AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1252220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252220 MtrunA17_Chr8g0368491 94.783 345 7 1 1 334 1 345 0.0 666
Msa1252220 MtrunA17_Chr8g0368481 84.451 328 40 1 18 334 33 360 0.0 564
Msa1252220 MtrunA17_Chr5g0413351 60.241 332 115 3 16 334 1 328 2.31e-141 403
Msa1252220 MtrunA17_Chr3g0117481 47.472 356 161 4 1 334 1 352 2.10e-109 322
Msa1252220 MtrunA17_Chr4g0058951 47.009 351 158 6 1 329 1 345 1.73e-106 315
Msa1252220 MtrunA17_Chr7g0228251 47.319 317 158 4 18 331 7 317 3.86e-94 282
Msa1252220 MtrunA17_Chr1g0194161 38.462 325 169 6 27 327 5 322 1.22e-63 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252220 AT1G70505.4 52.663 338 143 5 3 326 14 348 3.87e-121 353
Msa1252220 AT1G70505.3 51.692 325 140 5 16 326 1 322 2.21e-113 332
Msa1252220 AT5G62960.1 47.385 325 163 4 11 329 20 342 5.35e-104 309
Msa1252220 AT1G10660.2 51.084 323 137 6 16 324 1 316 7.13e-103 305
Msa1252220 AT1G10660.1 51.084 323 137 6 16 324 1 316 7.13e-103 305
Msa1252220 AT1G10660.3 51.084 323 137 6 16 324 1 316 7.13e-103 305
Msa1252220 AT1G10660.4 51.084 323 137 6 16 324 1 316 7.13e-103 305
Msa1252220 AT5G62960.2 45.548 292 151 4 11 296 20 309 3.34e-88 267
Msa1252220 AT3G27770.1 42.581 310 159 5 21 319 10 311 5.87e-78 241
Msa1252220 AT1G70505.1 45.627 263 126 5 3 251 14 273 1.29e-70 224
Msa1252220 AT3G27770.2 45.418 251 123 4 80 319 21 268 9.27e-65 206
Msa1252220 AT1G70505.2 44.355 248 121 5 16 249 1 245 1.05e-63 202
Msa1252220 AT2G47115.1 40.824 267 139 3 63 329 50 297 8.01e-53 176

Find 88 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATACAATTTGCACATTA+AGG 0.192637 8_2:+49053506 Msa1252220:five_prime_UTR
AATGAATGAATAGAGAATTT+TGG 0.197437 8_2:+49053576 Msa1252220:five_prime_UTR
CTTTGGTCACTATTTACTTT+GGG 0.231865 8_2:+49054144 Msa1252220:CDS
ATACAACTGCATCAAGTTAT+TGG 0.234206 8_2:+49053728 Msa1252220:CDS
TCCATGCTTGTGTTTCAATT+TGG 0.238612 8_2:+49055533 Msa1252220:CDS
AAATTTAATCATTTGACTTT+TGG 0.239830 8_2:+49056572 Msa1252220:three_prime_UTR
GCATCATGTTTCTCACTATA+TGG 0.243670 8_2:+49054457 Msa1252220:CDS
CATTGTTTGTAGGCTTAAAT+AGG 0.262920 8_2:+49056474 Msa1252220:three_prime_UTR
CATCTTCATATGCACCATTA+TGG 0.268077 8_2:+49055798 Msa1252220:CDS
ACCTAAGGGTGTTTCCAATA+AGG 0.271834 8_2:+49052990 None:intergenic
CATCAAGTTATTGGTTGAAT+TGG 0.278055 8_2:+49053737 Msa1252220:CDS
AAGGAGGAAAACAGCATTAA+TGG 0.287714 8_2:-49055267 None:intergenic
TTTGGAGGAAGAACAGTTAA+TGG 0.294959 8_2:+49054502 Msa1252220:CDS
TTGTTTGAAGAAGAGAATTT+TGG 0.295136 8_2:-49053421 None:intergenic
AAATGGCATAAGATGCCTTT+TGG 0.302329 8_2:-49053038 None:intergenic
GTTGTATCTGTTGTCATTGT+TGG 0.320299 8_2:-49053712 None:intergenic
TTTGCACATTAAGGTAATCT+TGG 0.356455 8_2:+49053515 Msa1252220:five_prime_UTR
TTGAGGGAATTGACCCTTCA+TGG 0.357354 8_2:+49053923 Msa1252220:CDS
TGGTTATCTAGATCATTTCC+TGG 0.359457 8_2:+49056344 Msa1252220:CDS
GGAATTTAGAGAAAGATAAA+TGG 0.360873 8_2:-49053055 None:intergenic
AGATGCAGTAAGCACTTATA+TGG 0.362779 8_2:+49054534 Msa1252220:CDS
TCATTGTTGGTTGCCATGTA+TGG 0.370255 8_2:-49053699 None:intergenic
TCTTTCGTCCCTTCAAATAT+AGG 0.377086 8_2:+49056497 Msa1252220:three_prime_UTR
ATGGGAGTATTAGTAACTTC+AGG 0.377922 8_2:+49056799 Msa1252220:three_prime_UTR
ACTTTGGTCACTATTTACTT+TGG 0.380949 8_2:+49054143 Msa1252220:CDS
