AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0294060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294060 MtrunA17_Chr2g0315481 97.154 527 15 0 1 527 1 527 0.0 1036
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294060 AT1G78650.1 45.404 544 242 15 1 525 1 508 8.89e-121 365

Find 136 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTCAATTTCGTGAATT+AGG 0.091135 2_3:-45652017 None:intergenic
AATAGTTGAAATACCGTAAA+TGG 0.128117 2_3:+45657084 Msa0294060:three_prime_UTR
GAGGTTCGTTGGCAAGCTTC+TGG 0.168208 2_3:+45655275 Msa0294060:CDS
TCCTTATTTACACAAATTTC+TGG 0.169560 2_3:-45655892 None:intergenic
CCTTGAATATTGTAACTCTT+TGG 0.208016 2_3:-45656949 None:intergenic
CTGCTTCATGAGCACAATTT+TGG 0.214275 2_3:-45655522 None:intergenic
CTCTGGCACTGCGCAAGGCT+TGG 0.218626 2_3:-45655317 None:intergenic
CCTTCAGAAGTTGTTGAAAA+TGG 0.223428 2_3:+45655499 Msa0294060:intron
GTATCCTTATCATCTTTCTT+TGG 0.258986 2_3:-45656271 None:intergenic
CTGATAACTGATAAATCTTT+TGG 0.274120 2_3:-45655817 None:intergenic
AGAACGAAACGACGGTAAAA+AGG 0.276833 2_3:-45651959 None:intergenic
GATAAAAGTGGCTCTGTTAA+TGG 0.294110 2_3:+45655253 Msa0294060:CDS
TGTTATATGTAGGTTGCTTC+AGG 0.309652 2_3:+45652373 Msa0294060:intron
TCCAGAAATTTGTGTAAATA+AGG 0.325298 2_3:+45655891 Msa0294060:CDS
CTTGAATATTGTAACTCTTT+GGG 0.330931 2_3:-45656948 None:intergenic
GTGAATTAGGGATAGGGTTT+CGG 0.334535 2_3:-45652004 None:intergenic
AGATTCAATTTCGTGAATTA+GGG 0.336212 2_3:-45652016 None:intergenic
TCTGGCACTGCGCAAGGCTT+GGG 0.341878 2_3:-45655316 None:intergenic
TCCCAAGCAATTATCAGCTT+TGG 0.343926 2_3:-45653611 None:intergenic
AGAAATACACAACCCATTTA+CGG 0.347999 2_3:-45657097 None:intergenic
TCTTTAGATGACAGTTTACT+AGG 0.350822 2_3:-45655676 None:intergenic
TACCATGTAAGGCTTGTTAC+TGG 0.354891 2_3:+45652473 Msa0294060:CDS
CAAAGCACAGCTGCATCCTT+TGG 0.355427 2_3:-45653544 None:intergenic
TGAAATTAAGCCATTGGTTA+AGG 0.359015 2_3:+45655759 Msa0294060:CDS
ATCAGCAAGTGCACAAGTAC+TGG 0.359563 2_3:+45655835 Msa0294060:CDS
CTTCAGTAACTGAAGTAGTC+TGG 0.361033 2_3:+45656230 Msa0294060:intron
TATCATCAAATGAAGCAAAA+AGG 0.364120 2_3:+45652231 Msa0294060:CDS
TGATGAATTATCCTGCTAGA+AGG 0.368351 2_3:-45656975 None:intergenic
CACTAACCCGTTAACAGCTT+TGG 0.369733 2_3:-45656341 None:intergenic
TGGTGTATGCTTTGTCTGGC+TGG 0.371747 2_3:+45652429 Msa0294060:CDS
GAAAGAATATTGCCCTGTTT+CGG 0.377321 2_3:-45656894 None:intergenic
GCTGGTAGCTTCTTAGTTGC+CGG 0.379978 2_3:-45656816 None:intergenic
AAACATAAAGGATCCGAAAC+AGG 0.382350 2_3:+45656881 Msa0294060:CDS
ACCAATGGCTTAATTTCAAC+CGG 0.383656 2_3:-45655754 None:intergenic
GTTACTGGGACAATGCTTGC+AGG 0.384169 2_3:+45652488 Msa0294060:CDS
AGGTTCGTTGGCAAGCTTCT+GGG 0.384533 2_3:+45655276 Msa0294060:CDS
ATTGTAACTCTTTGGGAAGA+TGG 0.385268 2_3:-45656941 None:intergenic
CAAAGGATGCAGCTGTGCTT+TGG 0.395728 2_3:+45653545 Msa0294060:CDS
TGAACAACATTACTCTTTGT+TGG 0.409982 2_3:-45655040 None:intergenic
TTCCAAAGCTGATAATTGCT+TGG 0.418548 2_3:+45653609 Msa0294060:CDS
GAAGTGGTGTATGCTTTGTC+TGG 0.418622 2_3:+45652425 Msa0294060:CDS
CCTGTTGGATGATCTTCTTA+AGG 0.423040 2_3:-45655584 None:intergenic
TCCAAAGCTGATAATTGCTT+GGG 0.428396 2_3:+45653610 Msa0294060:CDS
AGTAAAATCTGTAGTAGGCT+TGG 0.430762 2_3:+45655015 Msa0294060:CDS
CCAAAGAGTTACAATATTCA+AGG 0.437687 2_3:+45656949 Msa0294060:three_prime_UTR
TCTTCCTCGCTCATCAATCC+TGG 0.444593 2_3:-45655968 None:intergenic
ACATCTACCAAAGCTGTTAA+CGG 0.446705 2_3:+45656334 Msa0294060:CDS
GTAAAATCTGTAGTAGGCTT+GGG 0.450654 2_3:+45655016 Msa0294060:CDS
CAATTTCGTGAATTAGGGAT+AGG 0.451183 2_3:-45652011 None:intergenic
CATCTACCAAAGCTGTTAAC+GGG 0.457690 2_3:+45656335 Msa0294060:CDS
TCGGTGTTCGACATCGGAAT+CGG 0.457812 2_3:-45651985 None:intergenic
ACCGGTTGAAATTAAGCCAT+TGG 0.457997 2_3:+45655753 Msa0294060:CDS
CCAGTAGTATTTGATGTAGC+TGG 0.458491 2_3:-45656834 None:intergenic
TTGTGCTCATGAAGCAGTAC+TGG 0.462284 2_3:+45655528 Msa0294060:CDS
ATAATTGCTTGGGAGACAAT+AGG 0.464445 2_3:+45653620 Msa0294060:CDS
GATCATCCAACAGGAAAAGA+AGG 0.466706 2_3:+45655593 Msa0294060:CDS
CCAGAAGTAAAATCTGTAGT+AGG 0.467548 2_3:+45655010 Msa0294060:CDS
CAAGAAAGCAGGAAACATAA+AGG 0.467823 2_3:+45656869 Msa0294060:CDS
GTATTCCTAGCTACCATGTA+AGG 0.471927 2_3:+45652462 Msa0294060:CDS
AGAGCCAAAGAAAGATGATA+AGG 0.473200 2_3:+45656267 Msa0294060:CDS
CCAGCTACATCAAATACTAC+TGG 0.479108 2_3:+45656834 Msa0294060:CDS
AAGGAACGAGGATGGACAAC+CGG 0.480561 2_3:+45654973 Msa0294060:CDS
AAAATTGGGGATATTTCCCC+AGG 0.482098 2_3:+45651849 Msa0294060:five_prime_UTR
AGTAAAGTCTATAGCAGAAA+GGG 0.483837 2_3:+45657155 Msa0294060:three_prime_UTR
TTTCTCCTCTTAGGTGAACC+TGG 0.487423 2_3:-45655934 None:intergenic
CCATTCCTCCACAATACATT+GGG 0.488791 2_3:+45651892 Msa0294060:five_prime_UTR
CTCTGTTAATGGAGGTTCGT+TGG 0.494085 2_3:+45655264 Msa0294060:CDS
CCTTAAGAAGATCATCCAAC+AGG 0.498177 2_3:+45655584 Msa0294060:CDS
ATCATGTTACTAGTTTCCTC+TGG 0.500456 2_3:-45655334 None:intergenic
ATAGTTGAAATACCGTAAAT+GGG 0.503107 2_3:+45657085 Msa0294060:three_prime_UTR
GAAGCACAGGAAGAGTTTGA+TGG 0.504579 2_3:+45653481 Msa0294060:intron
TGATGATTCTATTTATACCT+GGG 0.506559 2_3:-45651866 None:intergenic
TTCAGTAACTGAAGTAGTCT+GGG 0.507974 2_3:+45656231 Msa0294060:intron
