AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629720 MtrunA17_Chr4g0006131 90.722 97 8 1 1 96 410 506 7.50e-57 182
Msa0629720 MtrunA17_Chr4g0006111 85.556 90 13 0 1 90 435 524 3.48e-50 165
Msa0629720 MtrunA17_Chr2g0301231 78.889 90 19 0 1 90 302 391 1.62e-47 155
Msa0629720 MtrunA17_Chr2g0329191 74.444 90 23 0 1 90 419 508 8.29e-45 150
Msa0629720 MtrunA17_Chr2g0329201 74.444 90 23 0 1 90 417 506 1.19e-43 147
Msa0629720 MtrunA17_Chr4g0033261 75.556 90 22 0 1 90 403 492 6.96e-43 145
Msa0629720 MtrunA17_Chr4g0033231 73.333 90 24 0 1 90 403 492 1.37e-42 144
Msa0629720 MtrunA17_Chr6g0482071 71.277 94 27 0 1 94 423 516 3.82e-42 144
Msa0629720 MtrunA17_Chr4g0033271 70.330 91 27 0 2 92 422 512 6.42e-42 143
Msa0629720 MtrunA17_Chr4g0033191 69.231 91 28 0 2 92 430 520 1.54e-41 142
Msa0629720 MtrunA17_Chr4g0033201 69.231 91 28 0 2 92 423 513 1.24e-40 139
Msa0629720 MtrunA17_Chr2g0329321 70.000 90 27 0 1 90 398 487 2.28e-40 138
Msa0629720 MtrunA17_Chr4g0033401 69.663 89 27 0 1 89 420 508 3.76e-39 135
Msa0629720 MtrunA17_Chr4g0033321 68.889 90 28 0 1 90 419 508 3.96e-39 135
Msa0629720 MtrunA17_Chr4g0033341 65.217 92 32 0 1 92 453 544 2.35e-38 134
Msa0629720 MtrunA17_Chr3g0088441 66.667 90 30 0 1 90 424 513 3.82e-38 133
Msa0629720 MtrunA17_Chr5g0430451 70.000 90 27 0 1 90 408 497 5.42e-38 132
Msa0629720 MtrunA17_Chr4g0033311 65.556 90 31 0 1 90 425 514 2.43e-37 131
Msa0629720 MtrunA17_Chr4g0033331 66.292 89 30 0 1 89 425 513 1.22e-36 129
Msa0629720 MtrunA17_Chr6g0482131 59.574 94 38 0 1 94 422 515 2.78e-36 128
Msa0629720 MtrunA17_Chr6g0482081 64.894 94 33 0 1 94 423 516 4.42e-31 114
Msa0629720 MtrunA17_Chr5g0418861 51.111 90 43 1 1 89 1 90 1.09e-28 99.0
Msa0629720 MtrunA17_Chr3g0087201 57.143 91 35 1 1 91 258 344 2.07e-27 102
Msa0629720 MtrunA17_Chr4g0043091 52.222 90 43 0 1 90 413 502 4.38e-27 102
Msa0629720 MtrunA17_Chr3g0090111 52.222 90 43 0 1 90 391 480 2.36e-26 100
Msa0629720 MtrunA17_Chr4g0010501 58.427 89 33 1 1 89 408 492 2.96e-26 100
Msa0629720 MtrunA17_Chr3g0087261 57.895 76 32 0 14 89 432 507 5.83e-25 97.1
Msa0629720 MtrunA17_Chr3g0090131 50.000 90 45 0 1 90 394 483 6.51e-25 96.7
Msa0629720 MtrunA17_Chr2g0288071 50.000 92 45 1 2 93 454 544 1.17e-24 96.3
Msa0629720 MtrunA17_Chr3g0087271 56.579 76 33 0 14 89 433 508 2.25e-23 92.4
Msa0629720 MtrunA17_Chr4g0074561 50.000 88 43 1 2 89 424 510 3.71e-23 92.0
Msa0629720 MtrunA17_Chr4g0074551 51.136 88 42 1 6 93 440 526 4.78e-23 91.7
Msa0629720 MtrunA17_Chr4g0042171 48.889 90 45 1 1 89 409 498 2.56e-22 89.4
Msa0629720 MtrunA17_Chr6g0482951 48.387 93 46 2 2 93 423 514 4.94e-21 85.9
Msa0629720 MtrunA17_Chr2g0288021 45.833 96 48 3 2 96 423 515 5.82e-21 85.5
Msa0629720 MtrunA17_Chr6g0482941 48.387 93 46 2 2 93 423 514 5.90e-21 85.5
Msa0629720 MtrunA17_Chr2g0317821 48.810 84 42 1 6 89 421 503 6.24e-20 82.8
Msa0629720 MtrunA17_Chr2g0317841 49.383 81 40 1 9 89 424 503 8.85e-19 79.3
Msa0629720 MtrunA17_Chr5g0428831 42.553 94 53 1 1 93 399 492 1.50e-18 79.0
Msa0629720 MtrunA17_Chr1g0195611 42.553 94 52 2 1 93 399 491 1.05e-17 76.3
Msa0629720 MtrunA17_Chr7g0234111 36.957 92 58 0 1 92 443 534 1.34e-17 76.3
Msa0629720 MtrunA17_Chr7g0234091 35.955 89 57 0 1 89 443 531 7.61e-17 73.9
Msa0629720 MtrunA17_Chr7g0234131 32.584 89 60 0 1 89 444 532 7.73e-16 71.2
Msa0629720 MtrunA17_Chr7g0242691 39.241 79 47 1 13 90 416 494 4.49e-15 68.9
Msa0629720 MtrunA17_Chr4g0006971 41.026 78 45 1 13 89 412 489 1.44e-14 67.4
Msa0629720 MtrunA17_Chr7g0242681 43.038 79 43 2 13 90 423 500 3.34e-14 66.6
Msa0629720 MtrunA17_Chr7g0227591 45.614 57 31 0 36 92 12 68 6.76e-14 60.8
Msa0629720 MtrunA17_Chr1g0195651 51.852 54 25 1 41 93 1 54 1.60e-13 60.1
Msa0629720 MtrunA17_Chr4g0068871 39.744 78 47 0 17 94 460 537 3.95e-13 63.5
Msa0629720 MtrunA17_Chr7g0236741 37.931 58 36 0 37 94 10 67 1.11e-12 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629720 AT5G36890.1 54.444 90 41 0 1 90 391 480 8.35e-27 102
Msa0629720 AT5G36890.2 54.444 90 41 0 1 90 391 480 8.40e-27 102
Msa0629720 AT2G44460.2 53.846 91 41 1 1 90 269 359 2.83e-26 100
Msa0629720 AT2G44450.2 56.962 79 34 0 15 93 275 353 5.26e-26 99.0
Msa0629720 AT2G44460.1 53.846 91 41 1 1 90 415 505 5.81e-26 100
Msa0629720 AT5G24540.1 56.977 86 36 1 8 92 427 512 6.79e-26 100
Msa0629720 AT5G44640.1 54.430 79 36 0 15 93 427 505 8.27e-26 99.8
Msa0629720 AT2G44450.1 56.962 79 34 0 15 93 426 504 1.74e-25 98.6
Msa0629720 AT1G61820.3 54.444 90 40 1 3 92 280 368 2.47e-25 97.4
Msa0629720 AT5G24550.1 54.651 86 38 1 8 92 427 512 3.23e-25 98.2
Msa0629720 AT3G60130.3 57.895 76 32 0 15 90 363 438 4.62e-25 97.4
Msa0629720 AT3G60130.2 57.895 76 32 0 15 90 374 449 5.41e-25 97.1
Msa0629720 AT1G61820.1 54.444 90 40 1 3 92 419 507 6.48e-25 97.1
Msa0629720 AT3G60130.1 57.895 76 32 0 15 90 426 501 7.78e-25 97.1
Msa0629720 AT5G54570.2 54.444 90 40 1 1 89 319 408 2.00e-24 95.5
Msa0629720 AT5G54570.1 54.444 90 40 1 1 89 416 505 2.30e-24 95.5
Msa0629720 AT3G18070.7 49.462 93 45 2 2 93 220 311 3.52e-24 93.2
Msa0629720 AT3G60140.1 46.316 95 50 1 1 94 413 507 3.67e-24 95.1
Msa0629720 AT3G18070.2 49.462 93 45 2 2 93 332 423 8.77e-24 93.6
Msa0629720 AT3G18070.3 49.462 93 45 2 2 93 403 494 1.09e-23 93.6
Msa0629720 AT3G18070.1 49.462 93 45 2 2 93 409 500 1.22e-23 93.6
Msa0629720 AT3G18080.1 52.174 92 42 2 2 92 420 510 1.25e-23 93.6
Msa0629720 AT3G60120.1 55.844 77 33 1 15 90 414 490 2.26e-23 92.8
Msa0629720 AT5G42260.1 56.338 71 31 0 15 85 427 497 4.88e-23 92.0
Msa0629720 AT2G25630.1 54.430 79 36 0 15 93 409 487 1.15e-22 90.9
Msa0629720 AT1G26560.1 48.889 90 45 1 1 89 417 506 1.52e-22 90.5
Msa0629720 AT1G61810.5 50.000 90 44 1 3 92 322 410 3.62e-22 89.0
Msa0629720 AT1G61810.1 50.562 89 43 1 3 91 422 509 4.55e-22 89.4
Msa0629720 AT2G44470.3 50.000 86 42 1 5 89 420 505 6.07e-22 89.0
Msa0629720 AT2G44490.1 50.667 75 36 1 16 89 418 492 8.50e-22 88.6
Msa0629720 AT2G44480.5 45.652 92 50 0 1 92 214 305 9.36e-22 87.0
Msa0629720 AT1G75940.1 55.844 77 33 1 14 89 441 517 1.30e-21 87.8
Msa0629720 AT2G44480.2 45.652 92 50 0 1 92 318 409 2.76e-21 86.7
Msa0629720 AT1G51470.1 52.632 76 36 0 14 89 434 509 3.60e-21 86.7
Msa0629720 AT2G44480.1 45.652 92 50 0 1 92 420 511 3.81e-21 86.7
Msa0629720 AT1G47600.1 52.632 76 36 0 14 89 434 509 3.97e-21 86.7
Msa0629720 AT1G47600.2 52.632 76 36 0 14 89 433 508 4.25e-21 86.3
Msa0629720 AT2G44480.3 45.652 92 50 0 1 92 451 542 4.27e-21 86.3
Msa0629720 AT4G21760.1 48.148 81 41 1 15 95 438 517 2.65e-19 81.3
Msa0629720 AT4G21760.2 48.148 81 41 1 15 95 448 527 2.77e-19 81.3
Msa0629720 AT5G28510.1 46.914 81 42 1 10 89 439 519 3.25e-19 81.3
Msa0629720 AT1G52400.3 47.436 78 40 1 14 90 439 516 3.37e-19 80.9
Msa0629720 AT1G52400.1 47.436 78 40 1 14 90 439 516 3.37e-19 80.9
Msa0629720 AT5G26000.1 50.000 80 38 2 12 89 432 511 1.05e-18 79.7
Msa0629720 AT3G21370.1 51.282 78 37 1 14 90 435 512 1.51e-18 79.3
Msa0629720 AT1G02850.5 46.154 78 41 1 14 90 432 509 5.57e-18 77.4
Msa0629720 AT1G02850.1 45.000 80 43 1 12 90 380 459 8.61e-18 77.0
Msa0629720 AT3G03640.1 49.367 79 39 1 13 90 435 513 8.84e-18 77.0
Msa0629720 AT1G02850.2 46.154 78 41 1 14 90 409 486 9.14e-18 77.0
Msa0629720 AT5G25980.2 50.633 79 37 2 13 89 444 522 1.77e-17 76.3
Msa0629720 AT2G32860.1 36.458 96 60 1 1 95 481 576 2.05e-17 75.9
Msa0629720 AT2G32860.2 36.458 96 60 1 1 95 482 577 2.14e-17 75.9
Msa0629720 AT1G61810.3 55.224 67 30 0 3 69 422 488 1.14e-16 73.9
Msa0629720 AT3G09260.1 49.296 71 35 1 23 92 443 513 2.17e-16 73.2
Msa0629720 AT1G02850.4 45.570 79 41 2 14 90 432 510 2.33e-16 72.8
Msa0629720 AT1G66280.1 48.148 81 41 1 10 89 430 510 4.60e-16 72.0
Msa0629720 AT1G66270.2 45.349 86 46 1 8 92 426 511 6.79e-16 71.6
Msa0629720 AT1G66270.1 45.349 86 46 1 8 92 428 513 6.86e-16 71.6
Msa0629720 AT4G27820.2 41.772 79 45 1 12 89 319 397 2.72e-15 69.7
Msa0629720 AT4G27820.3 41.772 79 45 1 12 89 319 397 2.72e-15 69.7
Msa0629720 AT4G27820.1 41.772 79 45 1 12 89 404 482 3.47e-15 69.7
Msa0629720 AT4G27830.1 39.241 79 47 1 12 89 406 484 5.18e-15 69.3
Msa0629720 AT3G62750.6 38.372 86 52 1 5 89 303 388 5.95e-15 68.9
Msa0629720 AT3G62750.5 38.372 86 52 1 5 89 303 388 5.95e-15 68.9
Msa0629720 AT4G27830.2 37.209 86 53 1 5 89 311 396 6.07e-15 68.9
Msa0629720 AT3G62750.1 38.372 86 52 1 5 89 388 473 6.66e-15 68.9
Msa0629720 AT3G62750.2 38.372 86 52 1 5 89 414 499 6.90e-15 68.9
Msa0629720 AT4G22100.1 40.260 77 45 1 17 92 409 485 1.68e-13 64.7
Msa0629720 AT3G06510.2 39.744 78 47 0 17 94 471 548 6.70e-13 63.2
Msa0629720 AT3G06510.1 39.744 78 47 0 17 94 437 514 7.22e-13 63.2
Msa0629720 AT1G45191.6 41.333 75 43 1 17 90 421 495 9.70e-13 62.8
Msa0629720 AT1G45191.4 41.333 75 43 1 17 90 410 484 9.87e-13 62.8
Msa0629720 AT1G45191.1 41.333 75 43 1 17 90 433 507 1.00e-12 62.8
Msa0629720 AT1G45191.2 41.333 75 43 1 17 90 416 490 1.04e-12 62.8
Msa0629720 AT1G60090.2 38.667 75 45 1 17 90 409 483 2.17e-12 61.6
Msa0629720 AT1G60090.1 38.667 75 45 1 17 90 416 490 2.22e-12 61.6

Find 116 sgRNAs with CRISPR-Local

Find 717 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTTAAATTGCCTAATT+TGG 0.070540 4_3:-10765374 Msa0629720:five_prime_UTR
CTTGAACATAATAGAATTAT+TGG 0.142938 4_3:-10756465 Msa0629720:CDS
GATATTTGCTTCCTGGAATT+TGG 0.177328 4_3:-10758002 Msa0629720:five_prime_UTR
GAGCAATCTAAGAGTCTTAT+TGG 0.216931 4_3:-10757554 Msa0629720:five_prime_UTR
CAAAGCTCACACAGTATTAT+TGG 0.252824 4_3:+10756420 None:intergenic
ACCATTATCATAACAGAAAA+TGG 0.263997 4_3:-10757091 Msa0629720:intron
GGGGAAGATCCCAATGAAAA+AGG 0.264707 4_3:+10758578 None:intergenic
