AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112230 MtrunA17_Chr7g0247871 90.959 542 26 2 1 527 1 534 0.0 974
Msa1112230 MtrunA17_Chr8g0348761 72.194 597 87 10 1 527 1 588 0.0 810
Msa1112230 MtrunA17_Chr3g0104361 74.091 440 91 2 103 527 85 516 0.0 674
Msa1112230 MtrunA17_Chr7g0241591 39.303 402 233 3 128 526 113 506 4.82e-100 311
Msa1112230 MtrunA17_Chr4g0064801 38.252 515 268 12 44 523 25 524 1.70e-98 308
Msa1112230 MtrunA17_Chr5g0429461 38.519 405 234 3 128 525 194 590 8.12e-88 282
Msa1112230 MtrunA17_Chr2g0290941 94.286 140 0 1 351 490 1 132 3.66e-86 263
Msa1112230 MtrunA17_Chr4g0013731 35.619 452 238 8 119 527 2 443 6.35e-77 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112230 AT4G00370.1 73.084 561 97 8 1 527 1 541 0.0 774
Msa1112230 AT2G29650.1 71.715 449 103 3 95 527 72 512 0.0 657
Msa1112230 AT2G29650.3 77.250 400 83 1 128 527 9 400 0.0 640
Msa1112230 AT2G29650.4 77.136 398 83 1 130 527 1 390 0.0 636
Msa1112230 AT2G29650.2 69.725 327 83 2 95 405 72 398 7.36e-161 463
Msa1112230 AT2G38060.1 35.992 514 292 10 39 526 10 512 4.27e-102 317
Msa1112230 AT3G46980.1 40.148 406 227 4 128 525 130 527 6.14e-94 296
Msa1112230 AT3G46980.3 40.148 406 227 4 128 525 130 527 6.66e-94 296
Msa1112230 AT3G46980.4 40.148 406 227 4 128 525 178 575 1.53e-93 296
Msa1112230 AT5G20380.1 39.302 430 228 9 116 523 90 508 3.07e-91 289
Msa1112230 AT5G20380.2 39.302 430 228 9 116 523 142 560 1.48e-90 288
Msa1112230 AT2G38060.2 41.667 336 192 2 128 459 117 452 3.34e-87 280
Msa1112230 AT3G46980.8 38.592 355 202 4 179 525 1 347 9.63e-76 243
Msa1112230 AT3G46980.2 38.592 355 202 4 179 525 1 347 9.63e-76 243
Msa1112230 AT3G46980.5 38.592 355 202 4 179 525 1 347 1.13e-75 243
Msa1112230 AT3G46980.7 38.592 355 202 4 179 525 1 347 1.13e-75 243
Msa1112230 AT5G44370.1 34.940 415 245 6 128 527 28 432 4.25e-74 241
Msa1112230 AT3G46980.6 36.552 290 168 4 244 525 2 283 4.94e-53 182

Find 166 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATTATGCGTGCCTTTA+TGG 0.088357 7_3:+58195454 Msa1112230:CDS
CCTCGAAGAGTGGGAATTTC+TGG 0.118458 7_3:+58194456 Msa1112230:CDS
TGCTCACGAGTTTCAATTTC+AGG 0.182035 7_3:+58197293 Msa1112230:CDS
CTTAGATTCTTGGTGGTATA+TGG 0.187897 7_3:+58195327 Msa1112230:intron
TTCTTGGAATGACGTGTTTA+AGG 0.216470 7_3:+58197492 Msa1112230:CDS
GGTGTGCTTGCTGGCGTCTT+TGG 0.227575 7_3:+58197345 Msa1112230:CDS
ATACGTCTCTTTGTTCAATA+TGG 0.232075 7_3:-58194530 None:intergenic
AAGTTCAACCTCACTGAATC+TGG 0.253604 7_3:+58196574 Msa1112230:CDS
CTTATTATGCGTGCCTTTAT+GGG 0.279316 7_3:+58195455 Msa1112230:CDS
CAATGTCACAAGAGTTTAAC+TGG 0.281775 7_3:+58195137 Msa1112230:CDS
ACACCTATTGCTGCAAGAAT+TGG 0.294493 7_3:+58195419 Msa1112230:CDS
TTGGATCCCTTGGAAGTATC+TGG 0.298930 7_3:+58196087 Msa1112230:CDS
CTGATGGCCACCCAAGGTTT+TGG 0.299035 7_3:-58196052 None:intergenic
CAGAAAAGGTATTTGCAAAA+AGG 0.300898 7_3:-58197862 None:intergenic
ATGGCCGTGTTTGCAAATAT+TGG 0.302731 7_3:+58196625 Msa1112230:CDS
TTCTATCAAAAGCACCAGTT+TGG 0.314560 7_3:+58196381 Msa1112230:CDS
GAAGTATCTGGTTTGCCTTT+TGG 0.317092 7_3:+58196099 Msa1112230:CDS
ACCACTTCTTTCATTGCTTC+AGG 0.320914 7_3:+58193767 Msa1112230:CDS
TCTCTCATTTCTGCCACAAT+TGG 0.328674 7_3:+58196414 Msa1112230:CDS
GTCCAAGTGGATTCCAGTTT+CGG 0.337421 7_3:+58195947 Msa1112230:CDS
TACCTTTCGAACAGTTGTTA+TGG 0.353371 7_3:-58196686 None:intergenic
CCAAAGGGTTATTTGCAATC+TGG 0.353937 7_3:-58194494 None:intergenic
TCAATTTCAGGGCGTATTGC+TGG 0.355168 7_3:+58197305 Msa1112230:CDS
CATTTCAAATCAGTATTAGA+TGG 0.356536 7_3:+58197794 Msa1112230:three_prime_UTR
ATGCAATCAATCGGGTTTCT+AGG 0.357772 7_3:+58196864 Msa1112230:CDS
TCTGTTGCATTATACATAAT+AGG 0.358132 7_3:+58197517 Msa1112230:CDS
GATCTGCTTCTCTCCGAAAC+TGG 0.362948 7_3:-58195960 None:intergenic
CTCTCATTTCTGCCACAATT+GGG 0.368700 7_3:+58196415 Msa1112230:CDS
CTTGGACAGTATATTATTCA+TGG 0.377433 7_3:-58195931 None:intergenic
CAAAGAGACGTATATGGATT+AGG 0.381279 7_3:+58194540 Msa1112230:CDS
GGGAAGGTCGTGCTAGGATT+TGG 0.384068 7_3:+58195365 Msa1112230:CDS
ATTGAACAAAGAGACGTATA+TGG 0.384389 7_3:+58194534 Msa1112230:CDS
AACAGGTGAAGCAATTCTAT+TGG 0.386971 7_3:+58194665 Msa1112230:CDS
GGCTCTTATGTGTTCTTCCA+TGG 0.389923 7_3:+58196596 Msa1112230:CDS
AATACAGCAGGTGTGCTTGC+TGG 0.392626 7_3:+58197336 Msa1112230:CDS
AACCTCACCGATTCCCATAA+AGG 0.393601 7_3:-58195468 None:intergenic
CACCTGTCTCGGACATTCCT+TGG 0.398904 7_3:+58196351 Msa1112230:CDS
TCTATCAAAAGCACCAGTTT+GGG 0.404421 7_3:+58196382 Msa1112230:CDS
CAAAGGATGACCCGGATCTC+GGG 0.407606 7_3:+58196285 Msa1112230:CDS
GGCAGCAGCTTCCTAAGCGC+TGG 0.415372 7_3:+58194718 Msa1112230:CDS
ATACATCCCTTGCTATATAT+AGG 0.416319 7_3:-58197618 None:intergenic
GATGCCTACTTACTATAATC+AGG 0.418993 7_3:+58196460 Msa1112230:CDS
CCGAGATCCGGGTCATCCTT+TGG 0.422361 7_3:-58196284 None:intergenic
GTCTTTGGCACAGCTGCAAC+TGG 0.422764 7_3:+58197360 Msa1112230:CDS
TTAGATTCTTGGTGGTATAT+GGG 0.425597 7_3:+58195328 Msa1112230:intron
CACCTATTGCTGCAAGAATT+GGG 0.432187 7_3:+58195420 Msa1112230:CDS
CCTTGGTTCTGTGGTAGGCT+TGG 0.435784 7_3:+58196010 Msa1112230:CDS
ATGTACCTTGGTTCTGTGGT+AGG 0.445187 7_3:+58196005 Msa1112230:CDS
CCAGAAATTCCCACTCTTCG+AGG 0.445692 7_3:-58194456 None:intergenic
TGGCAGATCATGCAATCAAT+CGG 0.452349 7_3:+58196855 Msa1112230:intron
CAATTTCAGGGCGTATTGCT+GGG 0.455105 7_3:+58197306 Msa1112230:CDS
TGCTAGGATTTGGAGTTGTA+TGG 0.455824 7_3:+58195375 Msa1112230:CDS
CCAAAGGATGACCCGGATCT+CGG 0.456410 7_3:+58196284 Msa1112230:CDS
ATGCGTGCCTTTATGGGAAT+CGG 0.457296 7_3:+58195461 Msa1112230:CDS
ATTGTGCATGGCATGCAGTC+AGG 0.462532 7_3:+58196941 Msa1112230:CDS
CCAGATTGCAAATAACCCTT+TGG 0.462987 7_3:+58194494 Msa1112230:CDS
TGCTGCCACCAAGGAGATAC+CGG 0.463119 7_3:-58194702 None:intergenic
CAGTTTCAAATTGTCATGCA+TGG 0.469666 7_3:-58193617 None:intergenic
TCGGATGCCTTCTCACAGTC+TGG 0.475944 7_3:+58197102 Msa1112230:CDS
CTCCGAAACTGGAATCCACT+TGG 0.479863 7_3:-58195949 None:intergenic
AGCCCAATTCTTGCAGCAAT+AGG 0.485315 7_3:-58195422 None:intergenic
TATTCCAATCATCAAGACAT+TGG 0.488754 7_3:+58197129 Msa1112230:CDS
ATATATTCTAACATGTGATA+AGG 0.492149 7_3:+58193656 Msa1112230:five_prime_UTR
ATTAAACCACTTATAGCCAT+TGG 0.496105 7_3:-58193728 None:intergenic
ACATAATAGGCACACTGGTA+TGG 0.496734 7_3:+58197530 Msa1112230:CDS
GCAATTCTATTGGAAGGAAA+CGG 0.498658 7_3:+58194675 Msa1112230:CDS
TGGATTATGCTTCTTGCCAA+AGG 0.504647 7_3:-58194510 None:intergenic
CTGGGGCTATCTACTTACTC+AGG 0.504684 7_3:+58195198 Msa1112230:CDS
TTTCCTCTACCCCGAGATCC+GGG 0.506435 7_3:-58196295 None:intergenic
ACGGTTCGCCGGTATCTCCT+TGG 0.507040 7_3:+58194694 Msa1112230:CDS
CCCTCCAATATTTGCAAACA+CGG 0.508594 7_3:-58196629 None:intergenic
GCTCACGAGTTTCAATTTCA+GGG 0.508678 7_3:+58197294 Msa1112230:CDS
TGGTCCAATGTCTTGATGAT+TGG 0.510028 7_3:-58197133 None:intergenic
TTTGATAGAATTAATTTCCA+AGG 0.514333 7_3:-58196368 None:intergenic
CAGTTAAACTCTTGTGACAT+TGG 0.514473 7_3:-58195136 None:intergenic
TTCCAAGGAATGTCCGAGAC+AGG 0.516044 7_3:-58196353 None:intergenic
GACAGTATATTATTCATGGC+GGG 0.516181 7_3:-58195927 None:intergenic
TCACTTTCGCTAGTATATAG+TGG 0.520640 7_3:+58195981 Msa1112230:CDS
GGATTATGCTTCTTGCCAAA+GGG 0.523230 7_3:-58194509 None:intergenic
AAAGTGAGAAGTTAAAATCA+AGG 0.525786 7_3:-58197680 None:intergenic
TTCTTATCCAAAACCTTGGG+TGG 0.525807 7_3:+58196045 Msa1112230:CDS
GAGATTATAAGAGCCCAAAC+TGG 0.527723 7_3:-58196395 None:intergenic
TGACCCGGATCTCGGGGTAG+AGG 0.528268 7_3:+58196292 Msa1112230:CDS
TATATTATTCATGGCGGGCA+TGG 0.532851 7_3:-58195922 None:intergenic
ATTGGAAGGAAACGGTTCGC+CGG 0.533564 7_3:+58194683 Msa1112230:CDS
GGTATATGGGCAGACAAACT+TGG 0.535648 7_3:+58195341 Msa1112230:CDS
CATTATCAACATAGCACCAA+TGG 0.536893 7_3:+58193712 Msa1112230:exon
GATCCTGTGGCATCTGATGA+AGG 0.540723 7_3:+58194642 Msa1112230:CDS
ATATATTTCAAGTTTGATTG+TGG 0.540761 7_3:-58197942 None:intergenic
ATTACGATAAGCCAGCGCTT+AGG 0.542049 7_3:-58194729 None:intergenic
GGCAGATCATGCAATCAATC+GGG 0.542373 7_3:+58196856 Msa1112230:intron
ACCTTTGCTAACTAACGTGT+CGG 0.543679 7_3:-58196659 None:intergenic
TGGAGTTGTATGGTGGTCAA+TGG 0.544883 7_3:+58195385 Msa1112230:CDS
GAATAAATGTTCCCCAATTG+TGG 0.546749 7_3:-58196427 None:intergenic
GTTCGCCGGTATCTCCTTGG+TGG 0.551744 7_3:+58194697 Msa1112230:CDS
CTTGGTGGGAAGGTCGTGCT+AGG 0.552485 7_3:+58195359 Msa1112230:CDS
AAATGTATATCAATTGAGAA+AGG 0.557856 7_3:+58194425 Msa1112230:CDS
TTCCATAACAACTGTTCGAA+AGG 0.559878 7_3:+58196684 Msa1112230:CDS
TCTCATTTCTGCCACAATTG+GGG 0.559881 7_3:+58196416 Msa1112230:CDS
ATGCACAATACTGCCATGGC+GGG 0.561244 7_3:-58196927 None:intergenic
GTGGCATCTGATGAAGGAAC+AGG 0.561358 7_3:+58194648 Msa1112230:CDS
TGAAGAGTGTGATGATGTAA+AGG 0.564550 7_3:+58197586 Msa1112230:exon
ATGTATAGAGAGAGATACCA+TGG 0.565302 7_3:+58197635 Msa1112230:three_prime_UTR
GAACATTTATTCTATTAACA+TGG 0.567906 7_3:+58196438 Msa1112230:CDS
CGCCATGGCAGTATTGTGCA+TGG 0.568359 7_3:+58196929 Msa1112230:CDS
AGTTCAACCTCACTGAATCT+GGG 0.568787 7_3:+58196575 Msa1112230:CDS
GTATATAGTGGCATGTACCT+TGG 0.570408 7_3:+58195993 Msa1112230:CDS
GGTGAAGCAATTCTATTGGA+AGG 0.572754 7_3:+58194669 Msa1112230:CDS
AACTGAGGAGCTATATGTAT+CGG 0.573617 7_3:-58193688 None:intergenic
CGTATCGAAAACACCTGTCT+CGG 0.576166 7_3:+58196340 Msa1112230:CDS
GATCTATTACCTCGAAGAGT+GGG 0.577340 7_3:+58194447 Msa1112230:CDS
AGAAGTTAAAATCAAGGCCA+CGG 0.579729 7_3:-58197674 None:intergenic
CCATGTCAAAACACCCGCCA+TGG 0.580413 7_3:+58196914 Msa1112230:CDS
TGGCATGTACCTTGGTTCTG+TGG 0.581569 7_3:+58196001 Msa1112230:CDS
GGCAGACAAACTTGGTGGGA+AGG 0.582949 7_3:+58195349 Msa1112230:CDS
GCCGTGTTTGCAAATATTGG+AGG 0.583856 7_3:+58196628 Msa1112230:CDS
CTGGGACTATCGAATACAGC+AGG 0.588965 7_3:+58197324 Msa1112230:CDS
GGATCTATTACCTCGAAGAG+TGG 0.589038 7_3:+58194446 Msa1112230:CDS
ATAACCTGATTATAGTAAGT+AGG 0.589115 7_3:-58196464 None:intergenic
CCAAATGAGTAAAACACTGA+TGG 0.590761 7_3:-58196068 None:intergenic
ATAGCACCAATGGCTATAAG+TGG 0.591240 7_3:+58193722 Msa1112230:exon
AGAAGTGGTGAAGCTTCTGT+TGG 0.593124 7_3:-58193753 None:intergenic
AATATTTGCAAACACGGCCA+TGG 0.597293 7_3:-58196623 None:intergenic
AACTGGAACAGTGCAACAGT+TGG 0.597654 7_3:+58195154 Msa1112230:CDS
GCTATATGTATCGGTGAGAG+TGG 0.599102 7_3:-58193679 None:intergenic
TGTGTGGCCTATATATAGCA+AGG 0.599611 7_3:+58197611 Msa1112230:three_prime_UTR
TCTGAGAGAGAAAGCATAAG+CGG 0.601461 7_3:+58193582 Msa1112230:five_prime_UTR
AGGCAAACCAGATACTTCCA+AGG 0.606900 7_3:-58196094 None:intergenic
TGTTCTTCCATGGTTAACCA+TGG 0.609195 7_3:+58196606 Msa1112230:CDS
GTTCCTTCATCAGATGCCAC+AGG 0.609692 7_3:-58194645 None:intergenic
TTTGCATCTAAAGTAAGCAA+AGG 0.609849 7_3:+58197731 Msa1112230:three_prime_UTR
CTGCACATAAAATTTGACAC+AGG 0.612237 7_3:+58197882 Msa1112230:three_prime_UTR
TGCCATGCACAATACTGCCA+TGG 0.612350 7_3:-58196931 None:intergenic
ATGTTCTTATAAACTGAGTG+TGG 0.623337 7_3:-58197834 None:intergenic
TATGGGCAGACAAACTTGGT+GGG 0.623534 7_3:+58195345 Msa1112230:CDS
TAGCTCACCAAAGGATGACC+CGG 0.624891 7_3:+58196277 Msa1112230:CDS
TAGATGCAAACTCACTTCAG+AGG 0.627690 7_3:-58197718 None:intergenic
ATATGGGCAGACAAACTTGG+TGG 0.628033 7_3:+58195344 Msa1112230:CDS
TGAATAATATACTGTCCAAG+TGG 0.631779 7_3:+58195934 Msa1112230:CDS
TCTCTCTCAGATAATAAGCA+AGG 0.633928 7_3:-58193570 None:intergenic
GGAATTTCTGGTGTGCATCA+CGG 0.634486 7_3:+58194468 Msa1112230:CDS
TAGGATTTGGAGTTGTATGG+TGG 0.635420 7_3:+58195378 Msa1112230:CDS
AACACGGCCATGGTTAACCA+TGG 0.638076 7_3:-58196613 None:intergenic
ATTATACATAATAGGCACAC+TGG 0.640114 7_3:+58197525 Msa1112230:CDS
TTAGGAAGCTGCTGCCACCA+AGG 0.640825 7_3:-58194711 None:intergenic
AAAGGATGACCCGGATCTCG+GGG 0.643756 7_3:+58196286 Msa1112230:CDS
ATAAAGACCAGACTGTGAGA+AGG 0.653878 7_3:-58197109 None:intergenic
CCAGGCATATAGCTCACCAA+AGG 0.658284 7_3:+58196268 Msa1112230:intron
CCGTGTTTGCAAATATTGGA+GGG 0.658652 7_3:+58196629 Msa1112230:CDS
GGCAAACCAGATACTTCCAA+GGG 0.659415 7_3:-58196093 None:intergenic
TGTTTGCAAATATTGGAGGG+TGG 0.661112 7_3:+58196632 Msa1112230:CDS
GCACGCATAATAAGCAAACA+AGG 0.665091 7_3:-58195446 None:intergenic
AAAACACTGATGGCCACCCA+AGG 0.665588 7_3:-58196058 None:intergenic
ACCTGAAGCAATGAAAGAAG+TGG 0.666243 7_3:-58193768 None:intergenic
ACTGGATACATACTTCAAAG+AGG 0.666637 7_3:+58197378 Msa1112230:CDS
GTGTGGCCTATATATAGCAA+GGG 0.666762 7_3:+58197612 Msa1112230:three_prime_UTR
GGACAGTATATTATTCATGG+CGG 0.671998 7_3:-58195928 None:intergenic
TGCCTTTATGGGAATCGGTG+AGG 0.677573 7_3:+58195466 Msa1112230:CDS
AAATTACTCACAGCATAGCG+TGG 0.677974 7_3:-58197153 None:intergenic
TGAAACGAAGATAGATCCTG+TGG 0.691215 7_3:+58194629 Msa1112230:CDS
TGATGATGTAAAGGAATGTG+TGG 0.694227 7_3:+58197595 Msa1112230:three_prime_UTR
CATGCACAATACTGCCATGG+CGG 0.706051 7_3:-58196928 None:intergenic
CTATGTTGATAATGAAACTG+AGG 0.706723 7_3:-58193703 None:intergenic
CCAAGCCTACCACAGAACCA+AGG 0.711808 7_3:-58196010 None:intergenic
ATTTCTGGTGTGCATCACGG+TGG 0.730241 7_3:+58194471 Msa1112230:CDS
ATAAGAGCCCAGATTCAGTG+AGG 0.769613 7_3:-58196582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTGTAAAAAAAAAAAAATTA+TGG - chr7_3:58197079-58197098 None:intergenic 10.0%
!!! CATAATTTTTTTTTTTTTAC+AGG + chr7_3:58197077-58197096 Msa1112230:intron 10.0%
!! TTTCAAATAAAAAAATTTGG+TGG + chr7_3:58193871-58193890 Msa1112230:intron 15.0%
!! AAAAATTAATACAAAAAGAC+AGG - chr7_3:58193967-58193986 None:intergenic 15.0%
!!! TTGATATTTTGATAAAACTA+TGG + chr7_3:58194136-58194155 Msa1112230:intron 15.0%
!! TAAAATCATATTTACAAACA+AGG - chr7_3:58194383-58194402 None:intergenic 15.0%
!! CTTAATATATATGGATAATA+TGG + chr7_3:58196835-58196854 Msa1112230:intron 15.0%
!! AAAAAATTATGGTTTGAATT+AGG - chr7_3:58197068-58197087 None:intergenic 15.0%
!! ATATATTCTAACATGTGATA+AGG + chr7_3:58193656-58193675 Msa1112230:five_prime_UTR 20.0%
!! TAATACAATTCATAAAATGC+TGG - chr7_3:58193900-58193919 None:intergenic 20.0%
!!! CAAAGCATTGATATTATTTT+AGG + chr7_3:58194229-58194248 Msa1112230:intron 20.0%
!!! TTTTAGTAACTCTTTGATAT+TGG + chr7_3:58194398-58194417 Msa1112230:intron 20.0%
!! AAATGTATATCAATTGAGAA+AGG + chr7_3:58194425-58194444 Msa1112230:CDS 20.0%
!! ATATGAAATCAATTCTTGTT+AGG - chr7_3:58195259-58195278 None:intergenic 20.0%
!! ATAACATTGTTATGTTATGA+TGG + chr7_3:58195294-58195313 Msa1112230:intron 20.0%
!!! TTTTTTTCTTCTTAGATTCT+TGG + chr7_3:58195317-58195336 Msa1112230:intron 20.0%
!!! AAGATATTTTCTCTTTTGAA+TGG + chr7_3:58195657-58195676 Msa1112230:intron 20.0%
!! AGAATTAATGTTAGTATGTA+TGG + chr7_3:58195787-58195806 Msa1112230:intron 20.0%
!!! TGAATTATTTTGTGTTAAGA+GGG - chr7_3:58195879-58195898 None:intergenic 20.0%
!!! TTGAATTATTTTGTGTTAAG+AGG - chr7_3:58195880-58195899 None:intergenic 20.0%
!!! AATTCAAACTATTTGTTTTC+AGG + chr7_3:58195893-58195912 Msa1112230:intron 20.0%
!!! ATTCAAACTATTTGTTTTCA+GGG + chr7_3:58195894-58195913 Msa1112230:intron 20.0%
!! TTTGATAGAATTAATTTCCA+AGG - chr7_3:58196371-58196390 None:intergenic 20.0%
!! GAACATTTATTCTATTAACA+TGG + chr7_3:58196438-58196457 Msa1112230:CDS 20.0%
!! AAATGTATTATACAAAGCAT+AGG - chr7_3:58196493-58196512 None:intergenic 20.0%
!!! AAGCTAATTTGTATTTTATC+AGG + chr7_3:58196546-58196565 Msa1112230:intron 20.0%
!! TATTCTGCTCTTAATATATA+TGG + chr7_3:58196826-58196845 Msa1112230:intron 20.0%
!!! TTTTTTTTTTTTACAGGGAT+CGG + chr7_3:58197083-58197102 Msa1112230:intron 20.0%
!! CTTTGCAATTTATATATCAT+TGG + chr7_3:58197439-58197458 Msa1112230:intron 20.0%
!!! TATGGAATATATTTTCTACT+GGG + chr7_3:58197548-58197567 Msa1112230:CDS 20.0%
!!! ATATATTTCAAGTTTGATTG+TGG - chr7_3:58197945-58197964 None:intergenic 20.0%
! AGTTGAGTGAAAATTAAAAG+TGG - chr7_3:58193807-58193826 None:intergenic 25.0%
!!! TTTTAGGACTTGTATTAGTT+TGG + chr7_3:58194245-58194264 Msa1112230:intron 25.0%
!!! GGATCACTATATTTTAAACT+AGG + chr7_3:58194307-58194326 Msa1112230:intron 25.0%
! TCCTTCATATTGTAATATAC+AGG + chr7_3:58195090-58195109 Msa1112230:intron 25.0%
! ACCTGTATATTACAATATGA+AGG - chr7_3:58195094-58195113 None:intergenic 25.0%
! AGAAAAAAGATGACTGAATT+AGG - chr7_3:58195180-58195199 None:intergenic 25.0%
!!! TAATTCAGTCATCTTTTTTC+TGG + chr7_3:58195179-58195198 Msa1112230:CDS 25.0%
!!! AATTCAGTCATCTTTTTTCT+GGG + chr7_3:58195180-58195199 Msa1112230:CDS 25.0%
! TAACATAACAATGTTATGCT+AGG - chr7_3:58195291-58195310 None:intergenic 25.0%
! TTCATAGCAAAACTGATAAT+TGG - chr7_3:58195574-58195593 None:intergenic 25.0%
! AAGAGAAAATATCTTCGATT+TGG - chr7_3:58195652-58195671 None:intergenic 25.0%
! TAACATATAAATACAGCTTG+TGG - chr7_3:58195739-58195758 None:intergenic 25.0%
! GTAGATTTCATCGAAATTAA+GGG - chr7_3:58196147-58196166 None:intergenic 25.0%
! AGTAGATTTCATCGAAATTA+AGG - chr7_3:58196148-58196167 None:intergenic 25.0%
! GCTATTCATGATATGTTAAA+TGG + chr7_3:58196195-58196214 Msa1112230:intron 25.0%
! TTCATGATATGTTAAATGGA+AGG + chr7_3:58196199-58196218 Msa1112230:intron 25.0%
! TCATGATATGTTAAATGGAA+GGG + chr7_3:58196200-58196219 Msa1112230:intron 25.0%
! ATAACCTGATTATAGTAAGT+AGG - chr7_3:58196467-58196486 None:intergenic 25.0%
!!! AAATTAGCTTGTTGATTCAA+TGG - chr7_3:58196536-58196555 None:intergenic 25.0%
! ATTTGTAATAGTTGTTGATC+TGG - chr7_3:58196744-58196763 None:intergenic 25.0%
! ATTTGAGGAATTCAAACTAA+AGG - chr7_3:58196988-58197007 None:intergenic 25.0%
!! AGTTTGAATTCCTCAAATTT+TGG + chr7_3:58196990-58197009 Msa1112230:intron 25.0%
! AAATTATGGTTTGAATTAGG+TGG - chr7_3:58197065-58197084 None:intergenic 25.0%
!! TATATGTGATTTTTCATTGC+AGG + chr7_3:58197469-58197488 Msa1112230:intron 25.0%
! TCTGTTGCATTATACATAAT+AGG + chr7_3:58197517-58197536 Msa1112230:CDS 25.0%
!! GTATGGAATATATTTTCTAC+TGG + chr7_3:58197547-58197566 Msa1112230:CDS 25.0%
!! ATGGAATATATTTTCTACTG+GGG + chr7_3:58197549-58197568 Msa1112230:CDS 25.0%
! AAAGTGAGAAGTTAAAATCA+AGG - chr7_3:58197683-58197702 None:intergenic 25.0%
! CATTTCAAATCAGTATTAGA+TGG + chr7_3:58197794-58197813 Msa1112230:three_prime_UTR 25.0%
!!! AGAAAAGGTATTTGCAAAAA+GGG - chr7_3:58197864-58197883 None:intergenic 25.0%
!! TCAAATTTTATGTGCAGAAA+AGG - chr7_3:58197879-58197898 None:intergenic 25.0%
!! AATAGACAATGTTTTACATG+TGG - chr7_3:58197914-58197933 None:intergenic 25.0%
!! CTATGTTGATAATGAAACTG+AGG - chr7_3:58193706-58193725 None:intergenic 30.0%
ATTAAACCACTTATAGCCAT+TGG - chr7_3:58193731-58193750 None:intergenic 30.0%
GTGAAAATTAAAAGTGGTTG+AGG - chr7_3:58193801-58193820 None:intergenic 30.0%
! ATTTTCCCACAAACTTTTCA+TGG + chr7_3:58194040-58194059 Msa1112230:intron 30.0%
TCTTACCATGAAAAGTTTGT+GGG - chr7_3:58194048-58194067 None:intergenic 30.0%
TGTGCGAATATTTGTTTATG+TGG + chr7_3:58194106-58194125 Msa1112230:intron 30.0%
! ACTAGGCTTAAATGTAGTTT+TGG + chr7_3:58194324-58194343 Msa1112230:intron 30.0%
ATACGTCTCTTTGTTCAATA+TGG - chr7_3:58194533-58194552 None:intergenic 30.0%
ATTGAACAAAGAGACGTATA+TGG + chr7_3:58194534-58194553 Msa1112230:CDS 30.0%
! AGCTTTTCTTTTATGCAACA+TGG + chr7_3:58194764-58194783 Msa1112230:intron 30.0%
CTATGTGTACAATGTATGTT+TGG + chr7_3:58194828-58194847 Msa1112230:intron 30.0%
TGTACAATGTATGTTTGGAT+TGG + chr7_3:58194833-58194852 Msa1112230:intron 30.0%
AAGATATATGACAGTGTGTT+TGG - chr7_3:58194979-58194998 None:intergenic 30.0%
! TACATTCGAAATTTGAGACA+TGG - chr7_3:58195010-58195029 None:intergenic 30.0%
!!! ATTCAGTCATCTTTTTTCTG+GGG + chr7_3:58195181-58195200 Msa1112230:CDS 30.0%
! TTTTCTTCTTAGATTCTTGG+TGG + chr7_3:58195320-58195339 Msa1112230:intron 30.0%
! TTAGATTCTTGGTGGTATAT+GGG + chr7_3:58195328-58195347 Msa1112230:intron 30.0%
! TTTTGCATAACACGAAAAGA+TGG - chr7_3:58195551-58195570 None:intergenic 30.0%
TTAGTAAGCTATACTCTACA+CGG - chr7_3:58195698-58195717 None:intergenic 30.0%
CTTGGACAGTATATTATTCA+TGG - chr7_3:58195934-58195953 None:intergenic 30.0%
TGAATAATATACTGTCCAAG+TGG + chr7_3:58195934-58195953 Msa1112230:CDS 30.0%
! CTTTTCTTATCCAAAACCTT+GGG + chr7_3:58196042-58196061 Msa1112230:CDS 30.0%
!! ACTTACTTTTCTCAACCAAA+AGG - chr7_3:58196117-58196136 None:intergenic 30.0%
ACATATCATGAATAGCGATA+TGG - chr7_3:58196191-58196210 None:intergenic 30.0%
CATGATATGTTAAATGGAAG+GGG + chr7_3:58196201-58196220 Msa1112230:intron 30.0%
GACAATATTTCAGTAACAAG+TGG - chr7_3:58196718-58196737 None:intergenic 30.0%
!! CATAAAAGTGCCAAAATTTG+AGG - chr7_3:58197003-58197022 None:intergenic 30.0%
CATATGCAAACATGTTGTAT+TGG - chr7_3:58197026-58197045 None:intergenic 30.0%
TATTCCAATCATCAAGACAT+TGG + chr7_3:58197129-58197148 Msa1112230:CDS 30.0%
! CTATGAAATTTTACTGGTCA+TGG - chr7_3:58197191-58197210 None:intergenic 30.0%
ATTATACATAATAGGCACAC+TGG + chr7_3:58197525-58197544 Msa1112230:CDS 30.0%
! ATACATCCCTTGCTATATAT+AGG - chr7_3:58197621-58197640 None:intergenic 30.0%
! TTTGCATCTAAAGTAAGCAA+AGG + chr7_3:58197731-58197750 Msa1112230:three_prime_UTR 30.0%
ATGTTCTTATAAACTGAGTG+TGG - chr7_3:58197837-58197856 None:intergenic 30.0%
!! AAAAGGTATTTGCAAAAAGG+GGG - chr7_3:58197862-58197881 None:intergenic 30.0%
!! GAAAAGGTATTTGCAAAAAG+GGG - chr7_3:58197863-58197882 None:intergenic 30.0%
!! CAGAAAAGGTATTTGCAAAA+AGG - chr7_3:58197865-58197884 None:intergenic 30.0%
TCTCTCTCAGATAATAAGCA+AGG - chr7_3:58193573-58193592 None:intergenic 35.0%
CAGTTTCAAATTGTCATGCA+TGG - chr7_3:58193620-58193639 None:intergenic 35.0%
AACTGAGGAGCTATATGTAT+CGG - chr7_3:58193691-58193710 None:intergenic 35.0%
CATTATCAACATAGCACCAA+TGG + chr7_3:58193712-58193731 Msa1112230:exon 35.0%
CTCTTACCATGAAAAGTTTG+TGG - chr7_3:58194049-58194068 None:intergenic 35.0%
TATTCGCACAATCCATACAA+GGG - chr7_3:58194096-58194115 None:intergenic 35.0%
ATATTCGCACAATCCATACA+AGG - chr7_3:58194097-58194116 None:intergenic 35.0%
CCACATAAACCAAACTTAGA+GGG - chr7_3:58194289-58194308 None:intergenic 35.0%
TCCACATAAACCAAACTTAG+AGG - chr7_3:58194290-58194309 None:intergenic 35.0%
AGTAACTCTTTGATATTGGC+AGG + chr7_3:58194402-58194421 Msa1112230:intron 35.0%
CAAAGAGACGTATATGGATT+AGG + chr7_3:58194540-58194559 Msa1112230:CDS 35.0%
AACAGGTGAAGCAATTCTAT+TGG + chr7_3:58194665-58194684 Msa1112230:CDS 35.0%
GCAATTCTATTGGAAGGAAA+CGG + chr7_3:58194675-58194694 Msa1112230:CDS 35.0%
ACCAAGATAAGATACTCACA+CGG - chr7_3:58194791-58194810 None:intergenic 35.0%
!! ATGTATGTTTGGATTGGTGA+CGG + chr7_3:58194839-58194858 Msa1112230:intron 35.0%
AGAATCACAGTGCAAAATCA+CGG - chr7_3:58194938-58194957 None:intergenic 35.0%
CAGTTAAACTCTTGTGACAT+TGG - chr7_3:58195139-58195158 None:intergenic 35.0%
CAATGTCACAAGAGTTTAAC+TGG + chr7_3:58195137-58195156 Msa1112230:CDS 35.0%
! CTTAGATTCTTGGTGGTATA+TGG + chr7_3:58195327-58195346 Msa1112230:intron 35.0%
CTTATTATGCGTGCCTTTAT+GGG + chr7_3:58195455-58195474 Msa1112230:CDS 35.0%
GTTTCCAGTAACTAGTCATA+TGG + chr7_3:58195516-58195535 Msa1112230:intron 35.0%
! CTAACCATATGACTAGTTAC+TGG - chr7_3:58195523-58195542 None:intergenic 35.0%
GACAGTATATTATTCATGGC+GGG - chr7_3:58195930-58195949 None:intergenic 35.0%
GGACAGTATATTATTCATGG+CGG - chr7_3:58195931-58195950 None:intergenic 35.0%
TCACTTTCGCTAGTATATAG+TGG + chr7_3:58195981-58196000 Msa1112230:CDS 35.0%
!!! CCAAGGTTTTGGATAAGAAA+AGG - chr7_3:58196044-58196063 None:intergenic 35.0%
! CCTTTTCTTATCCAAAACCT+TGG + chr7_3:58196041-58196060 Msa1112230:CDS 35.0%
CCAAATGAGTAAAACACTGA+TGG - chr7_3:58196071-58196090 None:intergenic 35.0%
! CCATCAGTGTTTTACTCATT+TGG + chr7_3:58196068-58196087 Msa1112230:CDS 35.0%
! TTTTACTCATTTGGATCCCT+TGG + chr7_3:58196077-58196096 Msa1112230:CDS 35.0%
! ACTCCTCTTTTGTTCTTTCT+TGG + chr7_3:58196225-58196244 Msa1112230:intron 35.0%
TTGCCAAGAAAGAACAAAAG+AGG - chr7_3:58196231-58196250 None:intergenic 35.0%
AGTAAACTCATTTCCTTTCC+AGG + chr7_3:58196250-58196269 Msa1112230:intron 35.0%
GAAAAAAAGCTCATCCTTGA+AGG + chr7_3:58196314-58196333 Msa1112230:CDS 35.0%
!! TTCTATCAAAAGCACCAGTT+TGG + chr7_3:58196381-58196400 Msa1112230:CDS 35.0%
!! TCTATCAAAAGCACCAGTTT+GGG + chr7_3:58196382-58196401 Msa1112230:CDS 35.0%
GAATAAATGTTCCCCAATTG+TGG - chr7_3:58196430-58196449 None:intergenic 35.0%
GATGCCTACTTACTATAATC+AGG + chr7_3:58196460-58196479 Msa1112230:CDS 35.0%
TTCCATAACAACTGTTCGAA+AGG + chr7_3:58196684-58196703 Msa1112230:CDS 35.0%
TACCTTTCGAACAGTTGTTA+TGG - chr7_3:58196689-58196708 None:intergenic 35.0%
TTAACAGAATGCCGTATAGA+AGG + chr7_3:58196771-58196790 Msa1112230:intron 35.0%
CCGAACAATTTCCTTCTATA+CGG - chr7_3:58196785-58196804 None:intergenic 35.0%
CCGTATAGAAGGAAATTGTT+CGG + chr7_3:58196782-58196801 Msa1112230:intron 35.0%
! CACGCACTATGAAATTTTAC+TGG - chr7_3:58197197-58197216 None:intergenic 35.0%
TTTCATAGTGCGTGAAATTC+TGG + chr7_3:58197203-58197222 Msa1112230:intron 35.0%
! CTGAGTGATGACTTGTATAA+TGG - chr7_3:58197237-58197256 None:intergenic 35.0%
ACTGGATACATACTTCAAAG+AGG + chr7_3:58197378-58197397 Msa1112230:CDS 35.0%
AAATGAATGTGGAGAACTCT+CGG - chr7_3:58197405-58197424 None:intergenic 35.0%
AGAGTTCTCCACATTCATTT+CGG + chr7_3:58197405-58197424 Msa1112230:intron 35.0%
TGTAAACTCCGAAATGAATG+TGG - chr7_3:58197416-58197435 None:intergenic 35.0%
! GATTTTTCATTGCAGGTTCT+TGG + chr7_3:58197476-58197495 Msa1112230:intron 35.0%
TTCTTGGAATGACGTGTTTA+AGG + chr7_3:58197492-58197511 Msa1112230:CDS 35.0%
! TGAAGAGTGTGATGATGTAA+AGG + chr7_3:58197586-58197605 Msa1112230:exon 35.0%
! TGATGATGTAAAGGAATGTG+TGG + chr7_3:58197595-58197614 Msa1112230:three_prime_UTR 35.0%
ATGTATAGAGAGAGATACCA+TGG + chr7_3:58197635-58197654 Msa1112230:three_prime_UTR 35.0%
!!! GTTTTTGGTGAAAACTTCCA+TGG - chr7_3:58197655-58197674 None:intergenic 35.0%
AGAAGTTAAAATCAAGGCCA+CGG - chr7_3:58197677-58197696 None:intergenic 35.0%
CTGCACATAAAATTTGACAC+AGG + chr7_3:58197882-58197901 Msa1112230:three_prime_UTR 35.0%
! GACAATGTTTTACATGTGGA+AGG - chr7_3:58197910-58197929 None:intergenic 35.0%
! TCTGAGAGAGAAAGCATAAG+CGG + chr7_3:58193582-58193601 Msa1112230:five_prime_UTR 40.0%
ATAGCACCAATGGCTATAAG+TGG + chr7_3:58193722-58193741 Msa1112230:exon 40.0%
ACCACTTCTTTCATTGCTTC+AGG + chr7_3:58193767-58193786 Msa1112230:CDS 40.0%
ACCTGAAGCAATGAAAGAAG+TGG - chr7_3:58193771-58193790 None:intergenic 40.0%
CAAACTTAGAGGGTTTCAAG+AGG - chr7_3:58194279-58194298 None:intergenic 40.0%
CTCTTGAAACCCTCTAAGTT+TGG + chr7_3:58194277-58194296 Msa1112230:intron 40.0%
! CCCTCTAAGTTTGGTTTATG+TGG + chr7_3:58194286-58194305 Msa1112230:intron 40.0%
ATCGCGAATCGGTGAAAATA+GGG - chr7_3:58194352-58194371 None:intergenic 40.0%
AATCGCGAATCGGTGAAAAT+AGG - chr7_3:58194353-58194372 None:intergenic 40.0%
AGGCAACTAAAATCGCGAAT+CGG - chr7_3:58194363-58194382 None:intergenic 40.0%
GATCTATTACCTCGAAGAGT+GGG + chr7_3:58194447-58194466 Msa1112230:CDS 40.0%
CCAAAGGGTTATTTGCAATC+TGG - chr7_3:58194497-58194516 None:intergenic 40.0%
CCAGATTGCAAATAACCCTT+TGG + chr7_3:58194494-58194513 Msa1112230:CDS 40.0%
GGATTATGCTTCTTGCCAAA+GGG - chr7_3:58194512-58194531 None:intergenic 40.0%
TGGATTATGCTTCTTGCCAA+AGG - chr7_3:58194513-58194532 None:intergenic 40.0%
TGAAACGAAGATAGATCCTG+TGG + chr7_3:58194629-58194648 Msa1112230:CDS 40.0%
GGTGAAGCAATTCTATTGGA+AGG + chr7_3:58194669-58194688 Msa1112230:CDS 40.0%
ACCGTGTGAGTATCTTATCT+TGG + chr7_3:58194787-58194806 Msa1112230:intron 40.0%
! TGACAGTGTGTTTGGATTAG+CGG - chr7_3:58194971-58194990 None:intergenic 40.0%
TTACTCAGGTGTGATTGCTA+TGG + chr7_3:58195212-58195231 Msa1112230:intron 40.0%
TACTCAGGTGTGATTGCTAT+GGG + chr7_3:58195213-58195232 Msa1112230:intron 40.0%
! TGCTAGGATTTGGAGTTGTA+TGG + chr7_3:58195375-58195394 Msa1112230:CDS 40.0%
! TAGGATTTGGAGTTGTATGG+TGG + chr7_3:58195378-58195397 Msa1112230:CDS 40.0%
ACACCTATTGCTGCAAGAAT+TGG + chr7_3:58195419-58195438 Msa1112230:CDS 40.0%
CACCTATTGCTGCAAGAATT+GGG + chr7_3:58195420-58195439 Msa1112230:CDS 40.0%
GCACGCATAATAAGCAAACA+AGG - chr7_3:58195449-58195468 None:intergenic 40.0%
GCTTATTATGCGTGCCTTTA+TGG + chr7_3:58195454-58195473 Msa1112230:CDS 40.0%
!! TATATTATTCATGGCGGGCA+TGG - chr7_3:58195925-58195944 None:intergenic 40.0%
GTATATAGTGGCATGTACCT+TGG + chr7_3:58195993-58196012 Msa1112230:CDS 40.0%
TTCTTATCCAAAACCTTGGG+TGG + chr7_3:58196045-58196064 Msa1112230:CDS 40.0%
!! GAAGTATCTGGTTTGCCTTT+TGG + chr7_3:58196099-58196118 Msa1112230:CDS 40.0%
AAAAAGCTCATCCTTGAAGG+CGG + chr7_3:58196317-58196336 Msa1112230:CDS 40.0%
GAGATTATAAGAGCCCAAAC+TGG - chr7_3:58196398-58196417 None:intergenic 40.0%
TCTCTCATTTCTGCCACAAT+TGG + chr7_3:58196414-58196433 Msa1112230:CDS 40.0%
CTCTCATTTCTGCCACAATT+GGG + chr7_3:58196415-58196434 Msa1112230:CDS 40.0%
TCTCATTTCTGCCACAATTG+GGG + chr7_3:58196416-58196435 Msa1112230:CDS 40.0%
AAGTTCAACCTCACTGAATC+TGG + chr7_3:58196574-58196593 Msa1112230:CDS 40.0%
AGTTCAACCTCACTGAATCT+GGG + chr7_3:58196575-58196594 Msa1112230:CDS 40.0%
TGTTCTTCCATGGTTAACCA+TGG + chr7_3:58196606-58196625 Msa1112230:CDS 40.0%
AATATTTGCAAACACGGCCA+TGG - chr7_3:58196626-58196645 None:intergenic 40.0%
ATGGCCGTGTTTGCAAATAT+TGG + chr7_3:58196625-58196644 Msa1112230:CDS 40.0%
CCCTCCAATATTTGCAAACA+CGG - chr7_3:58196632-58196651 None:intergenic 40.0%
CCGTGTTTGCAAATATTGGA+GGG + chr7_3:58196629-58196648 Msa1112230:CDS 40.0%
TGTTTGCAAATATTGGAGGG+TGG + chr7_3:58196632-58196651 Msa1112230:CDS 40.0%
ACCTTTGCTAACTAACGTGT+CGG - chr7_3:58196662-58196681 None:intergenic 40.0%
TGGCAGATCATGCAATCAAT+CGG + chr7_3:58196855-58196874 Msa1112230:intron 40.0%
ATGCAATCAATCGGGTTTCT+AGG + chr7_3:58196864-58196883 Msa1112230:CDS 40.0%
AGTTGCGTAAGAAAAAAGGC+AGG - chr7_3:58196891-58196910 None:intergenic 40.0%
GCTCAGTTGCGTAAGAAAAA+AGG - chr7_3:58196895-58196914 None:intergenic 40.0%
GAATTAGGTGGCTGCATATA+TGG - chr7_3:58197053-58197072 None:intergenic 40.0%
ATAAAGACCAGACTGTGAGA+AGG - chr7_3:58197112-58197131 None:intergenic 40.0%
! TGGTCCAATGTCTTGATGAT+TGG - chr7_3:58197136-58197155 None:intergenic 40.0%
AAATTACTCACAGCATAGCG+TGG - chr7_3:58197156-58197175 None:intergenic 40.0%
TGCTCACGAGTTTCAATTTC+AGG + chr7_3:58197293-58197312 Msa1112230:CDS 40.0%
GCTCACGAGTTTCAATTTCA+GGG + chr7_3:58197294-58197313 Msa1112230:CDS 40.0%
ACATAATAGGCACACTGGTA+TGG + chr7_3:58197530-58197549 Msa1112230:CDS 40.0%
TGTGTGGCCTATATATAGCA+AGG + chr7_3:58197611-58197630 Msa1112230:three_prime_UTR 40.0%
GTGTGGCCTATATATAGCAA+GGG + chr7_3:58197612-58197631 Msa1112230:three_prime_UTR 40.0%
! GAAGTTTTCACCAAAAACCG+TGG + chr7_3:58197657-58197676 Msa1112230:three_prime_UTR 40.0%
! AAAATCAAGGCCACGGTTTT+TGG - chr7_3:58197670-58197689 None:intergenic 40.0%
TAGATGCAAACTCACTTCAG+AGG - chr7_3:58197721-58197740 None:intergenic 40.0%
! GCTATATGTATCGGTGAGAG+TGG - chr7_3:58193682-58193701 None:intergenic 45.0%
AGAAGTGGTGAAGCTTCTGT+TGG - chr7_3:58193756-58193775 None:intergenic 45.0%
CATACAAGGGTCATCAGCAT+TGG - chr7_3:58194083-58194102 None:intergenic 45.0%
CAATGCTGATGACCCTTGTA+TGG + chr7_3:58194081-58194100 Msa1112230:intron 45.0%
TCGCGAATCGGTGAAAATAG+GGG - chr7_3:58194351-58194370 None:intergenic 45.0%
GGATCTATTACCTCGAAGAG+TGG + chr7_3:58194446-58194465 Msa1112230:CDS 45.0%
!! GGAATTTCTGGTGTGCATCA+CGG + chr7_3:58194468-58194487 Msa1112230:CDS 45.0%
ATTACGATAAGCCAGCGCTT+AGG - chr7_3:58194732-58194751 None:intergenic 45.0%
AATCACACAGCACATGCATC+AGG - chr7_3:58194882-58194901 None:intergenic 45.0%
AACTGGAACAGTGCAACAGT+TGG + chr7_3:58195154-58195173 Msa1112230:CDS 45.0%
GGTATATGGGCAGACAAACT+TGG + chr7_3:58195341-58195360 Msa1112230:CDS 45.0%
ATATGGGCAGACAAACTTGG+TGG + chr7_3:58195344-58195363 Msa1112230:CDS 45.0%
TATGGGCAGACAAACTTGGT+GGG + chr7_3:58195345-58195364 Msa1112230:CDS 45.0%
TGGAGTTGTATGGTGGTCAA+TGG + chr7_3:58195385-58195404 Msa1112230:CDS 45.0%
AGCCCAATTCTTGCAGCAAT+AGG - chr7_3:58195425-58195444 None:intergenic 45.0%
ATGCGTGCCTTTATGGGAAT+CGG + chr7_3:58195461-58195480 Msa1112230:CDS 45.0%
!! AACCTCACCGATTCCCATAA+AGG - chr7_3:58195471-58195490 None:intergenic 45.0%
TTTATGGGAATCGGTGAGGT+TGG + chr7_3:58195470-58195489 Msa1112230:intron 45.0%
! GTCCAAGTGGATTCCAGTTT+CGG + chr7_3:58195947-58195966 Msa1112230:CDS 45.0%
!! ATGTACCTTGGTTCTGTGGT+AGG + chr7_3:58196005-58196024 Msa1112230:CDS 45.0%
!! TTGGATCCCTTGGAAGTATC+TGG + chr7_3:58196087-58196106 Msa1112230:CDS 45.0%
GGCAAACCAGATACTTCCAA+GGG - chr7_3:58196096-58196115 None:intergenic 45.0%
AGGCAAACCAGATACTTCCA+AGG - chr7_3:58196097-58196116 None:intergenic 45.0%
CGTATCGAAAACACCTGTCT+CGG + chr7_3:58196340-58196359 Msa1112230:CDS 45.0%
ATAAGAGCCCAGATTCAGTG+AGG - chr7_3:58196585-58196604 None:intergenic 45.0%
GGCTCTTATGTGTTCTTCCA+TGG + chr7_3:58196596-58196615 Msa1112230:CDS 45.0%
GCCGTGTTTGCAAATATTGG+AGG + chr7_3:58196628-58196647 Msa1112230:CDS 45.0%
GGCAGATCATGCAATCAATC+GGG + chr7_3:58196856-58196875 Msa1112230:intron 45.0%
TCAATTTCAGGGCGTATTGC+TGG + chr7_3:58197305-58197324 Msa1112230:CDS 45.0%
CAATTTCAGGGCGTATTGCT+GGG + chr7_3:58197306-58197325 Msa1112230:CDS 45.0%
!!! AATTTTCAAATAAAAAAATT+TGG + chr7_3:58193868-58193887 Msa1112230:intron 5.0%
!!! ATAATTTTTTTTTTTTTACA+GGG + chr7_3:58197078-58197097 Msa1112230:intron 5.0%
CCAGAAATTCCCACTCTTCG+AGG - chr7_3:58194459-58194478 None:intergenic 50.0%
CCTCGAAGAGTGGGAATTTC+TGG + chr7_3:58194456-58194475 Msa1112230:CDS 50.0%
!! ATTTCTGGTGTGCATCACGG+TGG + chr7_3:58194471-58194490 Msa1112230:CDS 50.0%
GATCCTGTGGCATCTGATGA+AGG + chr7_3:58194642-58194661 Msa1112230:CDS 50.0%
GTTCCTTCATCAGATGCCAC+AGG - chr7_3:58194648-58194667 None:intergenic 50.0%
GTGGCATCTGATGAAGGAAC+AGG + chr7_3:58194648-58194667 Msa1112230:CDS 50.0%
ATTGGAAGGAAACGGTTCGC+CGG + chr7_3:58194683-58194702 Msa1112230:CDS 50.0%
CTGGGGCTATCTACTTACTC+AGG + chr7_3:58195198-58195217 Msa1112230:CDS 50.0%
TGCCTTTATGGGAATCGGTG+AGG + chr7_3:58195466-58195485 Msa1112230:CDS 50.0%
CTCCGAAACTGGAATCCACT+TGG - chr7_3:58195952-58195971 None:intergenic 50.0%
GATCTGCTTCTCTCCGAAAC+TGG - chr7_3:58195963-58195982 None:intergenic 50.0%
!! TGGCATGTACCTTGGTTCTG+TGG + chr7_3:58196001-58196020 Msa1112230:CDS 50.0%
AAAACACTGATGGCCACCCA+AGG - chr7_3:58196061-58196080 None:intergenic 50.0%
GGTGAGCTATATGCCTGGAA+AGG - chr7_3:58196266-58196285 None:intergenic 50.0%
CCTTTGGTGAGCTATATGCC+TGG - chr7_3:58196271-58196290 None:intergenic 50.0%
CCAGGCATATAGCTCACCAA+AGG + chr7_3:58196268-58196287 Msa1112230:intron 50.0%
TAGCTCACCAAAGGATGACC+CGG + chr7_3:58196277-58196296 Msa1112230:CDS 50.0%
! TTTTCCTCTACCCCGAGATC+CGG - chr7_3:58196299-58196318 None:intergenic 50.0%
! TTTTCGATACGCCGCCTTCA+AGG - chr7_3:58196331-58196350 None:intergenic 50.0%
TTCCAAGGAATGTCCGAGAC+AGG - chr7_3:58196356-58196375 None:intergenic 50.0%
AACACGGCCATGGTTAACCA+TGG - chr7_3:58196616-58196635 None:intergenic 50.0%
GCCGACACGTTAGTTAGCAA+AGG + chr7_3:58196658-58196677 Msa1112230:CDS 50.0%
ATGCACAATACTGCCATGGC+GGG - chr7_3:58196930-58196949 None:intergenic 50.0%
CATGCACAATACTGCCATGG+CGG - chr7_3:58196931-58196950 None:intergenic 50.0%
TGCCATGCACAATACTGCCA+TGG - chr7_3:58196934-58196953 None:intergenic 50.0%
ATTGTGCATGGCATGCAGTC+AGG + chr7_3:58196941-58196960 Msa1112230:CDS 50.0%
CTGGGACTATCGAATACAGC+AGG + chr7_3:58197324-58197343 Msa1112230:CDS 50.0%
AATACAGCAGGTGTGCTTGC+TGG + chr7_3:58197336-58197355 Msa1112230:CDS 50.0%
TGCTGCCACCAAGGAGATAC+CGG - chr7_3:58194705-58194724 None:intergenic 55.0%
TTAGGAAGCTGCTGCCACCA+AGG - chr7_3:58194714-58194733 None:intergenic 55.0%
! GGCAGACAAACTTGGTGGGA+AGG + chr7_3:58195349-58195368 Msa1112230:CDS 55.0%
GGGAAGGTCGTGCTAGGATT+TGG + chr7_3:58195365-58195384 Msa1112230:CDS 55.0%
CCAAGCCTACCACAGAACCA+AGG - chr7_3:58196013-58196032 None:intergenic 55.0%
!! CCTTGGTTCTGTGGTAGGCT+TGG + chr7_3:58196010-58196029 Msa1112230:CDS 55.0%
! CTGATGGCCACCCAAGGTTT+TGG - chr7_3:58196055-58196074 None:intergenic 55.0%
CCAAAGGATGACCCGGATCT+CGG + chr7_3:58196284-58196303 Msa1112230:CDS 55.0%
CAAAGGATGACCCGGATCTC+GGG + chr7_3:58196285-58196304 Msa1112230:CDS 55.0%
AAAGGATGACCCGGATCTCG+GGG + chr7_3:58196286-58196305 Msa1112230:CDS 55.0%
TTTCCTCTACCCCGAGATCC+GGG - chr7_3:58196298-58196317 None:intergenic 55.0%
CACCTGTCTCGGACATTCCT+TGG + chr7_3:58196351-58196370 Msa1112230:CDS 55.0%
!!! CCATGGCGGGTGTTTTGACA+TGG - chr7_3:58196917-58196936 None:intergenic 55.0%
CCATGTCAAAACACCCGCCA+TGG + chr7_3:58196914-58196933 Msa1112230:CDS 55.0%
CGCCATGGCAGTATTGTGCA+TGG + chr7_3:58196929-58196948 Msa1112230:CDS 55.0%
TCGGATGCCTTCTCACAGTC+TGG + chr7_3:58197102-58197121 Msa1112230:CDS 55.0%
GTCTTTGGCACAGCTGCAAC+TGG + chr7_3:58197360-58197379 Msa1112230:CDS 55.0%
ACGGTTCGCCGGTATCTCCT+TGG + chr7_3:58194694-58194713 Msa1112230:CDS 60.0%
GTTCGCCGGTATCTCCTTGG+TGG + chr7_3:58194697-58194716 Msa1112230:CDS 60.0%
CTTGGTGGGAAGGTCGTGCT+AGG + chr7_3:58195359-58195378 Msa1112230:CDS 60.0%
CCGAGATCCGGGTCATCCTT+TGG - chr7_3:58196287-58196306 None:intergenic 60.0%
! GGTGTGCTTGCTGGCGTCTT+TGG + chr7_3:58197345-58197364 Msa1112230:CDS 60.0%
GGCAGCAGCTTCCTAAGCGC+TGG + chr7_3:58194718-58194737 Msa1112230:CDS 65.0%
TGACCCGGATCTCGGGGTAG+AGG + chr7_3:58196292-58196311 Msa1112230:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 58193489 58197974 58193489 ID=Msa1112230;Name=Msa1112230
chr7_3 mRNA 58193489 58197974 58193489 ID=Msa1112230-mRNA-1;Parent=Msa1112230;Name=Msa1112230-mRNA-1;_AED=0.30;_eAED=0.30;_QI=242|0.8|0.81|1|1|1|11|386|527
chr7_3 exon 58193489 58193788 58193489 ID=Msa1112230-mRNA-1:exon:12699;Parent=Msa1112230-mRNA-1
chr7_3 exon 58194424 58194746 58194424 ID=Msa1112230-mRNA-1:exon:12700;Parent=Msa1112230-mRNA-1
chr7_3 exon 58195112 58195219 58195112 ID=Msa1112230-mRNA-1:exon:12701;Parent=Msa1112230-mRNA-1
chr7_3 exon 58195332 58195487 58195332 ID=Msa1112230-mRNA-1:exon:12702;Parent=Msa1112230-mRNA-1
chr7_3 exon 58195915 58196130 58195915 ID=Msa1112230-mRNA-1:exon:12703;Parent=Msa1112230-mRNA-1
chr7_3 exon 58196272 58196481 58196272 ID=Msa1112230-mRNA-1:exon:12704;Parent=Msa1112230-mRNA-1
chr7_3 exon 58196568 58196705 58196568 ID=Msa1112230-mRNA-1:exon:12705;Parent=Msa1112230-mRNA-1
chr7_3 exon 58196861 58196962 58196861 ID=Msa1112230-mRNA-1:exon:12706;Parent=Msa1112230-mRNA-1
chr7_3 exon 58197099 58197164 58197099 ID=Msa1112230-mRNA-1:exon:12707;Parent=Msa1112230-mRNA-1
chr7_3 exon 58197291 58197399 58197291 ID=Msa1112230-mRNA-1:exon:12708;Parent=Msa1112230-mRNA-1
chr7_3 exon 58197491 58197974 58197491 ID=Msa1112230-mRNA-1:exon:12709;Parent=Msa1112230-mRNA-1
chr7_3 five_prime_UTR 58193489 58193730 58193489 ID=Msa1112230-mRNA-1:five_prime_utr;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58193731 58193788 58193731 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58194424 58194746 58194424 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58195112 58195219 58195112 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58195332 58195487 58195332 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58195915 58196130 58195915 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58196272 58196481 58196272 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58196568 58196705 58196568 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58196861 58196962 58196861 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58197099 58197164 58197099 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58197291 58197399 58197291 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 CDS 58197491 58197588 58197491 ID=Msa1112230-mRNA-1:cds;Parent=Msa1112230-mRNA-1
chr7_3 three_prime_UTR 58197589 58197974 58197589 ID=Msa1112230-mRNA-1:three_prime_utr;Parent=Msa1112230-mRNA-1
Gene Sequence

>Msa1112230

ATGGCTATAAGTGGTTTAATTTCCAACAGAAGCTTCACCACTTCTTTCATTGCTTCAGGAAATGTATATCAATTGAGAAAGGATCTATTACCTCGAAGAGTGGGAATTTCTGGTGTGCATCACGGTGGCCAGATTGCAAATAACCCTTTGGCAAGAAGCATAATCCATATTGAACAAAGAGACGTATATGGATTAGGAATAAGAAAGCTTAGTAAGATAAATAGAGTATGTGTTCATTACAGTTCAGAAGAATATGACATTGATGAAACGAAGATAGATCCTGTGGCATCTGATGAAGGAACAGGTGAAGCAATTCTATTGGAAGGAAACGGTTCGCCGGTATCTCCTTGGTGGCAGCAGCTTCCTAAGCGCTGGCTTATCGTAAATATGAGCATTGCGATACTTCCAATGTCACAAGAGTTTAACTGGAACAGTGCAACAGTTGGCCTAATTCAGTCATCTTTTTTCTGGGGCTATCTACTTACTCAGATTCTTGGTGGTATATGGGCAGACAAACTTGGTGGGAAGGTCGTGCTAGGATTTGGAGTTGTATGGTGGTCAATGGCAACAATTCTAACACCTATTGCTGCAAGAATTGGGCTACCTTGTTTGCTTATTATGCGTGCCTTTATGGGAATCGGTGAGGGTGTAGCCATGCCCGCCATGAATAATATACTGTCCAAGTGGATTCCAGTTTCGGAGAGAAGCAGATCACTTTCGCTAGTATATAGTGGCATGTACCTTGGTTCTGTGGTAGGCTTGGCATTCTCACCTTTTCTTATCCAAAACCTTGGGTGGCCATCAGTGTTTTACTCATTTGGATCCCTTGGAAGTATCTGGTTTGCCTTTTGGTTGAGAAAAGCATATAGCTCACCAAAGGATGACCCGGATCTCGGGGTAGAGGAAAAAAAGCTCATCCTTGAAGGCGGCGTATCGAAAACACCTGTCTCGGACATTCCTTGGAAATTAATTCTATCAAAAGCACCAGTTTGGGCTCTTATAATCTCTCATTTCTGCCACAATTGGGGAACATTTATTCTATTAACATGGATGCCTACTTACTATAATCAGGTTCTGAAGTTCAACCTCACTGAATCTGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCCGTGTTTGCAAATATTGGAGGGTGGATAGCCGACACGTTAGTTAGCAAAGGTGTTTCCATAACAACTGTTCGAAAGATCATGCAATCAATCGGGTTTCTAGGTCCTGCCTTTTTTCTTACGCAACTGAGCCATGTCAAAACACCCGCCATGGCAGTATTGTGCATGGCATGCAGTCAGGGATCGGATGCCTTCTCACAGTCTGGTCTTTATTCCAATCATCAAGACATTGGACCACGCTATGCTAATGCTCACGAGTTTCAATTTCAGGGCGTATTGCTGGGACTATCGAATACAGCAGGTGTGCTTGCTGGCGTCTTTGGCACAGCTGCAACTGGATACATACTTCAAAGAGGTTCTTGGAATGACGTGTTTAAGGTTTCTGTTGCATTATACATAATAGGCACACTGGTATGGAATATATTTTCTACTGGGGAGAAGATTCTTGACTGA

Protein sequence

>Msa1112230

MAISGLISNRSFTTSFIASGNVYQLRKDLLPRRVGISGVHHGGQIANNPLARSIIHIEQRDVYGLGIRKLSKINRVCVHYSSEEYDIDETKIDPVASDEGTGEAILLEGNGSPVSPWWQQLPKRWLIVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKVVLGFGVVWWSMATILTPIAARIGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLSLVYSGMYLGSVVGLAFSPFLIQNLGWPSVFYSFGSLGSIWFAFWLRKAYSSPKDDPDLGVEEKKLILEGGVSKTPVSDIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSKGVSITTVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYANAHEFQFQGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVALYIIGTLVWNIFSTGEKILD*