AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032770 MtrunA17_Chr7g0255121 97.071 239 7 0 1 239 1 239 8.04e-171 469
Msa1032770 MtrunA17_Chr4g0024851 38.000 150 87 3 87 231 90 238 3.07e-25 99.4
Msa1032770 MtrunA17_Chr7g0252841 34.177 237 139 8 10 231 10 244 6.18e-25 99.0
Msa1032770 MtrunA17_Chr6g0461681 30.705 241 131 6 10 226 9 237 2.78e-24 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032770 AT3G56950.1 63.203 231 83 2 10 239 8 237 1.17e-105 305
Msa1032770 AT3G56950.2 63.203 231 83 2 10 239 8 237 1.64e-105 306
Msa1032770 AT3G04090.1 35.461 141 86 2 87 223 87 226 6.57e-17 77.4
Msa1032770 AT5G18290.2 26.809 235 152 6 12 231 10 239 5.67e-16 75.1
Msa1032770 AT5G18290.1 26.809 235 152 6 12 231 10 239 5.67e-16 75.1

Find 75 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATGGATAAATGATTAT+TGG 0.197885 7_1:-67856114 Msa1032770:three_prime_UTR
TTATTCGTCTTCAAAATTCT+TGG 0.243461 7_1:-67859765 Msa1032770:CDS
CGAAAATAGTTGCCTCTATA+GGG 0.253238 7_1:+67856363 None:intergenic
AGGAACACATCCTTGTTTAC+TGG 0.291486 7_1:-67856391 Msa1032770:CDS
GTTTGAAGCTTGATTCTATC+TGG 0.296934 7_1:-67856243 Msa1032770:three_prime_UTR
GCGAAAATAGTTGCCTCTAT+AGG 0.326073 7_1:+67856362 None:intergenic
TATTGACATGTTCAGGTAAT+GGG 0.328570 7_1:-67856446 Msa1032770:intron
TTCTATCTTTCATGTGGGTA+TGG 0.350086 7_1:-67859806 Msa1032770:CDS
GCAAAGTGTATAGTTCCTTA+TGG 0.353836 7_1:-67856129 Msa1032770:three_prime_UTR
TATTAATCCCATCAGGTGTT+TGG 0.370566 7_1:-67856809 Msa1032770:intron
CAGGTGTTTGGATCTATTGT+TGG 0.377920 7_1:-67856797 Msa1032770:CDS
TTTGAATGTTGACATTCATC+AGG 0.394171 7_1:-67856726 Msa1032770:CDS
GATGGAACGACGAAGTAGTT+TGG 0.401724 7_1:-67859847 Msa1032770:CDS
CCAATAATCATTTATCCATA+AGG 0.406012 7_1:+67856114 None:intergenic
TTGCCAAAGTTTCTCGTGGT+GGG 0.420248 7_1:-67859668 Msa1032770:CDS
AAGAATCTATGTCTATGAAT+AGG 0.430909 7_1:+67859956 None:intergenic
TATGAATAGGTATACTTGAT+TGG 0.442036 7_1:+67859969 None:intergenic
TAACAAGTTCTATGAATTTG+AGG 0.447065 7_1:+67859881 None:intergenic
AAGTGTTAACTTGGAGAGGC+TGG 0.451033 7_1:+67856601 None:intergenic
CTTGTTATCGTCGTTGAAGA+TGG 0.459023 7_1:-67859865 Msa1032770:exon
AAGTTAACACTTCATATACT+TGG 0.461419 7_1:-67856590 Msa1032770:CDS
GACCCCACCACGAGAAACTT+TGG 0.464214 7_1:+67859665 None:intergenic
TTACTGGCTTGCCCCTATAG+AGG 0.464558 7_1:-67856375 Msa1032770:CDS
ACGCGGTCCCTGTCCTACTT+CGG 0.466726 7_1:+67856748 None:intergenic
TGCTTTCAGAATTCCTGCTC+AGG 0.468353 7_1:-67859577 Msa1032770:intron
CTACACTACACAAATAATCA+TGG 0.476687 7_1:+67856216 None:intergenic
CATGATTATTTGTGTAGTGT+AGG 0.486992 7_1:-67856215 Msa1032770:three_prime_UTR
TCTTTACAATCTCGCCGATA+GGG 0.487656 7_1:+67859730 None:intergenic
GTGTGGACAAACAAATTACT+AGG 0.491112 7_1:+67860006 None:intergenic
TACCATTCCCGAAGTAGGAC+AGG 0.491255 7_1:-67856756 Msa1032770:CDS
TTCTGAAAGCAACACAGAAA+AGG 0.497664 7_1:+67859589 None:intergenic
ATTGATACCATTCCCGAAGT+AGG 0.499692 7_1:-67856761 Msa1032770:CDS
AGGTTCAGAATTACCTGAGC+AGG 0.503453 7_1:+67859564 None:intergenic
TCTTTCATGTGGGTATGGTC+TGG 0.513039 7_1:-67859801 Msa1032770:CDS
ACAACAGTACTTACAGCTGC+GGG 0.513240 7_1:+67856539 None:intergenic
CTTGCCAAAGTTTCTCGTGG+TGG 0.513744 7_1:-67859669 Msa1032770:CDS
TGCCAAAGTTTCTCGTGGTG+GGG 0.514080 7_1:-67859667 Msa1032770:CDS
GAAATTTCTTCATGAAGACT+TGG 0.517517 7_1:-67856628 Msa1032770:CDS
AATAGGTATACTTGATTGGT+TGG 0.517683 7_1:+67859973 None:intergenic