CTGGAAGGATTAGTAACTTC+AGG 0.381206 8_2:-49056537 None:intergenic
TCTTTCGTCCTTGCAAATAT+AGG 0.392270 8_2:-49056839 None:intergenic
AGATTTAGATCATTGTTTGT+AGG 0.404246 8_2:+49056464 Msa1252220:three_prime_UTR
TGGATGTTCTCACTGGATAA+AGG 0.409512 8_2:-49055083 None:intergenic
CTTATATTCCTTGCTTGAGA+TGG 0.412011 8_2:-49053335 None:intergenic
GACTTTCAGGTACTTGGCAG+TGG 0.430174 8_2:+49056262 Msa1252220:intron
CTGGTATGAAATTCCTGATC+AGG 0.431887 8_2:-49054604 None:intergenic
TTTCTCTAAATTCCTTGTGC+TGG 0.433554 8_2:+49053064 Msa1252220:five_prime_UTR
AAAATCAAGACTGTAATGAT+TGG 0.445159 8_2:-49055103 None:intergenic
TTCAAATGACCTATATTTGA+AGG 0.445646 8_2:-49056506 None:intergenic
GCTTGGAACACATGCGTTGA+GGG 0.454298 8_2:+49053907 Msa1252220:CDS
ATATGGCTCCTGCTCTTGAA+AGG 0.464042 8_2:+49054551 Msa1252220:CDS
TATTTAATATTCAAGTATGA+AGG 0.466694 8_2:+49053811 Msa1252220:CDS
TATGGCTCCTGCTCTTGAAA+GGG 0.468724 8_2:+49054552 Msa1252220:CDS
TATACAAACAAGGCTCAAAC+AGG 0.471300 8_2:-49056862 None:intergenic
ACTGACTAAAAGTCCTGATC+AGG 0.477095 8_2:+49054591 Msa1252220:CDS
TTTCATACCAGGGAAATTGC+TGG 0.477383 8_2:+49054616 Msa1252220:CDS
TTATATTCCTTGCTTGAGAT+GGG 0.483724 8_2:-49053334 None:intergenic
ATTCTTGAATCTTGATGCAA+TGG 0.488035 8_2:-49053631 None:intergenic
TGGGAGTATTAGTAACTTCA+GGG 0.497518 8_2:+49056800 Msa1252220:three_prime_UTR
TGACACATCATTGAATTGTA+TGG 0.503761 8_2:+49055292 Msa1252220:CDS
GAACAGATTGACCTTCACTT+TGG 0.506577 8_2:+49054127 Msa1252220:intron
TCTAAAACCCTTTCAAGAGC+AGG 0.507726 8_2:-49054559 None:intergenic
TGTACAATTCTTGATGATCC+AGG 0.509440 8_2:-49056362 None:intergenic
AAATTGAGAACATACCATAA+TGG 0.516836 8_2:-49055812 None:intergenic
CTGATCAGGAATTTCATACC+AGG 0.518748 8_2:+49054605 Msa1252220:CDS
TTCATTCATTTCTAACACAA+TGG 0.521261 8_2:-49053563 None:intergenic
TGTTATATGAAGATGAAGCT+TGG 0.524470 8_2:+49053890 Msa1252220:CDS
CATGGTCACCAAGCCATACA+TGG 0.525069 8_2:+49053686 Msa1252220:CDS
ACCTTATTGGAAACACCCTT+AGG 0.529665 8_2:-49052991 None:intergenic
AAGATGACAAGTCAAGGAAA+GGG 0.529829 8_2:-49055781 None:intergenic
AAATATCAATCACTGAATGA+AGG 0.531601 8_2:+49056402 Msa1252220:three_prime_UTR
TAATGATTGGATGTTCTCAC+TGG 0.531785 8_2:-49055090 None:intergenic
AGCTCCTTCAGTAGCAACAT+TGG 0.535313 8_2:-49053998 None:intergenic
GTTGGTTGCCATGTATGGCT+TGG 0.538489 8_2:-49053694 None:intergenic
AAAATAAATAAGCCGTAGCA+TGG 0.539023 8_2:-49056299 None:intergenic
TGGAAGGATTAGTAACTTCA+GGG 0.543768 8_2:-49056536 None:intergenic
GATCACCCCACAAATCCAAA+AGG 0.544088 8_2:+49053023 Msa1252220:five_prime_UTR
GAAGATGACAAGTCAAGGAA+AGG 0.548910 8_2:-49055782 None:intergenic
ATTAGCATAGACATTACTCA+TGG 0.556487 8_2:+49053654 Msa1252220:exon
AAATATGCAAATCTAAACAC+TGG 0.556712 8_2:-49055469 None:intergenic
GACAAGTCAAGGAAAGGGTA+AGG 0.557794 8_2:-49055776 None:intergenic
TCAAATGACCTATATTTGAA+GGG 0.558941 8_2:-49056505 None:intergenic
GTCTAAGCCCATCTCAAGCA+AGG 0.560088 8_2:+49053327 Msa1252220:five_prime_UTR
TACTCATGGGTTTCATAACA+TGG 0.562302 8_2:+49053668 Msa1252220:exon
TTTGGTCACTATTTACTTTG+GGG 0.562730 8_2:+49054145 Msa1252220:CDS
CTGCATTTGTGATTATTCAG+TGG 0.563990 8_2:+49055506 Msa1252220:CDS
TCAAATGACCTATATTTGCA+AGG 0.564598 8_2:+49056831 Msa1252220:three_prime_UTR
ACCAAATTGAAACACAAGCA+TGG 0.576064 8_2:-49055534 None:intergenic
