AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040030 MtrunA17_Chr7g0271591 91.005 378 4 1 1 348 1 378 0.0 686
Msa1040030 MtrunA17_Chr1g0185571 32.635 334 181 8 45 341 66 392 3.93e-44 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040030 AT1G09340.1 78.723 376 50 1 1 346 1 376 0.0 583
Msa1040030 AT1G09340.2 80.233 344 38 1 33 346 34 377 0.0 556
Msa1040030 AT3G63140.1 32.628 331 177 8 49 341 75 397 3.19e-45 159

Find 93 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATCAAAGGATGTTAAT+TGG 0.201636 7_1:+77341495 Msa1040030:CDS
TTTCCCTTGTGCCTGCTCTT+AGG 0.208932 7_1:-77341452 None:intergenic
TCAACAGATGATATAATTCT+TGG 0.237761 7_1:+77342826 Msa1040030:CDS
ATAAGGCCAGTTTATATCTA+TGG 0.260089 7_1:+77341524 Msa1040030:CDS
GACAAATATGTCACATTTGA+TGG 0.302971 7_1:+77342153 Msa1040030:CDS
TTCCCTTGTGCCTGCTCTTA+GGG 0.306111 7_1:-77341451 None:intergenic
GATGTTGTTTATGACATTAA+TGG 0.315079 7_1:+77340757 Msa1040030:CDS
CACCAAGAAAATCCTCATAA+TGG 0.331776 7_1:+77340332 Msa1040030:CDS
ATTGGATGCTCTGCCTAATC+TGG 0.333691 7_1:+77340941 Msa1040030:CDS
GCCACCAATCTTGCCATGTT+TGG 0.337037 7_1:-77339870 None:intergenic
AAAAGTTGTGAAATGTTCAT+TGG 0.344253 7_1:+77342960 Msa1040030:three_prime_UTR
ATGTTAATTGGACTTCTATA+AGG 0.345137 7_1:+77341507 Msa1040030:CDS
GAGACAATTAAAGAACCTTT+TGG 0.354322 7_1:-77340300 None:intergenic
TATATCATCTGTTGAGAAAT+CGG 0.357749 7_1:-77342818 None:intergenic
ATTAGGCAGAGCATCCAATA+TGG 0.360176 7_1:-77340937 None:intergenic
CTTGGGTTAGAACCTGACTA+TGG 0.370130 7_1:+77342730 Msa1040030:CDS
CCTGAGCCGGGAATAGGAAT+TGG 0.370539 7_1:-77341605 None:intergenic
TTTATTTACTGCTCTTCTGC+TGG 0.381901 7_1:+77341185 Msa1040030:CDS
AAGACTTCAAACTCAAATTC+AGG 0.384461 7_1:+77339956 Msa1040030:CDS
TCTTCTCTTTCTGATTTCAA+TGG 0.386606 7_1:+77339930 Msa1040030:CDS
ACAGCTTACTGTTCCAGATT+AGG 0.389740 7_1:-77340954 None:intergenic
CCTGACTATGGGCTTGTAGA+AGG 0.391456 7_1:+77342742 Msa1040030:CDS
TGTATTCCTGAGCCGGGAAT+AGG 0.399617 7_1:-77341611 None:intergenic
GATGTTGAATATCTGCTTGC+TGG 0.402494 7_1:-77342124 None:intergenic
AACGGTCCATAGATATAAAC+TGG 0.409144 7_1:-77341530 None:intergenic
TTTGGTTGTGAGGTGTGTAT+AGG 0.411514 7_1:-77339852 None:intergenic
CCTGGCAATTGTTGAGTGAT+AGG 0.412323 7_1:-77340530 None:intergenic
ACCAAGAAAATCCTCATAAT+GGG 0.424978 7_1:+77340333 Msa1040030:CDS
ACAACCAAACATGGCAAGAT+TGG 0.427160 7_1:+77339866 Msa1040030:exon
TCTTATCGCAACATAATAAG+AGG 0.445723 7_1:+77339792 Msa1040030:five_prime_UTR
AACACAACTTGGCCATGTTA+AGG 0.456532 7_1:+77341637 Msa1040030:CDS
TTGAGAAATCGGCCTCTTTG+CGG 0.457734 7_1:-77342807 None:intergenic
TGTTATCTGTATTCCTGAGC+CGG 0.460045 7_1:-77341618 None:intergenic
ATGGGAGGTACTAGATTCAT+TGG 0.465582 7_1:+77340351 Msa1040030:CDS
AGAAAGTTTGTTGCAATCAA+AGG 0.466291 7_1:+77341484 Msa1040030:CDS
AATGAAAGGCTGTGGATTGA+AGG 0.467137 7_1:+77339744 Msa1040030:five_prime_UTR
GAGAAGGCAAAGAGTGTGCT+TGG 0.468611 7_1:+77342712 Msa1040030:CDS
GAAGGTTCTTGGAAATGAAA+AGG 0.475800 7_1:+77342101 Msa1040030:CDS
GATTCGTACAACCTGGACTT+TGG 0.476902 7_1:+77342772 Msa1040030:CDS