GCTTTGTCAGCGAGAATATT+AGG 0.282531 4_3:-10758531 Msa0629720:intron
ATACTTTGCATGGTCCCTTT+TGG 0.290939 4_3:-10756601 Msa0629720:CDS
CAGGGTCAAAATGGTGTAAT+AGG 0.298560 4_3:-10757846 Msa0629720:five_prime_UTR
ACGAAATATCAGGGTCAAAA+TGG 0.301030 4_3:-10757855 Msa0629720:five_prime_UTR
CTTTGTGGATATTTGCTTCC+TGG 0.303992 4_3:-10758009 Msa0629720:five_prime_UTR
TACAAAACGTACCTGGTAAT+TGG 0.306037 4_3:+10764117 None:intergenic
TGTTTGTCCAAAAGGGATTC+AGG 0.306903 4_3:-10757152 Msa0629720:five_prime_UTR
ATTGTTAATGTGGCTTTATC+AGG 0.308851 4_3:-10757413 Msa0629720:intron
GACGGATACACTGTGCGTTT+TGG 0.311280 4_3:-10756561 Msa0629720:CDS
GACGCCCTTGATTTCATGTT+TGG 0.312958 4_3:-10757756 Msa0629720:five_prime_UTR
AGTAGGTCCTGAATCCCTTT+TGG 0.348435 4_3:+10757145 None:intergenic
CAAGCCTTACAAGATGATTA+TGG 0.348583 4_3:-10758556 Msa0629720:five_prime_UTR
TCTAATGGGTCAGTTGAGTA+TGG 0.348923 4_3:+10757795 None:intergenic
TGGCTATATGTTTGTCCAAA+AGG 0.350579 4_3:-10757160 Msa0629720:five_prime_UTR
AATGTATAAAACGAAATATC+AGG 0.351551 4_3:-10757865 Msa0629720:five_prime_UTR
ATAATCATCTTGTAAGGCTT+GGG 0.354884 4_3:+10758558 None:intergenic
TCTATTGAAAGCTCCAAATT+AGG 0.358105 4_3:+10765361 None:intergenic
AAATATATATACCTGGTGTA+TGG 0.360290 4_3:+10763699 None:intergenic
ATCGATGAGCTACTTAATAA+TGG 0.365239 4_3:-10758709 Msa0629720:intron
AGCTCTCTGCCCGATGGTTT+AGG 0.372347 4_3:-10756494 Msa0629720:CDS
TTAGGCAATTTAAATAGTTA+TGG 0.375617 4_3:+10765379 None:intergenic
TGATCACTATCATCGTTATA+AGG 0.379609 4_3:-10762810 Msa0629720:intron
TTGTAAAATCTAATTCCGTC+TGG 0.379933 4_3:+10758739 None:intergenic
CAATATCCTTGGCCAAGATA+TGG 0.382965 4_3:+10758883 None:intergenic
TCTGCAGCGGGCGGCGCCGA+CGG 0.383995 4_3:-10757455 Msa0629720:five_prime_UTR
AGGCAAGGTGTGAATGTAAA+AGG 0.387936 4_3:-10756624 Msa0629720:CDS
ACATAAGACACCATGCTTGC+TGG 0.388660 4_3:+10757605 None:intergenic
CTATTACTTGGCAATATCCT+TGG 0.390771 4_3:+10758872 None:intergenic
TTACTTTGTCTCCAAATTCC+AGG 0.398270 4_3:+10757991 None:intergenic
GCTGCAGAATGTAGAGGAAT+TGG 0.402462 4_3:+10757470 None:intergenic
TCCATTCAAAGTTGTCCAAA+AGG 0.405927 4_3:+10756586 None:intergenic
TATTGAATCTTAAGAATTTG+AGG 0.412118 4_3:-10763809 Msa0629720:five_prime_UTR
GTATCCATGAGCGCCTCTTC+GGG 0.415324 4_3:+10756815 None:intergenic
CATACAGATTCTCCATATCT+TGG 0.418726 4_3:-10758895 Msa0629720:five_prime_UTR
TTGCACCGTACTTGATTGAT+TGG 0.427770 4_3:+10765286 None:intergenic
CATAATCATCTTGTAAGGCT+TGG 0.430388 4_3:+10758557 None:intergenic
AGTATCCATGAGCGCCTCTT+CGG 0.431108 4_3:+10756814 None:intergenic
GGCTATATGTTTGTCCAAAA+GGG 0.435266 4_3:-10757159 Msa0629720:five_prime_UTR
AACCATCGGGCAGAGAGCTT+AGG 0.440435 4_3:+10756498 None:intergenic
GATTGCTCTTGAGTGAACTT+TGG 0.449878 4_3:+10757569 None:intergenic
TTGGAGACAAAGTAAAGCAT+TGG 0.451185 4_3:-10757983 Msa0629720:five_prime_UTR
TGGAGACAAAGTAAAGCATT+GGG 0.453879 4_3:-10757982 Msa0629720:five_prime_UTR
GCATAAATAGAGGAAATAAC+AGG 0.457668 4_3:+10764202 None:intergenic
ACCATCGGGCAGAGAGCTTA+GGG 0.457955 4_3:+10756499 None:intergenic
TTTATACAACCACTGACAAC+AGG 0.469475 4_3:-10757635 Msa0629720:five_prime_UTR
CAAAATGGTGTAATAGGCAT+TGG 0.471411 4_3:-10757840 Msa0629720:five_prime_UTR
ACCATCCAAACATGAAATCA+AGG 0.473106 4_3:+10757751 None:intergenic
AGCAAGCATGGTGTCTTATG+TGG 0.473776 4_3:-10757603 Msa0629720:five_prime_UTR
AGCAATCTAAGAGTCTTATT+GGG 0.478362 4_3:-10757553 Msa0629720:five_prime_UTR
GCCTCCATAATCATCTTGTA+AGG 0.480473 4_3:+10758552 None:intergenic
ACATGAAATCAAGGGCGTCT+TGG 0.480862 4_3:+10757760 None:intergenic
ACACTTTGAGTACATCAGAT+TGG 0.486476 4_3:-10757935 Msa0629720:five_prime_UTR
GCATTGGATTAAACTCTCAC+TGG 0.490284 4_3:-10757824 Msa0629720:five_prime_UTR
AATATATATACCTGGTGTAT+GGG 0.492563 4_3:+10763700 None:intergenic
CATGAAGACGGAAGAGGACT+TGG 0.495369 4_3:-10763740 Msa0629720:five_prime_UTR
CCAGCAGACTATGATGATAG+TGG 0.497092 4_3:-10765314 Msa0629720:five_prime_UTR
ACGGAAGAGGACTTGGTACA+TGG 0.497433 4_3:-10763733 Msa0629720:five_prime_UTR
CCATTCAAAGTTGTCCAAAA+GGG 0.499789 4_3:+10756587 None:intergenic
ATCACCCGAAGAGGCGCTCA+TGG 0.501395 4_3:-10756819 Msa0629720:CDS
CCCTTGATTTCATGTTTGGA+TGG 0.504970 4_3:-10757752 Msa0629720:intron
TGTAAAATCTAATTCCGTCT+GGG 0.505528 4_3:+10758740 None:intergenic
AGGAATTGGTTTCGTTGCAT+TGG 0.510612 4_3:+10757484 None:intergenic
AAAACTGTCAGCATAAATAG+AGG 0.516772 4_3:+10764192 None:intergenic
GTACTCAAAGTGTAAGAGAA+TGG 0.519200 4_3:+10757945 None:intergenic
AAAATAACGTTATAAAGTTG+AGG 0.524408 4_3:+10765417 None:intergenic
GACAACTTTGAATGGAATGA+CGG 0.527539 4_3:-10756579 Msa0629720:CDS
AATAACTAAACAATATGTGC+AGG 0.528909 4_3:-10757191 Msa0629720:five_prime_UTR
CATCTGCATGAGCAAGAAGT+TGG 0.530133 4_3:+10757895 None:intergenic
TACTGGCTCCTCCAATTACC+AGG 0.536244 4_3:-10764128 Msa0629720:five_prime_UTR
CCACTATCATCATAGTCTGC+TGG 0.538295 4_3:+10765314 None:intergenic
AATATGTGCAGGCTGCAACT+TGG 0.539391 4_3:-10757180 Msa0629720:five_prime_UTR
AAGAAACTTCCTAAACCATC+GGG 0.539660 4_3:+10756485 None:intergenic
CAAGAAACTTCCTAAACCAT+CGG 0.543501 4_3:+10756484 None:intergenic
ATGCAGAAGGAAAACTAAGT+GGG 0.545587 4_3:-10758771 Msa0629720:intron
GCCTCTTCGGGTGATAGTGT+TGG 0.552813 4_3:+10756827 None:intergenic
TTTCCTTTGTGTACAACAGT+AGG 0.554600 4_3:+10757128 None:intergenic
GAAATCAAGGGCGTCTTGGA+CGG 0.557749 4_3:+10757764 None:intergenic
GAAGTTGGTTGTGTGTTGAC+TGG 0.560031 4_3:+10757910 None:intergenic
ACTGCATACAGGGAAGGTAA+AGG 0.566891 4_3:-10762858 Msa0629720:intron
GATTCTCCATATCTTGGCCA+AGG 0.571513 4_3:-10758889 Msa0629720:five_prime_UTR
ATTCCTCTACATTCTGCAGC+GGG 0.574502 4_3:-10757467 Msa0629720:five_prime_UTR
GCTGTACATGAAGACGGAAG+AGG 0.576072 4_3:-10763746 Msa0629720:five_prime_UTR
ATGTATAAAACGAAATATCA+GGG 0.576545 4_3:-10757864 Msa0629720:five_prime_UTR
GATATATTTGCCCATACACC+AGG 0.579641 4_3:-10763710 Msa0629720:intron
ACAATGTTACAAAACGTACC+TGG 0.584683 4_3:+10764110 None:intergenic
AGGAGAGTATCCAGCAAGCA+TGG 0.588296 4_3:-10757615 Msa0629720:five_prime_UTR
TATGCAGAAGGAAAACTAAG+TGG 0.588404 4_3:-10758772 Msa0629720:intron
AAAACGTACCTGGTAATTGG+AGG 0.599628 4_3:+10764120 None:intergenic
CATACAGGGAAGGTAAAGGA+TGG 0.601036 4_3:-10762854 Msa0629720:intron
GGATACTCTCCTGTTGTCAG+TGG 0.601924 4_3:+10757626 None:intergenic
GCAAGCATGGTGTCTTATGT+GGG 0.610839 4_3:-10757602 Msa0629720:five_prime_UTR
TGCAGAAGGAAAACTAAGTG+GGG 0.612476 4_3:-10758770 Msa0629720:intron
CGGAAGAGGACTTGGTACAT+GGG 0.613526 4_3:-10763732 Msa0629720:five_prime_UTR
TAATCATCTTGTAAGGCTTG+GGG 0.615173 4_3:+10758559 None:intergenic
ACCCTAAGCTCTCTGCCCGA+TGG 0.617320 4_3:-10756500 Msa0629720:CDS
ATGTAAAAGGATACTTTGCA+TGG 0.622027 4_3:-10756611 Msa0629720:CDS
CCGCCCGCTGCAGAATGTAG+AGG 0.622346 4_3:+10757464 None:intergenic
TCCAACACTATCACCCGAAG+AGG 0.623179 4_3:-10756828 Msa0629720:CDS
CCTCTACATTCTGCAGCGGG+CGG 0.632639 4_3:-10757464 Msa0629720:five_prime_UTR
GCCTTACAAGATGATTATGG+AGG 0.632737 4_3:-10758553 Msa0629720:five_prime_UTR
AATTCCTCTACATTCTGCAG+CGG 0.640213 4_3:-10757468 Msa0629720:five_prime_UTR
CCATCCAAACATGAAATCAA+GGG 0.640294 4_3:+10757752 None:intergenic
GAAAACACTATTAACGCCGT+CGG 0.643210 4_3:+10757439 None:intergenic
TGCATTGGCAGCATACATGC+TGG 0.650774 4_3:+10757499 None:intergenic
GAAGGTGCTGTACATGAAGA+CGG 0.652249 4_3:-10763752 Msa0629720:five_prime_UTR
GGACCTACTGTTGTACACAA+AGG 0.659998 4_3:-10757131 Msa0629720:five_prime_UTR
AGACTATGATGATAGTGGAG+TGG 0.671245 4_3:-10765309 Msa0629720:five_prime_UTR
GCAGAAGGAAAACTAAGTGG+GGG 0.675074 4_3:-10758769 Msa0629720:intron
GTGTTGATAATGTAGTACGA+AGG 0.730862 4_3:-10763770 Msa0629720:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGCAAAAATATATTTA+AGG + chr4_3:10755933-10755952 None:intergenic 10.0%
!!! TTAAATATATTTTTGCTTTT+TGG - chr4_3:10755932-10755951 Msa0629720:intron 10.0%
!!! ATTTCTTTAATGTTTATTTT+AGG - chr4_3:10756906-10756925 Msa0629720:intron 10.0%
!!! TTTCTTTAATGTTTATTTTA+GGG - chr4_3:10756907-10756926 Msa0629720:intron 10.0%
!!! AATATATTTTTTTACACTAT+CGG + chr4_3:10758071-10758090 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTGAAAGA+AGG + chr4_3:10758356-10758375 None:intergenic 10.0%
!! AAAAAAAAAAAATCGTTATA+AGG - chr4_3:10758363-10758382 Msa0629720:intron 10.0%
!!! AAATTATTTGATTTTTTTGA+AGG + chr4_3:10758459-10758478 None:intergenic 10.0%
!!! ATTTTACTTTCTATTATATT+AGG - chr4_3:10758573-10758592 Msa0629720:five_prime_UTR 10.0%
!!! TATTTTTTCTTCTAAAATTT+GGG + chr4_3:10758888-10758907 None:intergenic 10.0%
!!! TTATTTTTTCTTCTAAAATT+TGG + chr4_3:10758889-10758908 None:intergenic 10.0%
!!! AATTCAAAGAATTTTTTTTT+GGG + chr4_3:10759987-10760006 None:intergenic 10.0%
!!! AAATTCAAAGAATTTTTTTT+TGG + chr4_3:10759988-10760007 None:intergenic 10.0%
!! AAAAAAAAATTCTTTGAATT+TGG - chr4_3:10759987-10760006 Msa0629720:intron 10.0%
!! ATAAAACAAATAAATTGATA+GGG - chr4_3:10761820-10761839 Msa0629720:intron 10.0%
!! TTCATAATAATATAAATTGA+TGG - chr4_3:10762504-10762523 Msa0629720:intron 10.0%
!! TTCTAATAAATTTAAATCAT+AGG - chr4_3:10764269-10764288 Msa0629720:intron 10.0%
!!! TTGACTATATTATTATTTTT+TGG - chr4_3:10764479-10764498 Msa0629720:intron 10.0%
!!! ATCACTTATTTTAATAAAAA+AGG + chr4_3:10764947-10764966 None:intergenic 10.0%
!! ACAATGTTGAAAAAAAAAAT+GGG + chr4_3:10756503-10756522 None:intergenic 15.0%
!! ATAAAAAAAAATACCTTGAA+AGG - chr4_3:10756635-10756654 Msa0629720:intron 15.0%
!!! TAATTAAGTTTTATTGTTCT+TGG + chr4_3:10756827-10756846 None:intergenic 15.0%
!!! TTCTTTAATGTTTATTTTAG+GGG - chr4_3:10756908-10756927 Msa0629720:intron 15.0%
!!! GGAATTAAACATAATTTTTT+TGG + chr4_3:10757124-10757143 None:intergenic 15.0%
!! AAGAAAAAAATATATATACC+TGG + chr4_3:10757449-10757468 None:intergenic 15.0%
!!! TTTATTTTTATTGCTGTATA+TGG + chr4_3:10757567-10757586 None:intergenic 15.0%
!! AAAGAGATAAAAAAAATTGA+AGG + chr4_3:10757837-10757856 None:intergenic 15.0%
!!! TTCAATTTTTTTTATCTCTT+TGG - chr4_3:10757836-10757855 Msa0629720:five_prime_UTR 15.0%
!! TATAGATTGATTATAATTGA+CGG + chr4_3:10757888-10757907 None:intergenic 15.0%
!!! AAATAATTTTAGTGATCAAA+AGG - chr4_3:10758470-10758489 Msa0629720:intron 15.0%
!!! AAAAAGTATATGACTAAAAA+TGG + chr4_3:10758633-10758652 None:intergenic 15.0%
!!! TATTTTTCATTATCTTCTTT+GGG + chr4_3:10758987-10759006 None:intergenic 15.0%
!!! ATATTTTTCATTATCTTCTT+TGG + chr4_3:10758988-10759007 None:intergenic 15.0%
!! AAGATAATGAAAAATATTCA+AGG - chr4_3:10758991-10759010 Msa0629720:intron 15.0%
!!! AAAAAGTTCAAATTTTATCT+TGG + chr4_3:10759233-10759252 None:intergenic 15.0%
!!! AAGATAAAATTTGAACTTTT+TGG - chr4_3:10759232-10759251 Msa0629720:intron 15.0%
!!! AGATAAAATTTGAACTTTTT+GGG - chr4_3:10759233-10759252 Msa0629720:intron 15.0%
!!! ATTCAAAGAATTTTTTTTTG+GGG + chr4_3:10759986-10760005 None:intergenic 15.0%
!!! TATGAAAATGTTATTTCAAA+GGG + chr4_3:10760466-10760485 None:intergenic 15.0%
!!! AATATTTTGATTCTAGTTAA+TGG + chr4_3:10760584-10760603 None:intergenic 15.0%
!!! AAAAAAATGTTTGATTTTCA+AGG + chr4_3:10760723-10760742 None:intergenic 15.0%
!!! TAAAAACAAGTGATTATTTT+TGG + chr4_3:10761778-10761797 None:intergenic 15.0%
!! GATAAAACAAATAAATTGAT+AGG - chr4_3:10761819-10761838 Msa0629720:intron 15.0%
!! ATGTTTAGTTATTGTAAAAT+GGG + chr4_3:10761861-10761880 None:intergenic 15.0%
!! TATGTTTAGTTATTGTAAAA+TGG + chr4_3:10761862-10761881 None:intergenic 15.0%
!!! TATTTCATTCTAAAAGTTTA+CGG - chr4_3:10761880-10761899 Msa0629720:intron 15.0%
!!! ATTAAACATTTTCTATTACT+TGG + chr4_3:10762281-10762300 None:intergenic 15.0%
!! GTAATAGAAAATGTTTAATT+TGG - chr4_3:10762282-10762301 Msa0629720:intron 15.0%
!! TATGATATACTAATAAAGTA+TGG + chr4_3:10762469-10762488 None:intergenic 15.0%
!! ATTCAAGAAATAATAAATTG+AGG - chr4_3:10763032-10763051 Msa0629720:intron 15.0%
!! AAATAATTTATGTCAAACAA+GGG + chr4_3:10763825-10763844 None:intergenic 15.0%
!!! TTTTGATTTAAGTAAATAGA+GGG + chr4_3:10764409-10764428 None:intergenic 15.0%
!!! ATTTTGATTTAAGTAAATAG+AGG + chr4_3:10764410-10764429 None:intergenic 15.0%
!! AAAATAACGTTATAAAGTTG+AGG + chr4_3:10755724-10755743 None:intergenic 20.0%
!! TTAGGCAATTTAAATAGTTA+TGG + chr4_3:10755762-10755781 None:intergenic 20.0%
!! ACTATTTAAATTGCCTAATT+TGG - chr4_3:10755764-10755783 Msa0629720:intron 20.0%
!! TTTATTAGAACCTCTTAAAA+AGG - chr4_3:10756263-10756282 Msa0629720:intron 20.0%
!! AAACTAAAGAAAACAAAGAA+AGG - chr4_3:10756288-10756307 Msa0629720:intron 20.0%
!! AACTAAAGAAAACAAAGAAA+GGG - chr4_3:10756289-10756308 Msa0629720:intron 20.0%
!! GACAATGTTGAAAAAAAAAA+TGG + chr4_3:10756504-10756523 None:intergenic 20.0%
!!! TTTAAGACATGTTTTTTCTT+TGG + chr4_3:10757164-10757183 None:intergenic 20.0%
!!! TCTTTTCTTATATTTTAGAC+CGG + chr4_3:10757235-10757254 None:intergenic 20.0%
!! TATTGAATCTTAAGAATTTG+AGG - chr4_3:10757329-10757348 Msa0629720:intron 20.0%
!! TAAAAAAAATTGAAGGTCTT+GGG + chr4_3:10757830-10757849 None:intergenic 20.0%
!! ATAAAAAAAATTGAAGGTCT+TGG + chr4_3:10757831-10757850 None:intergenic 20.0%
!! ATATAAATCATCTGAAAGTT+TGG + chr4_3:10757937-10757956 None:intergenic 20.0%
!! GAAATTATATATCACATTAG+AGG + chr4_3:10758391-10758410 None:intergenic 20.0%
!! GTAAAAAAAATGTATGCTAT+TGG - chr4_3:10758511-10758530 Msa0629720:intron 20.0%
!! TTTATTGCTAGAAAATTAAG+GGG + chr4_3:10758818-10758837 None:intergenic 20.0%
!! GTTTATTGCTAGAAAATTAA+GGG + chr4_3:10758819-10758838 None:intergenic 20.0%
!!! AATTTTTTAATGGATTGGAA+CGG + chr4_3:10759048-10759067 None:intergenic 20.0%
!!! TATGCAATTTTTTAATGGAT+TGG + chr4_3:10759053-10759072 None:intergenic 20.0%
!!! TTTGGTATGCAATTTTTTAA+TGG + chr4_3:10759058-10759077 None:intergenic 20.0%
!!! GATAAAATTTGAACTTTTTG+GGG - chr4_3:10759234-10759253 Msa0629720:intron 20.0%
!! GGAGAAAGATAAATTAATTT+GGG + chr4_3:10759386-10759405 None:intergenic 20.0%
!! AGGAGAAAGATAAATTAATT+TGG + chr4_3:10759387-10759406 None:intergenic 20.0%
!!! AGACCTTAAAATTTTCAATA+TGG + chr4_3:10759879-10759898 None:intergenic 20.0%
!!! GATTTTAATTAATTCGGTTT+TGG + chr4_3:10760077-10760096 None:intergenic 20.0%
!!! ATGAAAATGTTATTTCAAAG+GGG + chr4_3:10760465-10760484 None:intergenic 20.0%
!!! GTATGAAAATGTTATTTCAA+AGG + chr4_3:10760467-10760486 None:intergenic 20.0%
!! ATCAAGTGGAAATAAAAAAA+GGG + chr4_3:10760550-10760569 None:intergenic 20.0%
!!! TCAATTTTTTAAAGCGATAA+GGG + chr4_3:10761082-10761101 None:intergenic 20.0%
!!! TTCAATTTTTTAAAGCGATA+AGG + chr4_3:10761083-10761102 None:intergenic 20.0%
!!! TTATCGCTTTAAAAAATTGA+AGG - chr4_3:10761082-10761101 Msa0629720:intron 20.0%
!!! TAAAAAATTGAAGGTTCTAA+AGG - chr4_3:10761091-10761110 Msa0629720:intron 20.0%
!!! AAAAAATTGAAGGTTCTAAA+GGG - chr4_3:10761092-10761111 Msa0629720:intron 20.0%
!! ATTTATTAGAAAGTGGAATA+AGG - chr4_3:10761115-10761134 Msa0629720:intron 20.0%
!!! GATTATTTTTGGTTTCTTAT+AGG + chr4_3:10761767-10761786 None:intergenic 20.0%
!!! TAAAATGGGATTCTTTATTT+TGG + chr4_3:10761847-10761866 None:intergenic 20.0%
!! ATTCTAATGTTAGTTAGTTA+TGG + chr4_3:10762986-10763005 None:intergenic 20.0%
!!! TATATGCAGAAAAGATTTTA+AGG - chr4_3:10763105-10763124 Msa0629720:intron 20.0%
!! AATGTATAAAACGAAATATC+AGG - chr4_3:10763273-10763292 Msa0629720:intron 20.0%
!! ATGTATAAAACGAAATATCA+GGG - chr4_3:10763274-10763293 Msa0629720:intron 20.0%
!!! AATTTTATTTATCTGTTTGC+AGG - chr4_3:10763480-10763499 Msa0629720:intron 20.0%
!!! TGTTTTCAAAATTGTTAATG+TGG - chr4_3:10763715-10763734 Msa0629720:five_prime_UTR 20.0%
!! GAAATAATTTATGTCAAACA+AGG + chr4_3:10763826-10763845 None:intergenic 20.0%
!! TGTTTGACATAAATTATTTC+TGG - chr4_3:10763826-10763845 Msa0629720:five_prime_UTR 20.0%
!! CTTGAACATAATAGAATTAT+TGG - chr4_3:10764673-10764692 Msa0629720:intron 20.0%
!! TTTGAGTAAAAAAAAAGTCT+TGG - chr4_3:10765337-10765356 Msa0629720:five_prime_UTR 20.0%
!! TTCTCAATGAAGTTTTTCTA+AGG - chr4_3:10756055-10756074 Msa0629720:intron 25.0%
!! TCTCAATGAAGTTTTTCTAA+GGG - chr4_3:10756056-10756075 Msa0629720:intron 25.0%
!!! CTATTGTTCATTCTTGTTTT+CGG - chr4_3:10756158-10756177 Msa0629720:intron 25.0%
!!! TATTGTTCATTCTTGTTTTC+GGG - chr4_3:10756159-10756178 Msa0629720:intron 25.0%
!! TAAGAGGTTCTAATAAAAAG+AGG + chr4_3:10756260-10756279 None:intergenic 25.0%
!!! TTTAGTTTTGCCTTTTTAAG+AGG + chr4_3:10756276-10756295 None:intergenic 25.0%
!!! TTGAAAAAAAAAATGGGCTA+AGG + chr4_3:10756497-10756516 None:intergenic 25.0%
! ATTTGAAAATGAACCTTTCA+AGG + chr4_3:10756651-10756670 None:intergenic 25.0%
!!! TTTAATGTTTATTTTAGGGG+CGG - chr4_3:10756911-10756930 Msa0629720:intron 25.0%
!!! TATGCTTTTGCTTTTTGTAA+CGG - chr4_3:10757091-10757110 Msa0629720:intron 25.0%
! AATTCCTAATGCTATAAGAT+TGG - chr4_3:10757138-10757157 Msa0629720:five_prime_UTR 25.0%
! TTTCCATTTCTCTAAATTTC+TGG + chr4_3:10757200-10757219 None:intergenic 25.0%
!!! ATGGAAAGTAATACTTTTTC+CGG - chr4_3:10757213-10757232 Msa0629720:intron 25.0%
! AATATATATACCTGGTGTAT+GGG + chr4_3:10757441-10757460 None:intergenic 25.0%
! AAATATATATACCTGGTGTA+TGG + chr4_3:10757442-10757461 None:intergenic 25.0%
!! ATTTTTATTGCTGTATATGG+TGG + chr4_3:10757564-10757583 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG + chr4_3:10757677-10757696 None:intergenic 25.0%
! GTATGAGTAGTTCAATTATA+GGG + chr4_3:10757866-10757885 None:intergenic 25.0%
!! TCTTTTCTTCAATATCTAAC+AGG + chr4_3:10758153-10758172 None:intergenic 25.0%
! GACTAAAATGATTTGATCTA+CGG + chr4_3:10758437-10758456 None:intergenic 25.0%
!!! GGTTTTTTTTCCTTTCTTAA+GGG + chr4_3:10758738-10758757 None:intergenic 25.0%
! GGTTTATTGCTAGAAAATTA+AGG + chr4_3:10758820-10758839 None:intergenic 25.0%
! ATGAACAGTTTGGAAAATTT+GGG + chr4_3:10758927-10758946 None:intergenic 25.0%
! GGATAAAAAAACACCTAAAA+GGG + chr4_3:10758966-10758985 None:intergenic 25.0%
!!! ATTTTTTAATGGATTGGAAC+GGG + chr4_3:10759047-10759066 None:intergenic 25.0%
!!! TCTTTATATGTCACTTTTAG+TGG + chr4_3:10759332-10759351 None:intergenic 25.0%
! CTTGGAAAATTGGATAATAA+AGG - chr4_3:10759571-10759590 Msa0629720:intron 25.0%
! ATTATCAAACATGTGGAAAT+TGG + chr4_3:10759766-10759785 None:intergenic 25.0%
! AATTGTGATTATCAAACATG+TGG + chr4_3:10759773-10759792 None:intergenic 25.0%
!! GAGCCATATTGAAAATTTTA+AGG - chr4_3:10759873-10759892 Msa0629720:intron 25.0%
! TTTGAAGAAGAAGAATACTT+GGG + chr4_3:10759955-10759974 None:intergenic 25.0%
! AGAAAAGAAAGGAAGAAAAT+TGG - chr4_3:10760043-10760062 Msa0629720:intron 25.0%
!!! GAGGGTGATTTTAATTAATT+CGG + chr4_3:10760083-10760102 None:intergenic 25.0%
!! ACTTTTCTTAAGTGTAAAGT+AGG + chr4_3:10760238-10760257 None:intergenic 25.0%
! TACTTTACACTTAAGAAAAG+TGG - chr4_3:10760237-10760256 Msa0629720:intron 25.0%
!! CGAAAAGTCAAATTTTCTAA+AGG + chr4_3:10760308-10760327 None:intergenic 25.0%
!!! TGAATTTTTTTGGTGTATGA+AGG + chr4_3:10760363-10760382 None:intergenic 25.0%
! ATAAAAAAAGGGCTTAAACA+AGG + chr4_3:10760539-10760558 None:intergenic 25.0%
! GATCAAGTGGAAATAAAAAA+AGG + chr4_3:10760551-10760570 None:intergenic 25.0%
!!! TTTGTGACAAATGGATTAAT+TGG + chr4_3:10760631-10760650 None:intergenic 25.0%
!!! TTTTGAAAAGGCATATGATA+TGG + chr4_3:10760696-10760715 None:intergenic 25.0%
!!! AAAATGTTTGATTTTCAAGG+TGG + chr4_3:10760720-10760739 None:intergenic 25.0%
! CATTATAAATCCTAACCAAT+CGG + chr4_3:10760818-10760837 None:intergenic 25.0%
! AAGTCTCCTTCAAAAAAAAA+GGG + chr4_3:10761051-10761070 None:intergenic 25.0%
!!! CAATTTTTTAAAGCGATAAG+GGG + chr4_3:10761081-10761100 None:intergenic 25.0%
! TAAAGGGATTTATTAGAAAG+TGG - chr4_3:10761108-10761127 Msa0629720:intron 25.0%
! AATCAAAATTCACCAATCTT+TGG - chr4_3:10761249-10761268 Msa0629720:intron 25.0%
! ATCAAAATTCACCAATCTTT+GGG - chr4_3:10761250-10761269 Msa0629720:intron 25.0%
!! AACTTTTCTCTTATATTCAC+TGG - chr4_3:10761474-10761493 Msa0629720:intron 25.0%
!! ACTTTTCTCTTATATTCACT+GGG - chr4_3:10761475-10761494 Msa0629720:intron 25.0%
! TCGAATATGATTAAGTAGAA+TGG - chr4_3:10761735-10761754 Msa0629720:intron 25.0%
! TGTAAAATTTACGAGAACAA+GGG + chr4_3:10761910-10761929 None:intergenic 25.0%
! ATGTAAAATTTACGAGAACA+AGG + chr4_3:10761911-10761930 None:intergenic 25.0%
!! TTGTAGTATTTTACATGAAG+TGG - chr4_3:10761978-10761997 Msa0629720:intron 25.0%
!!! AACCATTTTTACATCTTAAC+AGG - chr4_3:10762184-10762203 Msa0629720:intron 25.0%
! TTCCTGTTAAGATGTAAAAA+TGG + chr4_3:10762189-10762208 None:intergenic 25.0%
! TAACTAACTAGTTAGTTAGT+TGG + chr4_3:10762920-10762939 None:intergenic 25.0%
! ATAAATCCAACTATGTTTGT+TGG + chr4_3:10762963-10762982 None:intergenic 25.0%
!!! AAAAGATTTTAAGGACTTTG+TGG - chr4_3:10763114-10763133 Msa0629720:intron 25.0%
!! ATTGGGTCATATGATTTTAT+TGG - chr4_3:10763602-10763621 Msa0629720:intron 25.0%
! AATAAAGAAGGGATATACAT+TGG - chr4_3:10763869-10763888 Msa0629720:intron 25.0%
! AATAACTAAACAATATGTGC+AGG - chr4_3:10763947-10763966 Msa0629720:intron 25.0%
!!! TTTTCTGTTATGATAATGGT+AGG + chr4_3:10764047-10764066 None:intergenic 25.0%
! ACCATTATCATAACAGAAAA+TGG - chr4_3:10764047-10764066 Msa0629720:intron 25.0%
!! ACCATTTTCTGTTATGATAA+TGG + chr4_3:10764051-10764070 None:intergenic 25.0%
! ATACATTGTGAGAGAATATT+AGG + chr4_3:10764205-10764224 None:intergenic 25.0%
! GTTTATAAGACACTGAAAAA+AGG + chr4_3:10764236-10764255 None:intergenic 25.0%
!! ATTATCTTTTATCTGCAATG+AGG - chr4_3:10764378-10764397 Msa0629720:intron 25.0%
!!! TTTTTTGGTTTTTTGTGTGA+AGG - chr4_3:10764494-10764513 Msa0629720:intron 25.0%
! TATGACTATATTAAAGTCTC+CGG + chr4_3:10765176-10765195 None:intergenic 25.0%
! TTTAATATAGTCATACGTGT+AGG - chr4_3:10765181-10765200 Msa0629720:intron 25.0%
!! TCATGTTCTGTTTTGTAATA+AGG - chr4_3:10765444-10765463 Msa0629720:five_prime_UTR 25.0%
TCTATTGAAAGCTCCAAATT+AGG + chr4_3:10755780-10755799 None:intergenic 30.0%
CTTCATTGAGAAGAATTTGA+AGG + chr4_3:10756047-10756066 None:intergenic 30.0%
AGTATCACATAGATTCTTGA+AGG + chr4_3:10756108-10756127 None:intergenic 30.0%
!!! ATTGTTCATTCTTGTTTTCG+GGG - chr4_3:10756160-10756179 Msa0629720:intron 30.0%
CGAAAGGAAAAATAGAACAT+TGG + chr4_3:10756556-10756575 None:intergenic 30.0%
ATCTTAGTGATAAGTGATCA+TGG + chr4_3:10756680-10756699 None:intergenic 30.0%
!! TTACTTTTCAAGATTCACGT+GGG + chr4_3:10756789-10756808 None:intergenic 30.0%
!! ATTACTTTTCAAGATTCACG+TGG + chr4_3:10756790-10756809 None:intergenic 30.0%
!!! TTAATGTTTATTTTAGGGGC+GGG - chr4_3:10756912-10756931 Msa0629720:intron 30.0%
GCATAAATAGAGGAAATAAC+AGG + chr4_3:10756939-10756958 None:intergenic 30.0%
AAAACTGTCAGCATAAATAG+AGG + chr4_3:10756949-10756968 None:intergenic 30.0%
AGTCCAGAAATTTAGAGAAA+TGG - chr4_3:10757194-10757213 Msa0629720:five_prime_UTR 30.0%
!!! TCTTGCCTTAGGAATTTTTT+TGG - chr4_3:10757626-10757645 Msa0629720:five_prime_UTR 30.0%
TGCATAATATATACAAGGTC+CGG + chr4_3:10757672-10757691 None:intergenic 30.0%
GGTATGAGTAGTTCAATTAT+AGG + chr4_3:10757867-10757886 None:intergenic 30.0%
AGAGTTTATAGACAAGTCAT+AGG - chr4_3:10757992-10758011 Msa0629720:five_prime_UTR 30.0%
TAATTGTTGTAACTGCATAC+AGG - chr4_3:10758269-10758288 Msa0629720:intron 30.0%
AATTGTTGTAACTGCATACA+GGG - chr4_3:10758270-10758289 Msa0629720:intron 30.0%
TGATCACTATCATCGTTATA+AGG - chr4_3:10758328-10758347 Msa0629720:intron 30.0%
! TAGATAATGAGAGAAGTACA+TGG - chr4_3:10758670-10758689 Msa0629720:intron 30.0%
!!! TTGTACTTTTTCCGATTTGT+GGG + chr4_3:10758705-10758724 None:intergenic 30.0%
! ACAAATCGGAAAAAGTACAA+GGG - chr4_3:10758705-10758724 Msa0629720:intron 30.0%
!!! GGGTTTTTTTTCCTTTCTTA+AGG + chr4_3:10758739-10758758 None:intergenic 30.0%
CATGAACAGTTTGGAAAATT+TGG + chr4_3:10758928-10758947 None:intergenic 30.0%
TAAAAGGGCTTACTTTCATT+TGG + chr4_3:10758951-10758970 None:intergenic 30.0%
! AAATGAAAGTAAGCCCTTTT+AGG - chr4_3:10758950-10758969 Msa0629720:intron 30.0%
GGGATAAAAAAACACCTAAA+AGG + chr4_3:10758967-10758986 None:intergenic 30.0%
!!! TTTTTTAATGGATTGGAACG+GGG + chr4_3:10759046-10759065 None:intergenic 30.0%
!!! TTTTGTAGATGTAGCTTTGT+TGG + chr4_3:10759086-10759105 None:intergenic 30.0%
CTACTCTACTTGAGTTAAAA+AGG + chr4_3:10759407-10759426 None:intergenic 30.0%
AGAAAAGAGTCTTGGAAAAT+TGG - chr4_3:10759561-10759580 Msa0629720:intron 30.0%
!! GAAGAAAAGTATTGGTAATG+GGG + chr4_3:10759639-10759658 None:intergenic 30.0%
!! CGAAGAAAAGTATTGGTAAT+GGG + chr4_3:10759640-10759659 None:intergenic 30.0%
TGGAAATTGGCAAAATATGT+TGG + chr4_3:10759753-10759772 None:intergenic 30.0%
! GTATTGATGGCAAAATATGT+TGG + chr4_3:10759797-10759816 None:intergenic 30.0%
TTTGTGGAAAGATGTATTGA+TGG + chr4_3:10759810-10759829 None:intergenic 30.0%
! CTTTGAAGAAGAAGAATACT+TGG + chr4_3:10759956-10759975 None:intergenic 30.0%
TAACAAAGTTTGGAAGTTGA+TGG + chr4_3:10760014-10760033 None:intergenic 30.0%
ATCAACTTCCAAACTTTGTT+AGG - chr4_3:10760013-10760032 Msa0629720:intron 30.0%
! TTTTCCAAAGCATGTATTAC+CGG - chr4_3:10760145-10760164 Msa0629720:intron 30.0%
! TTTCCATGTATCAAGACTTT+TGG - chr4_3:10760168-10760187 Msa0629720:intron 30.0%
! TTCCATGTATCAAGACTTTT+GGG - chr4_3:10760169-10760188 Msa0629720:intron 30.0%
! TTTTACTTACCTTTGGTTGA+CGG + chr4_3:10760206-10760225 None:intergenic 30.0%
TCAACCAAAGGTAAGTAAAA+GGG - chr4_3:10760206-10760225 Msa0629720:intron 30.0%
GTTGAAGACTCTTATAATTC+CGG + chr4_3:10760266-10760285 None:intergenic 30.0%
! TTTCTAAAGGTAGCTTGATA+GGG + chr4_3:10760295-10760314 None:intergenic 30.0%
!! TTTTCTAAAGGTAGCTTGAT+AGG + chr4_3:10760296-10760315 None:intergenic 30.0%
! TAGATGGTTCCATTTGATTT+CGG + chr4_3:10760333-10760352 None:intergenic 30.0%
AAATCAAATGGAACCATCTA+AGG - chr4_3:10760333-10760352 Msa0629720:intron 30.0%
!!! AGGCTTGTGTTGAATTTTTT+TGG + chr4_3:10760373-10760392 None:intergenic 30.0%
! ACTAGTAAATAGAGCATCAT+CGG - chr4_3:10760394-10760413 Msa0629720:intron 30.0%
TAAGGTTGAAAAATTGGATG+TGG + chr4_3:10760441-10760460 None:intergenic 30.0%
!! ATGTTATTTCAAAGGGGTTA+AGG + chr4_3:10760459-10760478 None:intergenic 30.0%
!! ATTAAAGCTTGTGTTTTTGC+GGG + chr4_3:10760608-10760627 None:intergenic 30.0%
!! GATTAAAGCTTGTGTTTTTG+CGG + chr4_3:10760609-10760628 None:intergenic 30.0%
!! TTTCAAGGTGGATTTTGAAA+AGG + chr4_3:10760708-10760727 None:intergenic 30.0%
! CGATTGGTTAGGATTTATAA+TGG - chr4_3:10760816-10760835 Msa0629720:intron 30.0%
AAATAAGAAGAGAAACCTCT+TGG - chr4_3:10760966-10760985 Msa0629720:intron 30.0%
!!! GAATACCCCTTTTTTTTTGA+AGG - chr4_3:10761042-10761061 Msa0629720:intron 30.0%
AGTCTCCTTCAAAAAAAAAG+GGG + chr4_3:10761050-10761069 None:intergenic 30.0%
GAAGTCTCCTTCAAAAAAAA+AGG + chr4_3:10761052-10761071 None:intergenic 30.0%
TATTAGAAAGTGGAATAAGG+AGG - chr4_3:10761118-10761137 Msa0629720:intron 30.0%
GAAAATCAAAGGGTTAATTG+TGG - chr4_3:10761160-10761179 Msa0629720:intron 30.0%
ATGTGAAGAATAAAGCCTTT+CGG - chr4_3:10761205-10761224 Msa0629720:intron 30.0%
TCAAAATTCACCAATCTTTG+GGG - chr4_3:10761251-10761270 Msa0629720:intron 30.0%
CACTACATTTACTCTTCAAA+AGG + chr4_3:10761277-10761296 None:intergenic 30.0%
TTTGAGAGCTAAGATTGTAT+TGG + chr4_3:10761390-10761409 None:intergenic 30.0%
! ACAATCTTAGCTCTCAAAAT+TGG - chr4_3:10761392-10761411 Msa0629720:intron 30.0%
AACTCCAATTCATCCAAATT+AGG + chr4_3:10761506-10761525 None:intergenic 30.0%
TTGGAGTTCCTTTCATTAAA+AGG - chr4_3:10761518-10761537 Msa0629720:intron 30.0%
TGGAGTTCCTTTCATTAAAA+GGG - chr4_3:10761519-10761538 Msa0629720:intron 30.0%
ACAAAATTATATCTCTCGCA+TGG + chr4_3:10761962-10761981 None:intergenic 30.0%
GTTAGAGTTGTTAATGCATA+TGG + chr4_3:10762343-10762362 None:intergenic 30.0%
AACTCTAACAAATATGCAGA+AGG - chr4_3:10762354-10762373 Msa0629720:intron 30.0%
TGTAAAATCTAATTCCGTCT+GGG + chr4_3:10762401-10762420 None:intergenic 30.0%
TTGTAAAATCTAATTCCGTC+TGG + chr4_3:10762402-10762421 None:intergenic 30.0%
ATCGATGAGCTACTTAATAA+TGG - chr4_3:10762429-10762448 Msa0629720:intron 30.0%
ATTGATGGAATTATTGATCC+AGG - chr4_3:10762519-10762538 Msa0629720:intron 30.0%
!! ATATGTGACCCTTTTTCATT+GGG - chr4_3:10762551-10762570 Msa0629720:intron 30.0%
ATAATCATCTTGTAAGGCTT+GGG + chr4_3:10762583-10762602 None:intergenic 30.0%
! CGAGAAAGATTAGAATGTTT+TGG - chr4_3:10762676-10762695 Msa0629720:intron 30.0%
TGTAGAGATCATTCTAATCT+CGG + chr4_3:10762740-10762759 None:intergenic 30.0%
!! AGCAATCTAAGAGTCTTATT+GGG - chr4_3:10763585-10763604 Msa0629720:intron 30.0%
!! ATTGTTAATGTGGCTTTATC+AGG - chr4_3:10763725-10763744 Msa0629720:five_prime_UTR 30.0%
TGATTTATGCCATCTTCATT+AGG + chr4_3:10763773-10763792 None:intergenic 30.0%
ATGACAGATGTGAATAAAGA+AGG - chr4_3:10763857-10763876 Msa0629720:intron 30.0%
TGACAGATGTGAATAAAGAA+GGG - chr4_3:10763858-10763877 Msa0629720:intron 30.0%
ATGTAAAAGGATACTTTGCA+TGG - chr4_3:10764527-10764546 Msa0629720:intron 30.0%
! AGAAGAAGAAACTAGAGTTT+TGG + chr4_3:10764850-10764869 None:intergenic 30.0%
AAGAGAAAAACGAGATACAA+GGG + chr4_3:10764923-10764942 None:intergenic 30.0%
AAAGAGAAAAACGAGATACA+AGG + chr4_3:10764924-10764943 None:intergenic 30.0%
!! TGGTCTCTTTCTTTTTGAAG+GGG + chr4_3:10755807-10755826 None:intergenic 35.0%
! CTGGTCTCTTTCTTTTTGAA+GGG + chr4_3:10755808-10755827 None:intergenic 35.0%
TTGACCAAAATTCTCCTCAA+TGG - chr4_3:10756004-10756023 Msa0629720:intron 35.0%
! AACTCCATTGAGGAGAATTT+TGG + chr4_3:10756011-10756030 None:intergenic 35.0%
! TCCTCAATGGAGTTTTCTAA+GGG - chr4_3:10756017-10756036 Msa0629720:intron 35.0%
CATTGAGAAGAATTTGAAGG+TGG + chr4_3:10756044-10756063 None:intergenic 35.0%
! GTGGACAAAGTATCTAATCA+TGG - chr4_3:10756197-10756216 Msa0629720:intron 35.0%
CGAACATGAGGATTTCTTTA+GGG - chr4_3:10756333-10756352 Msa0629720:intron 35.0%
!!! TGAGGATTTCTTTAGGGTTT+TGG - chr4_3:10756339-10756358 Msa0629720:intron 35.0%
AATAACTCCTCGATAGAATG+GGG + chr4_3:10756583-10756602 None:intergenic 35.0%
CAATAACTCCTCGATAGAAT+GGG + chr4_3:10756584-10756603 None:intergenic 35.0%
TTAGTGATAAGTGATCATGG+AGG + chr4_3:10756677-10756696 None:intergenic 35.0%
!!! CTGACAGTTTTGAGCTAAAT+CGG - chr4_3:10756958-10756977 Msa0629720:intron 35.0%
!!! TTTCCGGAAGGTTTTGTTTT+TGG - chr4_3:10756987-10757006 Msa0629720:intron 35.0%
GTACCAAAAACAAAACCTTC+CGG + chr4_3:10756993-10757012 None:intergenic 35.0%
!!! GAAGGTTTTGTTTTTGGTAC+TGG - chr4_3:10756993-10757012 Msa0629720:intron 35.0%
TACAAAACGTACCTGGTAAT+TGG + chr4_3:10757024-10757043 None:intergenic 35.0%
ACAATGTTACAAAACGTACC+TGG + chr4_3:10757031-10757050 None:intergenic 35.0%
TGTGTATGTTACTATGCATG+TGG - chr4_3:10757048-10757067 Msa0629720:intron 35.0%
TTGGCCAATCTTATAGCATT+AGG + chr4_3:10757145-10757164 None:intergenic 35.0%
!! GTGTTGATAATGTAGTACGA+AGG - chr4_3:10757368-10757387 Msa0629720:intron 35.0%
! CTATCCACTATCTAGGTTTT+TGG + chr4_3:10757503-10757522 None:intergenic 35.0%
!! CAAAAACCTAGATAGTGGAT+AGG - chr4_3:10757501-10757520 Msa0629720:five_prime_UTR 35.0%
! TGCTGTATATGGTGGTTTTT+AGG + chr4_3:10757556-10757575 None:intergenic 35.0%
TTCATGTAGCTTTCTCTATG+TGG + chr4_3:10757602-10757621 None:intergenic 35.0%
ACATGAACATATCTTGCCTT+AGG - chr4_3:10757615-10757634 Msa0629720:five_prime_UTR 35.0%
!!! TGCCTTAGGAATTTTTTTGG+TGG - chr4_3:10757629-10757648 Msa0629720:five_prime_UTR 35.0%
CACCACCAAAAAAATTCCTA+AGG + chr4_3:10757634-10757653 None:intergenic 35.0%
!!! CTTAGGAATTTTTTTGGTGG+TGG - chr4_3:10757632-10757651 Msa0629720:five_prime_UTR 35.0%
CATAATATATACAAGGTCCG+GGG + chr4_3:10757670-10757689 None:intergenic 35.0%
GCATAATATATACAAGGTCC+GGG + chr4_3:10757671-10757690 None:intergenic 35.0%
! GGAGTATTTAACCCACAAAT+CGG - chr4_3:10758691-10758710 Msa0629720:intron 35.0%
!!! CTTGTACTTTTTCCGATTTG+TGG + chr4_3:10758706-10758725 None:intergenic 35.0%
! CACAAATCGGAAAAAGTACA+AGG - chr4_3:10758704-10758723 Msa0629720:intron 35.0%
ACTTTGTCTTGACTCTTGTT+GGG + chr4_3:10758759-10758778 None:intergenic 35.0%
AACCATTCGTAAGACAAACA+AGG - chr4_3:10758791-10758810 Msa0629720:intron 35.0%
!! TTCTTCTAAAATTTGGGAGC+CGG + chr4_3:10758882-10758901 None:intergenic 35.0%
AAATTTGGGAAGCTCAGAAT+GGG + chr4_3:10758913-10758932 None:intergenic 35.0%
AAAATTTGGGAAGCTCAGAA+TGG + chr4_3:10758914-10758933 None:intergenic 35.0%
TTCATTTGGCATGAACAGTT+TGG + chr4_3:10758937-10758956 None:intergenic 35.0%
CGCTCAAATTTATCTCGTAT+AGG + chr4_3:10759183-10759202 None:intergenic 35.0%
CGAGATAAATTTGAGCGAAT+AGG - chr4_3:10759186-10759205 Msa0629720:intron 35.0%
AAGGGAAGAACAATTGTTTG+GGG + chr4_3:10759446-10759465 None:intergenic 35.0%
GAAGGGAAGAACAATTGTTT+GGG + chr4_3:10759447-10759466 None:intergenic 35.0%
! AACAACAAGGTTAGCCAAAT+GGG + chr4_3:10759526-10759545 None:intergenic 35.0%
!!! AACCTTGTTGTTCTTTTGAG+TGG - chr4_3:10759534-10759553 Msa0629720:intron 35.0%
ATCCACTCAAAAGAACAACA+AGG + chr4_3:10759539-10759558 None:intergenic 35.0%
GTGGATAAAGAAAAGAGTCT+TGG - chr4_3:10759553-10759572 Msa0629720:intron 35.0%
!! GCGAAGAAAAGTATTGGTAA+TGG + chr4_3:10759641-10759660 None:intergenic 35.0%
! GAGTTTGCGAAGAAAAGTAT+TGG + chr4_3:10759647-10759666 None:intergenic 35.0%
!!! AAACGTCCAAGATTGGTTTT+GGG + chr4_3:10759669-10759688 None:intergenic 35.0%
!!! AAAACGTCCAAGATTGGTTT+TGG + chr4_3:10759670-10759689 None:intergenic 35.0%
ACATGAATCCTTCTACCAAA+GGG - chr4_3:10759709-10759728 Msa0629720:intron 35.0%
! TTTTCAAACATCCATCCCTT+TGG + chr4_3:10759727-10759746 None:intergenic 35.0%
! TAAGTGATGACAAGGTTTTG+TGG + chr4_3:10759826-10759845 None:intergenic 35.0%
GTGATTGTTAAGTGATGACA+AGG + chr4_3:10759834-10759853 None:intergenic 35.0%
ATTTGTAGACCAAAGGATGA+GGG + chr4_3:10759917-10759936 None:intergenic 35.0%
AATTTGTAGACCAAAGGATG+AGG + chr4_3:10759918-10759937 None:intergenic 35.0%
TCAAGATGCCTAACAAAGTT+TGG + chr4_3:10760024-10760043 None:intergenic 35.0%
TAGGCATCTTGAGAAAAGAA+AGG - chr4_3:10760032-10760051 Msa0629720:intron 35.0%
! CTTTGGAAAAAAAGCTTGGT+GGG + chr4_3:10760135-10760154 None:intergenic 35.0%
!! CATGCTTTGGAAAAAAAGCT+TGG + chr4_3:10760139-10760158 None:intergenic 35.0%
AAGTCTTGATACATGGAAAC+CGG + chr4_3:10760167-10760186 None:intergenic 35.0%
ATCCCAAAAGTCTTGATACA+TGG + chr4_3:10760174-10760193 None:intergenic 35.0%
GTCAACCAAAGGTAAGTAAA+AGG - chr4_3:10760205-10760224 Msa0629720:intron 35.0%
! TTCTAAAGGTAGCTTGATAG+GGG + chr4_3:10760294-10760313 None:intergenic 35.0%
! AGATGGTTCCATTTGATTTC+GGG + chr4_3:10760332-10760351 None:intergenic 35.0%
TGATGCTCTATTTACTAGTG+AGG + chr4_3:10760393-10760412 None:intergenic 35.0%
AGGGGTTAAGGTTGAAAAAT+TGG + chr4_3:10760447-10760466 None:intergenic 35.0%
TCTAGTTAATGGTTGCTCAA+CGG + chr4_3:10760573-10760592 None:intergenic 35.0%
GATTTGGACTTTGTGACAAA+TGG + chr4_3:10760640-10760659 None:intergenic 35.0%
TTCTTGGAGTACATGATGTA+GGG + chr4_3:10760662-10760681 None:intergenic 35.0%
! TATGGTAAGTTGGAAGTTCT+TGG + chr4_3:10760678-10760697 None:intergenic 35.0%
AGGCATATGATATGGTAAGT+TGG + chr4_3:10760688-10760707 None:intergenic 35.0%
ACACTTTCGAGAAGAGAAAT+TGG - chr4_3:10760892-10760911 Msa0629720:intron 35.0%
TTTCGAGAAGAGAAATTGGT+CGG - chr4_3:10760896-10760915 Msa0629720:intron 35.0%
!! AAAAAGGGGTATTCTGAAGT+CGG + chr4_3:10761036-10761055 None:intergenic 35.0%
AAGTGGAATAAGGAGGTTTA+TGG - chr4_3:10761125-10761144 Msa0629720:intron 35.0%
AGTGGAATAAGGAGGTTTAT+GGG - chr4_3:10761126-10761145 Msa0629720:intron 35.0%
ATAAAGCCTTTCGGATAATG+AGG - chr4_3:10761214-10761233 Msa0629720:intron 35.0%
TCCATGCTTGCATTAATCAT+AGG - chr4_3:10761357-10761376 Msa0629720:intron 35.0%
TCCTATGATTAATGCAAGCA+TGG + chr4_3:10761361-10761380 None:intergenic 35.0%
CTCTCAAAATTGGTCATTCT+TGG - chr4_3:10761402-10761421 Msa0629720:intron 35.0%
CATGCCTAATTTGGATGAAT+TGG - chr4_3:10761499-10761518 Msa0629720:intron 35.0%
GGAGTTCCTTTCATTAAAAG+GGG - chr4_3:10761520-10761539 Msa0629720:intron 35.0%
! TTTGCTCCCCTTTTAATGAA+AGG + chr4_3:10761529-10761548 None:intergenic 35.0%
!! CATGAAGTGGACTTTTACAT+CGG - chr4_3:10761991-10762010 Msa0629720:intron 35.0%
CATACAGATTCTCCATATCT+TGG - chr4_3:10762243-10762262 Msa0629720:intron 35.0%
CTATTACTTGGCAATATCCT+TGG + chr4_3:10762269-10762288 None:intergenic 35.0%
TATGCAGAAGGAAAACTAAG+TGG - chr4_3:10762366-10762385 Msa0629720:intron 35.0%
ATGCAGAAGGAAAACTAAGT+GGG - chr4_3:10762367-10762386 Msa0629720:intron 35.0%
CAATGAAAAAGGGTCACATA+TGG + chr4_3:10762552-10762571 None:intergenic 35.0%
!! CATATGTGACCCTTTTTCAT+TGG - chr4_3:10762550-10762569 Msa0629720:intron 35.0%
TAATCATCTTGTAAGGCTTG+GGG + chr4_3:10762582-10762601 None:intergenic 35.0%
CATAATCATCTTGTAAGGCT+TGG + chr4_3:10762584-10762603 None:intergenic 35.0%
CAAGCCTTACAAGATGATTA+TGG - chr4_3:10762582-10762601 Msa0629720:intron 35.0%
CTAGTTAGTTAGTTGGTTAG+TGG + chr4_3:10762913-10762932 None:intergenic 35.0%
! AACTATGTTTGTTGGTTGGT+TGG + chr4_3:10762955-10762974 None:intergenic 35.0%
AACCAACCAACAAACATAGT+TGG - chr4_3:10762954-10762973 Msa0629720:intron 35.0%
! ATCCAACTATGTTTGTTGGT+TGG + chr4_3:10762959-10762978 None:intergenic 35.0%
GATATTTGCTTCCTGGAATT+TGG - chr4_3:10763136-10763155 Msa0629720:intron 35.0%
TTACTTTGTCTCCAAATTCC+AGG + chr4_3:10763150-10763169 None:intergenic 35.0%
TTGGAGACAAAGTAAAGCAT+TGG - chr4_3:10763155-10763174 Msa0629720:intron 35.0%
! TGGAGACAAAGTAAAGCATT+GGG - chr4_3:10763156-10763175 Msa0629720:intron 35.0%
GTACTCAAAGTGTAAGAGAA+TGG + chr4_3:10763196-10763215 None:intergenic 35.0%
ACACTTTGAGTACATCAGAT+TGG - chr4_3:10763203-10763222 Msa0629720:intron 35.0%
ACGAAATATCAGGGTCAAAA+TGG - chr4_3:10763283-10763302 Msa0629720:intron 35.0%
CAAAATGGTGTAATAGGCAT+TGG - chr4_3:10763298-10763317 Msa0629720:intron 35.0%
CCATCCAAACATGAAATCAA+GGG + chr4_3:10763389-10763408 None:intergenic 35.0%
ACCATCCAAACATGAAATCA+AGG + chr4_3:10763390-10763409 None:intergenic 35.0%
ATCCATGGTTGTTGTAGAAA+CGG + chr4_3:10763431-10763450 None:intergenic 35.0%
TTTATACAACCACTGACAAC+AGG - chr4_3:10763503-10763522 Msa0629720:intron 35.0%
! GAGCAATCTAAGAGTCTTAT+TGG - chr4_3:10763584-10763603 Msa0629720:intron 35.0%
TGGCTATATGTTTGTCCAAA+AGG - chr4_3:10763978-10763997 Msa0629720:intron 35.0%
GGCTATATGTTTGTCCAAAA+GGG - chr4_3:10763979-10763998 Msa0629720:intron 35.0%
TTTCCTTTGTGTACAACAGT+AGG + chr4_3:10764013-10764032 None:intergenic 35.0%
CCATTCAAAGTTGTCCAAAA+GGG + chr4_3:10764554-10764573 None:intergenic 35.0%
TCCATTCAAAGTTGTCCAAA+AGG + chr4_3:10764555-10764574 None:intergenic 35.0%
GACAACTTTGAATGGAATGA+CGG - chr4_3:10764559-10764578 Msa0629720:intron 35.0%
AAGAAACTTCCTAAACCATC+GGG + chr4_3:10764656-10764675 None:intergenic 35.0%
CAAGAAACTTCCTAAACCAT+CGG + chr4_3:10764657-10764676 None:intergenic 35.0%
CAAAGCTCACACAGTATTAT+TGG + chr4_3:10764721-10764740 None:intergenic 35.0%
!! AGAAACTAGAGTTTTGGTGA+CGG + chr4_3:10764844-10764863 None:intergenic 35.0%
TTCTTCTTCGCCAATAAAGA+GGG - chr4_3:10764863-10764882 Msa0629720:intron 35.0%
TTAAATCACCCCCTCTTTAT+TGG + chr4_3:10764876-10764895 None:intergenic 35.0%
AATAAAGAGGGGGTGATTTA+AGG - chr4_3:10764875-10764894 Msa0629720:intron 35.0%
AGAGAAAAACGAGATACAAG+GGG + chr4_3:10764922-10764941 None:intergenic 35.0%
! GTCATTGATTGAATCTGCAT+TGG + chr4_3:10765112-10765131 None:intergenic 35.0%