TATAAACAAGTAACCATGAA+GGG 0.578500 8_2:-49053936 None:intergenic
ATTGCCAATGTTGCTACTGA+AGG 0.579934 8_2:+49053994 Msa1252220:CDS
CATATGAAGATGACAAGTCA+AGG 0.592413 8_2:-49055787 None:intergenic
AGCTTGGAACACATGCGTTG+AGG 0.594105 8_2:+49053906 Msa1252220:CDS
CTATAAACAAGTAACCATGA+AGG 0.602239 8_2:-49053937 None:intergenic
AATGTTGCTACTGAAGGAGC+TGG 0.612873 8_2:+49054000 Msa1252220:CDS
TTAGCATAGACATTACTCAT+GGG 0.620447 8_2:+49053655 Msa1252220:exon
ACATACACCAGCAATTTCCC+TGG 0.622121 8_2:-49054623 None:intergenic
GTAAATAGTGACCAAAGTGA+AGG 0.623574 8_2:-49054138 None:intergenic
AGAGTATAACTTCCAGCACA+AGG 0.637243 8_2:-49053076 None:intergenic
TGATCAGGAATTTCATACCA+GGG 0.670283 8_2:+49054606 Msa1252220:CDS
GAAAATCATCAAGAAGCACA+AGG 0.694038 8_2:+49053865 Msa1252220:CDS
TCAATGATGTGTCACCAAGG+AGG 0.697774 8_2:-49055283 None:intergenic
AATTCAATGATGTGTCACCA+AGG 0.698539 8_2:-49055286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATGTTAAATTATTG+AGG + chr8_2:49054242-49054261 Msa1252220:intron 10.0%
!! TAAAAATGTTAAATTATTGA+GGG + chr8_2:49054243-49054262 Msa1252220:intron 10.0%
!! AAATAGATTTATAGTTATAA+TGG - chr8_2:49055910-49055929 None:intergenic 10.0%
!! AATATTAATCATTTGAAAAA+TGG - chr8_2:49056767-49056786 None:intergenic 10.0%
!! TATTTAATATTCAAGTATGA+AGG + chr8_2:49053811-49053830 Msa1252220:CDS 15.0%
!! TTTAAACATAAAAAATTTGG+AGG + chr8_2:49054487-49054506 Msa1252220:CDS 15.0%
!! AAATTACCTGATAAATTATT+TGG - chr8_2:49054660-49054679 None:intergenic 15.0%
!!! AAATTTAATCATTTGACTTT+TGG + chr8_2:49056572-49056591 Msa1252220:three_prime_UTR 15.0%
!! AAGAAAAAAATAGGAAAGAA+AGG - chr8_2:49053251-49053270 None:intergenic 20.0%
!!! ACTCTTATACATACTTTTTT+TGG + chr8_2:49053471-49053490 Msa1252220:five_prime_UTR 20.0%
!!! AATGAATGAATAGAGAATTT+TGG + chr8_2:49053576-49053595 Msa1252220:five_prime_UTR 20.0%
!! TTAAGCATATTTGAATAGTT+TGG + chr8_2:49054058-49054077 Msa1252220:intron 20.0%
!! AGAAAAACAAAAATTAGTTG+CGG - chr8_2:49054356-49054375 None:intergenic 20.0%
!!! CATTTTCCAAATAATTTATC+AGG + chr8_2:49054651-49054670 Msa1252220:intron 20.0%
!!! TACAATTTTCTACAATATCA+AGG + chr8_2:49054830-49054849 Msa1252220:intron 20.0%
!! AACTAATGTAGAACTTAATT+TGG + chr8_2:49054910-49054929 Msa1252220:intron 20.0%
!! ATAATAATAAAGAGGATGTT+AGG - chr8_2:49055564-49055583 None:intergenic 20.0%
!!! CAATTTGTTTAAGTATTTGA+TGG + chr8_2:49056046-49056065 Msa1252220:intron 20.0%
!! AAAACCATTCACAATTTATA+TGG + chr8_2:49056160-49056179 Msa1252220:intron 20.0%
!!! TTTTCCATATAAATTGTGAA+TGG - chr8_2:49056167-49056186 None:intergenic 20.0%
!!! ATCTTCAAAATGATTTTGTT+AGG - chr8_2:49056443-49056462 None:intergenic 20.0%
!! CAAATGATTAATATTTGCAA+TGG + chr8_2:49056772-49056791 Msa1252220:intron 20.0%
!! GATCAAAATTTTCACCTTAT+TGG - chr8_2:49053007-49053026 None:intergenic 25.0%
! GGAATTTAGAGAAAGATAAA+TGG - chr8_2:49053058-49053077 None:intergenic 25.0%
! AAAAATAGGAAAGAAAGGTT+TGG - chr8_2:49053246-49053265 None:intergenic 25.0%
!!! TGAATAAGCTCAGTTTTTTA+TGG + chr8_2:49053380-49053399 Msa1252220:five_prime_UTR 25.0%
!!! GTTTTTTATGGCTCATTTTT+TGG + chr8_2:49053392-49053411 Msa1252220:five_prime_UTR 25.0%
!! TTGTTTGAAGAAGAGAATTT+TGG - chr8_2:49053424-49053443 None:intergenic 25.0%
!!! ATACTTTTTTTGGTTGCTAT+AGG + chr8_2:49053481-49053500 Msa1252220:five_prime_UTR 25.0%
! TTCATACAATTTGCACATTA+AGG + chr8_2:49053506-49053525 Msa1252220:five_prime_UTR 25.0%
! TTCATTCATTTCTAACACAA+TGG - chr8_2:49053566-49053585 None:intergenic 25.0%
! TATAAACAAGTAACCATGAA+GGG - chr8_2:49053939-49053958 None:intergenic 25.0%
! TTATTGAGGGAAATATAGAA+AGG + chr8_2:49054256-49054275 Msa1252220:intron 25.0%
! TATTGAGGGAAATATAGAAA+GGG + chr8_2:49054257-49054276 Msa1252220:intron 25.0%
! AATTGCTTCTTATCAAATTC+AGG + chr8_2:49054968-49054987 Msa1252220:intron 25.0%
!!! TTCTCACTGATTTTGTATTT+TGG + chr8_2:49055055-49055074 Msa1252220:CDS 25.0%
! AAAATCAAGACTGTAATGAT+TGG - chr8_2:49055106-49055125 None:intergenic 25.0%
! AAATATGCAAATCTAAACAC+TGG - chr8_2:49055472-49055491 None:intergenic 25.0%
!! GATTTGCATATTTTGTATTG+TGG + chr8_2:49055479-49055498 Msa1252220:CDS 25.0%
! AAATTGAGAACATACCATAA+TGG - chr8_2:49055815-49055834 None:intergenic 25.0%
!! CATTCAGTGATTGATATTTT+TGG - chr8_2:49056401-49056420 None:intergenic 25.0%
! AAATATCAATCACTGAATGA+AGG + chr8_2:49056402-49056421 Msa1252220:three_prime_UTR 25.0%
!! ATTTTGTTAGGCTATCTAAA+TGG - chr8_2:49056431-49056450 None:intergenic 25.0%
! AGATTTAGATCATTGTTTGT+AGG + chr8_2:49056464-49056483 Msa1252220:three_prime_UTR 25.0%
! TCAAATGACCTATATTTGAA+GGG - chr8_2:49056508-49056527 None:intergenic 25.0%
! TTCAAATGACCTATATTTGA+AGG - chr8_2:49056509-49056528 None:intergenic 25.0%
!! CAAATGATTAAATTTTGCAG+TGG - chr8_2:49056567-49056586 None:intergenic 25.0%
! TCAAATGACTTATATTTGCA+GGG - chr8_2:49056705-49056724 None:intergenic 25.0%
! TTCAAATGACTTATATTTGC+AGG - chr8_2:49056706-49056725 None:intergenic 25.0%
! TAATATTTGCAATGGCAAAA+TGG + chr8_2:49056780-49056799 Msa1252220:intron 25.0%
! AATATTTGCAATGGCAAAAT+GGG + chr8_2:49056781-49056800 Msa1252220:intron 25.0%
! TGCTTTGCTTCATCATTTTA+TGG - chr8_2:49053186-49053205 None:intergenic 30.0%
TTATATTCCTTGCTTGAGAT+GGG - chr8_2:49053337-49053356 None:intergenic 30.0%
TTTGCACATTAAGGTAATCT+TGG + chr8_2:49053515-49053534 Msa1252220:five_prime_UTR 30.0%
CACAATGGAAAAAAGAATGA+TGG - chr8_2:49053551-49053570 None:intergenic 30.0%
ATTCTTGAATCTTGATGCAA+TGG - chr8_2:49053634-49053653 None:intergenic 30.0%
ATTAGCATAGACATTACTCA+TGG + chr8_2:49053654-49053673 Msa1252220:exon 30.0%
TTAGCATAGACATTACTCAT+GGG + chr8_2:49053655-49053674 Msa1252220:exon 30.0%
ATACAACTGCATCAAGTTAT+TGG + chr8_2:49053728-49053747 Msa1252220:CDS 30.0%
! CATCAAGTTATTGGTTGAAT+TGG + chr8_2:49053737-49053756 Msa1252220:CDS 30.0%
TGTTATATGAAGATGAAGCT+TGG + chr8_2:49053890-49053909 Msa1252220:CDS 30.0%
CTATAAACAAGTAACCATGA+AGG - chr8_2:49053940-49053959 None:intergenic 30.0%
!!! CATTTCTTTTGTTGTTCTCT+TGG + chr8_2:49053963-49053982 Msa1252220:CDS 30.0%
ACTTTGGTCACTATTTACTT+TGG + chr8_2:49054143-49054162 Msa1252220:CDS 30.0%
CTTTGGTCACTATTTACTTT+GGG + chr8_2:49054144-49054163 Msa1252220:CDS 30.0%
TTTGGTCACTATTTACTTTG+GGG + chr8_2:49054145-49054164 Msa1252220:CDS 30.0%
!! GGTTTTCGATGTTTCTAAAA+TGG + chr8_2:49054767-49054786 Msa1252220:intron 30.0%
TCAAATAGAAGTCGTCTTAA+TGG - chr8_2:49054874-49054893 None:intergenic 30.0%
! TCTATTTGAAACCTCTGATT+AGG + chr8_2:49054885-49054904 Msa1252220:intron 30.0%
! TTTTCATTATAGACTTGTGC+AGG + chr8_2:49055024-49055043 Msa1252220:intron 30.0%
! AGTATCATCAACATTTTCAC+TGG + chr8_2:49055129-49055148 Msa1252220:intron 30.0%
TGACACATCATTGAATTGTA+TGG + chr8_2:49055292-49055311 Msa1252220:CDS 30.0%
! TAAGTATTTGATGGTATTGC+CGG + chr8_2:49056055-49056074 Msa1252220:intron 30.0%
! ATACATACCTCTTGACATTT+TGG + chr8_2:49056240-49056259 Msa1252220:intron 30.0%
AAAATAAATAAGCCGTAGCA+TGG - chr8_2:49056302-49056321 None:intergenic 30.0%
!! TAGTGAAGTTGAAGCATTTT+TGG + chr8_2:49056324-49056343 Msa1252220:CDS 30.0%
CATTGTTTGTAGGCTTAAAT+AGG + chr8_2:49056474-49056493 Msa1252220:three_prime_UTR 30.0%
!! TTTGACTTTTGGTCCTAATT+AGG + chr8_2:49056583-49056602 Msa1252220:three_prime_UTR 30.0%
CTCAGCAAAAAAACCTAATT+AGG - chr8_2:49056599-49056618 None:intergenic 30.0%
!!! CTAATTAGGTTTTTTTGCTG+AGG + chr8_2:49056597-49056616 Msa1252220:intron 30.0%
TCAAATGACCTATATTTGCA+AGG + chr8_2:49056831-49056850 Msa1252220:three_prime_UTR 30.0%
! AAGATGCCTTTTGGATTTGT+GGG - chr8_2:49053032-49053051 None:intergenic 35.0%
! TAAGATGCCTTTTGGATTTG+TGG - chr8_2:49053033-49053052 None:intergenic 35.0%
! AAATGGCATAAGATGCCTTT+TGG - chr8_2:49053041-49053060 None:intergenic 35.0%
TTTCTCTAAATTCCTTGTGC+TGG + chr8_2:49053064-49053083 Msa1252220:five_prime_UTR 35.0%
CTTATATTCCTTGCTTGAGA+TGG - chr8_2:49053338-49053357 None:intergenic 35.0%
TACTCATGGGTTTCATAACA+TGG + chr8_2:49053668-49053687 Msa1252220:exon 35.0%
GTTGTATCTGTTGTCATTGT+TGG - chr8_2:49053715-49053734 None:intergenic 35.0%
! GATTCTTCTTTTGTGCACTA+TGG + chr8_2:49053761-49053780 Msa1252220:CDS 35.0%
! GAAAATCATCAAGAAGCACA+AGG + chr8_2:49053865-49053884 Msa1252220:CDS 35.0%
GTAAATAGTGACCAAAGTGA+AGG - chr8_2:49054141-49054160 None:intergenic 35.0%
!! TCACTATTTACTTTGGGGTA+AGG + chr8_2:49054150-49054169 Msa1252220:intron 35.0%
GCATCATGTTTCTCACTATA+TGG + chr8_2:49054457-49054476 Msa1252220:CDS 35.0%
TTTGGAGGAAGAACAGTTAA+TGG + chr8_2:49054502-49054521 Msa1252220:CDS 35.0%
AGATGCAGTAAGCACTTATA+TGG + chr8_2:49054534-49054553 Msa1252220:CDS 35.0%
TGATCAGGAATTTCATACCA+GGG + chr8_2:49054606-49054625 Msa1252220:CDS 35.0%
TATGTGATCGTGATCTGTAA+CGG + chr8_2:49054746-49054765 Msa1252220:intron 35.0%
CAATATCAAGGATTGTGACA+TGG + chr8_2:49054842-49054861 Msa1252220:intron 35.0%
ACATTAGTTGACCTAATCAG+AGG - chr8_2:49054899-49054918 None:intergenic 35.0%
TGCTTCTTATCAAATTCAGG+AGG + chr8_2:49054971-49054990 Msa1252220:intron 35.0%
TAATGATTGGATGTTCTCAC+TGG - chr8_2:49055093-49055112 None:intergenic 35.0%
AAGGAGGAAAACAGCATTAA+TGG - chr8_2:49055270-49055289 None:intergenic 35.0%
!!! ATTAATGCTGTTTTCCTCCT+TGG + chr8_2:49055269-49055288 Msa1252220:CDS 35.0%
AATTCAATGATGTGTCACCA+AGG - chr8_2:49055289-49055308 None:intergenic 35.0%
CTGCATTTGTGATTATTCAG+TGG + chr8_2:49055506-49055525 Msa1252220:CDS 35.0%
TCCATGCTTGTGTTTCAATT+TGG + chr8_2:49055533-49055552 Msa1252220:CDS 35.0%
ACCAAATTGAAACACAAGCA+TGG - chr8_2:49055537-49055556 None:intergenic 35.0%
TGATAACCTTCATTTGTCAC+AGG + chr8_2:49055750-49055769 Msa1252220:intron 35.0%
AAGATGACAAGTCAAGGAAA+GGG - chr8_2:49055784-49055803 None:intergenic 35.0%
CATATGAAGATGACAAGTCA+AGG - chr8_2:49055790-49055809 None:intergenic 35.0%
CATCTTCATATGCACCATTA+TGG + chr8_2:49055798-49055817 Msa1252220:CDS 35.0%
TCATTGAACAGAGTTTGATG+AGG + chr8_2:49055868-49055887 Msa1252220:intron 35.0%
GTAACAACATATGCTCACAT+AGG - chr8_2:49055961-49055980 None:intergenic 35.0%
CATATGTTGTTACCTTACTC+AGG + chr8_2:49055968-49055987 Msa1252220:intron 35.0%
AGTGCTCAACCTAACAATAT+TGG + chr8_2:49055995-49056014 Msa1252220:intron 35.0%
CCTAACAATATTGGTATTGC+CGG + chr8_2:49056004-49056023 Msa1252220:intron 35.0%
TGAAAGTCCAAAATGTCAAG+AGG - chr8_2:49056250-49056269 None:intergenic 35.0%
! TCTTGACATTTTGGACTTTC+AGG + chr8_2:49056249-49056268 Msa1252220:intron 35.0%
!! ATTTTGGACTTTCAGGTACT+TGG + chr8_2:49056256-49056275 Msa1252220:intron 35.0%
TGGTTATCTAGATCATTTCC+TGG + chr8_2:49056344-49056363 Msa1252220:CDS 35.0%
! TGTACAATTCTTGATGATCC+AGG - chr8_2:49056365-49056384 None:intergenic 35.0%
TCTTTCGTCCCTTCAAATAT+AGG + chr8_2:49056497-49056516 Msa1252220:three_prime_UTR 35.0%
! TGGAAGGATTAGTAACTTCA+GGG - chr8_2:49056539-49056558 None:intergenic 35.0%
!!! ATTAGGTTTTTTTGCTGAGG+TGG + chr8_2:49056600-49056619 Msa1252220:intron 35.0%
!!! TTAGGTTTTTTTGCTGAGGT+GGG + chr8_2:49056601-49056620 Msa1252220:intron 35.0%
!! ATGGGAGTATTAGTAACTTC+AGG + chr8_2:49056799-49056818 Msa1252220:three_prime_UTR 35.0%
!! TGGGAGTATTAGTAACTTCA+GGG + chr8_2:49056800-49056819 Msa1252220:three_prime_UTR 35.0%
TCTTTCGTCCTTGCAAATAT+AGG - chr8_2:49056842-49056861 None:intergenic 35.0%
! AGATGCCTTTTGGATTTGTG+GGG - chr8_2:49053031-49053050 None:intergenic 40.0%
AGAGTATAACTTCCAGCACA+AGG - chr8_2:49053079-49053098 None:intergenic 40.0%
! TCATTGTTGGTTGCCATGTA+TGG - chr8_2:49053702-49053721 None:intergenic 40.0%
ATTGCCAATGTTGCTACTGA+AGG + chr8_2:49053994-49054013 Msa1252220:CDS 40.0%
GAACAGATTGACCTTCACTT+TGG + chr8_2:49054127-49054146 Msa1252220:intron 40.0%
CGTGTCGCAAAATTTAGTGA+CGG - chr8_2:49054307-49054326 None:intergenic 40.0%
! CGTCACTAAATTTTGCGACA+CGG + chr8_2:49054305-49054324 Msa1252220:intron 40.0%
! TCTAAAACCCTTTCAAGAGC+AGG - chr8_2:49054562-49054581 None:intergenic 40.0%
! TCAGGACTTTTAGTCAGTTC+AGG - chr8_2:49054589-49054608 None:intergenic 40.0%
ACTGACTAAAAGTCCTGATC+AGG + chr8_2:49054591-49054610 Msa1252220:CDS 40.0%
CTGGTATGAAATTCCTGATC+AGG - chr8_2:49054607-49054626 None:intergenic 40.0%
CTGATCAGGAATTTCATACC+AGG + chr8_2:49054605-49054624 Msa1252220:CDS 40.0%
TTTCATACCAGGGAAATTGC+TGG + chr8_2:49054616-49054635 Msa1252220:CDS 40.0%
TGGATGTTCTCACTGGATAA+AGG - chr8_2:49055086-49055105 None:intergenic 40.0%
CTGGAAATCTCTGCATGTTT+AGG - chr8_2:49055453-49055472 None:intergenic 40.0%
TAACCTTCATTTGTCACAGG+TGG + chr8_2:49055753-49055772 Msa1252220:intron 40.0%
GAAGATGACAAGTCAAGGAA+AGG - chr8_2:49055785-49055804 None:intergenic 40.0%
CCGGCAATACCAATATTGTT+AGG - chr8_2:49056007-49056026 None:intergenic 40.0%
! CTCATGCATTTTCCATGCTA+CGG + chr8_2:49056287-49056306 Msa1252220:CDS 40.0%
! CTGGAAGGATTAGTAACTTC+AGG - chr8_2:49056540-49056559 None:intergenic 40.0%
! TAAATTTTGCAGTGGCAGAC+TGG - chr8_2:49056559-49056578 None:intergenic 40.0%
GATCACCCCACAAATCCAAA+AGG + chr8_2:49053023-49053042 Msa1252220:five_prime_UTR 45.0%
TTGAGGGAATTGACCCTTCA+TGG + chr8_2:49053923-49053942 Msa1252220:CDS 45.0%
AGCTCCTTCAGTAGCAACAT+TGG - chr8_2:49054001-49054020 None:intergenic 45.0%
AATGTTGCTACTGAAGGAGC+TGG + chr8_2:49054000-49054019 Msa1252220:CDS 45.0%
TTGCGACACGGAAATTAGAG+AGG + chr8_2:49054317-49054336 Msa1252220:intron 45.0%
ATATGGCTCCTGCTCTTGAA+AGG + chr8_2:49054551-49054570 Msa1252220:CDS 45.0%
TATGGCTCCTGCTCTTGAAA+GGG + chr8_2:49054552-49054571 Msa1252220:CDS 45.0%
ACATACACCAGCAATTTCCC+TGG - chr8_2:49054626-49054645 None:intergenic 45.0%
AGGGAAATTGCTGGTGTATG+TGG + chr8_2:49054625-49054644 Msa1252220:intron 45.0%
TGGCAATGTGACCGAAATTG+AGG + chr8_2:49054787-49054806 Msa1252220:intron 45.0%
GACCGAAATTGAGGTTGCAT+CGG + chr8_2:49054796-49054815 Msa1252220:intron 45.0%
GACCGATGCAACCTCAATTT+CGG - chr8_2:49054801-49054820 None:intergenic 45.0%
TCAATGATGTGTCACCAAGG+AGG - chr8_2:49055286-49055305 None:intergenic 45.0%
GACAAGTCAAGGAAAGGGTA+AGG - chr8_2:49055779-49055798 None:intergenic 45.0%
TGAGCACTTTCACCTGAGTA+AGG - chr8_2:49055983-49056002 None:intergenic 45.0%
!! GGTGGTTGGTTGGCTTAAAT+AGG + chr8_2:49056671-49056690 Msa1252220:intron 45.0%
!! AATTTAAATAAGAAAAAAAT+AGG - chr8_2:49053260-49053279 None:intergenic 5.0%
!! TTATTTAAACATAAAAAATT+TGG + chr8_2:49054484-49054503 Msa1252220:CDS 5.0%
!! TAATAATAATAATAATAAAG+AGG - chr8_2:49055572-49055591 None:intergenic 5.0%
GTCTAAGCCCATCTCAAGCA+AGG + chr8_2:49053327-49053346 Msa1252220:five_prime_UTR 50.0%
CATGGTCACCAAGCCATACA+TGG + chr8_2:49053686-49053705 Msa1252220:CDS 50.0%
GTTGGTTGCCATGTATGGCT+TGG - chr8_2:49053697-49053716 None:intergenic 50.0%
AGCTTGGAACACATGCGTTG+AGG + chr8_2:49053906-49053925 Msa1252220:CDS 50.0%
GCTTGGAACACATGCGTTGA+GGG + chr8_2:49053907-49053926 Msa1252220:CDS 50.0%
! GAGGTTGCATCGGTCACATT+TGG + chr8_2:49054806-49054825 Msa1252220:intron 50.0%
AGGCCACCTGTGACAAATGA+AGG - chr8_2:49055759-49055778 None:intergenic 50.0%
! TTGGTATTGCCGGTTGAGCT+AGG + chr8_2:49056014-49056033 Msa1252220:intron 50.0%
TCCGTAAGACCTAGCTCAAC+CGG - chr8_2:49056026-49056045 None:intergenic 50.0%
! ATGGTATTGCCGGTTGAGCT+AGG + chr8_2:49056065-49056084 Msa1252220:intron 50.0%
TCCGTAAGACCTAGCTCAAC+CGG - chr8_2:49056026-49056045 None:intergenic 50.0%
! GACTTTCAGGTACTTGGCAG+TGG + chr8_2:49056262-49056281 Msa1252220:intron 50.0%
! TTTTGCAGTGGCAGACTGGA+AGG - chr8_2:49056555-49056574 None:intergenic 50.0%
CCAGTCATCACTTGCCACAT+GGG - chr8_2:49056647-49056666 None:intergenic 50.0%
CCATGTGGCAAGTGATGACT+GGG + chr8_2:49056645-49056664 Msa1252220:intron 50.0%
GCCGGTTGAGCTAGGTCTTA+CGG + chr8_2:49056022-49056041 Msa1252220:intron 55.0%
GCCGGTTGAGCTAGGTCTTA+CGG + chr8_2:49056022-49056041 Msa1252220:intron 55.0%
CCCATGTGGCAAGTGATGAC+TGG + chr8_2:49056644-49056663 Msa1252220:intron 55.0%
CCCAGTCATCACTTGCCACA+TGG - chr8_2:49056648-49056667 None:intergenic 55.0%
! GTGGGCTGTCATTAGCGACG+TGG + chr8_2:49056619-49056638 Msa1252220:intron 60.0%
TTAGCGACGTGGTGCCCATG+TGG + chr8_2:49056630-49056649 Msa1252220:intron 60.0%
TGGCAAGTGATGACTGGGCG+AGG + chr8_2:49056650-49056669 Msa1252220:intron 60.0%
CAAGTGATGACTGGGCGAGG+TGG + chr8_2:49056653-49056672 Msa1252220:intron 60.0%
TGATGACTGGGCGAGGTGGT+TGG + chr8_2:49056657-49056676 Msa1252220:intron 60.0%
GACTGGGCGAGGTGGTTGGT+TGG + chr8_2:49056661-49056680 Msa1252220:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 49052992 49056873 49052992 ID=Msa1252220;Name=Msa1252220
chr8_2 mRNA 49052992 49056873 49052992 ID=Msa1252220-mRNA-1;Parent=Msa1252220;Name=Msa1252220-mRNA-1;_AED=0.30;_eAED=0.30;_QI=653|0.88|0.9|1|0.77|0.6|10|291|334
chr8_2 exon 49052992 49053154 49052992 ID=Msa1252220-mRNA-1:exon:14814;Parent=Msa1252220-mRNA-1
chr8_2 exon 49053183 49054043 49053183 ID=Msa1252220-mRNA-1:exon:14815;Parent=Msa1252220-mRNA-1
chr8_2 exon 49054133 49054166 49054133 ID=Msa1252220-mRNA-1:exon:14816;Parent=Msa1252220-mRNA-1
chr8_2 exon 49054454 49054639 49054454 ID=Msa1252220-mRNA-1:exon:14817;Parent=Msa1252220-mRNA-1
chr8_2 exon 49055036 49055125 49055036 ID=Msa1252220-mRNA-1:exon:14818;Parent=Msa1252220-mRNA-1
chr8_2 exon 49055248 49055313 49055248 ID=Msa1252220-mRNA-1:exon:14819;Parent=Msa1252220-mRNA-1
chr8_2 exon 49055463 49055554 49055463 ID=Msa1252220-mRNA-1:exon:14820;Parent=Msa1252220-mRNA-1
chr8_2 exon 49055772 49055819 49055772 ID=Msa1252220-mRNA-1:exon:14821;Parent=Msa1252220-mRNA-1
chr8_2 exon 49056271 49056604 49056271 ID=Msa1252220-mRNA-1:exon:14822;Parent=Msa1252220-mRNA-1
chr8_2 exon 49056799 49056873 49056799 ID=Msa1252220-mRNA-1:exon:14823;Parent=Msa1252220-mRNA-1
chr8_2 five_prime_UTR 49052992 49053154 49052992 ID=Msa1252220-mRNA-1:five_prime_utr;Parent=Msa1252220-mRNA-1
chr8_2 five_prime_UTR 49053183 49053672 49053183 ID=Msa1252220-mRNA-1:five_prime_utr;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49053673 49054043 49053673 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49054133 49054166 49054133 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49054454 49054639 49054454 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49055036 49055125 49055036 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49055248 49055313 49055248 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49055463 49055554 49055463 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49055772 49055819 49055772 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 CDS 49056271 49056388 49056271 ID=Msa1252220-mRNA-1:cds;Parent=Msa1252220-mRNA-1
chr8_2 three_prime_UTR 49056389 49056604 49056389 ID=Msa1252220-mRNA-1:three_prime_utr;Parent=Msa1252220-mRNA-1
chr8_2 three_prime_UTR 49056799 49056873 49056799 ID=Msa1252220-mRNA-1:three_prime_utr;Parent=Msa1252220-mRNA-1
Gene Sequence

>Msa1252220

ATGGGTTTCATAACATGGTCACCAAGCCATACATGGCAACCAACAATGACAACAGATACAACTGCATCAAGTTATTGGTTGAATTGGAGATTCTTCTTTTGTGCACTATGGATTTTCATTTCAATGACATTAGCATCTTATTTAATATTCAAGTATGAAGGATTCAACAAACAAAGATCTTCTGAGAGAGATGAAAATCATCAAGAAGCACAAGGATTGTTATATGAAGATGAAGCTTGGAACACATGCGTTGAGGGAATTGACCCTTCATGGTTACTTGTTTATAGAATCATTTCTTTTGTTGTTCTCTTGGCTTTGATCATTGCCAATGTTGCTACTGAAGGAGCTGGCATATTATACTACTACACTCAATTGACCTTCACTTTGGTCACTATTTACTTTGGGCTTGCATCATGTTTCTCACTATATGGATGTTTATTTAAACATAAAAAATTTGGAGGAAGAACAGTTAATGGTGCGTCATTAGATGCAGTAAGCACTTATATGGCTCCTGCTCTTGAAAGGGTTTTAGATATTCCTGAACTGACTAAAAGTCCTGATCAGGAATTTCATACCAGGGAAATTGCTGGTACTTGTGCAGGTGCTGTGTTTCTCACTGATTTTGTATTTTGGTTTGTCCTTTATCCAGTGAGAACATCCAATCATTACAGTCTTGATTTTTTGATTTTTTGTATGCACACCATTAATGCTGTTTTCCTCCTTGGTGACACATCATTGAATTGTATGAGATTTCCAGTGTTTAGATTTGCATATTTTGTATTGTGGACAGCTGCATTTGTGATTATTCAGTGGATAATCCATGCTTGTGTTTCAATTTGGTGGCCTTACCCTTTCCTTGACTTGTCATCTTCATATGCACCATTATGGTACTTGGCAGTGGCTCTCATGCATTTTCCATGCTACGGCTTATTTATTTTGATAGTGAAGTTGAAGCATTTTTGGTTATCTAGATCATTTCCTGGATCATCAAGAATTGTACATTGA

Protein sequence

>Msa1252220

MGFITWSPSHTWQPTMTTDTTASSYWLNWRFFFCALWIFISMTLASYLIFKYEGFNKQRSSERDENHQEAQGLLYEDEAWNTCVEGIDPSWLLVYRIISFVVLLALIIANVATEGAGILYYYTQLTFTLVTIYFGLASCFSLYGCLFKHKKFGGRTVNGASLDAVSTYMAPALERVLDIPELTKSPDQEFHTREIAGTCAGAVFLTDFVFWFVLYPVRTSNHYSLDFLIFCMHTINAVFLLGDTSLNCMRFPVFRFAYFVLWTAAFVIIQWIIHACVSIWWPYPFLDLSSSYAPLWYLAVALMHFPCYGLFILIVKLKHFWLSRSFPGSSRIVH*