CTGAGCCGGGAATAGGAATT+GGG 0.478279 7_1:-77341604 None:intergenic
AGAAGAAGTTGAGCCCATAT+TGG 0.478482 7_1:+77340923 Msa1040030:CDS
AAGCAGATATTCAACATCTC+AGG 0.480050 7_1:+77342129 Msa1040030:CDS
GGCGACCTGCTTTCAATCTG+TGG 0.492808 7_1:-77341583 None:intergenic
TCTAGGCAACTTGTCAAAGA+AGG 0.493271 7_1:+77340384 Msa1040030:CDS
ATCTAGTACCTCCCATTATG+AGG 0.496492 7_1:-77340344 None:intergenic
CCTTCTACAAGCCCATAGTC+AGG 0.501301 7_1:-77342742 None:intergenic
TCATAGATCTTGCATTTGAA+AGG 0.505334 7_1:+77340682 Msa1040030:intron
TCTTGCCATGTTTGGTTGTG+AGG 0.506728 7_1:-77339862 None:intergenic
CCAATTCCTATTCCCGGCTC+AGG 0.512651 7_1:+77341605 Msa1040030:CDS
TCTTGCATTTGAAAGGAGAC+AGG 0.513755 7_1:+77340689 Msa1040030:CDS
TTTCTTTGCATCAGTGGAGA+AGG 0.513847 7_1:+77342696 Msa1040030:CDS
GCAGCATTTCTTTGCATCAG+TGG 0.519599 7_1:+77342690 Msa1040030:intron
GGAAAGATAGTTGACTCTGT+TGG 0.532531 7_1:-77339896 None:intergenic
AGGAGGGAAATGAAAGGCTG+TGG 0.536427 7_1:+77339736 Msa1040030:five_prime_UTR
TATTATGTTGCGATAAGACT+AGG 0.543584 7_1:-77339787 None:intergenic
GTTATCTGTATTCCTGAGCC+GGG 0.543891 7_1:-77341617 None:intergenic
TACAACCTGGACTTTGGTAG+AGG 0.545552 7_1:+77342778 Msa1040030:CDS
ATGAAAGGCTGTGGATTGAA+GGG 0.546104 7_1:+77339745 Msa1040030:five_prime_UTR
ACCAAACATGGCAAGATTGG+TGG 0.546152 7_1:+77339869 Msa1040030:exon
TTAGGCAGAGCATCCAATAT+GGG 0.549553 7_1:-77340936 None:intergenic
CTGTGGATTGAAGGGAATTG+AGG 0.551893 7_1:+77339753 Msa1040030:five_prime_UTR
TTGGGTTAGAACCTGACTAT+GGG 0.553185 7_1:+77342731 Msa1040030:CDS
TCAGAAAGAGAAGAAGCTAA+AGG 0.564522 7_1:-77339921 None:intergenic
AAGTTCCTCTACCAAAGTCC+AGG 0.565993 7_1:-77342783 None:intergenic
TAGGTAACTTTATTTACAAG+AGG 0.566421 7_1:+77340500 Msa1040030:intron
TGGATTGAAGGGAATTGAGG+TGG 0.575121 7_1:+77339756 Msa1040030:five_prime_UTR
ATTGAAGGGAATTGAGGTGG+AGG 0.578640 7_1:+77339759 Msa1040030:five_prime_UTR
ACACACCTCACAACCAAACA+TGG 0.584858 7_1:+77339857 Msa1040030:exon
AAATCTAGTCTCTCAGCAGA+AGG 0.585063 7_1:+77340730 Msa1040030:CDS
AGAAGGCAAAGAGTGTGCTT+GGG 0.585599 7_1:+77342713 Msa1040030:CDS
TCAACAGGGTTGTAATTCAA+CGG 0.586816 7_1:-77341548 None:intergenic
TAGAGGAACTTTCCGCAAAG+AGG 0.588443 7_1:+77342795 Msa1040030:CDS
ATGCAGTTGACCCTAAGAGC+AGG 0.590626 7_1:+77341441 Msa1040030:CDS
CCTATCACTCAACAATTGCC+AGG 0.592614 7_1:+77340530 Msa1040030:CDS
GAAAGAGAAGAAGCTAAAGG+AGG 0.592682 7_1:-77339918 None:intergenic
TGACCCTAAGAGCAGGCACA+AGG 0.597458 7_1:+77341448 Msa1040030:CDS
AAAGAGAAGAAGCTAAAGGA+GGG 0.599842 7_1:-77339917 None:intergenic
AAGTCAGTGTCTGATTCACC+TGG 0.605373 7_1:-77340548 None:intergenic
GGCATACGTTTCAGGACGAG+AGG 0.608829 7_1:+77340899 Msa1040030:intron
ATTACAACCCTGTTGAAGAG+TGG 0.609313 7_1:+77341555 Msa1040030:CDS
ATTAGCAAAAGCATGTGCTA+AGG 0.614920 7_1:+77342176 Msa1040030:CDS
GTGAAATGTTCATTGGATTG+CGG 0.623412 7_1:+77342967 Msa1040030:three_prime_UTR
ACTTGTCAAAGAAGGTCACC+AGG 0.624824 7_1:+77340392 Msa1040030:CDS
GCATTTGAAAGGAGACAGGA+AGG 0.625083 7_1:+77340693 Msa1040030:CDS
ATTAAACTGACCTCGGCGTG+AGG 0.631201 7_1:-77341233 None:intergenic