TTCCTTGCCAAAGTTTCTCG+TGG 0.539089 7_1:-67859672 Msa1032770:CDS
AAGTATATGAAGTGTTAACT+TGG 0.539530 7_1:+67856592 None:intergenic
TCTGAATTTCATTAGACCAA+AGG 0.540468 7_1:-67856020 None:intergenic
TCCCTGTCCTACTTCGGGAA+TGG 0.542268 7_1:+67856754 None:intergenic
ATCTTTACAATCTCGCCGAT+AGG 0.544528 7_1:+67859729 None:intergenic
ACATGTTCAGGTAATGGGAT+GGG 0.544677 7_1:-67856441 Msa1032770:intron
ATTTGTGTAGTGTAGGTGGT+TGG 0.545170 7_1:-67856208 Msa1032770:three_prime_UTR
AGGTATACTTGATTGGTTGG+TGG 0.554120 7_1:+67859976 None:intergenic
GCAATTGTAAGCATTTCACT+TGG 0.559581 7_1:-67856674 Msa1032770:CDS
ATGGGATGGGCTTATGCTCG+AGG 0.561401 7_1:-67856428 Msa1032770:CDS
TGGGATGGGCTTATGCTCGA+GGG 0.562784 7_1:-67856427 Msa1032770:CDS
CTTTACAATCTCGCCGATAG+GGG 0.572023 7_1:+67859731 None:intergenic
TGCGGGGTTCATACAACCAC+CGG 0.572841 7_1:+67856556 None:intergenic
GATTATTTGTGTAGTGTAGG+TGG 0.573144 7_1:-67856212 Msa1032770:three_prime_UTR
CATCAGGGAGCATTAACAGA+AGG 0.579352 7_1:-67856710 Msa1032770:CDS
TTGTATAAATAATAGACAGA+TGG 0.585348 7_1:+67856054 None:intergenic
CAATTGTAAGCATTTCACTT+GGG 0.591125 7_1:-67856673 Msa1032770:CDS
GACATGTTCAGGTAATGGGA+TGG 0.594916 7_1:-67856442 Msa1032770:intron
AAACAAGAACATGTTGAGGA+TGG 0.600692 7_1:+67859698 None:intergenic
TTGTCTGATGCTATCTCTCG+TGG 0.601098 7_1:-67859624 Msa1032770:CDS
TTGAATGTTGACATTCATCA+GGG 0.603420 7_1:-67856725 Msa1032770:CDS
TAGGGGCAAGCCAGTAAACA+AGG 0.604165 7_1:+67856381 None:intergenic
TATGAAGTGTTAACTTGGAG+AGG 0.604810 7_1:+67856597 None:intergenic
ATACTTGGTTCTGATCTGAC+CGG 0.615126 7_1:-67856575 Msa1032770:CDS
GCATCAGACAAAACAGTGAG+AGG 0.620218 7_1:+67859636 None:intergenic
AAGCAAACAAGAACATGTTG+AGG 0.623346 7_1:+67859694 None:intergenic
TGGTTGGTGGCATTGTCGTG+TGG 0.627325 7_1:+67859989 None:intergenic
GAAAATAGTTGCCTCTATAG+GGG 0.627983 7_1:+67856364 None:intergenic
TACAACAGTACTTACAGCTG+CGG 0.633608 7_1:+67856538 None:intergenic
CACCACGAGAAACTTTGGCA+AGG 0.654727 7_1:+67859670 None:intergenic
ACCATTCCCGAAGTAGGACA+GGG 0.659470 7_1:-67856755 Msa1032770:CDS
CTTGGTTCTGATCTGACCGG+TGG 0.665509 7_1:-67856572 Msa1032770:CDS
GGGATGGGCTTATGCTCGAG+GGG 0.671783 7_1:-67856426 Msa1032770:CDS
TCGAGGGGATCACATAACAA+AGG 0.700357 7_1:-67856411 Msa1032770:CDS
CAACAGTACTTACAGCTGCG+GGG 0.746373 7_1:+67856540 None:intergenic
TGAATGTCAACATTCAAACG+CGG 0.764386 7_1:+67856731 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTGTTTTTTTATTTTTAC+TGG - chr7_1:67856606-67856625 Msa1032770:CDS 15.0%
!!! ATTAAATCTCTTAATAGTTT+TGG - chr7_1:67856748-67856767 Msa1032770:CDS 15.0%
!! AATTAAATAATCCTTGAAAT+GGG - chr7_1:67858009-67858028 Msa1032770:intron 15.0%
!! TTCTTATAAAAAAGACAAGA+AGG + chr7_1:67856542-67856561 None:intergenic 20.0%
!!! TTTATTTTTACTGGTCAAAA+AGG - chr7_1:67856615-67856634 Msa1032770:CDS 20.0%
!! ATTGTATGAAATAAAATTGC+AGG - chr7_1:67857026-67857045 Msa1032770:intron 20.0%
!! AATAAAATTGCAGGAAAATA+AGG - chr7_1:67857035-67857054 Msa1032770:intron 20.0%
!! GTTAAATATCCAAAACTAAT+TGG + chr7_1:67857656-67857675 None:intergenic 20.0%
!!! ATTGATTATCAGATATTTTC+TGG - chr7_1:67857752-67857771 Msa1032770:intron 20.0%
!! GAATTAAATAATCCTTGAAA+TGG - chr7_1:67858008-67858027 Msa1032770:intron 20.0%
!! GTTGTACAAGTTTATTATAA+AGG - chr7_1:67858259-67858278 Msa1032770:intron 20.0%
!! AACTATTTGTAGTGATTTAA+AGG - chr7_1:67858695-67858714 Msa1032770:intron 20.0%
!! TTGTATAAATAATAGACAGA+TGG + chr7_1:67860020-67860039 None:intergenic 20.0%
! TATGAATAGGTATACTTGAT+TGG + chr7_1:67856105-67856124 None:intergenic 25.0%
! AAGAATCTATGTCTATGAAT+AGG + chr7_1:67856118-67856137 None:intergenic 25.0%
! TAACAAGTTCTATGAATTTG+AGG + chr7_1:67856193-67856212 None:intergenic 25.0%
!! ATTTTGTTCTATCTTTCATG+TGG - chr7_1:67856259-67856278 Msa1032770:three_prime_UTR 25.0%
!! TTTTGTTCTATCTTTCATGT+GGG - chr7_1:67856260-67856279 Msa1032770:three_prime_UTR 25.0%
! TTATTCGTCTTCAAAATTCT+TGG - chr7_1:67856306-67856325 Msa1032770:CDS 25.0%
! TCACTTTGATATATATAGCT+TGG - chr7_1:67856674-67856693 Msa1032770:CDS 25.0%
!!! ATCTCTTAATAGTTTTGGAT+TGG - chr7_1:67856753-67856772 Msa1032770:CDS 25.0%
! TATAAATATGAGAAAAGCCA+AGG + chr7_1:67857125-67857144 None:intergenic 25.0%
!! TGGCTTTTCTCATATTTATA+AGG - chr7_1:67857125-67857144 Msa1032770:intron 25.0%
! CATTATGGATAATAGGAATA+TGG + chr7_1:67857152-67857171 None:intergenic 25.0%
! CCAAATATCTCTCAATTTAT+TGG + chr7_1:67857208-67857227 None:intergenic 25.0%
! CCAATAAATTGAGAGATATT+TGG - chr7_1:67857205-67857224 Msa1032770:intron 25.0%
! TATTGTTTGTGGAATATTTG+TGG - chr7_1:67857613-67857632 Msa1032770:intron 25.0%
!! CTACATACTAGATTTTTGAA+AGG - chr7_1:67858050-67858069 Msa1032770:intron 25.0%
!!! CTCAGAATTTGTTAAAAACA+TGG - chr7_1:67858552-67858571 Msa1032770:intron 25.0%
!! ATTTCCATGAATTTTTGTTG+TGG + chr7_1:67859428-67859447 None:intergenic 25.0%
!! AAGTATATGAAGTGTTAACT+TGG + chr7_1:67859482-67859501 None:intergenic 25.0%
! AAGTTAACACTTCATATACT+TGG - chr7_1:67859481-67859500 Msa1032770:intron 25.0%
! AAAGTAACTACAGATAAACT+CGG + chr7_1:67859560-67859579 None:intergenic 25.0%
! CCAATAATCATTTATCCATA+AGG + chr7_1:67859960-67859979 None:intergenic 25.0%
! CCTTATGGATAAATGATTAT+TGG - chr7_1:67859957-67859976 Msa1032770:five_prime_UTR 25.0%
AATAGGTATACTTGATTGGT+TGG + chr7_1:67856101-67856120 None:intergenic 30.0%
!! TTTGAGGATGTTTTTGTGTT+TGG + chr7_1:67856177-67856196 None:intergenic 30.0%
ATATTCCATGCTTATTTCCT+TGG - chr7_1:67857105-67857124 Msa1032770:intron 30.0%
AATGAGTCTTAGAGTTAGAA+GGG + chr7_1:67857176-67857195 None:intergenic 30.0%
TAATGAGTCTTAGAGTTAGA+AGG + chr7_1:67857177-67857196 None:intergenic 30.0%
!! ACTCTAAGACTCATTACAAT+TGG - chr7_1:67857181-67857200 Msa1032770:intron 30.0%
!! AAGTTTTGTACTGCATACTT+TGG - chr7_1:67857253-67857272 Msa1032770:intron 30.0%
AATATCACAAGTCATTGTCT+TGG - chr7_1:67857299-67857318 Msa1032770:intron 30.0%
! TGCTCATTTGTTAATGCAAT+TGG - chr7_1:67857582-67857601 Msa1032770:intron 30.0%
TGGAACATGTATATTGTTTG+TGG - chr7_1:67857602-67857621 Msa1032770:intron 30.0%
!! ACAAGGATACCAATTAGTTT+TGG - chr7_1:67857644-67857663 Msa1032770:intron 30.0%
TGAATTGATCTATCACGAAT+TGG - chr7_1:67857723-67857742 Msa1032770:intron 30.0%
! GATTATCAGATATTTTCTGG+AGG - chr7_1:67857755-67857774 Msa1032770:intron 30.0%
GGAACCAAATACTTTCATTT+GGG + chr7_1:67857937-67857956 None:intergenic 30.0%
AGGAACCAAATACTTTCATT+TGG + chr7_1:67857938-67857957 None:intergenic 30.0%
!! GATTTTTGAAAGGCTGATAT+TGG - chr7_1:67858060-67858079 Msa1032770:intron 30.0%
!!! GTGATTTTAACTCCTAGATT+AGG - chr7_1:67858492-67858511 Msa1032770:intron 30.0%
AAATTCTAGACACCTAATCT+AGG + chr7_1:67858507-67858526 None:intergenic 30.0%
AGAATTTGACTGCCTAATAT+TGG - chr7_1:67858520-67858539 Msa1032770:intron 30.0%
GAGACATAAACACCAATATT+AGG + chr7_1:67858535-67858554 None:intergenic 30.0%
!! TTGCAAGATCTTTTGATTCA+TGG - chr7_1:67858808-67858827 Msa1032770:intron 30.0%
! TCATAATCGAGATGTTACTT+AGG + chr7_1:67858866-67858885 None:intergenic 30.0%
TGGTTGAGATGCATAAAAAA+AGG + chr7_1:67859184-67859203 None:intergenic 30.0%
GATTGTCATTCTAATATGCA+TGG - chr7_1:67859239-67859258 Msa1032770:intron 30.0%
TTTGAATGTTGACATTCATC+AGG - chr7_1:67859345-67859364 Msa1032770:intron 30.0%
TTGAATGTTGACATTCATCA+GGG - chr7_1:67859346-67859365 Msa1032770:intron 30.0%
CAATTGTAAGCATTTCACTT+GGG - chr7_1:67859398-67859417 Msa1032770:intron 30.0%
GAAATTTCTTCATGAAGACT+TGG - chr7_1:67859443-67859462 Msa1032770:intron 30.0%
GAGTTTATCTGTAGTTACTT+TGG - chr7_1:67859559-67859578 Msa1032770:intron 30.0%
TTACTTTGGTATCATAGCTT+TGG - chr7_1:67859573-67859592 Msa1032770:intron 30.0%
AGATCTTTATTGACATGTTC+AGG - chr7_1:67859618-67859637 Msa1032770:CDS 30.0%
TTATTGACATGTTCAGGTAA+TGG - chr7_1:67859624-67859643 Msa1032770:CDS 30.0%
TATTGACATGTTCAGGTAAT+GGG - chr7_1:67859625-67859644 Msa1032770:CDS 30.0%
! TTTTCTGTTCTATAACAGGT+CGG + chr7_1:67859759-67859778 None:intergenic 30.0%
! ACTGTTTTCTGTTCTATAAC+AGG + chr7_1:67859763-67859782 None:intergenic 30.0%
CTACACTACACAAATAATCA+TGG + chr7_1:67859858-67859877 None:intergenic 30.0%
CATGATTATTTGTGTAGTGT+AGG - chr7_1:67859856-67859875 Msa1032770:exon 30.0%
GTGTGGACAAACAAATTACT+AGG + chr7_1:67856068-67856087 None:intergenic 35.0%
TTCTATCTTTCATGTGGGTA+TGG - chr7_1:67856265-67856284 Msa1032770:three_prime_UTR 35.0%
AAACAAGAACATGTTGAGGA+TGG + chr7_1:67856376-67856395 None:intergenic 35.0%
AAGCAAACAAGAACATGTTG+AGG + chr7_1:67856380-67856399 None:intergenic 35.0%
! TTCTGAAAGCAACACAGAAA+AGG + chr7_1:67856485-67856504 None:intergenic 35.0%
AGACAAGAAGGAGAAAAAGA+AGG + chr7_1:67856530-67856549 None:intergenic 35.0%
GTAGTCATACAAAACAGTAC+AGG - chr7_1:67856793-67856812 Msa1032770:CDS 35.0%
CATTTGAGAAGTTGTAAGAG+TGG - chr7_1:67856823-67856842 Msa1032770:intron 35.0%
TCGCAACATTTATCACTTCA+TGG + chr7_1:67856920-67856939 None:intergenic 35.0%
AGTGATAAATGTTGCGAGAT+TGG - chr7_1:67856923-67856942 Msa1032770:intron 35.0%
GGATAGTAAAATGAGAGAAG+AGG - chr7_1:67857056-67857075 Msa1032770:intron 35.0%
GTAAAATGAGAGAAGAGGTT+AGG - chr7_1:67857061-67857080 Msa1032770:intron 35.0%
AAAAGCCAAGGAAATAAGCA+TGG + chr7_1:67857113-67857132 None:intergenic 35.0%
ATGAGTCTTAGAGTTAGAAG+GGG + chr7_1:67857175-67857194 None:intergenic 35.0%
! ATGACTTGTGATATTGAGAC+AGG + chr7_1:67857294-67857313 None:intergenic 35.0%
ATTTCCGAATAGTGCATACA+AGG - chr7_1:67857343-67857362 Msa1032770:intron 35.0%
CTTTCCTTGTATGCACTATT+CGG + chr7_1:67857350-67857369 None:intergenic 35.0%
AATTGGTATCCTTGTAGTCT+AGG + chr7_1:67857639-67857658 None:intergenic 35.0%
!! TGGAGGTATTTATCAAGTTG+AGG - chr7_1:67857772-67857791 Msa1032770:intron 35.0%
TGAGATCTGATAAAAAGAGC+AGG + chr7_1:67857876-67857895 None:intergenic 35.0%
!! CTGTCCCAAATGAAAGTATT+TGG - chr7_1:67857930-67857949 Msa1032770:intron 35.0%
! TGTCTTTGGTGTACATATGT+GGG + chr7_1:67857973-67857992 None:intergenic 35.0%
ATATGTACACCAAAGACAGA+GGG - chr7_1:67857975-67857994 Msa1032770:intron 35.0%
TCGAGTCTTTAACAAAACAC+TGG + chr7_1:67858086-67858105 None:intergenic 35.0%
!!! CATCTTTTAGGATGTAGTAG+AGG + chr7_1:67858158-67858177 None:intergenic 35.0%
TCCTAAAAGATGCACGAAAA+AGG - chr7_1:67858166-67858185 Msa1032770:intron 35.0%
!! TCCTTTTTCGTGCATCTTTT+AGG + chr7_1:67858170-67858189 None:intergenic 35.0%
TGACACAGGATTAATGTCAT+GGG - chr7_1:67858225-67858244 Msa1032770:intron 35.0%
ATGGTACTCGTAAGATCAAT+CGG - chr7_1:67858435-67858454 Msa1032770:intron 35.0%
! GTGTTATGTATTTTCGTCTC+TGG - chr7_1:67858574-67858593 Msa1032770:intron 35.0%
!!! GGTTTTTTCGTTGTTTGTGT+TGG - chr7_1:67858716-67858735 Msa1032770:intron 35.0%
! ATGTTACTTAGGATTGGGAA+GGG + chr7_1:67858855-67858874 None:intergenic 35.0%
! TCGAGATGTTACTTAGGATT+GGG + chr7_1:67858860-67858879 None:intergenic 35.0%
! ATCGAGATGTTACTTAGGAT+TGG + chr7_1:67858861-67858880 None:intergenic 35.0%
GATTATGACTACCAGTGTTA+GGG - chr7_1:67858878-67858897 Msa1032770:intron 35.0%
ATTATGACTACCAGTGTTAG+GGG - chr7_1:67858879-67858898 Msa1032770:intron 35.0%
CTTGAAGCTTCAACTATTCT+TGG - chr7_1:67859017-67859036 Msa1032770:intron 35.0%
ATAGAATCACAGCAATGCTT+AGG - chr7_1:67859061-67859080 Msa1032770:intron 35.0%
AACAAAACATTATGCATCCC+TGG + chr7_1:67859135-67859154 None:intergenic 35.0%
TATTAATCCCATCAGGTGTT+TGG - chr7_1:67859262-67859281 Msa1032770:intron 35.0%
AATAGATCCAAACACCTGAT+GGG + chr7_1:67859272-67859291 None:intergenic 35.0%
TGAATGTCAACATTCAAACG+CGG + chr7_1:67859343-67859362 None:intergenic 35.0%
GCAATTGTAAGCATTTCACT+TGG - chr7_1:67859397-67859416 Msa1032770:intron 35.0%
CTTGCCACAACAAAAATTCA+TGG - chr7_1:67859421-67859440 Msa1032770:intron 35.0%
! TATGAAGTGTTAACTTGGAG+AGG + chr7_1:67859477-67859496 None:intergenic 35.0%
GAAAATAGTTGCCTCTATAG+GGG + chr7_1:67859710-67859729 None:intergenic 35.0%
CGAAAATAGTTGCCTCTATA+GGG + chr7_1:67859711-67859730 None:intergenic 35.0%
! GTTTGAAGCTTGATTCTATC+TGG - chr7_1:67859828-67859847 Msa1032770:CDS 35.0%
GATTATTTGTGTAGTGTAGG+TGG - chr7_1:67859859-67859878 Msa1032770:exon 35.0%
GCAAAGTGTATAGTTCCTTA+TGG - chr7_1:67859942-67859961 Msa1032770:five_prime_UTR 35.0%
! AGGTATACTTGATTGGTTGG+TGG + chr7_1:67856098-67856117 None:intergenic 40.0%
! CTTGTTATCGTCGTTGAAGA+TGG - chr7_1:67856206-67856225 Msa1032770:three_prime_UTR 40.0%
! GGATTTTCTCATACCCCTAT+CGG - chr7_1:67856327-67856346 Msa1032770:CDS 40.0%
TCTTTACAATCTCGCCGATA+GGG + chr7_1:67856344-67856363 None:intergenic 40.0%
ATCTTTACAATCTCGCCGAT+AGG + chr7_1:67856345-67856364 None:intergenic 40.0%
TTGAAGCAATATACTCCCTC+AGG + chr7_1:67856642-67856661 None:intergenic 40.0%
TGATAGAGTCTCGTCTTAGA+TGG - chr7_1:67856864-67856883 Msa1032770:intron 40.0%
!! GAAGGGGCATTATGGATAAT+AGG + chr7_1:67857159-67857178 None:intergenic 40.0%
!! TAGAGTTAGAAGGGGCATTA+TGG + chr7_1:67857167-67857186 None:intergenic 40.0%
ATCACAAGTCATTGTCTTGG+AGG - chr7_1:67857302-67857321 Msa1032770:intron 40.0%
ACAATCACACAGTCATGTTC+AGG - chr7_1:67857505-67857524 Msa1032770:intron 40.0%
CAATCACACAGTCATGTTCA+GGG - chr7_1:67857506-67857525 Msa1032770:intron 40.0%
ACAAATGAGCAGACATGCAA+GGG + chr7_1:67857573-67857592 None:intergenic 40.0%
AACAAATGAGCAGACATGCA+AGG + chr7_1:67857574-67857593 None:intergenic 40.0%
TATTTGTGGCCTAGACTACA+AGG - chr7_1:67857627-67857646 Msa1032770:intron 40.0%
! CACATGTACTGCGATTTTTG+TGG + chr7_1:67857705-67857724 None:intergenic 40.0%
CACTTACCAATCAACCTGTT+AGG - chr7_1:67857894-67857913 Msa1032770:intron 40.0%
!! ATGTAGCCTAACAGGTTGAT+TGG + chr7_1:67857903-67857922 None:intergenic 40.0%
GAATCACAATGTAGCCTAAC+AGG + chr7_1:67857911-67857930 None:intergenic 40.0%
! CTGTCTTTGGTGTACATATG+TGG + chr7_1:67857974-67857993 None:intergenic 40.0%
CATATGTACACCAAAGACAG+AGG - chr7_1:67857974-67857993 Msa1032770:intron 40.0%
GTGACACAGGATTAATGTCA+TGG - chr7_1:67858224-67858243 Msa1032770:intron 40.0%
CCTCAAATATCGCAAGATCA+CGG + chr7_1:67858351-67858370 None:intergenic 40.0%
TTGCAATTGTGCCTGTGATT+GGG + chr7_1:67858385-67858404 None:intergenic 40.0%
ATTGCAATTGTGCCTGTGAT+TGG + chr7_1:67858386-67858405 None:intergenic 40.0%
! TGCTTGTGATTGATGATCCA+TGG - chr7_1:67858416-67858435 Msa1032770:intron 40.0%
GATTGATCTTACGAGTACCA+TGG + chr7_1:67858436-67858455 None:intergenic 40.0%
! AATCGGATTGACGAGTGTTT+TGG - chr7_1:67858452-67858471 Msa1032770:intron 40.0%
TTTGGTGGGATTGATGAGAT+TGG - chr7_1:67858470-67858489 Msa1032770:intron 40.0%
! TGTTACTTAGGATTGGGAAG+GGG + chr7_1:67858854-67858873 None:intergenic 40.0%
! GATGTTACTTAGGATTGGGA+AGG + chr7_1:67858856-67858875 None:intergenic 40.0%
CGATTATGACTACCAGTGTT+AGG - chr7_1:67858877-67858896 Msa1032770:intron 40.0%
TAGATTTGAACCCCTAACAC+TGG + chr7_1:67858892-67858911 None:intergenic 40.0%
TAAAATATCCAGCCATGCCA+AGG + chr7_1:67858978-67858997 None:intergenic 40.0%
AGCTTCAACTATTCTTGGTC+TGG - chr7_1:67859022-67859041 Msa1032770:intron 40.0%
!! ACATATACACTGGTGCTATG+GGG + chr7_1:67859096-67859115 None:intergenic 40.0%
!! CACATATACACTGGTGCTAT+GGG + chr7_1:67859097-67859116 None:intergenic 40.0%
GTTCGAGACATTCATGTCAT+TGG + chr7_1:67859204-67859223 None:intergenic 40.0%
TGCATGGTATTAATCCCATC+AGG - chr7_1:67859255-67859274 Msa1032770:intron 40.0%
CAATAGATCCAAACACCTGA+TGG + chr7_1:67859273-67859292 None:intergenic 40.0%
CAGGTGTTTGGATCTATTGT+TGG - chr7_1:67859274-67859293 Msa1032770:intron 40.0%
ATTGATACCATTCCCGAAGT+AGG - chr7_1:67859310-67859329 Msa1032770:intron 40.0%
!! ATACTTGGTTCTGATCTGAC+CGG - chr7_1:67859496-67859515 Msa1032770:intron 40.0%
TACAACAGTACTTACAGCTG+CGG + chr7_1:67859536-67859555 None:intergenic 40.0%
!! ACATGTTCAGGTAATGGGAT+GGG - chr7_1:67859630-67859649 Msa1032770:CDS 40.0%
! AGGAACACATCCTTGTTTAC+TGG - chr7_1:67859680-67859699 Msa1032770:CDS 40.0%
GCGAAAATAGTTGCCTCTAT+AGG + chr7_1:67859712-67859731 None:intergenic 40.0%
ATTTGTGTAGTGTAGGTGGT+TGG - chr7_1:67859863-67859882 Msa1032770:exon 40.0%
GATGGAACGACGAAGTAGTT+TGG - chr7_1:67856224-67856243 Msa1032770:three_prime_UTR 45.0%
TCTTTCATGTGGGTATGGTC+TGG - chr7_1:67856270-67856289 Msa1032770:exon 45.0%
CTTTACAATCTCGCCGATAG+GGG + chr7_1:67856343-67856362 None:intergenic 45.0%
TTCCTTGCCAAAGTTTCTCG+TGG - chr7_1:67856399-67856418 Msa1032770:CDS 45.0%
TTGCCAAAGTTTCTCGTGGT+GGG - chr7_1:67856403-67856422 Msa1032770:CDS 45.0%
GCATCAGACAAAACAGTGAG+AGG + chr7_1:67856438-67856457 None:intergenic 45.0%
TTGTCTGATGCTATCTCTCG+TGG - chr7_1:67856447-67856466 Msa1032770:intron 45.0%
TGCTTTCAGAATTCCTGCTC+AGG - chr7_1:67856494-67856513 Msa1032770:intron 45.0%
AGGTTCAGAATTACCTGAGC+AGG + chr7_1:67856510-67856529 None:intergenic 45.0%
TACTGGTCAAAAAGGACCTG+AGG - chr7_1:67856623-67856642 Msa1032770:CDS 45.0%
ACTGGTCAAAAAGGACCTGA+GGG - chr7_1:67856624-67856643 Msa1032770:CDS 45.0%
GAGTGGATCTAGTTGTACTG+AGG - chr7_1:67856840-67856859 Msa1032770:intron 45.0%
ATCACATGCACCAATCAAGG+TGG + chr7_1:67857804-67857823 None:intergenic 45.0%
ACCTTGATTGGTGCATGTGA+TGG - chr7_1:67857803-67857822 Msa1032770:intron 45.0%
ACCATCACATGCACCAATCA+AGG + chr7_1:67857807-67857826 None:intergenic 45.0%
TTGATTGGTGCATGTGATGG+TGG - chr7_1:67857806-67857825 Msa1032770:intron 45.0%
TGATTGGTGCATGTGATGGT+GGG - chr7_1:67857807-67857826 Msa1032770:intron 45.0%
TATGTGGGACTGTGGACAAA+AGG + chr7_1:67857958-67857977 None:intergenic 45.0%
TACACCAAAGACAGAGGGAA+GGG - chr7_1:67857980-67857999 Msa1032770:intron 45.0%
CAAGCGATTTGCCCATTTCA+AGG + chr7_1:67858023-67858042 None:intergenic 45.0%
CTTGAAATGGGCAAATCGCT+TGG - chr7_1:67858021-67858040 Msa1032770:intron 45.0%
CTGTGTCACATACGATCACA+TGG + chr7_1:67858213-67858232 None:intergenic 45.0%
CATGTGATCGTATGTGACAC+AGG - chr7_1:67858211-67858230 Msa1032770:intron 45.0%
CCGTGATCTTGCGATATTTG+AGG - chr7_1:67858348-67858367 Msa1032770:intron 45.0%
ACTAGCACAATCCCAATCAC+AGG - chr7_1:67858371-67858390 Msa1032770:intron 45.0%
TCACAGGCACAATTGCAATC+TGG - chr7_1:67858387-67858406 Msa1032770:intron 45.0%
AGGCACAATTGCAATCTGGT+AGG - chr7_1:67858391-67858410 Msa1032770:intron 45.0%
!!! GGATTGACGAGTGTTTTGGT+GGG - chr7_1:67858456-67858475 Msa1032770:intron 45.0%
TCTAGTGAAACCCCTATCCT+TGG - chr7_1:67858958-67858977 Msa1032770:intron 45.0%
! CCACATATACACTGGTGCTA+TGG + chr7_1:67859098-67859117 None:intergenic 45.0%
CCATAGCACCAGTGTATATG+TGG - chr7_1:67859095-67859114 Msa1032770:intron 45.0%
TCACATCGCCACATATACAC+TGG + chr7_1:67859106-67859125 None:intergenic 45.0%
TGTATATGTGGCGATGTGAG+AGG - chr7_1:67859107-67859126 Msa1032770:intron 45.0%
!! CATCAGGGAGCATTAACAGA+AGG - chr7_1:67859361-67859380 Msa1032770:intron 45.0%
! AAGTGTTAACTTGGAGAGGC+TGG + chr7_1:67859473-67859492 None:intergenic 45.0%
ACAACAGTACTTACAGCTGC+GGG + chr7_1:67859535-67859554 None:intergenic 45.0%
!! GACATGTTCAGGTAATGGGA+TGG - chr7_1:67859629-67859648 Msa1032770:CDS 45.0%
TCGAGGGGATCACATAACAA+AGG - chr7_1:67859660-67859679 Msa1032770:CDS 45.0%
! AGGCAACTATTTTCGCAGTG+TGG - chr7_1:67859716-67859735 Msa1032770:CDS 45.0%
CACCACGAGAAACTTTGGCA+AGG + chr7_1:67856404-67856423 None:intergenic 50.0%
CTTGCCAAAGTTTCTCGTGG+TGG - chr7_1:67856402-67856421 Msa1032770:CDS 50.0%
TGCCAAAGTTTCTCGTGGTG+GGG - chr7_1:67856404-67856423 Msa1032770:CDS 50.0%
TGCCTAGATACCCAGTTGCT+TGG - chr7_1:67857450-67857469 Msa1032770:intron 50.0%
TGCCAAGCAACTGGGTATCT+AGG + chr7_1:67857455-67857474 None:intergenic 50.0%
GTAGCAGTTGCCAAGCAACT+GGG + chr7_1:67857463-67857482 None:intergenic 50.0%
AGTAGCAGTTGCCAAGCAAC+TGG + chr7_1:67857464-67857483 None:intergenic 50.0%
CACAGTCATGTTCAGGGTCA+CGG - chr7_1:67857512-67857531 Msa1032770:intron 50.0%
ACAGTCATGTTCAGGGTCAC+GGG - chr7_1:67857513-67857532 Msa1032770:intron 50.0%
!! GAGGCATTGTCCACCTTGAT+TGG - chr7_1:67857791-67857810 Msa1032770:intron 50.0%
! GATTGGTGCATGTGATGGTG+GGG - chr7_1:67857808-67857827 Msa1032770:intron 50.0%
GGTGTACATATGTGGGACTG+TGG + chr7_1:67857966-67857985 None:intergenic 50.0%
GTACACCAAAGACAGAGGGA+AGG - chr7_1:67857979-67857998 Msa1032770:intron 50.0%
!! CGGATTGACGAGTGTTTTGG+TGG - chr7_1:67858455-67858474 Msa1032770:intron 50.0%
TGAAACCCCTATCCTTGGCA+TGG - chr7_1:67858963-67858982 Msa1032770:intron 50.0%
ATCCAGCCATGCCAAGGATA+GGG + chr7_1:67858972-67858991 None:intergenic 50.0%
TATCCAGCCATGCCAAGGAT+AGG + chr7_1:67858973-67858992 None:intergenic 50.0%
TTGGTCTGGCATGCATCAAC+AGG - chr7_1:67859036-67859055 Msa1032770:intron 50.0%
TACCATTCCCGAAGTAGGAC+AGG - chr7_1:67859315-67859334 Msa1032770:intron 50.0%
ACCATTCCCGAAGTAGGACA+GGG - chr7_1:67859316-67859335 Msa1032770:intron 50.0%
CAACAGTACTTACAGCTGCG+GGG + chr7_1:67859534-67859553 None:intergenic 50.0%
TAGGGGCAAGCCAGTAAACA+AGG + chr7_1:67859693-67859712 None:intergenic 50.0%
!! TTACTGGCTTGCCCCTATAG+AGG - chr7_1:67859696-67859715 Msa1032770:CDS 50.0%
!! TGGTTGGTGGCATTGTCGTG+TGG + chr7_1:67856085-67856104 None:intergenic 55.0%
GACCCCACCACGAGAAACTT+TGG + chr7_1:67856409-67856428 None:intergenic 55.0%
ACCAAAGACAGAGGGAAGGG+CGG - chr7_1:67857983-67858002 Msa1032770:intron 55.0%
TCCAGCCATGCCAAGGATAG+GGG + chr7_1:67858971-67858990 None:intergenic 55.0%
TGGCGATGTGAGAGGAACCA+GGG - chr7_1:67859115-67859134 Msa1032770:intron 55.0%
TCCCTGTCCTACTTCGGGAA+TGG + chr7_1:67859320-67859339 None:intergenic 55.0%
!! CTTGGTTCTGATCTGACCGG+TGG - chr7_1:67859499-67859518 Msa1032770:intron 55.0%
TGCGGGGTTCATACAACCAC+CGG + chr7_1:67859518-67859537 None:intergenic 55.0%
! ATGGGATGGGCTTATGCTCG+AGG - chr7_1:67859643-67859662 Msa1032770:CDS 55.0%
! TGGGATGGGCTTATGCTCGA+GGG - chr7_1:67859644-67859663 Msa1032770:CDS 55.0%
GCAGACATGCAAGGGCGACT+CGG + chr7_1:67857565-67857584 None:intergenic 60.0%
ACCGCCCTTCCCTCTGTCTT+TGG + chr7_1:67857987-67858006 None:intergenic 60.0%
ACCCCTATCCTTGGCATGGC+TGG - chr7_1:67858967-67858986 Msa1032770:intron 60.0%
GTGGCGATGTGAGAGGAACC+AGG - chr7_1:67859114-67859133 Msa1032770:intron 60.0%
ACGCGGTCCCTGTCCTACTT+CGG + chr7_1:67859326-67859345 None:intergenic 60.0%
! GGGATGGGCTTATGCTCGAG+GGG - chr7_1:67859645-67859664 Msa1032770:CDS 60.0%
CGCGGTCCCTGTCCTACTTC+GGG + chr7_1:67859325-67859344 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67856022 67860071 67856022 ID=Msa1032770;Name=Msa1032770
chr7_1 mRNA 67856022 67860071 67856022 ID=Msa1032770-mRNA-1;Parent=Msa1032770;Name=Msa1032770-mRNA-1;_AED=0.23;_eAED=0.23;_QI=203|1|1|1|1|1|3|267|239
chr7_1 exon 67856022 67856453 67856022 ID=Msa1032770-mRNA-1:exon:15639;Parent=Msa1032770-mRNA-1
chr7_1 exon 67856553 67856816 67856553 ID=Msa1032770-mRNA-1:exon:15638;Parent=Msa1032770-mRNA-1
chr7_1 exon 67859578 67860071 67859578 ID=Msa1032770-mRNA-1:exon:15637;Parent=Msa1032770-mRNA-1
chr7_1 five_prime_UTR 67859869 67860071 67859869 ID=Msa1032770-mRNA-1:five_prime_utr;Parent=Msa1032770-mRNA-1
chr7_1 CDS 67859578 67859868 67859578 ID=Msa1032770-mRNA-1:cds;Parent=Msa1032770-mRNA-1
chr7_1 CDS 67856553 67856816 67856553 ID=Msa1032770-mRNA-1:cds;Parent=Msa1032770-mRNA-1
chr7_1 CDS 67856289 67856453 67856289 ID=Msa1032770-mRNA-1:cds;Parent=Msa1032770-mRNA-1
chr7_1 three_prime_UTR 67856022 67856288 67856022 ID=Msa1032770-mRNA-1:three_prime_utr;Parent=Msa1032770-mRNA-1
Gene Sequence

>Msa1032770

ATGGAACGACGAAGTAGTTTGGTTTTCGTTTCAGATTTTGTTCTATCTTTCATGTGGGTATGGTCTGGTGTTCTCGTTCGATTATTCGTCTTCAAAATTCTTGGATTTTCTCATACCCCTATCGGCGAGATTGTAAAGATTTTGTTTTCCATCCTCAACATGTTCTTGTTTGCTTTCCTTGCCAAAGTTTCTCGTGGTGGGGTCTACAATCCTCTCACTGTTTTGTCTGATGCTATCTCTCGTGGTCTTCTTAATTTCCTTTTCTGTGTTGCTTTCAGAATTCCTGCTCAGGTGTTTGGATCTATTGTTGGAGTTAAACTTCTTATTGATACCATTCCCGAAGTAGGACAGGGACCGCGTTTGAATGTTGACATTCATCAGGGAGCATTAACAGAAGGATTACTAACATTTGCAATTGTAAGCATTTCACTTGGGCTTGCCACAACAAAAATTCATGGAAATTTCTTCATGAAGACTTGGATTTCCAGCCTCTCCAAGTTAACACTTCATATACTTGGTTCTGATCTGACCGGTGGTTGTATGAACCCCGCAGCTGTAATGGGATGGGCTTATGCTCGAGGGGATCACATAACAAAGGAACACATCCTTGTTTACTGGCTTGCCCCTATAGAGGCAACTATTTTCGCAGTGTGGACATTCAAATTTATTGTCCGACCTGTTATAGAACAGAAAACAGTCTCAAAAAGTAAATCAGATTGA

Protein sequence

>Msa1032770

MERRSSLVFVSDFVLSFMWVWSGVLVRLFVFKILGFSHTPIGEIVKILFSILNMFLFAFLAKVSRGGVYNPLTVLSDAISRGLLNFLFCVAFRIPAQVFGSIVGVKLLIDTIPEVGQGPRLNVDIHQGALTEGLLTFAIVSISLGLATTKIHGNFFMKTWISSLSKLTLHILGSDLTGGCMNPAAVMGWAYARGDHITKEHILVYWLAPIEATIFAVWTFKFIVRPVIEQKTVSKSKSD*