TCTCTCCAGGTTCACCTAAG+AGG 0.514966 2_3:+45655929 Msa0294060:CDS
ATGATGATTCTATTTATACC+TGG 0.515222 2_3:-45651867 None:intergenic
TCCATTCCTCCACAATACAT+TGG 0.517440 2_3:+45651891 Msa0294060:five_prime_UTR
AGCAATGGTACAGGAAATGC+AGG 0.517649 2_3:+45655148 Msa0294060:CDS
AATTTCGTGAATTAGGGATA+GGG 0.523845 2_3:-45652010 None:intergenic
AACATGATTTCAAAACCTGC+AGG 0.524551 2_3:+45655349 Msa0294060:CDS
GTTTCCTCTGGCACTGCGCA+AGG 0.524670 2_3:-45655322 None:intergenic
AGAGGAGGAAGCAAGAAAGC+AGG 0.527546 2_3:+45656858 Msa0294060:CDS
ACTCTTTCTTCCTTAACCAA+TGG 0.531169 2_3:-45655769 None:intergenic
CCCAATGTATTGTGGAGGAA+TGG 0.531774 2_3:-45651892 None:intergenic
ATTGATGAGCGAGGAAGAGA+AGG 0.535714 2_3:+45655973 Msa0294060:CDS
TATTCAGAATACAGATTACA+AGG 0.535754 2_3:-45657065 None:intergenic
GGTTCGTTGGCAAGCTTCTG+GGG 0.540265 2_3:+45655277 Msa0294060:CDS
GGAGAAAAGTGATGAAGACC+AGG 0.540800 2_3:+45655950 Msa0294060:CDS
TTGTTATGTACAATGAATTG+TGG 0.541356 2_3:+45657123 Msa0294060:three_prime_UTR
GACAGTTTACTAGGGACCTC+AGG 0.543644 2_3:-45655667 None:intergenic
ACAAGCCTTACATGGTAGCT+AGG 0.543674 2_3:-45652467 None:intergenic
AGGGTTTCGGTGTTCGACAT+CGG 0.547592 2_3:-45651991 None:intergenic
TCTGGAGTGGCAGAAACTGC+CGG 0.547602 2_3:-45654992 None:intergenic
AATTTCAGGTTTCATACAAG+TGG 0.549313 2_3:+45652189 Msa0294060:intron
AAGAGTGAAAGCAATGGTAC+AGG 0.550651 2_3:+45655139 Msa0294060:CDS
TCATTGCATTTCCAGTGCAC+CGG 0.551186 2_3:+45656797 Msa0294060:intron
ATTCAAGGGACCCTTCTAGC+AGG 0.552164 2_3:+45656964 Msa0294060:three_prime_UTR
TGATCTCAAAACACGGAATG+TGG 0.554950 2_3:+45655105 Msa0294060:CDS
ACATCAAATACTACTGGAAG+AGG 0.555136 2_3:+45656840 Msa0294060:CDS
AAGTCTCTTCCCTTGCCCGC+AGG 0.555927 2_3:+45655211 Msa0294060:CDS
TAACTGAAGTAGTCTGGGAG+GGG 0.560193 2_3:+45656236 Msa0294060:CDS
CGTCTCAGATCAACTTCAAG+TGG 0.561762 2_3:+45652041 Msa0294060:CDS
TCCTCCACAATACATTGGGC+GGG 0.561846 2_3:+45651896 Msa0294060:five_prime_UTR
CTTTAGATGACAGTTTACTA+GGG 0.562262 2_3:-45655675 None:intergenic
ACCATGTAAGGCTTGTTACT+GGG 0.562390 2_3:+45652474 Msa0294060:CDS
AAGCACAGGAAGAGTTTGAT+GGG 0.563128 2_3:+45653482 Msa0294060:CDS
GATGAATTATCCTGCTAGAA+GGG 0.563672 2_3:-45656974 None:intergenic
TAGTAAAGTCTATAGCAGAA+AGG 0.563965 2_3:+45657154 Msa0294060:three_prime_UTR
TACAACTAAGAAAGCTGATA+CGG 0.567031 2_3:+45656291 Msa0294060:CDS
TCCCAGTAACAAGCCTTACA+TGG 0.567820 2_3:-45652475 None:intergenic
TAGCTTGCACACTATATACC+TGG 0.568621 2_3:-45653516 None:intergenic
TGATGGGAAATGCTCAGTCC+AGG 0.568705 2_3:+45653498 Msa0294060:CDS
CAAAGAGTTACAATATTCAA+GGG 0.572390 2_3:+45656950 Msa0294060:three_prime_UTR
TTCCTCCACAATACATTGGG+CGG 0.572825 2_3:+45651895 Msa0294060:five_prime_UTR
TCCCGCCCAATGTATTGTGG+AGG 0.574963 2_3:-45651897 None:intergenic
AACTGAAGTAGTCTGGGAGG+GGG 0.575395 2_3:+45656237 Msa0294060:CDS
CAAGCCTTGCGCAGTGCCAG+AGG 0.577317 2_3:+45655318 Msa0294060:CDS
TCAGCAAGTGCACAAGTACT+GGG 0.578189 2_3:+45655836 Msa0294060:CDS
ACATGAGGATGGGTTGGAAG+TGG 0.582631 2_3:+45652409 Msa0294060:CDS
AAAGGACAAGCTGATAAAAG+TGG 0.583030 2_3:+45655241 Msa0294060:CDS
GTAACTGAAGTAGTCTGGGA+GGG 0.592954 2_3:+45656235 Msa0294060:intron
TACAATGAATTGTGGTGTGA+TGG 0.593465 2_3:+45657131 Msa0294060:three_prime_UTR
AACATAAAGGATCCGAAACA+GGG 0.599044 2_3:+45656882 Msa0294060:CDS
TCAAATACTACTGGAAGAGG+AGG 0.613938 2_3:+45656843 Msa0294060:CDS
ATCATCCAACAGGAAAAGAA+GGG 0.618627 2_3:+45655594 Msa0294060:CDS
GATGATTCTATTTATACCTG+GGG 0.634763 2_3:-45651865 None:intergenic
CTAAAGTTGATCTCAAAACA+CGG 0.639840 2_3:+45655098 Msa0294060:CDS
TGTGCAAGCTAGTATTCCAA+AGG 0.641371 2_3:+45653528 Msa0294060:CDS
AAAAGTGGCTCTGTTAATGG+AGG 0.643109 2_3:+45655256 Msa0294060:CDS
TGTGCTCATGAAGCAGTACT+GGG 0.649978 2_3:+45655529 Msa0294060:CDS
GATGTCAAGAGTGAAAGCAA+TGG 0.672437 2_3:+45655133 Msa0294060:CDS
AAGACCAGGATTGATGAGCG+AGG 0.681878 2_3:+45655964 Msa0294060:CDS
TGATACGGTTGCAAAGAAAG+CGG 0.688933 2_3:+45656306 Msa0294060:CDS
AGTAACTGAAGTAGTCTGGG+AGG 0.694022 2_3:+45656234 Msa0294060:intron
CATCAGTTTAGCATCACCTG+AGG 0.714142 2_3:+45655651 Msa0294060:CDS
ATCGGAAGAGAACGAAACGA+CGG 0.715278 2_3:-45651967 None:intergenic
CTGGGTGACAGTGATGACGA+TGG 0.808132 2_3:+45655547 Msa0294060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATATAATATAATATGATTT+TGG + chr2_3:45654394-45654413 Msa0294060:intron 10.0%
!!! GGAATTTTTTTTTTTTTTTT+TGG + chr2_3:45654537-45654556 Msa0294060:intron 10.0%
!!! AAATATTAGATTGATTATTT+TGG - chr2_3:45654702-45654721 None:intergenic 10.0%
!!! AAGAAATTTAGGATAAAAAA+AGG - chr2_3:45652148-45652167 None:intergenic 15.0%
!!! ATGAAAATTTGTTTAATTTC+AGG + chr2_3:45652175-45652194 Msa0294060:intron 15.0%
!!! TTGAAAATTTTGTTATATGT+AGG + chr2_3:45652363-45652382 Msa0294060:intron 15.0%
!! TATAATAATTATAGTTGTAG+CGG + chr2_3:45652530-45652549 Msa0294060:intron 15.0%
!!! TTATTTTTATCTCATAAACT+TGG + chr2_3:45652981-45653000 Msa0294060:intron 15.0%
!!! AGTATTTTAGTTTTTTGATA+AGG + chr2_3:45653672-45653691 Msa0294060:intron 15.0%
!!! TATTAGTCTATTAGAATATA+TGG + chr2_3:45653715-45653734 Msa0294060:intron 15.0%
!!! TTTTTTTATGAACACTAAAT+TGG - chr2_3:45654238-45654257 None:intergenic 15.0%
!! TAATTATGTCAGTAAAATAT+TGG - chr2_3:45655476-45655495 None:intergenic 15.0%
!!! ATTTTTGAAACAAAAGTTTA+CGG + chr2_3:45656727-45656746 Msa0294060:intron 15.0%
!! TCATGAAATCAAAGAAATTT+AGG - chr2_3:45652159-45652178 None:intergenic 20.0%
!! AGGGAAAAAAATACAATTAA+TGG - chr2_3:45652895-45652914 None:intergenic 20.0%
!! AACTAACTCAATTTAGATTT+AGG + chr2_3:45653287-45653306 Msa0294060:intron 20.0%
!! ATGTGCAGTTAAAAAAAAAT+TGG + chr2_3:45653351-45653370 Msa0294060:intron 20.0%
!! ACATGAAAGAAACATTATTA+GGG - chr2_3:45654111-45654130 None:intergenic 20.0%
!! TCTGATATTAAAATGTAGAA+TGG + chr2_3:45654372-45654391 Msa0294060:intron 20.0%
!! AATCTAATATTTCAATCTTC+TGG + chr2_3:45654710-45654729 Msa0294060:intron 20.0%
!! ATATATTCAATAAACCTGAA+TGG - chr2_3:45655382-45655401 None:intergenic 20.0%
!! AGTTAAAACAATGCATTTAA+GGG - chr2_3:45656001-45656020 None:intergenic 20.0%
!! CATATTATAGTCATACATAA+AGG - chr2_3:45656062-45656081 None:intergenic 20.0%
!! ACTTATATATGCATGATTAT+TGG + chr2_3:45656128-45656147 Msa0294060:intron 20.0%
!! CTTATATATGCATGATTATT+GGG + chr2_3:45656129-45656148 Msa0294060:intron 20.0%
!!! AGTGAATGAAAATTTTGATA+AGG - chr2_3:45656159-45656178 None:intergenic 20.0%
!!! GAATTGAATGAATGAAATTT+TGG + chr2_3:45656378-45656397 Msa0294060:intron 20.0%
!!! CATTTTAATATCATGAAATC+AGG - chr2_3:45656539-45656558 None:intergenic 20.0%
! TGATGATTCTATTTATACCT+GGG - chr2_3:45651869-45651888 None:intergenic 25.0%
! ATGATGATTCTATTTATACC+TGG - chr2_3:45651870-45651889 None:intergenic 25.0%
! AGATTCAATTTCGTGAATTA+GGG - chr2_3:45652019-45652038 None:intergenic 25.0%
!!! AGGCTTTGAAATTGAAAATT+GGG - chr2_3:45652128-45652147 None:intergenic 25.0%
!!! AAGGCTTTGAAATTGAAAAT+TGG - chr2_3:45652129-45652148 None:intergenic 25.0%
! TATCATCAAATGAAGCAAAA+AGG + chr2_3:45652231-45652250 Msa0294060:CDS 25.0%
!!! ATTGATGGGTTTTTTTACTA+TGG + chr2_3:45652320-45652339 Msa0294060:intron 25.0%
! GATAATTTGAGTAAATGTCT+TGG + chr2_3:45652622-45652641 Msa0294060:intron 25.0%
! TTGAAAACAAACATAACTGA+TGG + chr2_3:45653082-45653101 Msa0294060:intron 25.0%
! TAACTCAATTTAGATTTAGG+TGG + chr2_3:45653290-45653309 Msa0294060:intron 25.0%
! AACTCAATTTAGATTTAGGT+GGG + chr2_3:45653291-45653310 Msa0294060:intron 25.0%
!!! GAAATTTTTTCTCAACTCAT+TGG - chr2_3:45653389-45653408 None:intergenic 25.0%
!! GAACTGACAAATTTTCTTTT+TGG + chr2_3:45653852-45653871 Msa0294060:intron 25.0%
! CACATGAAAGAAACATTATT+AGG - chr2_3:45654112-45654131 None:intergenic 25.0%
! ATAAGAAAATAGTGCAACAA+GGG - chr2_3:45654328-45654347 None:intergenic 25.0%
! CTTCATTAATGAAGTTATTG+AGG - chr2_3:45654768-45654787 None:intergenic 25.0%
!! TCTCTAATTCTTTTGTACAA+AGG + chr2_3:45654945-45654964 Msa0294060:CDS 25.0%
!! CTCTAATTCTTTTGTACAAA+GGG + chr2_3:45654946-45654965 Msa0294060:CDS 25.0%
! TATAACTATAATCATCGAGA+AGG - chr2_3:45655425-45655444 None:intergenic 25.0%
!!! TGACTTTTTGTCATTTTGTT+CGG - chr2_3:45655704-45655723 None:intergenic 25.0%
!!! TGCTTTGAATTTTGATTTAC+CGG + chr2_3:45655735-45655754 Msa0294060:CDS 25.0%
!! ATAACTGATAAATCTTTTGG+TGG - chr2_3:45655817-45655836 None:intergenic 25.0%
!! CTGATAACTGATAAATCTTT+TGG - chr2_3:45655820-45655839 None:intergenic 25.0%
! TCCAGAAATTTGTGTAAATA+AGG + chr2_3:45655891-45655910 Msa0294060:CDS 25.0%
!! TCCTTATTTACACAAATTTC+TGG - chr2_3:45655895-45655914 None:intergenic 25.0%
! AAATAAGGATAGTGCAAAAA+AGG + chr2_3:45655906-45655925 Msa0294060:CDS 25.0%
! GAGTTAAAACAATGCATTTA+AGG - chr2_3:45656002-45656021 None:intergenic 25.0%
!! TGAAATTTTCGTAAAGAACT+AGG - chr2_3:45656109-45656128 None:intergenic 25.0%
! TATGAGCAATTCATGAATAT+AGG + chr2_3:45656572-45656591 Msa0294060:intron 25.0%
!! GTACTTTCAATCTGATTTTA+TGG + chr2_3:45656683-45656702 Msa0294060:intron 25.0%
! CTTGAATATTGTAACTCTTT+GGG - chr2_3:45656951-45656970 None:intergenic 25.0%
! CAAAGAGTTACAATATTCAA+GGG + chr2_3:45656950-45656969 Msa0294060:three_prime_UTR 25.0%
!!! ATCTAGTTCTATTTTAGTCT+GGG + chr2_3:45657037-45657056 Msa0294060:three_prime_UTR 25.0%
! TATTCAGAATACAGATTACA+AGG - chr2_3:45657068-45657087 None:intergenic 25.0%
! AATAGTTGAAATACCGTAAA+TGG + chr2_3:45657084-45657103 Msa0294060:three_prime_UTR 25.0%
! ATAGTTGAAATACCGTAAAT+GGG + chr2_3:45657085-45657104 Msa0294060:three_prime_UTR 25.0%
! TTGTTATGTACAATGAATTG+TGG + chr2_3:45657123-45657142 Msa0294060:three_prime_UTR 25.0%
GATGATTCTATTTATACCTG+GGG - chr2_3:45651868-45651887 None:intergenic 30.0%
AATTTCGTGAATTAGGGATA+GGG - chr2_3:45652013-45652032 None:intergenic 30.0%
GAGATTCAATTTCGTGAATT+AGG - chr2_3:45652020-45652039 None:intergenic 30.0%
!! GCTTTGAAATTGAAAATTGG+GGG - chr2_3:45652126-45652145 None:intergenic 30.0%
!! GGCTTTGAAATTGAAAATTG+GGG - chr2_3:45652127-45652146 None:intergenic 30.0%
!! AATTTCAGGTTTCATACAAG+TGG + chr2_3:45652189-45652208 Msa0294060:intron 30.0%
ATCAAATGAAGCAAAAAGGT+AGG + chr2_3:45652235-45652254 Msa0294060:intron 30.0%
TCAAATGAAGCAAAAAGGTA+GGG + chr2_3:45652236-45652255 Msa0294060:intron 30.0%
!!! TTTAGTTTTCTGCAGTTGAT+CGG + chr2_3:45652261-45652280 Msa0294060:intron 30.0%
TTTGTTGAAAAACATGAGGA+TGG + chr2_3:45652398-45652417 Msa0294060:CDS 30.0%
TTGTTGAAAAACATGAGGAT+GGG + chr2_3:45652399-45652418 Msa0294060:CDS 30.0%
TTTAAGTGTCAGTGCTATAT+AGG + chr2_3:45652682-45652701 Msa0294060:intron 30.0%
TGTCAGTGTTGTATTATTGT+CGG + chr2_3:45652803-45652822 Msa0294060:intron 30.0%
TATTAGACATGCCTTCAATT+AGG + chr2_3:45652827-45652846 Msa0294060:intron 30.0%
!! GTGTTTTCTTCATAGTTTTG+TGG + chr2_3:45653005-45653024 Msa0294060:intron 30.0%
TGAGTTTATGCTTGTTTGTT+TGG + chr2_3:45653032-45653051 Msa0294060:intron 30.0%
TTCATGTCATGGTTTCATAT+AGG - chr2_3:45653196-45653215 None:intergenic 30.0%
ATTGACCATACCAAAATGAT+GGG - chr2_3:45653239-45653258 None:intergenic 30.0%
AATTGACCATACCAAAATGA+TGG - chr2_3:45653240-45653259 None:intergenic 30.0%
GAAAAAATTTCATGTCACTC+TGG + chr2_3:45653398-45653417 Msa0294060:intron 30.0%
CCTATTTCCTAATGTTTGTA+AGG - chr2_3:45653428-45653447 None:intergenic 30.0%
CCTTACAAACATTAGGAAAT+AGG + chr2_3:45653425-45653444 Msa0294060:intron 30.0%
!! ACTAATATCATGACTTGCTT+GGG - chr2_3:45653759-45653778 None:intergenic 30.0%
!! TACTAATATCATGACTTGCT+TGG - chr2_3:45653760-45653779 None:intergenic 30.0%
AAGCAAGTCATGATATTAGT+AGG + chr2_3:45653759-45653778 Msa0294060:intron 30.0%
!!! ACAAGTGACCAGAAATTTTT+TGG + chr2_3:45653923-45653942 Msa0294060:intron 30.0%
!!! CAAGTGACCAGAAATTTTTT+GGG + chr2_3:45653924-45653943 Msa0294060:intron 30.0%
AACGTTACCCAAAAAATTTC+TGG - chr2_3:45653934-45653953 None:intergenic 30.0%
TTTCTGTGAATTGCTTTAGT+AGG + chr2_3:45653952-45653971 Msa0294060:intron 30.0%
GTAATAGTGATAGATTGTCT+TGG - chr2_3:45654063-45654082 None:intergenic 30.0%
CTATTACATGTTCCAAAACT+TGG + chr2_3:45654076-45654095 Msa0294060:intron 30.0%
TGAAAGAAACATTATTAGGG+AGG - chr2_3:45654108-45654127 None:intergenic 30.0%
TCTTTCATGTGACCAAAAAA+TGG + chr2_3:45654121-45654140 Msa0294060:intron 30.0%
TAAGAAAATAGTGCAACAAG+GGG - chr2_3:45654327-45654346 None:intergenic 30.0%
GATAAGAAAATAGTGCAACA+AGG - chr2_3:45654329-45654348 None:intergenic 30.0%
! TTTTGTAGCCAGAAAAAAAG+TGG + chr2_3:45654625-45654644 Msa0294060:intron 30.0%
! CTTTTGTACAAAGGGTAAAA+AGG + chr2_3:45654954-45654973 Msa0294060:CDS 30.0%
TGAACAACATTACTCTTTGT+TGG - chr2_3:45655043-45655062 None:intergenic 30.0%
! GAATTGTGTGCTATGTTTTT+AGG - chr2_3:45655073-45655092 None:intergenic 30.0%
! CTAAAGTTGATCTCAAAACA+CGG + chr2_3:45655098-45655117 Msa0294060:CDS 30.0%
CTTTAGATGACAGTTTACTA+GGG - chr2_3:45655678-45655697 None:intergenic 30.0%
TCTTTAGATGACAGTTTACT+AGG - chr2_3:45655679-45655698 None:intergenic 30.0%
! TGAAATTAAGCCATTGGTTA+AGG + chr2_3:45655759-45655778 Msa0294060:CDS 30.0%
!!! AATGCATTGTTTTAACTCAC+CGG + chr2_3:45656004-45656023 Msa0294060:intron 30.0%
ATAATATGGAAGAAAGAACC+CGG - chr2_3:45656026-45656045 None:intergenic 30.0%
GTGACTTCTACACTATAATA+TGG - chr2_3:45656040-45656059 None:intergenic 30.0%
GTATCCTTATCATCTTTCTT+TGG - chr2_3:45656274-45656293 None:intergenic 30.0%
TACAACTAAGAAAGCTGATA+CGG + chr2_3:45656291-45656310 Msa0294060:CDS 30.0%
AGAATCACTGTATACTTCAA+GGG - chr2_3:45656448-45656467 None:intergenic 30.0%
AGTATACAGTGATTCTCATT+AGG + chr2_3:45656452-45656471 Msa0294060:intron 30.0%
TTATTTCCTAAAGTTGCATC+AGG + chr2_3:45656498-45656517 Msa0294060:intron 30.0%
TATTTCCTAAAGTTGCATCA+GGG + chr2_3:45656499-45656518 Msa0294060:intron 30.0%
TATAGGCAGTTCATGAATAT+AGG + chr2_3:45656589-45656608 Msa0294060:intron 30.0%
ATGTCTACAAACTTCAAAGT+TGG - chr2_3:45656656-45656675 None:intergenic 30.0%
! AATCAGATTGAAAGTACAGT+GGG - chr2_3:45656680-45656699 None:intergenic 30.0%
! AAATCAGATTGAAAGTACAG+TGG - chr2_3:45656681-45656700 None:intergenic 30.0%
CCTTGAATATTGTAACTCTT+TGG - chr2_3:45656952-45656971 None:intergenic 30.0%
CCAAAGAGTTACAATATTCA+AGG + chr2_3:45656949-45656968 Msa0294060:three_prime_UTR 30.0%
!!! ATGTTACTTTTGTGATTGTG+AGG + chr2_3:45656998-45657017 Msa0294060:three_prime_UTR 30.0%
!!! GATCTAGTTCTATTTTAGTC+TGG + chr2_3:45657036-45657055 Msa0294060:three_prime_UTR 30.0%
AGAAATACACAACCCATTTA+CGG - chr2_3:45657100-45657119 None:intergenic 30.0%
TAGTAAAGTCTATAGCAGAA+AGG + chr2_3:45657154-45657173 Msa0294060:three_prime_UTR 30.0%
AGTAAAGTCTATAGCAGAAA+GGG + chr2_3:45657155-45657174 Msa0294060:three_prime_UTR 30.0%
CAATTTCGTGAATTAGGGAT+AGG - chr2_3:45652014-45652033 None:intergenic 35.0%
!! TTGCTGCTTTGTGAAATTGA+TGG + chr2_3:45652305-45652324 Msa0294060:intron 35.0%
!! TGCTGCTTTGTGAAATTGAT+GGG + chr2_3:45652306-45652325 Msa0294060:intron 35.0%
TGTTATATGTAGGTTGCTTC+AGG + chr2_3:45652373-45652392 Msa0294060:intron 35.0%
!! GGAGTTTGTTGAAAAACATG+AGG + chr2_3:45652394-45652413 Msa0294060:CDS 35.0%
TGAACTATGAAGGTTAGACA+CGG + chr2_3:45652559-45652578 Msa0294060:intron 35.0%
!! TAAATGTCTTGGTGTCGTAT+TGG + chr2_3:45652633-45652652 Msa0294060:intron 35.0%
! CAGTGAAGTATTAAGCAGTA+GGG - chr2_3:45652914-45652933 None:intergenic 35.0%
! ACAGTGAAGTATTAAGCAGT+AGG - chr2_3:45652915-45652934 None:intergenic 35.0%
! ACAAACATAACTGATGGTGA+TGG + chr2_3:45653088-45653107 Msa0294060:intron 35.0%
CCTGTACAAAAAGATGCTAA+AGG - chr2_3:45653144-45653163 None:intergenic 35.0%
! CCTTTAGCATCTTTTTGTAC+AGG + chr2_3:45653141-45653160 Msa0294060:intron 35.0%
TGTACAGGAACTGAAGTAAT+TGG + chr2_3:45653156-45653175 Msa0294060:intron 35.0%
AACCATGACATGAACCAATT+TGG + chr2_3:45653202-45653221 Msa0294060:intron 35.0%
! GTTTTTCTGACCCATCATTT+TGG + chr2_3:45653226-45653245 Msa0294060:intron 35.0%
!!! CATTTTTTATGCAGAAGCAC+AGG + chr2_3:45653468-45653487 Msa0294060:intron 35.0%
TTCCAAAGCTGATAATTGCT+TGG + chr2_3:45653609-45653628 Msa0294060:CDS 35.0%
TCCAAAGCTGATAATTGCTT+GGG + chr2_3:45653610-45653629 Msa0294060:CDS 35.0%
ATAATTGCTTGGGAGACAAT+AGG + chr2_3:45653620-45653639 Msa0294060:CDS 35.0%
!! TAATATCATGACTTGCTTGG+GGG - chr2_3:45653757-45653776 None:intergenic 35.0%
!! CTAATATCATGACTTGCTTG+GGG - chr2_3:45653758-45653777 None:intergenic 35.0%
ATTTGTCAGTTCAGTATGAG+TGG - chr2_3:45653844-45653863 None:intergenic 35.0%
!!! TTTTTGGTTCTCTTTGCCAA+TGG + chr2_3:45653868-45653887 Msa0294060:intron 35.0%
ATTAGTGTTGTAATCGCCAT+TGG - chr2_3:45653887-45653906 None:intergenic 35.0%
!!! ACTGACACTGAACCATTTTT+TGG - chr2_3:45654136-45654155 None:intergenic 35.0%
CATATTCCAAAAGCAGAAGA+TGG - chr2_3:45654189-45654208 None:intergenic 35.0%
!! TCTTTCCATTGCTTTTGTGT+GGG + chr2_3:45654271-45654290 Msa0294060:intron 35.0%
!! AGAAAGCTGCTTTGAAAAGT+AGG + chr2_3:45654514-45654533 Msa0294060:intron 35.0%
!! GAAAGCTGCTTTGAAAAGTA+GGG + chr2_3:45654515-45654534 Msa0294060:intron 35.0%
!! AAAGCTGCTTTGAAAAGTAG+GGG + chr2_3:45654516-45654535 Msa0294060:intron 35.0%
!! CACTGATTCAGAAGCTTTAT+TGG - chr2_3:45654586-45654605 None:intergenic 35.0%
!!! TCAAACCACCACTTTTTTTC+TGG - chr2_3:45654636-45654655 None:intergenic 35.0%
! AAGAATTTTCTTTTACCGCC+AGG + chr2_3:45654812-45654831 Msa0294060:intron 35.0%
CTGTCTTATATGTGTCTTTG+CGG + chr2_3:45654873-45654892 Msa0294060:intron 35.0%
! GGCTAACTAGCATATTTTTC+AGG + chr2_3:45654912-45654931 Msa0294060:intron 35.0%
!!! AGCATATTTTTCAGGTTCTG+TGG + chr2_3:45654920-45654939 Msa0294060:intron 35.0%
!!! GCATATTTTTCAGGTTCTGT+GGG + chr2_3:45654921-45654940 Msa0294060:intron 35.0%
!! TACAGATTTTACTTCTGGAG+TGG - chr2_3:45655008-45655027 None:intergenic 35.0%
! CCTACTACAGATTTTACTTC+TGG - chr2_3:45655013-45655032 None:intergenic 35.0%
CCAGAAGTAAAATCTGTAGT+AGG + chr2_3:45655010-45655029 Msa0294060:CDS 35.0%
AGTAAAATCTGTAGTAGGCT+TGG + chr2_3:45655015-45655034 Msa0294060:CDS 35.0%
GTAAAATCTGTAGTAGGCTT+GGG + chr2_3:45655016-45655035 Msa0294060:CDS 35.0%
!!! TTGTGTGCTATGTTTTTAGG+AGG - chr2_3:45655070-45655089 None:intergenic 35.0%
! GACTTTTCTTTCTCTGCAAT+AGG - chr2_3:45655196-45655215 None:intergenic 35.0%
AAAGGACAAGCTGATAAAAG+TGG + chr2_3:45655241-45655260 Msa0294060:CDS 35.0%
! GATAAAAGTGGCTCTGTTAA+TGG + chr2_3:45655253-45655272 Msa0294060:CDS 35.0%
! ATCATGTTACTAGTTTCCTC+TGG - chr2_3:45655337-45655356 None:intergenic 35.0%
AACATGATTTCAAAACCTGC+AGG + chr2_3:45655349-45655368 Msa0294060:CDS 35.0%
! CCATTTTCAACAACTTCTGA+AGG - chr2_3:45655502-45655521 None:intergenic 35.0%
CCTTCAGAAGTTGTTGAAAA+TGG + chr2_3:45655499-45655518 Msa0294060:intron 35.0%
ATCATCCAACAGGAAAAGAA+GGG + chr2_3:45655594-45655613 Msa0294060:CDS 35.0%
ACCAATGGCTTAATTTCAAC+CGG - chr2_3:45655757-45655776 None:intergenic 35.0%
ACTCTTTCTTCCTTAACCAA+TGG - chr2_3:45655772-45655791 None:intergenic 35.0%
!! CTGATAAATCTTTTGGTGGT+TGG - chr2_3:45655813-45655832 None:intergenic 35.0%
!! TTCATCACTTTTCTCCTCTT+AGG - chr2_3:45655946-45655965 None:intergenic 35.0%
!!! ATGCATTGTTTTAACTCACC+GGG + chr2_3:45656005-45656024 Msa0294060:intron 35.0%
TTCAGTAACTGAAGTAGTCT+GGG + chr2_3:45656231-45656250 Msa0294060:intron 35.0%
AGAGCCAAAGAAAGATGATA+AGG + chr2_3:45656267-45656286 Msa0294060:CDS 35.0%
ACATCTACCAAAGCTGTTAA+CGG + chr2_3:45656334-45656353 Msa0294060:CDS 35.0%
GGAAGCAATCAATACTTCAA+AGG + chr2_3:45656399-45656418 Msa0294060:intron 35.0%
GAGAATCACTGTATACTTCA+AGG - chr2_3:45656449-45656468 None:intergenic 35.0%
! ATCAGATTGAAAGTACAGTG+GGG - chr2_3:45656679-45656698 None:intergenic 35.0%
ACATCAAATACTACTGGAAG+AGG + chr2_3:45656840-45656859 Msa0294060:CDS 35.0%
CAAGAAAGCAGGAAACATAA+AGG + chr2_3:45656869-45656888 Msa0294060:CDS 35.0%
AAACATAAAGGATCCGAAAC+AGG + chr2_3:45656881-45656900 Msa0294060:CDS 35.0%
AACATAAAGGATCCGAAACA+GGG + chr2_3:45656882-45656901 Msa0294060:CDS 35.0%
GAAAGAATATTGCCCTGTTT+CGG - chr2_3:45656897-45656916 None:intergenic 35.0%
! ATTGTAACTCTTTGGGAAGA+TGG - chr2_3:45656944-45656963 None:intergenic 35.0%
GATGAATTATCCTGCTAGAA+GGG - chr2_3:45656977-45656996 None:intergenic 35.0%
TGATGAATTATCCTGCTAGA+AGG - chr2_3:45656978-45656997 None:intergenic 35.0%
TACAATGAATTGTGGTGTGA+TGG + chr2_3:45657131-45657150 Msa0294060:three_prime_UTR 35.0%
AAAATTGGGGATATTTCCCC+AGG + chr2_3:45651849-45651868 Msa0294060:five_prime_UTR 40.0%
TCCATTCCTCCACAATACAT+TGG + chr2_3:45651891-45651910 Msa0294060:five_prime_UTR 40.0%
CCATTCCTCCACAATACATT+GGG + chr2_3:45651892-45651911 Msa0294060:five_prime_UTR 40.0%
AGAACGAAACGACGGTAAAA+AGG - chr2_3:45651962-45651981 None:intergenic 40.0%
GTGAATTAGGGATAGGGTTT+CGG - chr2_3:45652007-45652026 None:intergenic 40.0%
TGAAAAACATGAGGATGGGT+TGG + chr2_3:45652403-45652422 Msa0294060:CDS 40.0%
GTATTCCTAGCTACCATGTA+AGG + chr2_3:45652462-45652481 Msa0294060:CDS 40.0%
!! TACCATGTAAGGCTTGTTAC+TGG + chr2_3:45652473-45652492 Msa0294060:CDS 40.0%
!! ACCATGTAAGGCTTGTTACT+GGG + chr2_3:45652474-45652493 Msa0294060:CDS 40.0%
GCGGCAATTATGAACTATGA+AGG + chr2_3:45652549-45652568 Msa0294060:intron 40.0%
!! GTCGTATTGGTGTCAGATAT+CGG + chr2_3:45652646-45652665 Msa0294060:intron 40.0%
!! TCGTATTGGTGTCAGATATC+GGG + chr2_3:45652647-45652666 Msa0294060:intron 40.0%
TGTCAGTGCTATATAGGTAC+CGG + chr2_3:45652688-45652707 Msa0294060:intron 40.0%
! ATGCCTTCAATTAGGAGTGT+TGG + chr2_3:45652835-45652854 Msa0294060:intron 40.0%
! TGGTTTGAGTGTCAAGCTTT+TGG + chr2_3:45653052-45653071 Msa0294060:intron 40.0%
! GGTTTGAGTGTCAAGCTTTT+GGG + chr2_3:45653053-45653072 Msa0294060:intron 40.0%
! GTTTGAGTGTCAAGCTTTTG+GGG + chr2_3:45653054-45653073 Msa0294060:intron 40.0%
! CACCAAATTGGTTCATGTCA+TGG - chr2_3:45653207-45653226 None:intergenic 40.0%
GGGTCAGAAAAACACCAAAT+TGG - chr2_3:45653219-45653238 None:intergenic 40.0%
!! TCTGACCCATCATTTTGGTA+TGG + chr2_3:45653231-45653250 Msa0294060:intron 40.0%
! TGGAGTGCCTTACAAACATT+AGG + chr2_3:45653418-45653437 Msa0294060:intron 40.0%
AAGCACAGGAAGAGTTTGAT+GGG + chr2_3:45653482-45653501 Msa0294060:CDS 40.0%
! TAGCTTGCACACTATATACC+TGG - chr2_3:45653519-45653538 None:intergenic 40.0%
TGTGCAAGCTAGTATTCCAA+AGG + chr2_3:45653528-45653547 Msa0294060:CDS 40.0%
TCCCAAGCAATTATCAGCTT+TGG - chr2_3:45653614-45653633 None:intergenic 40.0%
GAAATTCGAGAAACCAAACC+AGG + chr2_3:45654157-45654176 Msa0294060:intron 40.0%
! ATCCTTCCATCTTCTGCTTT+TGG + chr2_3:45654180-45654199 Msa0294060:intron 40.0%
TTCCAAAAGCAGAAGATGGA+AGG - chr2_3:45654185-45654204 None:intergenic 40.0%
TGGAATATGCTCTCCACTAT+TGG + chr2_3:45654200-45654219 Msa0294060:intron 40.0%
GTGCTCTATCATTCCAATAG+TGG - chr2_3:45654216-45654235 None:intergenic 40.0%
!! GTCTTTCCATTGCTTTTGTG+TGG + chr2_3:45654270-45654289 Msa0294060:intron 40.0%
TGAAACCCACACAAAAGCAA+TGG - chr2_3:45654279-45654298 None:intergenic 40.0%
!! ATTGCTTTTGTGTGGGTTTC+AGG + chr2_3:45654278-45654297 Msa0294060:intron 40.0%
TGTAGCCAGAAAAAAAGTGG+TGG + chr2_3:45654628-45654647 Msa0294060:intron 40.0%
AAATATGCTAGTTAGCCACC+AGG - chr2_3:45654909-45654928 None:intergenic 40.0%
ACAAAGGGTAAAAAGGAACG+AGG + chr2_3:45654961-45654980 Msa0294060:CDS 40.0%
!!! GTGCTATGTTTTTAGGAGGT+TGG - chr2_3:45655066-45655085 None:intergenic 40.0%
TGATCTCAAAACACGGAATG+TGG + chr2_3:45655105-45655124 Msa0294060:CDS 40.0%
GATGTCAAGAGTGAAAGCAA+TGG + chr2_3:45655133-45655152 Msa0294060:CDS 40.0%
AAGAGTGAAAGCAATGGTAC+AGG + chr2_3:45655139-45655158 Msa0294060:CDS 40.0%
! TTGTCCTTTCTTTTTGCCTG+CGG - chr2_3:45655230-45655249 None:intergenic 40.0%
! AAAAGTGGCTCTGTTAATGG+AGG + chr2_3:45655256-45655275 Msa0294060:CDS 40.0%
TGATTTCAAAACCTGCAGGT+TGG + chr2_3:45655353-45655372 Msa0294060:intron 40.0%
! CTGCTTCATGAGCACAATTT+TGG - chr2_3:45655525-45655544 None:intergenic 40.0%
CCTGTTGGATGATCTTCTTA+AGG - chr2_3:45655587-45655606 None:intergenic 40.0%
CCTTAAGAAGATCATCCAAC+AGG + chr2_3:45655584-45655603 Msa0294060:CDS 40.0%
GATCATCCAACAGGAAAAGA+AGG + chr2_3:45655593-45655612 Msa0294060:CDS 40.0%
ACCGGTTGAAATTAAGCCAT+TGG + chr2_3:45655753-45655772 Msa0294060:CDS 40.0%
CTTCAGTAACTGAAGTAGTC+TGG + chr2_3:45656230-45656249 Msa0294060:intron 40.0%
TGATACGGTTGCAAAGAAAG+CGG + chr2_3:45656306-45656325 Msa0294060:CDS 40.0%
CATCTACCAAAGCTGTTAAC+GGG + chr2_3:45656335-45656354 Msa0294060:CDS 40.0%
ATAAGACTGTGCAAGTTGCA+AGG - chr2_3:45656482-45656501 None:intergenic 40.0%
TCAAACCCTGATGCAACTTT+AGG - chr2_3:45656507-45656526 None:intergenic 40.0%
GACAATCAGCTAGTAAGAAG+GGG - chr2_3:45656625-45656644 None:intergenic 40.0%
GGACAATCAGCTAGTAAGAA+GGG - chr2_3:45656626-45656645 None:intergenic 40.0%
TGGACAATCAGCTAGTAAGA+AGG - chr2_3:45656627-45656646 None:intergenic 40.0%
TACTAGCTGATTGTCCACTT+TGG + chr2_3:45656630-45656649 Msa0294060:intron 40.0%
AACTTCAAAGTTGGCCAAAG+TGG - chr2_3:45656647-45656666 None:intergenic 40.0%
CCAGTAGTATTTGATGTAGC+TGG - chr2_3:45656837-45656856 None:intergenic 40.0%
CCAGCTACATCAAATACTAC+TGG + chr2_3:45656834-45656853 Msa0294060:CDS 40.0%
TCAAATACTACTGGAAGAGG+AGG + chr2_3:45656843-45656862 Msa0294060:CDS 40.0%
CCCAATGTATTGTGGAGGAA+TGG - chr2_3:45651895-45651914 None:intergenic 45.0%
TTCCTCCACAATACATTGGG+CGG + chr2_3:45651895-45651914 Msa0294060:five_prime_UTR 45.0%
! TTTTCCCGCCCAATGTATTG+TGG - chr2_3:45651903-45651922 None:intergenic 45.0%
ATCGGAAGAGAACGAAACGA+CGG - chr2_3:45651970-45651989 None:intergenic 45.0%
CGTCTCAGATCAACTTCAAG+TGG + chr2_3:45652041-45652060 Msa0294060:CDS 45.0%
ATTGGGGGAAGAGAAGTAAG+AGG - chr2_3:45652111-45652130 None:intergenic 45.0%
GAAGTGGTGTATGCTTTGTC+TGG + chr2_3:45652425-45652444 Msa0294060:CDS 45.0%
ACAAGCCTTACATGGTAGCT+AGG - chr2_3:45652470-45652489 None:intergenic 45.0%
TCCCAGTAACAAGCCTTACA+TGG - chr2_3:45652478-45652497 None:intergenic 45.0%
!! CAGTGTCGATGTATCAGTGT+CGG - chr2_3:45652600-45652619 None:intergenic 45.0%
GTGTGTCTGTTTGACATGTC+CGG - chr2_3:45652710-45652729 None:intergenic 45.0%
GCACCAACACTCCTAATTGA+AGG - chr2_3:45652841-45652860 None:intergenic 45.0%
GAAGCACAGGAAGAGTTTGA+TGG + chr2_3:45653481-45653500 Msa0294060:intron 45.0%
TTGCTTGGGAGACAATAGGT+AGG + chr2_3:45653624-45653643 Msa0294060:intron 45.0%
ATGAGTGGCATCAAATCTGC+TGG - chr2_3:45653829-45653848 None:intergenic 45.0%
! GGGAGGAAAAAGCCAAGTTT+TGG - chr2_3:45654091-45654110 None:intergenic 45.0%
AAGATGGAAGGATCCTGGTT+TGG - chr2_3:45654173-45654192 None:intergenic 45.0%
AATGTGTGATGCATCTCTCC+AGG + chr2_3:45654458-45654477 Msa0294060:intron 45.0%
CGTTGTGCAATTACATGTCC+TGG - chr2_3:45654479-45654498 None:intergenic 45.0%
CTTTGCGGTTTCCTAATTCC+TGG + chr2_3:45654888-45654907 Msa0294060:intron 45.0%
CTAGTTAGCCACCAGGAATT+AGG - chr2_3:45654902-45654921 None:intergenic 45.0%
AGGGTAAAAAGGAACGAGGA+TGG + chr2_3:45654965-45654984 Msa0294060:CDS 45.0%
AGCAATGGTACAGGAAATGC+AGG + chr2_3:45655148-45655167 Msa0294060:CDS 45.0%
! TGTCCTTTCTTTTTGCCTGC+GGG - chr2_3:45655229-45655248 None:intergenic 45.0%
CTCTGTTAATGGAGGTTCGT+TGG + chr2_3:45655264-45655283 Msa0294060:CDS 45.0%
TTGTGCTCATGAAGCAGTAC+TGG + chr2_3:45655528-45655547 Msa0294060:CDS 45.0%
TGTGCTCATGAAGCAGTACT+GGG + chr2_3:45655529-45655548 Msa0294060:CDS 45.0%
! GACAACCCTTCTTTTCCTGT+TGG - chr2_3:45655602-45655621 None:intergenic 45.0%
CATCAGTTTAGCATCACCTG+AGG + chr2_3:45655651-45655670 Msa0294060:CDS 45.0%
ATCAGCAAGTGCACAAGTAC+TGG + chr2_3:45655835-45655854 Msa0294060:CDS 45.0%
TCAGCAAGTGCACAAGTACT+GGG + chr2_3:45655836-45655855 Msa0294060:CDS 45.0%
AGTGCAAAAAAGGTCTCTCC+AGG + chr2_3:45655916-45655935 Msa0294060:CDS 45.0%
TTTCTCCTCTTAGGTGAACC+TGG - chr2_3:45655937-45655956 None:intergenic 45.0%
GGAGAAAAGTGATGAAGACC+AGG + chr2_3:45655950-45655969 Msa0294060:CDS 45.0%
ATTGATGAGCGAGGAAGAGA+AGG + chr2_3:45655973-45655992 Msa0294060:CDS 45.0%
AGTAACTGAAGTAGTCTGGG+AGG + chr2_3:45656234-45656253 Msa0294060:intron 45.0%
GTAACTGAAGTAGTCTGGGA+GGG + chr2_3:45656235-45656254 Msa0294060:intron 45.0%
TAACTGAAGTAGTCTGGGAG+GGG + chr2_3:45656236-45656255 Msa0294060:CDS 45.0%
CACTAACCCGTTAACAGCTT+TGG - chr2_3:45656344-45656363 None:intergenic 45.0%
ACTTCAAGGGACACCTAACA+AGG - chr2_3:45656435-45656454 None:intergenic 45.0%
TCATTGCATTTCCAGTGCAC+CGG + chr2_3:45656797-45656816 Msa0294060:intron 45.0%
!! ACAATTAATATTAAAAAAAT+TGG + chr2_3:45651834-45651853 Msa0294060:five_prime_UTR 5.0%
!! CAATTAATATTAAAAAAATT+GGG + chr2_3:45651835-45651854 Msa0294060:five_prime_UTR 5.0%
!! AATTAATATTAAAAAAATTG+GGG + chr2_3:45651836-45651855 Msa0294060:five_prime_UTR 5.0%
!! TAATTATTGAATATATATTA+CGG - chr2_3:45653992-45654011 None:intergenic 5.0%
TCCTCCACAATACATTGGGC+GGG + chr2_3:45651896-45651915 Msa0294060:five_prime_UTR 50.0%
! ACGGTAAAAAGGCGCGTTTG+GGG - chr2_3:45651951-45651970 None:intergenic 50.0%
! GACGGTAAAAAGGCGCGTTT+GGG - chr2_3:45651952-45651971 None:intergenic 50.0%
! TCGGTGTTCGACATCGGAAT+CGG - chr2_3:45651988-45652007 None:intergenic 50.0%
!! AGGGTTTCGGTGTTCGACAT+CGG - chr2_3:45651994-45652013 None:intergenic 50.0%
!! ACATGAGGATGGGTTGGAAG+TGG + chr2_3:45652409-45652428 Msa0294060:CDS 50.0%
TGGTGTATGCTTTGTCTGGC+TGG + chr2_3:45652429-45652448 Msa0294060:CDS 50.0%
GTTACTGGGACAATGCTTGC+AGG + chr2_3:45652488-45652507 Msa0294060:CDS 50.0%
!! TTAGGAGTGTTGGTGCTGCA+TGG + chr2_3:45652845-45652864 Msa0294060:intron 50.0%
!!! AGTGTCAAGCTTTTGGGGTC+AGG + chr2_3:45653059-45653078 Msa0294060:intron 50.0%
TGATGGGAAATGCTCAGTCC+AGG + chr2_3:45653498-45653517 Msa0294060:CDS 50.0%
CAAAGCACAGCTGCATCCTT+TGG - chr2_3:45653547-45653566 None:intergenic 50.0%
CAAAGGATGCAGCTGTGCTT+TGG + chr2_3:45653545-45653564 Msa0294060:CDS 50.0%
AGCAGAAGATGGAAGGATCC+TGG - chr2_3:45654178-45654197 None:intergenic 50.0%
TGCAACAAGGGGTGAGAAAG+AGG - chr2_3:45654316-45654335 None:intergenic 50.0%
AGAGTTCAAGACTGAGCACC+TGG - chr2_3:45654833-45654852 None:intergenic 50.0%
TGCGGTTTCCTAATTCCTGG+TGG + chr2_3:45654891-45654910 Msa0294060:intron 50.0%
AAGGAACGAGGATGGACAAC+CGG + chr2_3:45654973-45654992 Msa0294060:CDS 50.0%
! TTCTTTTTGCCTGCGGGCAA+GGG - chr2_3:45655223-45655242 None:intergenic 50.0%
! TTTCTTTTTGCCTGCGGGCA+AGG - chr2_3:45655224-45655243 None:intergenic 50.0%
TTGCCCGCAGGCAAAAAGAA+AGG + chr2_3:45655223-45655242 Msa0294060:CDS 50.0%
AGGTTCGTTGGCAAGCTTCT+GGG + chr2_3:45655276-45655295 Msa0294060:CDS 50.0%
! CAAGGCTTGGGTTTTGCAGA+TGG - chr2_3:45655307-45655326 None:intergenic 50.0%
CTGAATGGAAACCAACCTGC+AGG - chr2_3:45655367-45655386 None:intergenic 50.0%
!! CTGCAGGTTGGTTTCCATTC+AGG + chr2_3:45655365-45655384 Msa0294060:intron 50.0%
GACAGTTTACTAGGGACCTC+AGG - chr2_3:45655670-45655689 None:intergenic 50.0%
TCTCTCCAGGTTCACCTAAG+AGG + chr2_3:45655929-45655948 Msa0294060:CDS 50.0%
AAGACCAGGATTGATGAGCG+AGG + chr2_3:45655964-45655983 Msa0294060:CDS 50.0%
TCTTCCTCGCTCATCAATCC+TGG - chr2_3:45655971-45655990 None:intergenic 50.0%
AACTGAAGTAGTCTGGGAGG+GGG + chr2_3:45656237-45656256 Msa0294060:CDS 50.0%
AGGCTGCATGACTCCTTGTT+AGG + chr2_3:45656419-45656438 Msa0294060:intron 50.0%
GCTGGTAGCTTCTTAGTTGC+CGG - chr2_3:45656819-45656838 None:intergenic 50.0%
AGAGGAGGAAGCAAGAAAGC+AGG + chr2_3:45656858-45656877 Msa0294060:CDS 50.0%
ATTCAAGGGACCCTTCTAGC+AGG + chr2_3:45656964-45656983 Msa0294060:three_prime_UTR 50.0%
TCCCGCCCAATGTATTGTGG+AGG - chr2_3:45651900-45651919 None:intergenic 55.0%
! CGACGGTAAAAAGGCGCGTT+TGG - chr2_3:45651953-45651972 None:intergenic 55.0%
!! TGTGTGGGTTTCAGGTTCGC+TGG + chr2_3:45654286-45654305 Msa0294060:intron 55.0%
GTTCAAGACTGAGCACCTGG+CGG - chr2_3:45654830-45654849 None:intergenic 55.0%
! TCTGGAGTGGCAGAAACTGC+CGG - chr2_3:45654995-45655014 None:intergenic 55.0%
GAGGTTCGTTGGCAAGCTTC+TGG + chr2_3:45655275-45655294 Msa0294060:CDS 55.0%
GGTTCGTTGGCAAGCTTCTG+GGG + chr2_3:45655277-45655296 Msa0294060:CDS 55.0%
! CTGGGTGACAGTGATGACGA+TGG + chr2_3:45655547-45655566 Msa0294060:CDS 55.0%
CTTCTTAGTTGCCGGTGCAC+TGG - chr2_3:45656811-45656830 None:intergenic 55.0%
AAGTCTCTTCCCTTGCCCGC+AGG + chr2_3:45655211-45655230 Msa0294060:CDS 60.0%
TCTGGCACTGCGCAAGGCTT+GGG - chr2_3:45655319-45655338 None:intergenic 60.0%
GTTTCCTCTGGCACTGCGCA+AGG - chr2_3:45655325-45655344 None:intergenic 60.0%
TGAAGTAGTCTGGGAGGGGG+AGG + chr2_3:45656240-45656259 Msa0294060:CDS 60.0%
CTCTGGCACTGCGCAAGGCT+TGG - chr2_3:45655320-45655339 None:intergenic 65.0%
CAAGCCTTGCGCAGTGCCAG+AGG + chr2_3:45655318-45655337 Msa0294060:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 45651813 45657205 45651813 ID=Msa0294060;Name=Msa0294060
chr2_3 mRNA 45651813 45657205 45651813 ID=Msa0294060-mRNA-1;Parent=Msa0294060;Name=Msa0294060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=181|1|1|1|1|1|8|267|527
chr2_3 exon 45651813 45652062 45651813 ID=Msa0294060-mRNA-1:exon:14232;Parent=Msa0294060-mRNA-1
chr2_3 exon 45652197 45652252 45652197 ID=Msa0294060-mRNA-1:exon:14233;Parent=Msa0294060-mRNA-1
chr2_3 exon 45652385 45652509 45652385 ID=Msa0294060-mRNA-1:exon:14234;Parent=Msa0294060-mRNA-1
chr2_3 exon 45653482 45653641 45653482 ID=Msa0294060-mRNA-1:exon:14235;Parent=Msa0294060-mRNA-1
chr2_3 exon 45654934 45655370 45654934 ID=Msa0294060-mRNA-1:exon:14236;Parent=Msa0294060-mRNA-1
chr2_3 exon 45655506 45655994 45655506 ID=Msa0294060-mRNA-1:exon:14237;Parent=Msa0294060-mRNA-1
chr2_3 exon 45656236 45656356 45656236 ID=Msa0294060-mRNA-1:exon:14238;Parent=Msa0294060-mRNA-1
chr2_3 exon 45656812 45657205 45656812 ID=Msa0294060-mRNA-1:exon:14239;Parent=Msa0294060-mRNA-1
chr2_3 five_prime_UTR 45651813 45651993 45651813 ID=Msa0294060-mRNA-1:five_prime_utr;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45651994 45652062 45651994 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45652197 45652252 45652197 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45652385 45652509 45652385 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45653482 45653641 45653482 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45654934 45655370 45654934 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45655506 45655994 45655506 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45656236 45656356 45656236 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 CDS 45656812 45656938 45656812 ID=Msa0294060-mRNA-1:cds;Parent=Msa0294060-mRNA-1
chr2_3 three_prime_UTR 45656939 45657205 45656939 ID=Msa0294060-mRNA-1:three_prime_utr;Parent=Msa0294060-mRNA-1
Gene Sequence

>Msa0294060

ATGTCGAACACCGAAACCCTATCCCTAATTCACGAAATTGAATCTCTCGTCTCAGATCAACTTCAAGTGGTTTCATACAAGTGGCTTAGTCGCAATTATAAGATATCATCAAATGAAGCAAAAAGGTTGCTTCAGGAGTTTGTTGAAAAACATGAGGATGGGTTGGAAGTGGTGTATGCTTTGTCTGGCTGGTTAAAGAGTAGTATTCCTAGCTACCATGTAAGGCTTGTTACTGGGACAATGCTTGCAGAAGCACAGGAAGAGTTTGATGGGAAATGCTCAGTCCAGGTATATAGTGTGCAAGCTAGTATTCCAAAGGATGCAGCTGTGCTTTGGAATGCAGAATTCATTCAAGCAGAAGAGCTCTTCAAGAAGCTTTCCAAAGCTGATAATTGCTTGGGAGACAATAGGTTCTGTGGGATCTCTAATTCTTTTGTACAAAGGGTAAAAAGGAACGAGGATGGACAACCGGCAGTTTCTGCCACTCCAGAAGTAAAATCTGTAGTAGGCTTGGGACCAACAAAGAGTAATGTTGTTCACCAACCTCCTAAAAACATAGCACACAATTCTATTGCTAAAGTTGATCTCAAAACACGGAATGTGGAGAAAGATGTCAAGAGTGAAAGCAATGGTACAGGAAATGCAGGAGTTCATGATAACATCAATAAACCTATTGCAGAGAAAGAAAAGTCTCTTCCCTTGCCCGCAGGCAAAAAGAAAGGACAAGCTGATAAAAGTGGCTCTGTTAATGGAGGTTCGTTGGCAAGCTTCTGGGGTCGTCCATCTGCAAAACCCAAGCCTTGCGCAGTGCCAGAGGAAACTAGTAACATGATTTCAAAACCTGCAGAAGTTGTTGAAAATGGCCAAAATTGTGCTCATGAAGCAGTACTGGGTGACAGTGATGACGATGGTAATCAAAGTGTCGCCTTAAGAAGATCATCCAACAGGAAAAGAAGGGTTGTCTTTGATTTCTCAGATGAAGATGAAGATGTCATCAGTTTAGCATCACCTGAGGTCCCTAGTAAACTGTCATCTAAAGATTCCGAACAAAATGACAAAAAGTCATTAGAGAAAGTTGCTTTGAATTTTGATTTACCGGTTGAAATTAAGCCATTGGTTAAGGAAGAAAGAGTAACTGAGAAAAAAGTTTTCCAACCACCAAAAGATTTATCAGTTATCAGCAAGTGCACAAGTACTGGGAAATCATCTACTGAGAAGCTGCAGAGCAGTGCTCCAGAAATTTGTGTAAATAAGGATAGTGCAAAAAAGGTCTCTCCAGGTTCACCTAAGAGGAGAAAAGTGATGAAGACCAGGATTGATGAGCGAGGAAGAGAAGTAACTGAAGTAGTCTGGGAGGGGGAGGAGACAGAGCCAAAGAAAGATGATAAGGATACAACTAAGAAAGCTGATACGGTTGCAAAGAAAGCGGACAATACATCTACCAAAGCTGTTAACGGTGCACCGGCAACTAAGAAGCTACCAGCTACATCAAATACTACTGGAAGAGGAGGAAGCAAGAAAGCAGGAAACATAAAGGATCCGAAACAGGGCAATATTCTTTCATTTTTCAAAAAGAAAGTATGA

Protein sequence

>Msa0294060

MSNTETLSLIHEIESLVSDQLQVVSYKWLSRNYKISSNEAKRLLQEFVEKHEDGLEVVYALSGWLKSSIPSYHVRLVTGTMLAEAQEEFDGKCSVQVYSVQASIPKDAAVLWNAEFIQAEELFKKLSKADNCLGDNRFCGISNSFVQRVKRNEDGQPAVSATPEVKSVVGLGPTKSNVVHQPPKNIAHNSIAKVDLKTRNVEKDVKSESNGTGNAGVHDNINKPIAEKEKSLPLPAGKKKGQADKSGSVNGGSLASFWGRPSAKPKPCAVPEETSNMISKPAEVVENGQNCAHEAVLGDSDDDGNQSVALRRSSNRKRRVVFDFSDEDEDVISLASPEVPSKLSSKDSEQNDKKSLEKVALNFDLPVEIKPLVKEERVTEKKVFQPPKDLSVISKCTSTGKSSTEKLQSSAPEICVNKDSAKKVSPGSPKRRKVMKTRIDERGREVTEVVWEGEETEPKKDDKDTTKKADTVAKKADNTSTKAVNGAPATKKLPATSNTTGRGGSKKAGNIKDPKQGNILSFFKKKV*