GGAATACAGATAACACAACT+TGG 0.631393 7_1:+77341626 Msa1040030:CDS
TCTTACAGATTCGTACAACC+TGG 0.632752 7_1:+77342765 Msa1040030:CDS
AAGAAAATCCTCATAATGGG+AGG 0.637190 7_1:+77340336 Msa1040030:CDS
AAAAGAAGGAGGGAAATGAA+AGG 0.652361 7_1:+77339730 None:intergenic
TTCATTACATAAAACTAACA+TGG 0.657935 7_1:+77343030 Msa1040030:three_prime_UTR
ATTACATTCATACCTTAACA+TGG 0.662084 7_1:-77341649 None:intergenic
GACCCTAAGAGCAGGCACAA+GGG 0.675285 7_1:+77341449 Msa1040030:CDS
TGATTTATTACCTCACGCCG+AGG 0.684255 7_1:+77341223 Msa1040030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + chr7_1:77341677-77341696 Msa1040030:intron 0.0%
!!! TTTAATATACTAATTGATTT+TGG + chr7_1:77340250-77340269 Msa1040030:intron 10.0%
!! AAAAATACATTATTTATTTC+CGG - chr7_1:77340449-77340468 None:intergenic 10.0%
!!! AATAAATAATGTATTTTTGA+AGG + chr7_1:77340451-77340470 Msa1040030:intron 10.0%
!! ACATTTAATTATAAACAAAA+TGG - chr7_1:77341148-77341167 None:intergenic 10.0%
!!! TTTTGTTTATAATTAAATGT+TGG + chr7_1:77341148-77341167 Msa1040030:intron 10.0%
!! TAGTAAAACAAAATATAATA+TGG - chr7_1:77341327-77341346 None:intergenic 10.0%
!! AATATAAACAAAACTAATAA+AGG - chr7_1:77341394-77341413 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAACACT+TGG - chr7_1:77342298-77342317 None:intergenic 10.0%
!! TAATTTAACATAACAAATGT+CGG + chr7_1:77340128-77340147 Msa1040030:intron 15.0%
!!! AAATAACTTGTAAATTTGAT+AGG + chr7_1:77340481-77340500 Msa1040030:intron 15.0%
!!! TCAAATTCAATGATTTTATT+TGG + chr7_1:77340878-77340897 Msa1040030:intron 15.0%
!!! TTTTGTTTATATTTTATCTC+TGG + chr7_1:77341401-77341420 Msa1040030:intron 15.0%
!! TTGTAATCATAAATATGATA+TGG - chr7_1:77342215-77342234 None:intergenic 15.0%
!!! TTTTTTTACTAAAGTAGTTT+TGG + chr7_1:77342311-77342330 Msa1040030:intron 15.0%
!! TTTAAAAAAAAATGATGTTC+TGG + chr7_1:77342917-77342936 Msa1040030:three_prime_UTR 15.0%
!! ATCTCAAATCAAATTATTAC+CGG - chr7_1:77340101-77340120 None:intergenic 20.0%
!! ATAATATGAAGAGTAAGAAA+TGG - chr7_1:77340826-77340845 None:intergenic 20.0%
!!! TGACAAGAAAACAAATTTTT+AGG + chr7_1:77341080-77341099 Msa1040030:intron 20.0%
!!! TTGATCACTTTTTTATCAAT+AGG + chr7_1:77341926-77341945 Msa1040030:intron 20.0%
!! AATGAAATTAACATGATAGT+AGG + chr7_1:77342008-77342027 Msa1040030:intron 20.0%
!!! TATGTGATTTTGACTAAAAA+TGG + chr7_1:77342044-77342063 Msa1040030:intron 20.0%
!!! TAAAGTAGTTTTGGTTTATT+TGG + chr7_1:77342320-77342339 Msa1040030:intron 20.0%
!! GTAAAATAGTAAAAACTGAA+AGG - chr7_1:77342894-77342913 None:intergenic 20.0%
!! TTCATTACATAAAACTAACA+TGG + chr7_1:77343030-77343049 Msa1040030:three_prime_UTR 20.0%
! GTGATTATGATGTGTATATA+GGG - chr7_1:77340002-77340021 None:intergenic 25.0%
! AGTGATTATGATGTGTATAT+AGG - chr7_1:77340003-77340022 None:intergenic 25.0%
! TACAGTTGAAAAGAAAAACA+TGG + chr7_1:77340274-77340293 Msa1040030:intron 25.0%
! AGTAATAAATCGTATATACC+TGG - chr7_1:77340413-77340432 None:intergenic 25.0%
!!! TAATGTATTTTTGAAGGTGT+AGG + chr7_1:77340457-77340476 Msa1040030:intron 25.0%
!! TAGGTAACTTTATTTACAAG+AGG + chr7_1:77340500-77340519 Msa1040030:intron 25.0%
