATA+CGG - chr4_3:6957628-6957647 Msa0626900:intron 45.0%
CACAAACCATCTCAACTTCC+CGG + chr4_3:6957668-6957687 None:intergenic 45.0%
! GGAAGTTGAGATGGTTTGTG+AGG - chr4_3:6957668-6957687 Msa0626900:intron 45.0%
! AGATGGTTTGTGAGGGAAAC+TGG - chr4_3:6957676-6957695 Msa0626900:intron 45.0%
TCTTTGCTGACCCTGCAAAA+AGG + chr4_3:6957786-6957805 None:intergenic 45.0%
CGGTAGCTAAAAGATTGCGT+TGG + chr4_3:6957844-6957863 None:intergenic 45.0%
CTACCGAGTTGTTATGTCTG+AGG - chr4_3:6957858-6957877 Msa0626900:intron 45.0%
TTAAAACCGTATCCTGGCTG+TGG + chr4_3:6958070-6958089 None:intergenic 45.0%
AAAGGAGTTCCACGATGCAT+TGG - chr4_3:6958182-6958201 Msa0626900:intron 45.0%
GCAGTTTATCCAATGCATCG+TGG + chr4_3:6958194-6958213 None:intergenic 45.0%
GGATAAACTGCTTCAGGTGT+TGG - chr4_3:6958203-6958222 Msa0626900:intron 45.0%
!! TAAACTGCTTCAGGTGTTGG+GGG - chr4_3:6958206-6958225 Msa0626900:intron 45.0%
! TAGGTTCATATGGACTGACC+TGG - chr4_3:6958567-6958586 Msa0626900:intron 45.0%
! AGGTTCATATGGACTGACCT+GGG - chr4_3:6958568-6958587 Msa0626900:intron 45.0%
CTGCTGAAATAGTCCAGGAA+TGG + chr4_3:6958660-6958679 None:intergenic 45.0%
CTTAGCTGCTGAAATAGTCC+AGG + chr4_3:6958665-6958684 None:intergenic 45.0%
CTGGACTATTTCAGCAGCTA+AGG - chr4_3:6958663-6958682 Msa0626900:intron 45.0%
TTTCAGCAGCTAAGGTTAGC+TGG - chr4_3:6958671-6958690 Msa0626900:intron 45.0%
GCTGAGCGGTTTATTGAAAG+AGG - chr4_3:6959539-6959558 Msa0626900:CDS 45.0%
TTGTCTGAAAACGCAAGTCC+AGG - chr4_3:6959994-6960013 Msa0626900:intron 45.0%
ATGCGATGTCCATGCTTCAT+AGG + chr4_3:6960129-6960148 None:intergenic 45.0%
! ACTTTATGCGCCCCTTTTCT+AGG - chr4_3:6960253-6960272 Msa0626900:intron 45.0%
! CTTTATGCGCCCCTTTTCTA+GGG - chr4_3:6960254-6960273 Msa0626900:intron 45.0%
GACAGTAATAAGGTACGGAG+AGG - chr4_3:6960316-6960335 Msa0626900:CDS 45.0%
CAGTAATAAGGTACGGAGAG+GGG - chr4_3:6960318-6960337 Msa0626900:CDS 45.0%
TGCTAAATTAGAAAGGGGCG+AGG + chr4_3:6960410-6960429 None:intergenic 45.0%
TAGCAGTTAAAAAGGGGTGG+GGG - chr4_3:6960425-6960444 Msa0626900:intron 45.0%
CGACTAGGTAAGCCATAATG+AGG + chr4_3:6960461-6960480 None:intergenic 45.0%
AGCACCTGATATAGACGACT+AGG + chr4_3:6960476-6960495 None:intergenic 45.0%
TTGAGGTTCAGGGACTGTTT+CGG + chr4_3:6960562-6960581 None:intergenic 45.0%
! CCTTTTAGGCTTGAGGTTCA+GGG + chr4_3:6960572-6960591 None:intergenic 45.0%
!! AGCTGTGATAGTGGTAGAGA+AGG - chr4_3:6960942-6960961 Msa0626900:intron 45.0%
! GATAGTGGTAGAGAAGGCTA+AGG - chr4_3:6960948-6960967 Msa0626900:intron 45.0%
GTCGGTATTATGCTGAGTGT+AGG - chr4_3:6961206-6961225 Msa0626900:intron 45.0%
CAAGCTTCTTGGTCAGAAGT+AGG + chr4_3:6961309-6961328 None:intergenic 45.0%
CTACTTCTGACCAAGAAGCT+TGG - chr4_3:6961307-6961326 Msa0626900:intron 45.0%
AAGCCGATAATGCTTGCTTG+GGG - chr4_3:6961757-6961776 Msa0626900:intron 45.0%
AACTCCTCTGCTATAGACTG+TGG + chr4_3:6961802-6961821 None:intergenic 45.0%
TGAATGGCACTACGGCTTGA+TGG + chr4_3:6956167-6956186 None:intergenic 50.0%
GCTGACCCTGCAAAAAGGAA+AGG + chr4_3:6957781-6957800 None:intergenic 50.0%
GCTTGAATTCTTCAAGGCCC+AGG + chr4_3:6958588-6958607 None:intergenic 50.0%
ACAAGCTCATCTCCCATTCC+TGG - chr4_3:6958644-6958663 Msa0626900:CDS 50.0%
CGATGTCCATGCTTCATAGG+CGG + chr4_3:6960126-6960145 None:intergenic 50.0%
TCACGCCCAACCCTAGAAAA+GGG + chr4_3:6960267-6960286 None:intergenic 50.0%
TTCACGCCCAACCCTAGAAA+AGG + chr4_3:6960268-6960287 None:intergenic 50.0%
AATTAGAAAGGGGCGAGGAC+CGG + chr4_3:6960405-6960424 None:intergenic 50.0%
CCCTGAACCTCAAGCCTAAA+AGG - chr4_3:6960569-6960588 Msa0626900:intron 50.0%
! GCCTTTTAGGCTTGAGGTTC+AGG + chr4_3:6960573-6960592 None:intergenic 50.0%
ACCTCAAGCCTAAAAGGCGA+AGG - chr4_3:6960575-6960594 Msa0626900:intron 50.0%
!!! TGAGAGTGCCTTCGCCTTTT+AGG + chr4_3:6960586-6960605 None:intergenic 50.0%
!! AAAGGCGAAGGCACTCTCAT+TGG - chr4_3:6960587-6960606 Msa0626900:intron 50.0%
!! TGTTGACTTGGTTGTTGGGG+TGG + chr4_3:6961244-6961263 None:intergenic 50.0%
!! TGCTGGTTTCCCAAGCTTCT+TGG + chr4_3:6961320-6961339 None:intergenic 50.0%
AGCCGATAATGCTTGCTTGG+GGG - chr4_3:6961758-6961777 Msa0626900:intron 50.0%
AGCCCCCAAGCAAGCATTAT+CGG + chr4_3:6961763-6961782 None:intergenic 50.0%
CTTGCCACAGTCTATAGCAG+AGG - chr4_3:6961795-6961814 Msa0626900:intron 50.0%
CCAACATTGCCAGCTTCAGC+AGG + chr4_3:6956203-6956222 None:intergenic 55.0%
CCTGCTGAAGCTGGCAATGT+TGG - chr4_3:6956200-6956219 Msa0626900:intron 55.0%
GGGCAATGCGACTGTCGTAA+TGG - chr4_3:6957325-6957344 Msa0626900:CDS 55.0%
GGGTCAGCAAAGAGTAGACG+AGG - chr4_3:6957793-6957812 Msa0626900:intron 55.0%
TGCTTTGCGCCTGACTGGAT+AGG - chr4_3:6958025-6958044 Msa0626900:intron 55.0%
GCGCCTGACTGGATAGGATT+TGG - chr4_3:6958031-6958050 Msa0626900:intron 55.0%
TTCAGTGACAAGCCACAGCC+AGG - chr4_3:6958055-6958074 Msa0626900:intron 55.0%
GACAAGCCACAGCCAGGATA+CGG - chr4_3:6958061-6958080 Msa0626900:intron 55.0%
CAGGTCACCGTCTCCATTCA+GGG - chr4_3:6960013-6960032 Msa0626900:intron 55.0%
CCACTGACCCTGAATGGAGA+CGG + chr4_3:6960023-6960042 None:intergenic 55.0%
AGGTCACCACTGACCCTGAA+TGG + chr4_3:6960029-6960048 None:intergenic 55.0%
AGGGTCAGTGGTGACCTAGT+TGG - chr4_3:6960032-6960051 Msa0626900:intron 55.0%
GTCAGTGGTGACCTAGTTGG+AGG - chr4_3:6960035-6960054 Msa0626900:intron 55.0%
ACGCATCCGCCTATGAAGCA+TGG - chr4_3:6960117-6960136 Msa0626900:CDS 55.0%
!!! ATGCGCCCCTTTTCTAGGGT+TGG - chr4_3:6960258-6960277 Msa0626900:intron 55.0%
!!! TGCGCCCCTTTTCTAGGGTT+GGG - chr4_3:6960259-6960278 Msa0626900:intron 55.0%
CACGCCCAACCCTAGAAAAG+GGG + chr4_3:6960266-6960285 None:intergenic 55.0%
CAGTTAAAAAGGGGTGGGGG+CGG - chr4_3:6960428-6960447 Msa0626900:intron 55.0%
GGCGGTTGCTTCCCTCATTA+TGG - chr4_3:6960446-6960465 Msa0626900:intron 55.0%
! GCCTTCGCCTTTTAGGCTTG+AGG + chr4_3:6960579-6960598 None:intergenic 55.0%
! ATTGCGTTGGCGCTCCGTGA+AGG + chr4_3:6957831-6957850 None:intergenic 60.0%
TCCACTGCTTTGCGCCTGAC+TGG - chr4_3:6958020-6958039 Msa0626900:intron 60.0%
TCCAGTCAGGCGCAAAGCAG+TGG + chr4_3:6958024-6958043 None:intergenic 60.0%
CCTGAATGGAGACGGTGACC+TGG + chr4_3:6960015-6960034 None:intergenic 60.0%
CCAGGTCACCGTCTCCATTC+AGG - chr4_3:6960012-6960031 Msa0626900:intron 60.0%
CCGTCTCCATTCAGGGTCAG+TGG - chr4_3:6960020-6960039 Msa0626900:intron 60.0%
GAAAGGGGCGAGGACCGGTT+TGG + chr4_3:6960400-6960419 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 6955862 6962314 6955862 ID=Msa0626900;Name=Msa0626900
chr4_3 mRNA 6955862 6962314 6955862 ID=Msa0626900-mRNA-1;Parent=Msa0626900;Name=Msa0626900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=86|1|1|1|1|1|11|280|383
chr4_3 exon 6955862 6956181 6955862 ID=Msa0626900-mRNA-1:exon:2002;Parent=Msa0626900-mRNA-1
chr4_3 exon 6956283 6956426 6956283 ID=Msa0626900-mRNA-1:exon:2001;Parent=Msa0626900-mRNA-1
chr4_3 exon 6957300 6957375 6957300 ID=Msa0626900-mRNA-1:exon:2000;Parent=Msa0626900-mRNA-1
chr4_3 exon 6958297 6958367 6958297 ID=Msa0626900-mRNA-1:exon:1999;Parent=Msa0626900-mRNA-1
chr4_3 exon 6958609 6958680 6958609 ID=Msa0626900-mRNA-1:exon:1998;Parent=Msa0626900-mRNA-1
chr4_3 exon 6959492 6959619 6959492 ID=Msa0626900-mRNA-1:exon:1997;Parent=Msa0626900-mRNA-1
chr4_3 exon 6959919 6959995 6959919 ID=Msa0626900-mRNA-1:exon:1996;Parent=Msa0626900-mRNA-1
chr4_3 exon 6960079 6960172 6960079 ID=Msa0626900-mRNA-1:exon:1995;Parent=Msa0626900-mRNA-1
chr4_3 exon 6960297 6960382 6960297 ID=Msa0626900-mRNA-1:exon:1994;Parent=Msa0626900-mRNA-1
chr4_3 exon 6960479 6960554 6960479 ID=Msa0626900-mRNA-1:exon:1993;Parent=Msa0626900-mRNA-1
chr4_3 exon 6961941 6962314 6961941 ID=Msa0626900-mRNA-1:exon:1992;Parent=Msa0626900-mRNA-1
chr4_3 five_prime_UTR 6962229 6962314 6962229 ID=Msa0626900-mRNA-1:five_prime_utr;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6961941 6962228 6961941 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6960479 6960554 6960479 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6960297 6960382 6960297 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6960079 6960172 6960079 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6959919 6959995 6959919 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6959492 6959619 6959492 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6958609 6958680 6958609 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6958297 6958367 6958297 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6957300 6957375 6957300 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6956283 6956426 6956283 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 CDS 6956142 6956181 6956142 ID=Msa0626900-mRNA-1:cds;Parent=Msa0626900-mRNA-1
chr4_3 three_prime_UTR 6955862 6956141 6955862 ID=Msa0626900-mRNA-1:three_prime_utr;Parent=Msa0626900-mRNA-1
Gene Sequence

>Msa0626900

ATGGTGTTTTCTACTATGTATTCTCCAACACTAAACCTTGCTATTTCTTCAACTACTACAAACAACTGTAACAGAAGAAGAGCATCAAGCACAAGTTCATGCAGAGGAGTGAATAGTATAAGAATCATAGCTAGTTCTACAGAGAAAAGTGAATCCAAAAGCAATGATCAAGATGATAAATCATCATTCAACCCTTTTGGATTTGTTACTGATAATCCATCAAGCCGTAGTGCCATTCAATTGTCTGAAAATCCTGCTGAAGCTGGCAATGTTGGACAAATGATAGATAAAATACAAGACAAGGGCAAGGAATACGGATCATATGTAAAATCCGGGAAGTTGAGATGGTTTGTGAGGGAAACTGGGTCAGCAAAGAGTAGACGAGGAACAATTGTATTCCTTCACGGAGCGCCAACGCAATCTTTTAGCTACCGAGTTGTTATGTCTGAGTTGGCAGATACAGGTTTCCACTGCTTTGCGCCTGACTGGATAGGATTTGGTTTCAGTGACAAGCCACAGCCAGGATACGGTTTTAATTACACAGAAAAGGAGTTCCACGATGCATTGGATAAACTGCTTCAGGTGTTGGGGGTCGAGTCTCCGTTTTACCTAGTTGTTCAGGGATTTCTTGTAGGTTCATATGGACTGACCTGGGCCTTGAAGAATTCAAGCAAGATATCAAAGCTAGCAATACTAAACAGTCCATTAACAAGCTCATCTCCCATTCCTGGACTATTTCAGCAGCTAAGGTTCCCTCTATATGGTGAATTTCAATGCCAGAATGCTATTATTGCTGAGCGGTTTATTGAAAGAGGTAGCCCTTATGTTCTGAAAAATGAAAAGGCTGATGTTTATCGGTTACCTTATTTGGCAAGCAGTGGACCTGGATTTGCTCTACTTGAAGCAGCAAGAAAAGCCAACTTCAACGGTACTTTCAGTGAAATAGCAGAAGGATTTGCATCTAACAGATGGGATAAGCCGATAATGCTTGCTTGGGGGCTATCAGACAAGTACTTGCCACAGTCTATAGCAGAGGAGTTTCAGAAAGGAAATCCTCAAAACATCAAGCTTAAATTGATAGAAGGAGCTGGTCATATGCCACAAGAAGATTGGCCTGAGAAAGTTATTGATGCTTTGAGAATGTTCTTTTGA

Protein sequence

>Msa0626900

MVFSTMYSPTLNLAISSTTTNNCNRRRASSTSSCRGVNSIRIIASSTEKSESKSNDQDDKSSFNPFGFVTDNPSSRSAIQLSENPAEAGNVGQMIDKIQDKGKEYGSYVKSGKLRWFVRETGSAKSRRGTIVFLHGAPTQSFSYRVVMSELADTGFHCFAPDWIGFGFSDKPQPGYGFNYTEKEFHDALDKLLQVLGVESPFYLVVQGFLVGSYGLTWALKNSSKISKLAILNSPLTSSSPIPGLFQQLRFPLYGEFQCQNAIIAERFIERGSPYVLKNEKADVYRLPYLASSGPGFALLEAARKANFNGTFSEIAEGFASNRWDKPIMLAWGLSDKYLPQSIAEEFQKGNPQNIKLKLIEGAGHMPQEDWPEKVIDALRMFF*