!! GGTCTCTTTCTTTTTGAAGG+GGG + chr4_3:10755806-10755825 None:intergenic 40.0%
!! GCTGGTCTCTTTCTTTTTGA+AGG + chr4_3:10755809-10755828 None:intergenic 40.0%
!! AGACTATGATGATAGTGGAG+TGG - chr4_3:10755829-10755848 Msa0629720:intron 40.0%
AGTGGCCAATCAATCAAGTA+CGG - chr4_3:10755847-10755866 Msa0629720:intron 40.0%
TTGCACCGTACTTGATTGAT+TGG + chr4_3:10755855-10755874 None:intergenic 40.0%
! CTCCTCAATGGAGTTTTCTA+AGG - chr4_3:10756016-10756035 Msa0629720:intron 40.0%
ACCCTTAGAAAACTCCATTG+AGG + chr4_3:10756021-10756040 None:intergenic 40.0%
ATCGACCACATTTGATGTTG+TGG - chr4_3:10756129-10756148 Msa0629720:intron 40.0%
TTCAGCCACAACATCAAATG+TGG + chr4_3:10756137-10756156 None:intergenic 40.0%
!!! TTCATTCTTGTTTTCGGGGA+AGG - chr4_3:10756164-10756183 Msa0629720:intron 40.0%
ACATTGTTCACGATACCGTT+TGG - chr4_3:10756222-10756241 Msa0629720:intron 40.0%
AGGCAATGAATCCTACCAAA+CGG + chr4_3:10756240-10756259 None:intergenic 40.0%
AGTTACGAAAAGCGAACATG+AGG - chr4_3:10756321-10756340 Msa0629720:intron 40.0%
GCGAACATGAGGATTTCTTT+AGG - chr4_3:10756332-10756351 Msa0629720:intron 40.0%
ACTCATAAGAGAAGGAAGTG+GGG + chr4_3:10756379-10756398 None:intergenic 40.0%
CACTCATAAGAGAAGGAAGT+GGG + chr4_3:10756380-10756399 None:intergenic 40.0%
TCACTCATAAGAGAAGGAAG+TGG + chr4_3:10756381-10756400 None:intergenic 40.0%
TTCCTTCTCTTATGAGTGAG+TGG - chr4_3:10756382-10756401 Msa0629720:intron 40.0%
CCAATAACTCCTCGATAGAA+TGG + chr4_3:10756585-10756604 None:intergenic 40.0%
CCATTCTATCGAGGAGTTAT+TGG - chr4_3:10756582-10756601 Msa0629720:CDS 40.0%
AAAACGTACCTGGTAATTGG+AGG + chr4_3:10757021-10757040 None:intergenic 40.0%
GATATATTTGCCCATACACC+AGG - chr4_3:10757428-10757447 Msa0629720:five_prime_UTR 40.0%
CTAGCCAAAAACCTAGATAG+TGG - chr4_3:10757496-10757515 Msa0629720:five_prime_UTR 40.0%
TTGTAGCCTATCCACTATCT+AGG + chr4_3:10757510-10757529 None:intergenic 40.0%
!! TATATGGTGGTTTTTAGGCG+TGG + chr4_3:10757551-10757570 None:intergenic 40.0%
! TGAGTTTAGCTCAGTTGGTA+TGG + chr4_3:10757699-10757718 None:intergenic 40.0%
TAAACTCACGAGGAAGTCTT+AGG - chr4_3:10757711-10757730 Msa0629720:intron 40.0%
ACAACCATGTGAGTTTAGCT+CGG + chr4_3:10757751-10757770 None:intergenic 40.0%
CTAAACTCACATGGTTGTAG+TGG - chr4_3:10757753-10757772 Msa0629720:five_prime_UTR 40.0%
ATGGTTGTAGTGGTGTGATT+TGG - chr4_3:10757763-10757782 Msa0629720:five_prime_UTR 40.0%
! TTGTAGTGGTGTGATTTGGA+CGG - chr4_3:10757767-10757786 Msa0629720:five_prime_UTR 40.0%
GACTTTGTCTTGACTCTTGT+TGG + chr4_3:10758760-10758779 None:intergenic 40.0%
AAGAGTCAAGACAAAGTCGA+GGG - chr4_3:10758762-10758781 Msa0629720:five_prime_UTR 40.0%
! GTCCTTGTTTGTCTTACGAA+TGG + chr4_3:10758796-10758815 None:intergenic 40.0%
AGCAATAAACCATCTCCAAG+AGG - chr4_3:10758829-10758848 Msa0629720:intron 40.0%
AAGTCATCAATGTCTCCTCT+TGG + chr4_3:10758847-10758866 None:intergenic 40.0%
ATGACTTCTACAATCTCCTC+CGG - chr4_3:10758860-10758879 Msa0629720:intron 40.0%
AATTTGGGAAGCTCAGAATG+GGG + chr4_3:10758912-10758931 None:intergenic 40.0%
!! GTAGCTTTGTTGGAAGGATT+TGG + chr4_3:10759076-10759095 None:intergenic 40.0%
!! GTAGATGTAGCTTTGTTGGA+AGG + chr4_3:10759082-10759101 None:intergenic 40.0%
! TTAAGTGCTGCACTAGAAGA+GGG + chr4_3:10759287-10759306 None:intergenic 40.0%
! TTTAAGTGCTGCACTAGAAG+AGG + chr4_3:10759288-10759307 None:intergenic 40.0%
TAGTGGTGAAATTCTTCCTC+CGG + chr4_3:10759315-10759334 None:intergenic 40.0%
TTCACCATGAAGACGTTTGT+AGG - chr4_3:10759352-10759371 Msa0629720:intron 40.0%
TGAACCTACAAACGTCTTCA+TGG + chr4_3:10759359-10759378 None:intergenic 40.0%
TGAAGACGTTTGTAGGTTCA+AGG - chr4_3:10759359-10759378 Msa0629720:intron 40.0%
GGAAGGGAAGAACAATTGTT+TGG + chr4_3:10759448-10759467 None:intergenic 40.0%
!! GAGAAGGGATCTTTTTGGAA+GGG + chr4_3:10759464-10759483 None:intergenic 40.0%
! GAACAACAAGGTTAGCCAAA+TGG + chr4_3:10759527-10759546 None:intergenic 40.0%
TGGGCATGATATTTGGATAG+CGG + chr4_3:10759603-10759622 None:intergenic 40.0%
CGTTCTTTGGGCATGATATT+TGG + chr4_3:10759610-10759629 None:intergenic 40.0%
CAAACTCCCAAAACCAATCT+TGG - chr4_3:10759660-10759679 Msa0629720:intron 40.0%
ATTCATGTGGCTTAGGAAAG+AGG + chr4_3:10759697-10759716 None:intergenic 40.0%
TAGAAGGATTCATGTGGCTT+AGG + chr4_3:10759704-10759723 None:intergenic 40.0%
CTTTGGTAGAAGGATTCATG+TGG + chr4_3:10759710-10759729 None:intergenic 40.0%
CACATGAATCCTTCTACCAA+AGG - chr4_3:10759708-10759727 Msa0629720:intron 40.0%
TTTGTAGACCAAAGGATGAG+GGG + chr4_3:10759916-10759935 None:intergenic 40.0%
GGAGTCAATTTGTAGACCAA+AGG + chr4_3:10759924-10759943 None:intergenic 40.0%
AAGAATACTTGGGTGAGTTG+GGG + chr4_3:10759945-10759964 None:intergenic 40.0%
GAAGAATACTTGGGTGAGTT+GGG + chr4_3:10759946-10759965 None:intergenic 40.0%
AGAAGAATACTTGGGTGAGT+TGG + chr4_3:10759947-10759966 None:intergenic 40.0%
!! GCTTTGGAAAAAAAGCTTGG+TGG + chr4_3:10760136-10760155 None:intergenic 40.0%
GAAACCGGTAATACATGCTT+TGG + chr4_3:10760152-10760171 None:intergenic 40.0%
! CTCTCCCTTTTACTTACCTT+TGG + chr4_3:10760213-10760232 None:intergenic 40.0%
CACTTAAGAAAAGTGGATGC+CGG - chr4_3:10760244-10760263 Msa0629720:intron 40.0%
! CTTTTCGACCCGAAATCAAA+TGG - chr4_3:10760321-10760340 Msa0629720:intron 40.0%
GTATGAAGGCTATCCTTAGA+TGG + chr4_3:10760349-10760368 None:intergenic 40.0%
GCTTAAACAAGGAGACATCT+TGG + chr4_3:10760528-10760547 None:intergenic 40.0%
GAGTACATGATGTAGGGATT+TGG + chr4_3:10760656-10760675 None:intergenic 40.0%
GTTCTTGGAGTACATGATGT+AGG + chr4_3:10760663-10760682 None:intergenic 40.0%
! AATCGGCTTTCCATAAAGGA+AGG + chr4_3:10760801-10760820 None:intergenic 40.0%
TTCCTTTATGGAAAGCCGAT+TGG - chr4_3:10760800-10760819 Msa0629720:intron 40.0%
! AACCAATCGGCTTTCCATAA+AGG + chr4_3:10760805-10760824 None:intergenic 40.0%
! TTATGGAAAGCCGATTGGTT+AGG - chr4_3:10760805-10760824 Msa0629720:intron 40.0%
! TATAATGGAATCCATCACCG+CGG - chr4_3:10760831-10760850 Msa0629720:intron 40.0%
! TAATCGGGTTGCAAGAACTT+TGG - chr4_3:10760855-10760874 Msa0629720:intron 40.0%
CATCGAAGTTCTTCGAACTA+CGG - chr4_3:10760938-10760957 Msa0629720:intron 40.0%
AAGAAGAGAAACCTCTTGGA+AGG - chr4_3:10760970-10760989 Msa0629720:intron 40.0%
!! TTGGAAGGCACTCATTATGA+TGG - chr4_3:10760985-10761004 Msa0629720:intron 40.0%
GTGGAATAAGGAGGTTTATG+GGG - chr4_3:10761127-10761146 Msa0629720:intron 40.0%
AGGTGGAGGAGAAAATCAAA+GGG - chr4_3:10761150-10761169 Msa0629720:intron 40.0%
AGGGTTAATTGTGGAGATTG+CGG - chr4_3:10761169-10761188 Msa0629720:intron 40.0%
TCCAAAGAGCAAGAAGTAAG+TGG - chr4_3:10761303-10761322 Msa0629720:intron 40.0%
AGCAAGAAGTAAGTGGCTAA+AGG - chr4_3:10761310-10761329 Msa0629720:intron 40.0%
AGAAGTAAGTGGCTAAAGGA+AGG - chr4_3:10761314-10761333 Msa0629720:intron 40.0%
GAAGTAAGTGGCTAAAGGAA+GGG - chr4_3:10761315-10761334 Msa0629720:intron 40.0%
AAGTAAGTGGCTAAAGGAAG+GGG - chr4_3:10761316-10761335 Msa0629720:intron 40.0%
AAAGGAAGGGGATTCAAACT+CGG - chr4_3:10761328-10761347 Msa0629720:intron 40.0%
GAAGTGATTAGAAGCTCCAA+AGG - chr4_3:10761590-10761609 Msa0629720:intron 40.0%
CAATATCCTTGGCCAAGATA+TGG + chr4_3:10762258-10762277 None:intergenic 40.0%
TGCAGAAGGAAAACTAAGTG+GGG - chr4_3:10762368-10762387 Msa0629720:intron 40.0%
GTCACATATGGTATTTGACC+TGG + chr4_3:10762540-10762559 None:intergenic 40.0%
GGGAAGATCCCAATGAAAAA+GGG + chr4_3:10762562-10762581 None:intergenic 40.0%
GCCTTACAAGATGATTATGG+AGG - chr4_3:10762585-10762604 Msa0629720:intron 40.0%
GCCTCCATAATCATCTTGTA+AGG + chr4_3:10762589-10762608 None:intergenic 40.0%
GCTTTGTCAGCGAGAATATT+AGG - chr4_3:10762607-10762626 Msa0629720:intron 40.0%
! ATGTTTGTTGGTTGGTTGGT+TGG + chr4_3:10762951-10762970 None:intergenic 40.0%
CTTTGTGGATATTTGCTTCC+TGG - chr4_3:10763129-10763148 Msa0629720:intron 40.0%
CAGGGTCAAAATGGTGTAAT+AGG - chr4_3:10763292-10763311 Msa0629720:intron 40.0%
GCATTGGATTAAACTCTCAC+TGG - chr4_3:10763314-10763333 Msa0629720:intron 40.0%
! TCTAATGGGTCAGTTGAGTA+TGG + chr4_3:10763346-10763365 None:intergenic 40.0%
! GGACGGCTTTTTGATCTAAT+GGG + chr4_3:10763360-10763379 None:intergenic 40.0%
! TGGACGGCTTTTTGATCTAA+TGG + chr4_3:10763361-10763380 None:intergenic 40.0%
CCCTTGATTTCATGTTTGGA+TGG - chr4_3:10763386-10763405 Msa0629720:intron 40.0%
! CACAATTTTGTCACGATCCA+TGG + chr4_3:10763446-10763465 None:intergenic 40.0%
GATTGCTCTTGAGTGAACTT+TGG + chr4_3:10763572-10763591 None:intergenic 40.0%
! AGGAATTGGTTTCGTTGCAT+TGG + chr4_3:10763657-10763676 None:intergenic 40.0%
AATTCCTCTACATTCTGCAG+CGG - chr4_3:10763670-10763689 Msa0629720:intron 40.0%
GAAAACACTATTAACGCCGT+CGG + chr4_3:10763702-10763721 None:intergenic 40.0%
TTCATTAGGAGTGGTGAGAA+AGG + chr4_3:10763759-10763778 None:intergenic 40.0%
TATGCCATCTTCATTAGGAG+TGG + chr4_3:10763768-10763787 None:intergenic 40.0%
AAGGGATATACATTGGACCA+TGG - chr4_3:10763876-10763895 Msa0629720:intron 40.0%
AGGGATATACATTGGACCAT+GGG - chr4_3:10763877-10763896 Msa0629720:intron 40.0%
TGTTTGTCCAAAAGGGATTC+AGG - chr4_3:10763986-10764005 Msa0629720:intron 40.0%
!!! TGGTTTTTTGTGTGAAGGCA+AGG - chr4_3:10764499-10764518 Msa0629720:intron 40.0%
AGGCAAGGTGTGAATGTAAA+AGG - chr4_3:10764514-10764533 Msa0629720:intron 40.0%
! ATACTTTGCATGGTCCCTTT+TGG - chr4_3:10764537-10764556 Msa0629720:intron 40.0%
! CCCTTTTGGACAACTTTGAA+TGG - chr4_3:10764551-10764570 Msa0629720:intron 40.0%
CTTCTTCTTCGCCAATAAAG+AGG - chr4_3:10764862-10764881 Msa0629720:intron 40.0%
TCTTCTTCGCCAATAAAGAG+GGG - chr4_3:10764864-10764883 Msa0629720:intron 40.0%
TTGTGTTTGTCGTCTTTGTG+TGG - chr4_3:10765021-10765040 Msa0629720:intron 40.0%
!! CTCTTTCTTTTTGAAGGGGG+TGG + chr4_3:10755803-10755822 None:intergenic 45.0%
CCACTATCATCATAGTCTGC+TGG + chr4_3:10755827-10755846 None:intergenic 45.0%
CCAGCAGACTATGATGATAG+TGG - chr4_3:10755824-10755843 Msa0629720:intron 45.0%
CAATCAAGTACGGTGCAATC+AGG - chr4_3:10755857-10755876 Msa0629720:intron 45.0%
!! CTTGTTTTCGGGGAAGGTAA+TGG - chr4_3:10756170-10756189 Msa0629720:intron 45.0%
TGTTCACGATACCGTTTGGT+AGG - chr4_3:10756226-10756245 Msa0629720:intron 45.0%
CTCATAAGAGAAGGAAGTGG+GGG + chr4_3:10756378-10756397 None:intergenic 45.0%
TGCCACTCACTCATAAGAGA+AGG + chr4_3:10756387-10756406 None:intergenic 45.0%
AGACGAAGGGAGTTTCTTGT+GGG - chr4_3:10756406-10756425 Msa0629720:three_prime_UTR 45.0%
GAAGAACATCAGGGTGAAAC+TGG + chr4_3:10756454-10756473 None:intergenic 45.0%
CTAAGGACATCATCACTGCA+GGG + chr4_3:10756480-10756499 None:intergenic 45.0%
GATAGAATGGGGTTGTCGAA+AGG + chr4_3:10756572-10756591 None:intergenic 45.0%
! GCTAAATCGGAGCAGTTTTC+CGG - chr4_3:10756971-10756990 Msa0629720:intron 45.0%
!! GAAGGTGCTGTACATGAAGA+CGG - chr4_3:10757386-10757405 Msa0629720:intron 45.0%
! AGGCGTGGTCATGATTTGTA+AGG + chr4_3:10757536-10757555 None:intergenic 45.0%
!!! GGAATTTTTTTGGTGGTGGC+CGG - chr4_3:10757636-10757655 Msa0629720:five_prime_UTR 45.0%
AACTCTAATGCCACTCCATG+TGG - chr4_3:10758210-10758229 Msa0629720:intron 45.0%
GTTGTAACTGCATACAGGGA+AGG - chr4_3:10758274-10758293 Msa0629720:intron 45.0%
ACTGCATACAGGGAAGGTAA+AGG - chr4_3:10758280-10758299 Msa0629720:intron 45.0%
CATACAGGGAAGGTAAAGGA+TGG - chr4_3:10758284-10758303 Msa0629720:intron 45.0%
GGGATACTCACCCTTAAGAA+AGG - chr4_3:10758725-10758744 Msa0629720:five_prime_UTR 45.0%
CAAGAGTCAAGACAAAGTCG+AGG - chr4_3:10758761-10758780 Msa0629720:five_prime_UTR 45.0%
TCAATGTCTCCTCTTGGAGA+TGG + chr4_3:10758841-10758860 None:intergenic 45.0%
!! TTCTAAAATTTGGGAGCCGG+AGG + chr4_3:10758879-10758898 None:intergenic 45.0%
! GGAACGGGGATGATTTTACT+CGG + chr4_3:10759032-10759051 None:intergenic 45.0%
ATCTCGTATAGGAGCTTTGC+CGG + chr4_3:10759172-10759191 None:intergenic 45.0%
!! AAGGGGAATCTGGACTAGTT+TGG + chr4_3:10759262-10759281 None:intergenic 45.0%
AGTGCAGCACTTAAATTCGC+CGG - chr4_3:10759293-10759312 Msa0629720:intron 45.0%
! GGAGAAGGGATCTTTTTGGA+AGG + chr4_3:10759465-10759484 None:intergenic 45.0%
! GAGTGGAGAAGGGATCTTTT+TGG + chr4_3:10759469-10759488 None:intergenic 45.0%
TTGGGACTTTGAGTGGAGAA+GGG + chr4_3:10759479-10759498 None:intergenic 45.0%
!! GTCTATGGGTTGATGAAGAG+TGG + chr4_3:10759504-10759523 None:intergenic 45.0%
CATCAACCCATAGACCCATT+TGG - chr4_3:10759509-10759528 Msa0629720:intron 45.0%
! GGTTAGCCAAATGGGTCTAT+GGG + chr4_3:10759518-10759537 None:intergenic 45.0%
! AGGTTAGCCAAATGGGTCTA+TGG + chr4_3:10759519-10759538 None:intergenic 45.0%
GGCATGATATTTGGATAGCG+GGG + chr4_3:10759601-10759620 None:intergenic 45.0%
GGGCATGATATTTGGATAGC+GGG + chr4_3:10759602-10759621 None:intergenic 45.0%
ATGGGGAAGCAACGTTCTTT+GGG + chr4_3:10759622-10759641 None:intergenic 45.0%
AATGGGGAAGCAACGTTCTT+TGG + chr4_3:10759623-10759642 None:intergenic 45.0%
GGTTGGAAAACGTCCAAGAT+TGG + chr4_3:10759676-10759695 None:intergenic 45.0%
ATGTGGCTTAGGAAAGAGGT+TGG + chr4_3:10759693-10759712 None:intergenic 45.0%
GAATCCTTCTACCAAAGGGA+TGG - chr4_3:10759713-10759732 Msa0629720:intron 45.0%
ACATCCATCCCTTTGGTAGA+AGG + chr4_3:10759720-10759739 None:intergenic 45.0%
CACCATTTCCACTTTGCAAG+AGG - chr4_3:10759851-10759870 Msa0629720:intron 45.0%
CTCCTCTTGCAAAGTGGAAA+TGG + chr4_3:10759856-10759875 None:intergenic 45.0%
ATATGGCTCCTCTTGCAAAG+TGG + chr4_3:10759862-10759881 None:intergenic 45.0%
TTGTAGACCAAAGGATGAGG+GGG + chr4_3:10759915-10759934 None:intergenic 45.0%
!! ATCGGTTTGTGAGTCTTGGT+GGG + chr4_3:10760105-10760124 None:intergenic 45.0%
!! AATCGGTTTGTGAGTCTTGG+TGG + chr4_3:10760106-10760125 None:intergenic 45.0%
!! AGGAATCGGTTTGTGAGTCT+TGG + chr4_3:10760109-10760128 None:intergenic 45.0%
! AAAAAAAGCTTGGTGGGTGG+AGG + chr4_3:10760129-10760148 None:intergenic 45.0%
! TGGAAAAAAAGCTTGGTGGG+TGG + chr4_3:10760132-10760151 None:intergenic 45.0%
TTTCTCCAACCGTCAACCAA+AGG - chr4_3:10760194-10760213 Msa0629720:intron 45.0%
ACTTACCTTTGGTTGACGGT+TGG + chr4_3:10760202-10760221 None:intergenic 45.0%
AACAAGGAGACATCTTGGTG+TGG + chr4_3:10760523-10760542 None:intergenic 45.0%
CATAATGAGTGCCTTCCAAG+AGG + chr4_3:10760984-10761003 None:intergenic 45.0%
GAATAAGGAGGTTTATGGGG+AGG - chr4_3:10761130-10761149 Msa0629720:intron 45.0%
GAGGTGGAGGAGAAAATCAA+AGG - chr4_3:10761149-10761168 Msa0629720:intron 45.0%
AATTGTGGAGATTGCGGATG+TGG - chr4_3:10761175-10761194 Msa0629720:intron 45.0%
CCTCTACCTCATTATCCGAA+AGG + chr4_3:10761223-10761242 None:intergenic 45.0%
CCTTTCGGATAATGAGGTAG+AGG - chr4_3:10761220-10761239 Msa0629720:intron 45.0%
CGGATAATGAGGTAGAGGTT+TGG - chr4_3:10761225-10761244 Msa0629720:intron 45.0%
CTTCAAAAGGCCCCAAAGAT+TGG + chr4_3:10761264-10761283 None:intergenic 45.0%
GCCACTTACTTCTTGCTCTT+TGG + chr4_3:10761307-10761326 None:intergenic 45.0%
GTCTTAAAGCAGACGGATGA+TGG + chr4_3:10761430-10761449 None:intergenic 45.0%
!! TCCGTCTGCTTTAAGACATG+CGG - chr4_3:10761433-10761452 Msa0629720:intron 45.0%
ACCGCATGTCTTAAAGCAGA+CGG + chr4_3:10761437-10761456 None:intergenic 45.0%
TCACTGGGACATGCCTAATT+TGG - chr4_3:10761490-10761509 Msa0629720:intron 45.0%
AGGGGAGCAAAATGAGTCTT+TGG - chr4_3:10761538-10761557 Msa0629720:intron 45.0%
CTCCAAAGGCAACAAAAGTC+CGG - chr4_3:10761604-10761623 Msa0629720:intron 45.0%
TCCAAAGGCAACAAAAGTCC+GGG - chr4_3:10761605-10761624 Msa0629720:intron 45.0%
AAGCTAAATCCAACCTGTCC+CGG + chr4_3:10761626-10761645 None:intergenic 45.0%
GATTCTCCATATCTTGGCCA+AGG - chr4_3:10762249-10762268 Msa0629720:intron 45.0%
GCAGAAGGAAAACTAAGTGG+GGG - chr4_3:10762369-10762388 Msa0629720:intron 45.0%
GGGGAAGATCCCAATGAAAA+AGG + chr4_3:10762563-10762582 None:intergenic 45.0%
! GAAGTTGGTTGTGTGTTGAC+TGG + chr4_3:10763231-10763250 None:intergenic 45.0%
CATCTGCATGAGCAAGAAGT+TGG + chr4_3:10763246-10763265 None:intergenic 45.0%
!! ACATGAAATCAAGGGCGTCT+TGG + chr4_3:10763381-10763400 None:intergenic 45.0%
GACGCCCTTGATTTCATGTT+TGG - chr4_3:10763382-10763401 Msa0629720:intron 45.0%
GACCGTTTCTACAACAACCA+TGG - chr4_3:10763426-10763445 Msa0629720:intron 45.0%
ACATAAGACACCATGCTTGC+TGG + chr4_3:10763536-10763555 None:intergenic 45.0%
AGCAAGCATGGTGTCTTATG+TGG - chr4_3:10763535-10763554 Msa0629720:intron 45.0%
GCAAGCATGGTGTCTTATGT+GGG - chr4_3:10763536-10763555 Msa0629720:intron 45.0%
GCTGCAGAATGTAGAGGAAT+TGG + chr4_3:10763671-10763690 None:intergenic 45.0%
ATTCCTCTACATTCTGCAGC+GGG - chr4_3:10763671-10763690 Msa0629720:intron 45.0%
CTCACCACTCCTAATGAAGA+TGG - chr4_3:10763761-10763780 Msa0629720:five_prime_UTR 45.0%
AAGAGAGTCTTACTCACCCA+TGG + chr4_3:10763896-10763915 None:intergenic 45.0%
ATGGGTGAGTAAGACTCTCT+TGG - chr4_3:10763895-10763914 Msa0629720:intron 45.0%
AATATGTGCAGGCTGCAACT+TGG - chr4_3:10763958-10763977 Msa0629720:intron 45.0%
! AGTAGGTCCTGAATCCCTTT+TGG + chr4_3:10763996-10764015 None:intergenic 45.0%
GGACCTACTGTTGTACACAA+AGG - chr4_3:10764007-10764026 Msa0629720:intron 45.0%
CTTCTTCGCCAATAAAGAGG+GGG - chr4_3:10764865-10764884 Msa0629720:intron 45.0%
! CGAGATACAAGGGGTGATTT+TGG + chr4_3:10764913-10764932 None:intergenic 45.0%
! TTGCCTTTCTTGTTTCGCTC+AGG - chr4_3:10765050-10765069 Msa0629720:intron 45.0%
AGACCTGAGCGAAACAAGAA+AGG + chr4_3:10765056-10765075 None:intergenic 45.0%
ATCTGGAGACATGGGTATTC+CGG - chr4_3:10765154-10765173 Msa0629720:intron 45.0%
!!! TTTTTTTCTTAAAATAAAAA+AGG + chr4_3:10756766-10756785 None:intergenic 5.0%
ATAAGAGAAGGAAGTGGGGG+TGG + chr4_3:10756375-10756394 None:intergenic 50.0%
TATGAGTGAGTGGCAGACGA+AGG - chr4_3:10756392-10756411 Msa0629720:three_prime_UTR 50.0%
ATGAGTGAGTGGCAGACGAA+GGG - chr4_3:10756393-10756412 Msa0629720:three_prime_UTR 50.0%
CAGACGAAGGGAGTTTCTTG+TGG - chr4_3:10756405-10756424 Msa0629720:three_prime_UTR 50.0%
TGAAACTGGACATCCCGACT+AGG + chr4_3:10756440-10756459 None:intergenic 50.0%
GCAGGGTGAGAAGAACATCA+GGG + chr4_3:10756463-10756482 None:intergenic 50.0%
TGCAGGGTGAGAAGAACATC+AGG + chr4_3:10756464-10756483 None:intergenic 50.0%
GCTAAGGACATCATCACTGC+AGG + chr4_3:10756481-10756500 None:intergenic 50.0%
TCGACAACCCCATTCTATCG+AGG - chr4_3:10756573-10756592 Msa0629720:CDS 50.0%
! AATCGGAGCAGTTTTCCGGA+AGG - chr4_3:10756975-10756994 Msa0629720:intron 50.0%
!! TACTGGCTCCTCCAATTACC+AGG - chr4_3:10757010-10757029 Msa0629720:intron 50.0%
GCTGTACATGAAGACGGAAG+AGG - chr4_3:10757392-10757411 Msa0629720:intron 50.0%
CATGAAGACGGAAGAGGACT+TGG - chr4_3:10757398-10757417 Msa0629720:intron 50.0%
! ACGGAAGAGGACTTGGTACA+TGG - chr4_3:10757405-10757424 Msa0629720:intron 50.0%
! CGGAAGAGGACTTGGTACAT+GGG - chr4_3:10757406-10757425 Msa0629720:intron 50.0%
! CCTCGTGAGTTTAGCTCAGT+TGG + chr4_3:10757704-10757723 None:intergenic 50.0%
CCAACTGAGCTAAACTCACG+AGG - chr4_3:10757701-10757720 Msa0629720:intron 50.0%
CTAGCCGAGCTAAACTCACA+TGG - chr4_3:10757744-10757763 Msa0629720:intron 50.0%
ATGCCACTCCATGTGGCTAA+TGG - chr4_3:10758217-10758236 Msa0629720:intron 50.0%
TGCCACTCCATGTGGCTAAT+GGG - chr4_3:10758218-10758237 Msa0629720:intron 50.0%
GATTCCACCCATTAGCCACA+TGG + chr4_3:10758228-10758247 None:intergenic 50.0%
TTCGGATTGTGTGTGGTGCT+CGG + chr4_3:10759139-10759158 None:intergenic 50.0%
GTGTGACTTCGGATTGTGTG+TGG + chr4_3:10759146-10759165 None:intergenic 50.0%
CAATCCGAAGTCACACCAAC+CGG - chr4_3:10759150-10759169 Msa0629720:intron 50.0%
! TTTGCCGGTTGGTGTGACTT+CGG + chr4_3:10759157-10759176 None:intergenic 50.0%
TGCACTAGAAGAGGGCTAAG+GGG + chr4_3:10759279-10759298 None:intergenic 50.0%
CTGCACTAGAAGAGGGCTAA+GGG + chr4_3:10759280-10759299 None:intergenic 50.0%
GTTGGGACTTTGAGTGGAGA+AGG + chr4_3:10759480-10759499 None:intergenic 50.0%
!! GGTTGATGAAGAGTGGCGTT+GGG + chr4_3:10759497-10759516 None:intergenic 50.0%
TGTAGACCAAAGGATGAGGG+GGG + chr4_3:10759914-10759933 None:intergenic 50.0%
GTTTGTGAGTCTTGGTGGGA+GGG + chr4_3:10760101-10760120 None:intergenic 50.0%
!! AGGGGCATTGATGAAGGAAG+TGG + chr4_3:10760489-10760508 None:intergenic 50.0%
! AAGGAGACATCTTGGTGTGG+CGG + chr4_3:10760520-10760539 None:intergenic 50.0%
TGGTTGCTCAACGGATCAAG+TGG + chr4_3:10760564-10760583 None:intergenic 50.0%
!! GTTGGTGGTTAATGAGGTGG+TGG + chr4_3:10760761-10760780 None:intergenic 50.0%
!! CGTGTTGGTGGTTAATGAGG+TGG + chr4_3:10760764-10760783 None:intergenic 50.0%
AAAGGAAGGCTCCTTGTGGA+CGG + chr4_3:10760787-10760806 None:intergenic 50.0%
CCATAAAGGAAGGCTCCTTG+TGG + chr4_3:10760791-10760810 None:intergenic 50.0%
CCACAAGGAGCCTTCCTTTA+TGG - chr4_3:10760788-10760807 Msa0629720:intron 50.0%
AATCCATCACCGCGGCTAAT+CGG - chr4_3:10760839-10760858 Msa0629720:intron 50.0%
CTTCGATGCTCACTCTCTTC+TGG + chr4_3:10760926-10760945 None:intergenic 50.0%
TAAGGAGGTTTATGGGGAGG+TGG - chr4_3:10761133-10761152 Msa0629720:intron 50.0%
! TCCCGGACTTTTGTTGCCTT+TGG + chr4_3:10761609-10761628 None:intergenic 50.0%
AACAAAAGTCCGGGACAGGT+TGG - chr4_3:10761614-10761633 Msa0629720:intron 50.0%
!! AGTGGGGGTATTAACCCAGA+CGG - chr4_3:10762384-10762403 Msa0629720:intron 50.0%
!! GAAATCAAGGGCGTCTTGGA+CGG + chr4_3:10763377-10763396 None:intergenic 50.0%
GGATACTCTCCTGTTGTCAG+TGG + chr4_3:10763515-10763534 None:intergenic 50.0%
!! AGGAGAGTATCCAGCAAGCA+TGG - chr4_3:10763523-10763542 Msa0629720:intron 50.0%
! TGCATTGGCAGCATACATGC+TGG + chr4_3:10763642-10763661 None:intergenic 50.0%
TCCAACACTATCACCCGAAG+AGG - chr4_3:10764310-10764329 Msa0629720:intron 50.0%
AGTATCCATGAGCGCCTCTT+CGG + chr4_3:10764327-10764346 None:intergenic 50.0%
! GACGGATACACTGTGCGTTT+TGG - chr4_3:10764577-10764596 Msa0629720:intron 50.0%
ATGTCTCCAGATCTGCAACG+TGG + chr4_3:10765146-10765165 None:intergenic 50.0%
ACGTTGCAGATCTGGAGACA+TGG - chr4_3:10765145-10765164 Msa0629720:intron 50.0%
CGTTGCAGATCTGGAGACAT+GGG - chr4_3:10765146-10765165 Msa0629720:intron 50.0%
! CGGGGAAGGTAATGGTTGTG+TGG - chr4_3:10756178-10756197 Msa0629720:intron 55.0%
ACTGGACATCCCGACTAGGT+CGG + chr4_3:10756436-10756455 None:intergenic 55.0%
AAGGTCCGGGGTTCTTACTC+CGG + chr4_3:10757658-10757677 None:intergenic 55.0%
! GTGTGATTTGGACGGTGTCG+TGG - chr4_3:10757775-10757794 Msa0629720:five_prime_UTR 55.0%
!! TGATTTGGACGGTGTCGTGG+TGG - chr4_3:10757778-10757797 Msa0629720:five_prime_UTR 55.0%
CACCCATTAGCCACATGGAG+TGG + chr4_3:10758223-10758242 None:intergenic 55.0%
CACTCCATGTGGCTAATGGG+TGG - chr4_3:10758221-10758240 Msa0629720:intron 55.0%
!! CTCGGGTTTTCAAGAGGTGG+AGG + chr4_3:10759121-10759140 None:intergenic 55.0%
!! GTGCTCGGGTTTTCAAGAGG+TGG + chr4_3:10759124-10759143 None:intergenic 55.0%
!! GTGGTGCTCGGGTTTTCAAG+AGG + chr4_3:10759127-10759146 None:intergenic 55.0%
TCGGATTGTGTGTGGTGCTC+GGG + chr4_3:10759138-10759157 None:intergenic 55.0%
CGTATAGGAGCTTTGCCGGT+TGG + chr4_3:10759168-10759187 None:intergenic 55.0%
GAAGAGGGCTAAGGGGAATC+TGG + chr4_3:10759272-10759291 None:intergenic 55.0%
GCTGCACTAGAAGAGGGCTA+AGG + chr4_3:10759281-10759300 None:intergenic 55.0%
GCAGCACTTAAATTCGCCGG+AGG - chr4_3:10759296-10759315 Msa0629720:intron 55.0%
! AGTGGCGTTGGGACTTTGAG+TGG + chr4_3:10759486-10759505 None:intergenic 55.0%
!! GGGTTGATGAAGAGTGGCGT+TGG + chr4_3:10759498-10759517 None:intergenic 55.0%
CCAAAGGATGAGGGGGGATT+AGG + chr4_3:10759908-10759927 None:intergenic 55.0%
CCTAATCCCCCCTCATCCTT+TGG - chr4_3:10759905-10759924 Msa0629720:intron 55.0%
GGTTTGTGAGTCTTGGTGGG+AGG + chr4_3:10760102-10760121 None:intergenic 55.0%
! AGCTTGGTGGGTGGAGGAAT+CGG + chr4_3:10760123-10760142 None:intergenic 55.0%
!! GGGGTTAGGGGCATTGATGA+AGG + chr4_3:10760495-10760514 None:intergenic 55.0%
! AGACATCTTGGTGTGGCGGA+GGG + chr4_3:10760516-10760535 None:intergenic 55.0%
!! CGGCGTGTTGGTGGTTAATG+AGG + chr4_3:10760767-10760786 None:intergenic 55.0%
ATCCATCACCGCGGCTAATC+GGG - chr4_3:10760840-10760859 Msa0629720:intron 55.0%
! TCTTGCAACCCGATTAGCCG+CGG + chr4_3:10760851-10760870 None:intergenic 55.0%
AGGCAACAAAAGTCCGGGAC+AGG - chr4_3:10761610-10761629 Msa0629720:intron 55.0%
! GCCTCTTCGGGTGATAGTGT+TGG + chr4_3:10764314-10764333 None:intergenic 55.0%
GTATCCATGAGCGCCTCTTC+GGG + chr4_3:10764326-10764345 None:intergenic 55.0%
ACCATCGGGCAGAGAGCTTA+GGG + chr4_3:10764642-10764661 None:intergenic 55.0%
AACCATCGGGCAGAGAGCTT+AGG + chr4_3:10764643-10764662 None:intergenic 55.0%
AGCTCTCTGCCCGATGGTTT+AGG - chr4_3:10764644-10764663 Msa0629720:intron 55.0%
TCTCCAGATCTGCAACGTGG+AGG + chr4_3:10765143-10765162 None:intergenic 55.0%
! TGTGGGTGTGCCGACCTAGT+CGG - chr4_3:10756423-10756442 Msa0629720:three_prime_UTR 60.0%
!! CGGTGTCGTGGTGGAAACTC+TGG - chr4_3:10757787-10757806 Msa0629720:five_prime_UTR 60.0%
! ACATCTTGGTGTGGCGGAGG+GGG + chr4_3:10760514-10760533 None:intergenic 60.0%
! GACATCTTGGTGTGGCGGAG+GGG + chr4_3:10760515-10760534 None:intergenic 60.0%
! GAGACATCTTGGTGTGGCGG+AGG + chr4_3:10760517-10760536 None:intergenic 60.0%
! AACCCGATTAGCCGCGGTGA+TGG + chr4_3:10760845-10760864 None:intergenic 60.0%
GGAGGTTTATGGGGAGGTGG+AGG - chr4_3:10761136-10761155 Msa0629720:intron 60.0%
CCTCTACATTCTGCAGCGGG+CGG - chr4_3:10763674-10763693 Msa0629720:intron 60.0%
!! ATCACCCGAAGAGGCGCTCA+TGG - chr4_3:10764319-10764338 Msa0629720:intron 60.0%
ACCCTAAGCTCTCTGCCCGA+TGG - chr4_3:10764638-10764657 Msa0629720:intron 60.0%
CGTCCTCCACGTTGCAGATC+TGG - chr4_3:10765137-10765156 Msa0629720:intron 60.0%
! GTGGGTGTGCCGACCTAGTC+GGG - chr4_3:10756424-10756443 Msa0629720:three_prime_UTR 65.0%
GGTGGCCGGAGTAAGAACCC+CGG - chr4_3:10757650-10757669 Msa0629720:intron 65.0%
! TGGTGTGGCGGAGGGGGTTA+GGG + chr4_3:10760508-10760527 None:intergenic 65.0%
! TTGGTGTGGCGGAGGGGGTT+AGG + chr4_3:10760509-10760528 None:intergenic 65.0%
CCTTGTGGACGGCGTGTTGG+TGG + chr4_3:10760776-10760795 None:intergenic 65.0%
CCACCAACACGCCGTCCACA+AGG - chr4_3:10760773-10760792 Msa0629720:intron 65.0%
GCTCCTTGTGGACGGCGTGT+TGG + chr4_3:10760779-10760798 None:intergenic 65.0%
CCGCCCGCTGCAGAATGTAG+AGG + chr4_3:10763677-10763696 None:intergenic 65.0%
! GGTGTGGCGGAGGGGGTTAG+GGG + chr4_3:10760507-10760526 None:intergenic 70.0%
!! TCTGCAGCGGGCGGCGCCGA+CGG - chr4_3:10763683-10763702 Msa0629720:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10755692 10765468 10755692 ID=Msa0629720;Name=Msa0629720
chr4_3 mRNA 10755692 10765468 10755692 ID=Msa0629720-mRNA-1;Parent=Msa0629720;Name=Msa0629720-mRNA-1;_AED=0.17;_eAED=0.17;_QI=1422|1|1|1|0.66|0.53|13|151|96
chr4_3 exon 10755692 10755767 10755692 ID=Msa0629720-mRNA-1:exon:3308;Parent=Msa0629720-mRNA-1
chr4_3 exon 10756386 10756644 10756386 ID=Msa0629720-mRNA-1:exon:3307;Parent=Msa0629720-mRNA-1
chr4_3 exon 10756761 10756869 10756761 ID=Msa0629720-mRNA-1:exon:3306;Parent=Msa0629720-mRNA-1
chr4_3 exon 10757092 10757220 10757092 ID=Msa0629720-mRNA-1:exon:3305;Parent=Msa0629720-mRNA-1
chr4_3 exon 10757414 10757658 10757414 ID=Msa0629720-mRNA-1:exon:3304;Parent=Msa0629720-mRNA-1
chr4_3 exon 10757753 10758046 10757753 ID=Msa0629720-mRNA-1:exon:3303;Parent=Msa0629720-mRNA-1
chr4_3 exon 10758532 10758619 10758532 ID=Msa0629720-mRNA-1:exon:3302;Parent=Msa0629720-mRNA-1
chr4_3 exon 10758710 10758787 10758710 ID=Msa0629720-mRNA-1:exon:3301;Parent=Msa0629720-mRNA-1
chr4_3 exon 10758879 10758954 10758879 ID=Msa0629720-mRNA-1:exon:3300;Parent=Msa0629720-mRNA-1
chr4_3 exon 10762811 10762869 10762811 ID=Msa0629720-mRNA-1:exon:3299;Parent=Msa0629720-mRNA-1
chr4_3 exon 10763711 10763854 10763711 ID=Msa0629720-mRNA-1:exon:3298;Parent=Msa0629720-mRNA-1
chr4_3 exon 10764098 10764232 10764098 ID=Msa0629720-mRNA-1:exon:3297;Parent=Msa0629720-mRNA-1
chr4_3 exon 10765297 10765468 10765297 ID=Msa0629720-mRNA-1:exon:3296;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10765297 10765468 10765297 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10764098 10764232 10764098 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10763711 10763854 10763711 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10762811 10762869 10762811 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10758879 10758954 10758879 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10758710 10758787 10758710 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10758532 10758619 10758532 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10757753 10758046 10757753 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10757414 10757658 10757414 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10757092 10757220 10757092 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 five_prime_UTR 10756868 10756869 10756868 ID=Msa0629720-mRNA-1:five_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 CDS 10756761 10756867 10756761 ID=Msa0629720-mRNA-1:cds;Parent=Msa0629720-mRNA-1
chr4_3 CDS 10756461 10756644 10756461 ID=Msa0629720-mRNA-1:cds;Parent=Msa0629720-mRNA-1
chr4_3 three_prime_UTR 10756386 10756460 10756386 ID=Msa0629720-mRNA-1:three_prime_utr;Parent=Msa0629720-mRNA-1
chr4_3 three_prime_UTR 10755692 10755767 10755692 ID=Msa0629720-mRNA-1:three_prime_utr;Parent=Msa0629720-mRNA-1
Gene Sequence

>Msa0629720

ATGAATGAAGTCAATGATCCAACACTATCACCCGAAGAGGCGCTCATGGATACTTATAGAATTGATTACTTTTATCGTCATCTATATTATCTTTTATCTGCAATGAGGCAAGGTGTGAATGTAAAAGGATACTTTGCATGGTCCCTTTTGGACAACTTTGAATGGAATGACGGATACACTGTGCGTTTTGGAATTAACTTTGTTGATTATGACAATGATCTTAGAAGACACCCTAAGCTCTCTGCCCGATGGTTTAGGAAGTTTCTTGAACATAATAGAATTATTGGTTGA
Protein sequence

>Msa0629720

MNEVNDPTLSPEEALMDTYRIDYFYRHLYYLLSAMRQGVNVKGYFAWSLLDNFEWNDGYTVRFGINFVDYDNDLRRHPKLSARWFRKFLEHNRIIG*