!! GATGTTGTTTATGACATTAA+TGG + chr7_1:77340757-77340776 Msa1040030:CDS 25.0%
! ACTATAAATGCAATTGTCAT+TGG + chr7_1:77341017-77341036 Msa1040030:intron 25.0%
! ATGTTAATTGGACTTCTATA+AGG + chr7_1:77341507-77341526 Msa1040030:CDS 25.0%
! ATTACATTCATACCTTAACA+TGG - chr7_1:77341652-77341671 None:intergenic 25.0%
! TAAAGAACTGTAACATCTAA+AGG - chr7_1:77341721-77341740 None:intergenic 25.0%
!! AATTTTGTGATTTGAAGACT+TGG + chr7_1:77341761-77341780 Msa1040030:intron 25.0%
! AAAAATGGTTAAATTGTGAC+AGG + chr7_1:77342059-77342078 Msa1040030:intron 25.0%
! TTTCCAAAATCAAAGTCTTT+CGG - chr7_1:77342394-77342413 None:intergenic 25.0%
!!! GTAGTTTTACTTTTAGTCAT+TGG - chr7_1:77342475-77342494 None:intergenic 25.0%
!!! TATCACACGTGTTTTAATAT+TGG - chr7_1:77342551-77342570 None:intergenic 25.0%
!! TTGATTTTTCTATGTAGTAG+GGG - chr7_1:77342586-77342605 None:intergenic 25.0%
!!! GTTGATTTTTCTATGTAGTA+GGG - chr7_1:77342587-77342606 None:intergenic 25.0%
!!! TGTTGATTTTTCTATGTAGT+AGG - chr7_1:77342588-77342607 None:intergenic 25.0%
! ATGATTTCACTAATGAAAGA+AGG - chr7_1:77342633-77342652 None:intergenic 25.0%
! TATATCATCTGTTGAGAAAT+CGG - chr7_1:77342821-77342840 None:intergenic 25.0%
! TCAACAGATGATATAATTCT+TGG + chr7_1:77342826-77342845 Msa1040030:CDS 25.0%
! AAAAGTTGTGAAATGTTCAT+TGG + chr7_1:77342960-77342979 Msa1040030:three_prime_UTR 25.0%
!! CACGAGAATTATATTTTCTT+TGG + chr7_1:77343001-77343020 Msa1040030:three_prime_UTR 25.0%
TATTATGTTGCGATAAGACT+AGG - chr7_1:77339790-77339809 None:intergenic 30.0%
TCTTATCGCAACATAATAAG+AGG + chr7_1:77339792-77339811 Msa1040030:five_prime_UTR 30.0%
TCTTCTCTTTCTGATTTCAA+TGG + chr7_1:77339930-77339949 Msa1040030:CDS 30.0%
AAGACTTCAAACTCAAATTC+AGG + chr7_1:77339956-77339975 Msa1040030:CDS 30.0%
ATCACTTTCATTTCATGCAT+AGG + chr7_1:77340017-77340036 Msa1040030:intron 30.0%
AGTAATGTTTCTCACATACA+CGG + chr7_1:77340053-77340072 Msa1040030:intron 30.0%
! GAGACAATTAAAGAACCTTT+TGG - chr7_1:77340303-77340322 None:intergenic 30.0%
ACCAAGAAAATCCTCATAAT+GGG + chr7_1:77340333-77340352 Msa1040030:CDS 30.0%
ATTACTCATTTGACTCTAAC+CGG + chr7_1:77340427-77340446 Msa1040030:intron 30.0%
CATTTACAATTAGCATACCT+TGG - chr7_1:77340588-77340607 None:intergenic 30.0%
GTAAATGTAAACATCAAAGC+TGG + chr7_1:77340601-77340620 Msa1040030:intron 30.0%
TCATAGATCTTGCATTTGAA+AGG + chr7_1:77340682-77340701 Msa1040030:intron 30.0%
TATGAAGAGTAAGAAATGGT+TGG - chr7_1:77340822-77340841 None:intergenic 30.0%
!! TTTTATTTGGCATACGTTTC+AGG + chr7_1:77340891-77340910 Msa1040030:intron 30.0%
!! AAATGTTGGTTCTAAATGTC+AGG + chr7_1:77341162-77341181 Msa1040030:intron 30.0%
AGTGTAAATTAAACTGACCT+CGG - chr7_1:77341243-77341262 None:intergenic 30.0%
!! AGAAAGTTTGTTGCAATCAA+AGG + chr7_1:77341484-77341503 Msa1040030:CDS 30.0%
TGCAATCAAAGGATGTTAAT+TGG + chr7_1:77341495-77341514 Msa1040030:CDS 30.0%
ATAAGGCCAGTTTATATCTA+TGG + chr7_1:77341524-77341543 Msa1040030:CDS 30.0%
ATCATATCTCATCCAATGTA+GGG - chr7_1:77341815-77341834 None:intergenic 30.0%
TATCATATCTCATCCAATGT+AGG - chr7_1:77341816-77341835 None:intergenic 30.0%
GACAAATATGTCACATTTGA+TGG + chr7_1:77342153-77342172 Msa1040030:CDS 30.0%
TTGGTTTATTTGGTCATTTC+AGG + chr7_1:77342330-77342349 Msa1040030:intron 30.0%
TTCCAAAATCAAAGTCTTTC+GGG - chr7_1:77342393-77342412 None:intergenic 30.0%
CTACATGAACTAAAAGCAAA+AGG + chr7_1:77342491-77342510 Msa1040030:intron 30.0%
!! AAAAGGTGCTATATTTGCAA+GGG + chr7_1:77342508-77342527 Msa1040030:intron 30.0%
AAAGAGAAGAAGCTAAAGGA+GGG - chr7_1:77339920-77339939 None:intergenic 35.0%
TCAGAAAGAGAAGAAGCTAA+AGG - chr7_1:77339924-77339943 None:intergenic 35.0%
ACTTTCATTTCATGCATAGG+AGG + chr7_1:77340020-77340039 Msa1040030:intron 35.0%
AGAAAAACATGGCAACCAAA+AGG + chr7_1:77340285-77340304 Msa1040030:CDS 35.0%
CACCAAGAAAATCCTCATAA+TGG + chr7_1:77340332-77340351 Msa1040030:CDS 35.0%
! TCCCATTATGAGGATTTTCT+TGG - chr7_1:77340337-77340356 None:intergenic 35.0%
! AAGAAAATCCTCATAATGGG+AGG + chr7_1:77340336-77340355 Msa1040030:CDS 35.0%
!! TCATTGGTGTGTTTTTGTCT+AGG + chr7_1:77340367-77340386 Msa1040030:CDS 35.0%
!!! CTTTGCTGATTTTTCTTCCA+AGG + chr7_1:77340568-77340587 Msa1040030:CDS 35.0%
TTTATTTACTGCTCTTCTGC+TGG + chr7_1:77341185-77341204 Msa1040030:CDS 35.0%
AACGGTCCATAGATATAAAC+TGG - chr7_1:77341533-77341552 None:intergenic 35.0%
TCAACAGGGTTGTAATTCAA+CGG - chr7_1:77341551-77341570 None:intergenic 35.0%
! TTTTTCCACAGATTGAAAGC+AGG + chr7_1:77341578-77341597 Msa1040030:CDS 35.0%
GGAATACAGATAACACAACT+TGG + chr7_1:77341626-77341645 Msa1040030:CDS 35.0%
TACAAAATCAGCAGTATCAG+AGG - chr7_1:77341876-77341895 None:intergenic 35.0%
! GATTTTGTAGCAGTTCACTT+TGG + chr7_1:77341887-77341906 Msa1040030:intron 35.0%
TTTGTAAATGCTTGCCTTCT+AGG + chr7_1:77341952-77341971 Msa1040030:intron 35.0%
ATCTTCAAAAGCAACCTAGA+AGG - chr7_1:77341969-77341988 None:intergenic 35.0%
GGTTAAATTGTGACAGGATT+TGG + chr7_1:77342065-77342084 Msa1040030:intron 35.0%
GAAGGTTCTTGGAAATGAAA+AGG + chr7_1:77342101-77342120 Msa1040030:CDS 35.0%
AAGCAGATATTCAACATCTC+AGG + chr7_1:77342129-77342148 Msa1040030:CDS 35.0%
! ATTAGCAAAAGCATGTGCTA+AGG + chr7_1:77342176-77342195 Msa1040030:CDS 35.0%
TTTATTTGGTCATTTCAGGC+TGG + chr7_1:77342334-77342353 Msa1040030:intron 35.0%
!! AGTGAATGATTTCTGGTTCA+GGG - chr7_1:77342366-77342385 None:intergenic 35.0%
!! TAGTGAATGATTTCTGGTTC+AGG - chr7_1:77342367-77342386 None:intergenic 35.0%
!! AACCCGAAAGACTTTGATTT+TGG + chr7_1:77342388-77342407 Msa1040030:intron 35.0%
!! CAAAAGGTGCTATATTTGCA+AGG + chr7_1:77342507-77342526 Msa1040030:intron 35.0%
GTGAAATGTTCATTGGATTG+CGG + chr7_1:77342967-77342986 Msa1040030:three_prime_UTR 35.0%
! AATGAAAGGCTGTGGATTGA+AGG + chr7_1:77339744-77339763 Msa1040030:five_prime_UTR 40.0%
! ATGAAAGGCTGTGGATTGAA+GGG + chr7_1:77339745-77339764 Msa1040030:five_prime_UTR 40.0%
TTTGGTTGTGAGGTGTGTAT+AGG - chr7_1:77339855-77339874 None:intergenic 40.0%
ACAACCAAACATGGCAAGAT+TGG + chr7_1:77339866-77339885 Msa1040030:exon 40.0%
! GGAAAGATAGTTGACTCTGT+TGG - chr7_1:77339899-77339918 None:intergenic 40.0%
GAAAGAGAAGAAGCTAAAGG+AGG - chr7_1:77339921-77339940 None:intergenic 40.0%
CTATGTAGCATCAACACTTC+AGG - chr7_1:77340156-77340175 None:intergenic 40.0%
ATCTAGTACCTCCCATTATG+AGG - chr7_1:77340347-77340366 None:intergenic 40.0%
!! ATGGGAGGTACTAGATTCAT+TGG + chr7_1:77340351-77340370 Msa1040030:CDS 40.0%
TCTAGGCAACTTGTCAAAGA+AGG + chr7_1:77340384-77340403 Msa1040030:CDS 40.0%
TCTTGCATTTGAAAGGAGAC+AGG + chr7_1:77340689-77340708 Msa1040030:CDS 40.0%
AAATCTAGTCTCTCAGCAGA+AGG + chr7_1:77340730-77340749 Msa1040030:CDS 40.0%
! TGGTTGGTATTCAGTACAGA+AGG - chr7_1:77340806-77340825 None:intergenic 40.0%
AGAAGAAGTTGAGCCCATAT+TGG + chr7_1:77340923-77340942 Msa1040030:CDS 40.0%
! TTAGGCAGAGCATCCAATAT+GGG - chr7_1:77340939-77340958 None:intergenic 40.0%
! ATTAGGCAGAGCATCCAATA+TGG - chr7_1:77340940-77340959 None:intergenic 40.0%
ACAGCTTACTGTTCCAGATT+AGG - chr7_1:77340957-77340976 None:intergenic 40.0%
TGCCATGATGCAATTGTTTG+AGG + chr7_1:77341290-77341309 Msa1040030:intron 40.0%
TGCCTCAAACAATTGCATCA+TGG - chr7_1:77341295-77341314 None:intergenic 40.0%
ATTACAACCCTGTTGAAGAG+TGG + chr7_1:77341555-77341574 Msa1040030:CDS 40.0%
GGAAAAACCACTCTTCAACA+GGG - chr7_1:77341565-77341584 None:intergenic 40.0%
TGGAAAAACCACTCTTCAAC+AGG - chr7_1:77341566-77341585 None:intergenic 40.0%
TGTTATCTGTATTCCTGAGC+CGG - chr7_1:77341621-77341640 None:intergenic 40.0%
AACACAACTTGGCCATGTTA+AGG + chr7_1:77341637-77341656 Msa1040030:CDS 40.0%
! ACAGCTTTTGTGAAGGTTCT+TGG + chr7_1:77342090-77342109 Msa1040030:CDS 40.0%
GATGTTGAATATCTGCTTGC+TGG - chr7_1:77342127-77342146 None:intergenic 40.0%
GGGTTGTAGTGAATGATTTC+TGG - chr7_1:77342373-77342392 None:intergenic 40.0%
TTTCTTTGCATCAGTGGAGA+AGG + chr7_1:77342696-77342715 Msa1040030:CDS 40.0%
! TTGGGTTAGAACCTGACTAT+GGG + chr7_1:77342731-77342750 Msa1040030:CDS 40.0%
TCTTACAGATTCGTACAACC+TGG + chr7_1:77342765-77342784 Msa1040030:CDS 40.0%
! CTGTGGATTGAAGGGAATTG+AGG + chr7_1:77339753-77339772 Msa1040030:five_prime_UTR 45.0%
TGGATTGAAGGGAATTGAGG+TGG + chr7_1:77339756-77339775 Msa1040030:five_prime_UTR 45.0%
ATTGAAGGGAATTGAGGTGG+AGG + chr7_1:77339759-77339778 Msa1040030:five_prime_UTR 45.0%
ACACACCTCACAACCAAACA+TGG + chr7_1:77339857-77339876 Msa1040030:exon 45.0%
TCTTGCCATGTTTGGTTGTG+AGG - chr7_1:77339865-77339884 None:intergenic 45.0%
ACCAAACATGGCAAGATTGG+TGG + chr7_1:77339869-77339888 Msa1040030:exon 45.0%
TTTCTCACATACACGGACAC+CGG + chr7_1:77340060-77340079 Msa1040030:intron 45.0%
!! CCGGTGTTGAGTATTTTGTC+CGG - chr7_1:77340082-77340101 None:intergenic 45.0%
CCGGACAAAATACTCAACAC+CGG + chr7_1:77340079-77340098 Msa1040030:intron 45.0%
ACTTGTCAAAGAAGGTCACC+AGG + chr7_1:77340392-77340411 Msa1040030:CDS 45.0%
CCTGGCAATTGTTGAGTGAT+AGG - chr7_1:77340533-77340552 None:intergenic 45.0%
CCTATCACTCAACAATTGCC+AGG + chr7_1:77340530-77340549 Msa1040030:CDS 45.0%
AAGTCAGTGTCTGATTCACC+TGG - chr7_1:77340551-77340570 None:intergenic 45.0%
GCATTTGAAAGGAGACAGGA+AGG + chr7_1:77340693-77340712 Msa1040030:CDS 45.0%
ATTGGATGCTCTGCCTAATC+TGG + chr7_1:77340941-77340960 Msa1040030:CDS 45.0%
TGATTTATTACCTCACGCCG+AGG + chr7_1:77341223-77341242 Msa1040030:CDS 45.0%
GTTATCTGTATTCCTGAGCC+GGG - chr7_1:77341620-77341639 None:intergenic 45.0%
CATGTTGAGAAGCCCTACAT+TGG + chr7_1:77341800-77341819 Msa1040030:intron 45.0%
! TTTGGCGACAGCTTTTGTGA+AGG + chr7_1:77342083-77342102 Msa1040030:CDS 45.0%
ATTTGGTCATTTCAGGCTGG+TGG + chr7_1:77342337-77342356 Msa1040030:intron 45.0%
TTTGGTCATTTCAGGCTGGT+GGG + chr7_1:77342338-77342357 Msa1040030:intron 45.0%
GTCATTTCCATTTCGCGATC+AGG + chr7_1:77342420-77342439 Msa1040030:intron 45.0%
TACTTCACCTGATCGCGAAA+TGG - chr7_1:77342430-77342449 None:intergenic 45.0%
GCAGCATTTCTTTGCATCAG+TGG + chr7_1:77342690-77342709 Msa1040030:intron 45.0%
! AGAAGGCAAAGAGTGTGCTT+GGG + chr7_1:77342713-77342732 Msa1040030:CDS 45.0%
! CTTGGGTTAGAACCTGACTA+TGG + chr7_1:77342730-77342749 Msa1040030:CDS 45.0%
GATTCGTACAACCTGGACTT+TGG + chr7_1:77342772-77342791 Msa1040030:CDS 45.0%
TACAACCTGGACTTTGGTAG+AGG + chr7_1:77342778-77342797 Msa1040030:CDS 45.0%
AAGTTCCTCTACCAAAGTCC+AGG - chr7_1:77342786-77342805 None:intergenic 45.0%
TAGAGGAACTTTCCGCAAAG+AGG + chr7_1:77342795-77342814 Msa1040030:CDS 45.0%
TTGAGAAATCGGCCTCTTTG+CGG - chr7_1:77342810-77342829 None:intergenic 45.0%
AGGAGGGAAATGAAAGGCTG+TGG + chr7_1:77339736-77339755 Msa1040030:five_prime_UTR 50.0%
GCCACCAATCTTGCCATGTT+TGG - chr7_1:77339873-77339892 None:intergenic 50.0%
ATTAAACTGACCTCGGCGTG+AGG - chr7_1:77341236-77341255 None:intergenic 50.0%
ATGCAGTTGACCCTAAGAGC+AGG + chr7_1:77341441-77341460 Msa1040030:CDS 50.0%
TTCCCTTGTGCCTGCTCTTA+GGG - chr7_1:77341454-77341473 None:intergenic 50.0%
TTTCCCTTGTGCCTGCTCTT+AGG - chr7_1:77341455-77341474 None:intergenic 50.0%
CTGAGCCGGGAATAGGAATT+GGG - chr7_1:77341607-77341626 None:intergenic 50.0%
TGTATTCCTGAGCCGGGAAT+AGG - chr7_1:77341614-77341633 None:intergenic 50.0%
! GAGAAGGCAAAGAGTGTGCT+TGG + chr7_1:77342712-77342731 Msa1040030:CDS 50.0%
CCTTCTACAAGCCCATAGTC+AGG - chr7_1:77342745-77342764 None:intergenic 50.0%
CCTGACTATGGGCTTGTAGA+AGG + chr7_1:77342742-77342761 Msa1040030:CDS 50.0%
GGCATACGTTTCAGGACGAG+AGG + chr7_1:77340899-77340918 Msa1040030:intron 55.0%
TGACCCTAAGAGCAGGCACA+AGG + chr7_1:77341448-77341467 Msa1040030:CDS 55.0%
GACCCTAAGAGCAGGCACAA+GGG + chr7_1:77341449-77341468 Msa1040030:CDS 55.0%
GGCGACCTGCTTTCAATCTG+TGG - chr7_1:77341586-77341605 None:intergenic 55.0%
GGTCGCCCAATTCCTATTCC+CGG + chr7_1:77341599-77341618 Msa1040030:CDS 55.0%
CCTGAGCCGGGAATAGGAAT+TGG - chr7_1:77341608-77341627 None:intergenic 55.0%
CCAATTCCTATTCCCGGCTC+AGG + chr7_1:77341605-77341624 Msa1040030:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77339735 77343068 77339735 ID=Msa1040030;Name=Msa1040030
chr7_1 mRNA 77339735 77343068 77339735 ID=Msa1040030-mRNA-1;Parent=Msa1040030;Name=Msa1040030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=141|0.88|1|1|0.88|0.8|10|167|348
chr7_1 exon 77339735 77339977 77339735 ID=Msa1040030-mRNA-1:exon:20291;Parent=Msa1040030-mRNA-1
chr7_1 exon 77340279 77340413 77340279 ID=Msa1040030-mRNA-1:exon:20292;Parent=Msa1040030-mRNA-1
chr7_1 exon 77340503 77340589 77340503 ID=Msa1040030-mRNA-1:exon:20293;Parent=Msa1040030-mRNA-1
chr7_1 exon 77340688 77340778 77340688 ID=Msa1040030-mRNA-1:exon:20294;Parent=Msa1040030-mRNA-1
chr7_1 exon 77340913 77340967 77340913 ID=Msa1040030-mRNA-1:exon:20295;Parent=Msa1040030-mRNA-1
chr7_1 exon 77341184 77341244 77341184 ID=Msa1040030-mRNA-1:exon:20296;Parent=Msa1040030-mRNA-1
chr7_1 exon 77341437 77341658 77341437 ID=Msa1040030-mRNA-1:exon:20297;Parent=Msa1040030-mRNA-1
chr7_1 exon 77342081 77342197 77342081 ID=Msa1040030-mRNA-1:exon:20298;Parent=Msa1040030-mRNA-1
chr7_1 exon 77342694 77342872 77342694 ID=Msa1040030-mRNA-1:exon:20299;Parent=Msa1040030-mRNA-1
chr7_1 exon 77342904 77343068 77342904 ID=Msa1040030-mRNA-1:exon:20300;Parent=Msa1040030-mRNA-1
chr7_1 five_prime_UTR 77339735 77339875 77339735 ID=Msa1040030-mRNA-1:five_prime_utr;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77339876 77339977 77339876 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77340279 77340413 77340279 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77340503 77340589 77340503 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77340688 77340778 77340688 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77340913 77340967 77340913 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77341184 77341244 77341184 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77341437 77341658 77341437 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77342081 77342197 77342081 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 CDS 77342694 77342870 77342694 ID=Msa1040030-mRNA-1:cds;Parent=Msa1040030-mRNA-1
chr7_1 three_prime_UTR 77342871 77342872 77342871 ID=Msa1040030-mRNA-1:three_prime_utr;Parent=Msa1040030-mRNA-1
chr7_1 three_prime_UTR 77342904 77343068 77342904 ID=Msa1040030-mRNA-1:three_prime_utr;Parent=Msa1040030-mRNA-1
Gene Sequence

>Msa1040030

ATGGCAAGATTGGTGGCACTCCAACAGAGTCAACTATCTTTCCCTCCTTTAGCTTCTTCTCTTTCTGATTTCAATGGAGCAAGACTTCAAACTCAAATTCAGTTGAAAAGAAAAACATGGCAACCAAAAGGTTCTTTAATTGTCTCAGCATCAAGCACCAAGAAAATCCTCATAATGGGAGGTACTAGATTCATTGGTGTGTTTTTGTCTAGGCAACTTGTCAAAGAAGGTCACCAGGTAACTTTATTTACAAGAGGAAAAGCACCTATCACTCAACAATTGCCAGGTGAATCAGACACTGACTTTGCTGATTTTTCTTCCAAGATCTTGCATTTGAAAGGAGACAGGAAGGACTATGATTTTGTAAAATCTAGTCTCTCAGCAGAAGGATTTGATGTTGTTTATGACATTAATGGACGAGAGGCAGAAGAAGTTGAGCCCATATTGGATGCTCTGCCTAATCTGGAACAGTTTATTTACTGCTCTTCTGCTGGTGTCTATCTCAAGTCTGATTTATTACCTCACGCCGAGATTGATGCAGTTGACCCTAAGAGCAGGCACAAGGGAAAGCTTGAAACAGAAAGTTTGTTGCAATCAAAGGATGTTAATTGGACTTCTATAAGGCCAGTTTATATCTATGGACCGTTGAATTACAACCCTGTTGAAGAGTGGTTTTTCCACAGATTGAAAGCAGGTCGCCCAATTCCTATTCCCGGCTCAGGAATACAGATAACACAACTTGGCCATGTTAAGGATTTGGCGACAGCTTTTGTGAAGGTTCTTGGAAATGAAAAGGCCAGCAAGCAGATATTCAACATCTCAGGAGACAAATATGTCACATTTGATGGATTAGCAAAAGCATGTGCTAAGCATTTCTTTGCATCAGTGGAGAAGGCAAAGAGTGTGCTTGGGTTAGAACCTGACTATGGGCTTGTAGAAGGTCTTACAGATTCGTACAACCTGGACTTTGGTAGAGGAACTTTCCGCAAAGAGGCCGATTTCTCAACAGATGATATAATTCTTGGCAAGAGTCTTGTTAGTGTATGA

Protein sequence

>Msa1040030

MARLVALQQSQLSFPPLASSLSDFNGARLQTQIQLKRKTWQPKGSLIVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFVKVLGNEKASKQIFNISGDKYVTFDGLAKACAKHFFASVEKAKSVLGLEPDYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVSV*