AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0448230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448230 MtrunA17_Chr3g0090331 91.348 497 43 0 1 497 1 497 0.0 969
Msa0448230 MtrunA17_Chr4g0020241 70.816 490 140 3 1 490 1 487 0.0 719
Msa0448230 MtrunA17_Chr3g0118851 57.075 424 173 5 66 486 69 486 3.83e-170 489
Msa0448230 MtrunA17_Chr3g0118841 55.245 429 184 5 66 492 70 492 1.45e-165 477
Msa0448230 MtrunA17_Chr3g0118881 53.653 438 186 6 66 492 69 500 2.81e-165 477
Msa0448230 MtrunA17_Chr1g0153881 50.710 493 222 10 6 490 18 497 1.86e-164 474
Msa0448230 MtrunA17_Chr7g0219051 51.136 440 196 6 67 490 28 464 1.68e-158 458
Msa0448230 MtrunA17_Chr1g0199991 50.000 430 205 5 70 490 28 456 2.11e-156 452
Msa0448230 MtrunA17_Chr4g0038311 50.115 435 202 5 70 490 30 463 2.97e-155 450
Msa0448230 MtrunA17_Chr3g0118831 53.440 436 157 8 61 490 64 459 1.37e-152 443
Msa0448230 MtrunA17_Chr3g0118861 51.370 438 164 7 63 487 64 465 8.52e-150 436
Msa0448230 MtrunA17_Chr1g0199971 48.372 430 212 5 70 490 28 456 1.06e-149 435
Msa0448230 MtrunA17_Chr1g0153941 45.243 515 240 10 8 490 8 512 2.88e-146 429
Msa0448230 MtrunA17_Chr3g0118891 53.412 425 154 9 66 486 69 453 1.02e-145 426
Msa0448230 MtrunA17_Chr2g0309521 46.313 434 223 7 69 493 33 465 2.44e-143 420
Msa0448230 MtrunA17_Chr2g0309511 46.189 433 223 7 70 493 34 465 1.03e-142 418
Msa0448230 MtrunA17_Chr4g0047861 47.955 440 207 8 73 493 52 488 2.78e-140 412
Msa0448230 MtrunA17_Chr2g0309541 45.011 451 231 9 56 495 24 468 8.96e-140 410
Msa0448230 MtrunA17_Chr2g0318911 45.824 443 227 8 56 489 24 462 6.98e-139 408
Msa0448230 MtrunA17_Chr2g0281621 43.982 457 238 5 53 493 14 468 5.77e-132 390
Msa0448230 MtrunA17_Chr4g0068841 45.190 447 218 8 71 492 35 479 2.95e-131 389
Msa0448230 MtrunA17_Chr5g0431301 43.498 446 232 7 67 494 22 465 3.49e-122 365
Msa0448230 MtrunA17_Chr3g0126031 43.665 442 233 7 67 494 21 460 2.89e-121 363
Msa0448230 MtrunA17_Chr3g0126051 41.855 442 243 6 67 494 26 467 1.80e-116 351
Msa0448230 MtrunA17_Chr7g0221551 43.218 435 224 9 73 490 29 457 4.86e-115 347
Msa0448230 MtrunA17_Chr3g0131731 42.922 438 225 11 73 490 29 461 4.72e-114 344
Msa0448230 MtrunA17_Chr3g0094811 41.649 461 237 10 52 490 4 454 7.03e-113 341
Msa0448230 MtrunA17_Chr2g0281641 45.170 383 190 5 126 490 7 387 3.43e-111 335
Msa0448230 MtrunA17_Chr2g0304931 42.141 439 232 10 69 492 33 464 1.31e-108 330
Msa0448230 MtrunA17_Chr8g0385871 41.324 438 230 10 73 490 32 462 1.06e-107 328
Msa0448230 MtrunA17_Chr4g0068861 42.462 398 204 8 71 445 81 476 2.30e-106 325
Msa0448230 MtrunA17_Chr1g0153931 53.101 258 109 5 6 254 3 257 1.71e-83 259
Msa0448230 MtrunA17_Chr8g0338461 32.627 472 262 7 71 489 27 495 4.29e-83 266
Msa0448230 MtrunA17_Chr7g0234051 33.192 473 259 8 71 489 26 495 1.40e-77 251
Msa0448230 MtrunA17_Chr1g0204191 34.581 454 238 11 57 490 76 490 1.05e-75 246
Msa0448230 MtrunA17_Chr7g0249431 35.307 473 240 16 75 486 28 495 2.19e-74 243
Msa0448230 MtrunA17_Chr1g0165811 45.679 243 122 4 71 311 27 261 7.20e-66 213
Msa0448230 MtrunA17_Chr1g0153921 44.843 223 116 3 268 490 1 216 2.42e-61 200
Msa0448230 MtrunA17_Chr2g0285371 29.252 441 281 12 75 489 34 469 1.50e-54 190
Msa0448230 MtrunA17_Chr7g0234041 32.477 428 225 12 75 448 27 444 2.56e-52 184
Msa0448230 MtrunA17_Chr4g0009701 27.828 442 283 14 74 489 39 470 8.07e-51 180
Msa0448230 MtrunA17_Chr2g0285351 27.438 441 290 11 75 489 33 469 3.47e-49 175
Msa0448230 MtrunA17_Chr4g0009681 28.018 439 286 11 74 489 36 467 6.36e-49 174
Msa0448230 MtrunA17_Chr4g0028271 30.806 422 248 14 86 486 95 493 7.66e-49 175
Msa0448230 MtrunA17_Chr2g0285381 28.670 436 283 13 75 489 37 465 2.03e-47 171
Msa0448230 MtrunA17_Chr2g0327401 29.691 421 257 15 85 486 97 497 3.57e-47 171
Msa0448230 MtrunA17_Chr4g0009711 26.984 441 292 12 72 489 37 470 7.38e-47 169
Msa0448230 MtrunA17_Chr4g0009661 26.984 441 288 12 74 489 39 470 8.51e-47 169
Msa0448230 MtrunA17_Chr4g0009651 26.697 442 288 12 74 489 39 470 4.30e-46 167
Msa0448230 MtrunA17_Chr4g0009641 27.335 439 265 13 74 489 39 446 5.22e-46 166
Msa0448230 MtrunA17_Chr3g0133011 28.228 457 272 13 75 489 54 496 1.15e-45 166
Msa0448230 MtrunA17_Chr4g0028281 29.018 448 288 12 53 486 60 491 5.24e-45 164
Msa0448230 MtrunA17_Chr1g0171411 31.116 421 251 17 86 487 81 481 7.80e-45 164
Msa0448230 MtrunA17_Chr4g0028261 30.465 430 253 19 80 486 109 515 8.28e-43 159
Msa0448230 MtrunA17_Chr4g0009671 26.328 433 286 13 81 489 12 435 1.56e-42 156
Msa0448230 MtrunA17_Chr5g0447441 30.446 404 248 14 91 480 44 428 5.48e-42 155
Msa0448230 MtrunA17_Chr1g0199171 29.202 476 277 20 47 487 37 487 1.71e-41 155
Msa0448230 MtrunA17_Chr2g0327381 27.706 462 258 14 85 486 91 536 3.81e-41 155
Msa0448230 MtrunA17_Chr4g0028241 28.329 413 264 14 91 486 92 489 6.33e-39 147
Msa0448230 MtrunA17_Chr2g0327371 27.617 449 250 17 91 486 86 512 9.88e-39 147
Msa0448230 MtrunA17_Chr3g0093971 25.115 434 292 15 75 485 27 450 2.15e-37 142
Msa0448230 MtrunA17_Chr4g0044051 29.665 418 251 16 82 480 39 432 1.38e-36 140
Msa0448230 MtrunA17_Chr4g0009721 24.065 428 270 13 74 489 35 419 1.83e-28 117
Msa0448230 MtrunA17_Chr1g0165821 37.662 154 88 3 342 490 28 178 5.06e-26 104
Msa0448230 MtrunA17_Chr2g0279371 34.737 190 99 5 57 241 14 183 1.06e-23 98.2
Msa0448230 MtrunA17_Chr7g0229631 48.454 97 47 2 72 168 31 124 5.85e-23 95.1
Msa0448230 MtrunA17_Chr7g0229611 50.000 76 37 1 74 149 25 99 6.33e-19 82.0
Msa0448230 MtrunA17_Chr4g0027731 22.902 441 280 12 87 485 32 454 7.11e-18 86.3
Msa0448230 MtrunA17_Chr7g0229621 47.436 78 40 1 72 149 23 99 1.81e-17 78.2
Msa0448230 MtrunA17_Chr7g0229651 28.022 182 118 5 254 422 1 182 8.11e-17 79.0
Msa0448230 MtrunA17_Chr2g0281631 51.852 54 26 0 73 126 44 97 1.53e-12 64.7
Msa0448230 MtrunA17_Chr2g0320571 24.895 478 278 18 51 480 16 460 2.16e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448230 AT3G63470.1 61.411 482 174 5 21 494 24 501 0.0 628
Msa0448230 AT3G52020.1 47.390 498 242 11 9 492 9 500 9.54e-163 471
Msa0448230 AT4G30610.1 52.740 438 187 7 70 490 28 462 9.11e-160 462
Msa0448230 AT5G08260.1 50.336 447 201 4 65 490 30 476 2.86e-158 458
Msa0448230 AT3G52000.1 48.780 492 228 12 7 492 8 481 5.77e-157 455
Msa0448230 AT3G02110.1 48.980 441 201 7 71 490 34 471 1.71e-154 448
Msa0448230 AT3G07990.1 50.465 430 203 5 72 492 31 459 1.55e-153 446
Msa0448230 AT5G23210.1 49.889 451 194 6 70 490 47 495 2.17e-153 447
Msa0448230 AT2G35780.1 49.885 433 201 8 70 491 25 452 2.37e-152 442
Msa0448230 AT2G24010.1 49.884 431 201 7 70 490 26 451 8.66e-152 441
Msa0448230 AT2G05850.1 46.787 498 234 12 7 492 8 486 1.67e-151 441
Msa0448230 AT2G24000.1 48.741 437 205 6 70 489 26 460 3.43e-149 435
Msa0448230 AT4G30810.1 46.977 430 217 5 70 489 33 461 1.35e-147 431
Msa0448230 AT3G52010.1 45.509 501 249 10 1 492 1 486 1.37e-147 431
Msa0448230 AT2G24010.2 47.982 446 202 8 70 490 26 466 3.42e-146 427
Msa0448230 AT1G61130.1 46.785 451 223 6 58 493 15 463 1.39e-144 423
Msa0448230 AT1G11080.1 45.492 488 233 8 37 493 7 492 3.60e-142 418
Msa0448230 AT1G11080.2 45.492 488 233 8 37 493 7 492 4.01e-142 418
Msa0448230 AT2G35770.1 48.869 442 217 7 57 490 18 458 1.81e-141 415
Msa0448230 AT4G15100.1 47.523 444 206 8 70 489 40 480 2.92e-140 413
Msa0448230 AT2G24010.3 45.494 466 199 9 75 490 2 462 5.47e-139 409
Msa0448230 AT5G23210.3 49.507 406 174 5 70 445 47 451 1.65e-136 402
Msa0448230 AT5G23210.5 49.246 398 170 6 123 490 5 400 8.99e-129 380
Msa0448230 AT5G23210.2 49.239 394 168 6 127 490 8 399 9.17e-128 378
Msa0448230 AT3G17180.1 43.468 444 226 8 70 490 34 475 3.27e-122 366
Msa0448230 AT2G12480.3 43.908 435 232 5 67 490 24 457 1.05e-120 362
Msa0448230 AT1G43780.1 43.891 442 229 8 67 490 30 470 8.76e-120 360
Msa0448230 AT5G42240.1 44.218 441 226 8 68 490 26 464 3.64e-119 358
Msa0448230 AT2G33530.1 42.955 440 228 9 69 490 28 462 2.84e-116 350
Msa0448230 AT1G28110.1 43.318 434 225 8 73 490 30 458 2.67e-115 348
Msa0448230 AT1G28110.2 43.318 434 225 8 73 490 30 458 2.67e-115 348
Msa0448230 AT2G12480.4 43.023 430 219 6 67 490 24 433 5.44e-115 347
Msa0448230 AT2G12480.1 42.890 429 219 6 67 490 24 431 1.04e-113 343
Msa0448230 AT5G42230.1 43.311 441 230 8 68 490 22 460 1.80e-112 341
Msa0448230 AT5G42230.2 43.311 441 230 8 68 490 22 460 1.80e-112 341
Msa0448230 AT2G12480.2 42.791 430 219 7 67 490 24 432 6.83e-112 338
Msa0448230 AT5G23210.4 48.711 349 148 5 127 445 8 355 1.02e-110 333
Msa0448230 AT2G24010.4 46.240 359 164 7 75 408 2 356 1.32e-107 325
Msa0448230 AT3G17180.2 41.975 405 210 8 70 451 34 436 7.14e-106 323
Msa0448230 AT3G56540.1 56.223 233 96 2 1 228 1 232 3.83e-86 266
Msa0448230 AT4G12910.1 34.681 470 253 8 71 489 31 497 4.08e-84 269
Msa0448230 AT3G25420.1 34.409 465 249 10 75 486 30 491 2.54e-80 259
Msa0448230 AT4G12910.2 33.879 428 229 8 71 447 31 455 2.79e-70 231
Msa0448230 AT2G24000.2 41.993 281 145 5 225 489 119 397 1.33e-67 223
Msa0448230 AT2G24000.2 58.696 92 37 1 70 160 26 117 5.87e-31 124
Msa0448230 AT2G22990.1 30.445 427 269 10 75 489 23 433 1.28e-59 202
Msa0448230 AT2G22920.2 32.009 428 255 13 75 486 25 432 2.70e-59 202
Msa0448230 AT2G22970.1 31.235 429 261 12 75 489 25 433 3.08e-59 201
Msa0448230 AT2G23000.1 30.930 430 265 13 75 489 25 437 1.48e-57 197
Msa0448230 AT2G23000.2 30.930 430 265 13 75 489 25 437 1.48e-57 197
Msa0448230 AT1G73290.1 30.211 427 266 11 75 489 32 438 6.00e-57 196
Msa0448230 AT2G23010.2 29.091 440 294 10 58 489 8 437 3.31e-56 194
Msa0448230 AT1G73300.1 29.954 434 260 14 75 489 33 441 5.51e-56 193
Msa0448230 AT1G73300.2 29.954 434 260 14 75 489 33 441 5.51e-56 193
Msa0448230 AT2G23010.1 29.091 440 294 10 58 489 8 437 9.01e-56 192
Msa0448230 AT2G22970.3 31.695 407 245 11 75 467 25 412 1.31e-55 192
Msa0448230 AT2G22990.3 30.456 417 263 9 75 479 23 424 1.66e-55 192
Msa0448230 AT1G73270.2 29.837 429 267 12 75 489 33 441 2.57e-55 191
Msa0448230 AT1G73270.1 29.837 429 267 12 75 489 33 441 3.74e-55 191
Msa0448230 AT2G22990.4 30.750 400 250 9 75 462 23 407 4.82e-55 190
Msa0448230 AT2G22970.4 31.436 404 244 11 75 464 25 409 1.28e-54 189
Msa0448230 AT5G36180.1 29.837 429 267 12 75 489 33 441 3.84e-54 188
Msa0448230 AT2G22990.5 29.508 427 264 11 75 489 23 424 8.72e-54 187
Msa0448230 AT1G33540.1 27.778 450 296 11 65 489 19 464 1.74e-53 187
Msa0448230 AT1G73280.1 28.761 452 278 13 57 489 15 441 2.11e-53 186
Msa0448230 AT3G10450.1 28.671 429 272 11 75 489 29 437 2.25e-53 186
Msa0448230 AT3G12203.1 30.110 455 273 12 51 489 12 437 1.19e-52 184
Msa0448230 AT3G10450.2 28.710 411 260 10 92 489 4 394 1.91e-52 182
Msa0448230 AT1G33540.2 27.725 422 277 10 92 489 4 421 3.80e-52 182
Msa0448230 AT3G12203.3 30.394 431 261 11 75 489 9 416 4.54e-52 182
Msa0448230 AT2G22920.1 32.308 390 229 12 75 448 25 395 2.80e-51 180
Msa0448230 AT2G22980.1 29.138 429 266 14 75 489 26 430 1.31e-50 179
Msa0448230 AT3G12220.1 32.084 427 260 14 75 489 27 435 7.83e-50 177
Msa0448230 AT3G12230.1 31.059 425 267 13 75 489 27 435 1.00e-49 176
Msa0448230 AT3G12203.2 30.348 402 242 10 103 489 1 379 1.40e-49 174
Msa0448230 AT1G73310.1 28.806 427 274 12 75 489 33 441 3.47e-49 175
Msa0448230 AT3G45010.1 30.679 427 256 16 80 486 92 498 7.17e-49 176
Msa0448230 AT3G12240.1 31.059 425 267 13 75 489 28 436 1.19e-48 173
Msa0448230 AT3G12220.2 32.029 409 249 13 92 489 15 405 2.21e-48 172
Msa0448230 AT3G10450.4 28.465 404 256 10 75 464 29 413 1.36e-47 170
Msa0448230 AT5G09640.1 27.692 455 273 15 75 489 27 465 1.37e-47 171
Msa0448230 AT2G22980.2 29.455 404 248 13 75 464 26 406 2.93e-47 169
Msa0448230 AT2G22980.4 29.484 407 250 13 75 467 26 409 3.68e-47 169
Msa0448230 AT1G73290.3 29.534 386 241 10 75 448 32 398 3.86e-47 169
Msa0448230 AT3G10450.3 28.497 386 244 9 92 464 4 370 2.02e-46 166
Msa0448230 AT5G22980.1 28.640 419 269 14 82 486 91 493 1.19e-44 164
Msa0448230 AT3G10410.1 30.353 425 254 17 80 484 90 492 2.13e-44 164
Msa0448230 AT1G73310.2 28.462 390 250 11 75 452 33 405 7.57e-42 155
Msa0448230 AT2G22990.2 29.429 333 214 7 163 489 2 319 1.91e-41 151
Msa0448230 AT2G22990.6 29.429 333 214 7 163 489 2 319 4.43e-41 150
Msa0448230 AT2G22920.4 32.353 306 176 9 75 366 25 313 2.91e-40 147
Msa0448230 AT5G36180.5 28.940 349 217 10 151 489 12 339 4.11e-39 145
Msa0448230 AT5G36180.3 28.940 349 217 10 151 489 12 339 4.11e-39 145
Msa0448230 AT2G22970.2 32.353 306 175 10 75 366 25 312 2.30e-38 142
Msa0448230 AT1G15000.1 30.072 419 261 13 82 489 29 426 3.30e-38 145
Msa0448230 AT1G73290.2 31.298 262 172 5 75 330 32 291 1.14e-37 140
Msa0448230 AT1G73280.4 27.841 352 217 9 151 489 12 339 1.26e-37 141
Msa0448230 AT1G73280.2 30.935 278 182 6 57 326 15 290 1.73e-34 133
Msa0448230 AT1G73280.3 27.515 338 208 9 165 489 1 314 2.33e-34 131
Msa0448230 AT5G36180.2 28.395 324 202 9 151 464 12 315 8.54e-34 130
Msa0448230 AT2G22980.3 29.874 318 188 11 75 378 26 322 2.11e-33 130
Msa0448230 AT3G12220.3 37.089 213 126 6 75 281 27 237 2.92e-31 124
Msa0448230 AT2G22980.5 27.097 310 196 9 163 464 2 289 2.17e-29 117
Msa0448230 AT5G36180.4 26.844 339 209 9 151 469 12 331 3.71e-29 117
Msa0448230 AT1G73310.3 26.948 308 203 7 151 452 12 303 1.58e-27 113
Msa0448230 AT2G22920.3 29.044 272 165 8 228 489 3 256 1.36e-24 103
Msa0448230 AT5G22960.1 34.682 173 88 6 80 250 25 174 2.23e-23 97.8
Msa0448230 AT2G27920.1 23.146 445 266 15 87 480 33 452 6.94e-18 86.7
Msa0448230 AT2G22960.1 30.370 135 91 3 355 489 53 184 3.74e-14 71.2

Find 114 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATTATGCATTTCTTAAA+TGG 0.158114 3_3:-27773860 Msa0448230:CDS
TCATATAATCTTTGAGTAAT+AGG 0.237761 3_3:+27773827 None:intergenic
AAACATTGCCTCTTCTTCTT+TGG 0.241096 3_3:-27781756 Msa0448230:CDS
TTGGTATCCTTGGTTCTTTA+AGG 0.242541 3_3:-27774618 Msa0448230:CDS
CCTCTTCTTCTTTGGCTCAA+TGG 0.255465 3_3:-27781748 Msa0448230:CDS
AGATGAACCAATGAAGAATT+TGG 0.259071 3_3:+27782090 None:intergenic
ACACCCTTAATCCACTATTT+AGG 0.270201 3_3:+27775120 None:intergenic
TATTTAGGAGATCATGTAAA+AGG 0.272128 3_3:+27775135 None:intergenic
ATCTCCTAAATAGTGGATTA+AGG 0.274690 3_3:-27775124 Msa0448230:CDS
TATCAACCTCAAAGGAATTA+TGG 0.285850 3_3:-27777646 Msa0448230:intron
CTCTACTTTGTTTGCTTGCA+TGG 0.304228 3_3:+27782031 None:intergenic
TTTCAACCGGGGTGATGTTC+AGG 0.313976 3_3:-27775255 Msa0448230:CDS
TATTCTCTACCACAATAAAA+AGG 0.315086 3_3:-27777682 Msa0448230:CDS
TTGTTCCTTGAGTCCCCAGC+TGG 0.329304 3_3:-27777888 Msa0448230:CDS
CTTTCTCATTATGTCTCTCT+TGG 0.329656 3_3:-27782064 Msa0448230:CDS
AAATCTCTATTCTTATATTC+AGG 0.337407 3_3:+27777759 None:intergenic
TATTGAGAAAATTTCACATT+TGG 0.339504 3_3:+27781856 None:intergenic
GAATCTTACCGAGACCTTCT+TGG 0.349259 3_3:+27775830 None:intergenic
AATAGAGATTTCTACATTGC+TGG 0.349978 3_3:-27777747 Msa0448230:CDS
GAGCAAACCAAATTCTTCAT+TGG 0.359214 3_3:-27782097 Msa0448230:CDS
AATCTTACCGAGACCTTCTT+GGG 0.360461 3_3:+27775831 None:intergenic
AATAACTATTCATGGAACTA+TGG 0.364693 3_3:-27778174 Msa0448230:intron
GCAGTACTATCATTCCAAAC+TGG 0.365422 3_3:-27775184 Msa0448230:CDS
TGGTATCCTTGGTTCTTTAA+GGG 0.366747 3_3:-27774617 Msa0448230:CDS
TTACATGATCTCCTAAATAG+TGG 0.382378 3_3:-27775131 Msa0448230:CDS
ATGTACAAGCATATTTCAAC+CGG 0.390329 3_3:-27775268 Msa0448230:CDS
CACATACCATAATTCCTTTG+AGG 0.398233 3_3:+27777640 None:intergenic
ACTGCACTCAGTAGTTTGAT+TGG 0.398551 3_3:+27775947 None:intergenic
TTTCATGTGAAACAGGTTGC+TGG 0.403711 3_3:-27773977 Msa0448230:intron
TCACGAAGCTCGATTATGAT+TGG 0.421000 3_3:-27775214 Msa0448230:CDS
TTGAGACAACTTGGTATCCT+TGG 0.423312 3_3:-27774628 Msa0448230:CDS
GCTCTTGCTGGTTGATAACT+TGG 0.428601 3_3:+27773890 None:intergenic
TGTTGATATTATATGCTGTT+TGG 0.433083 3_3:+27775994 None:intergenic
ATTAGAGAGAGGGCTCTTGC+TGG 0.440066 3_3:+27773878 None:intergenic
GACAAGATTGAGAAGCTACC+AGG 0.444816 3_3:-27781883 Msa0448230:CDS
CCCTTCCGTGTGAAGAGTAA+TGG 0.445262 3_3:-27778213 Msa0448230:CDS
TCTCATTATGTCTCTCTTGG+TGG 0.447442 3_3:-27782061 Msa0448230:CDS
CCTTCCGTGTGAAGAGTAAT+GGG 0.448180 3_3:-27778212 Msa0448230:CDS
TCTCCTAAATAGTGGATTAA+GGG 0.450790 3_3:-27775123 Msa0448230:CDS
ATAGAGATTTCTACATTGCT+GGG 0.458056 3_3:-27777746 Msa0448230:CDS
CATCTGATTATGACACCAAT+GGG 0.459802 3_3:-27777839 Msa0448230:CDS
ATTTAGGAGATCATGTAAAA+GGG 0.462631 3_3:+27775136 None:intergenic
GGATGCTCATCTCTTGCCTA+TGG 0.462686 3_3:-27778255 Msa0448230:CDS
TATGAATATCCTACCCCAGC+TGG 0.466534 3_3:+27777873 None:intergenic
AGCTGTTCTTCTATCCCCAT+TGG 0.471573 3_3:+27777824 None:intergenic
TAAATAGTGGATTAAGGGTG+TGG 0.475163 3_3:-27775118 Msa0448230:CDS
TCCTTGGTTCTTTAAGGGAG+AGG 0.476535 3_3:-27774612 Msa0448230:intron
AACTTCTTGCATTGCTCCAT+AGG 0.478248 3_3:+27778239 None:intergenic
AAAAGGGGAATGATTGTTGT+TGG 0.478269 3_3:+27775152 None:intergenic
CACGAAGCTCGATTATGATT+GGG 0.487930 3_3:-27775213 Msa0448230:CDS
ATTGTGTTGATTTGTTATGA+AGG 0.490679 3_3:+27782120 None:intergenic
GGATACCAAGTTGTCTCAAT+GGG 0.492752 3_3:+27774632 None:intergenic
CAGTACTATCATTCCAAACT+GGG 0.497009 3_3:-27775183 Msa0448230:CDS
AGAAATGCATAATTAGAGAG+AGG 0.497036 3_3:+27773867 None:intergenic
AGGATACCAAGTTGTCTCAA+TGG 0.497971 3_3:+27774631 None:intergenic
AATCTTTGAGTAATAGGAAG+AGG 0.499019 3_3:+27773833 None:intergenic
CCCATTACTCTTCACACGGA+AGG 0.500696 3_3:+27778212 None:intergenic
CTTCGTGACATTGGCATGGA+GGG 0.500798 3_3:+27775229 None:intergenic
TGTTCCTTGAGTCCCCAGCT+GGG 0.502648 3_3:-27777887 Msa0448230:CDS
CAAGAGAGACATAATGAGAA+AGG 0.502934 3_3:+27782065 None:intergenic
AGCTTCCCATTGAGACAACT+TGG 0.503838 3_3:-27774637 Msa0448230:CDS
AATTTCACATTTGGTTGCCC+TGG 0.504435 3_3:+27781865 None:intergenic
TGATACAGTGGTGATATAGA+TGG 0.510610 3_3:-27774704 Msa0448230:intron
CTTGAGTCCCCAGCTGGGGT+AGG 0.518621 3_3:-27777882 Msa0448230:CDS
TAGGCAAGAGATGAGCATCC+AGG 0.518987 3_3:+27778258 None:intergenic
CATAGATGTTGTATATATCA+AGG 0.519966 3_3:+27775889 None:intergenic
GTTTGGAATGATAGTACTGC+AGG 0.522006 3_3:+27775187 None:intergenic
TGGCTATGCTGAAGTATACA+AGG 0.522187 3_3:-27773957 Msa0448230:CDS
TATGGAGCAATGCAAGAAGT+TGG 0.522491 3_3:-27778237 Msa0448230:CDS
ATAATCGAGCTTCGTGACAT+TGG 0.524681 3_3:+27775220 None:intergenic
TTTGCCACAGTGAGAGAAGC+AGG 0.525820 3_3:-27773923 Msa0448230:CDS
ATGAATATCCTACCCCAGCT+GGG 0.526810 3_3:+27777874 None:intergenic
CTACCCCAGCTGGGGACTCA+AGG 0.535108 3_3:+27777883 None:intergenic
CTTCTTCTTTGGCTCAATGG+AGG 0.537092 3_3:-27781745 Msa0448230:intron
ATTGCTGGGGAGAGTTATGC+TGG 0.541193 3_3:-27777732 Msa0448230:CDS
CCATTACTCTTCACACGGAA+GGG 0.549561 3_3:+27778213 None:intergenic
GTTACAGTGGACAAAATAGC+TGG 0.555119 3_3:-27781823 Msa0448230:CDS
TCATCTGATTATGACACCAA+TGG 0.560092 3_3:-27777840 Msa0448230:CDS
CCATTGAGCCAAAGAAGAAG+AGG 0.565040 3_3:+27781748 None:intergenic
GAATATTGTGCTTGATGCAA+TGG 0.567607 3_3:-27781935 Msa0448230:CDS
CAGTGGTGATATAGATGGAA+GGG 0.568514 3_3:-27774699 Msa0448230:CDS
GCAATGGTTCATTCTCAAGA+TGG 0.570538 3_3:-27781919 Msa0448230:CDS
TAACCGTCCCAAGAAGGTCT+CGG 0.571130 3_3:-27775838 Msa0448230:intron
CCTTCTTGGGACGGTTAGTG+AGG 0.573681 3_3:+27775844 None:intergenic
GTTCCTTGAGTCCCCAGCTG+GGG 0.580944 3_3:-27777886 Msa0448230:CDS
GAAATGCATAATTAGAGAGA+GGG 0.583439 3_3:+27773868 None:intergenic
TTACCGAGACCTTCTTGGGA+CGG 0.584125 3_3:+27775835 None:intergenic
AGAATATTGTGTGCAAGTTG+AGG 0.589607 3_3:+27777699 None:intergenic
TGTACATAATCGTCACTGCA+TGG 0.591663 3_3:+27775284 None:intergenic
ACCTCTCCCTTAAAGAACCA+AGG 0.595237 3_3:+27774611 None:intergenic
AAATAGTGGATTAAGGGTGT+GGG 0.599048 3_3:-27775117 Msa0448230:CDS
CGAGCTTCGTGACATTGGCA+TGG 0.601093 3_3:+27775225 None:intergenic
GCTTCGTGACATTGGCATGG+AGG 0.601762 3_3:+27775228 None:intergenic
AGGACAATTATCAACCTCAA+AGG 0.606041 3_3:-27777654 Msa0448230:CDS
AGGTTGTGATTAGTGCAGAC+TGG 0.606106 3_3:+27775864 None:intergenic
CCTCACTAACCGTCCCAAGA+AGG 0.610012 3_3:-27775844 Msa0448230:CDS
ACAGTGGTGATATAGATGGA+AGG 0.610436 3_3:-27774700 Msa0448230:intron
TGTACAAGCATATTTCAACC+GGG 0.611855 3_3:-27775267 Msa0448230:CDS
GTACTATCATTCCAAACTGG+GGG 0.612094 3_3:-27775181 Msa0448230:CDS
TTTAGGAGATCATGTAAAAG+GGG 0.613399 3_3:+27775137 None:intergenic
ACAAGATTGAGAAGCTACCA+GGG 0.626619 3_3:-27781882 Msa0448230:CDS
CAACCGGGGTGATGTTCAGG+AGG 0.629672 3_3:-27775252 Msa0448230:CDS
AATGATGACACAGATGAGCA+AGG 0.634580 3_3:-27776056 Msa0448230:CDS
GGGCCTCCTGAACATCACCC+CGG 0.634891 3_3:+27775249 None:intergenic
TAGAGATTTCTACATTGCTG+GGG 0.642047 3_3:-27777745 Msa0448230:CDS
GGCTATGCTGAAGTATACAA+GGG 0.656209 3_3:-27773956 Msa0448230:CDS
TGAATATCCTACCCCAGCTG+GGG 0.656224 3_3:+27777875 None:intergenic
ATATGGAGGGTATGTTACAG+TGG 0.667375 3_3:-27781836 Msa0448230:CDS
AGTACTATCATTCCAAACTG+GGG 0.684965 3_3:-27775182 Msa0448230:CDS
GTACAAGCATATTTCAACCG+GGG 0.691004 3_3:-27775266 Msa0448230:CDS
ATGTCCTGCTTCTCTCACTG+TGG 0.691209 3_3:+27773919 None:intergenic
TATGCTGAAGTATACAAGGG+AGG 0.695333 3_3:-27773953 Msa0448230:CDS
TACTATCATTCCAAACTGGG+GGG 0.701562 3_3:-27775180 Msa0448230:CDS
ATCTGATTATGACACCAATG+GGG 0.750512 3_3:-27777838 Msa0448230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTAATTTTAATTATAA+TGG - chr3_3:27779337-27779356 Msa0448230:intron 0.0%
!! AGTTAAATATTAAGATAAAT+GGG + chr3_3:27774525-27774544 None:intergenic 10.0%
!! AAGTTAAATATTAAGATAAA+TGG + chr3_3:27774526-27774545 None:intergenic 10.0%
!! ATTTATCTTAATATTTAACT+TGG - chr3_3:27774525-27774544 Msa0448230:intron 10.0%
!! TAAAGACTTATATATAATTT+GGG + chr3_3:27775448-27775467 None:intergenic 10.0%
!!! TTTTTATATAATGTCTTTAT+AGG - chr3_3:27775490-27775509 Msa0448230:intron 10.0%
!!! GATATTTTTTTTTTTTAACT+CGG - chr3_3:27775900-27775919 Msa0448230:CDS 10.0%
!!! TATTTTTCTTTCTTTTTTTA+AGG + chr3_3:27776697-27776716 None:intergenic 10.0%
!!! TTTAAACAACAATAATTTTT+TGG + chr3_3:27776727-27776746 None:intergenic 10.0%
!! GACTATAAATTAAAAATAAA+GGG + chr3_3:27777254-27777273 None:intergenic 10.0%
!! TGACTATAAATTAAAAATAA+AGG + chr3_3:27777255-27777274 None:intergenic 10.0%
!!! ATGAAATTATTTAGTTTTTT+AGG - chr3_3:27777596-27777615 Msa0448230:intron 10.0%
!!! TTTCTTATTTCTTTTTTAAT+TGG - chr3_3:27779258-27779277 Msa0448230:intron 10.0%
!!! TTCTTATTTCTTTTTTAATT+GGG - chr3_3:27779259-27779278 Msa0448230:intron 10.0%
!! AGTTGAATAATAAAATAATA+AGG - chr3_3:27779409-27779428 Msa0448230:intron 10.0%
!!! ATTTAATTTTTCCATTTATT+TGG + chr3_3:27780583-27780602 None:intergenic 10.0%
!!! TTTTGAATTTATATTGTACT+TGG + chr3_3:27773968-27773987 None:intergenic 15.0%
!! GTTAAATATTAAGATAAATG+GGG + chr3_3:27774524-27774543 None:intergenic 15.0%
!!! AAGAAAATGTTTCAATTTTT+GGG + chr3_3:27774742-27774761 None:intergenic 15.0%
!!! TAAGAAAATGTTTCAATTTT+TGG + chr3_3:27774743-27774762 None:intergenic 15.0%
!! TTGTGACAAATTATTTAAAT+GGG + chr3_3:27775185-27775204 None:intergenic 15.0%
!! TTTGTGACAAATTATTTAAA+TGG + chr3_3:27775186-27775205 None:intergenic 15.0%
!!! AGTTTAAATTTTTTGTTTAG+AGG - chr3_3:27775211-27775230 Msa0448230:CDS 15.0%
!! AAAGACTTATATATAATTTG+GGG + chr3_3:27775447-27775466 None:intergenic 15.0%
!! GTAAAGACTTATATATAATT+TGG + chr3_3:27775449-27775468 None:intergenic 15.0%
!! AAAATAGATATTATTTGTAG+AGG - chr3_3:27775661-27775680 Msa0448230:intron 15.0%
!! TTCTATATTTACTAAGTTAT+TGG - chr3_3:27775852-27775871 Msa0448230:CDS 15.0%
!!! CTAATTTGTCTATAAAATTT+TGG - chr3_3:27775970-27775989 Msa0448230:CDS 15.0%
!!! TTTTAAAAAGATCAAAATAG+AGG + chr3_3:27776129-27776148 None:intergenic 15.0%
!! TTCAAAATTATAAACATCAA+TGG + chr3_3:27776292-27776311 None:intergenic 15.0%
!!! ATCTATAAATATCGATTTAT+CGG - chr3_3:27776874-27776893 Msa0448230:intron 15.0%
!!! ATAATTTTTCTGAGAATATA+AGG + chr3_3:27776970-27776989 None:intergenic 15.0%
!!! TTAATTAATGTGTCTTTTAT+AGG - chr3_3:27777213-27777232 Msa0448230:intron 15.0%
!! GAAATGAAAAATATAAAATG+TGG + chr3_3:27778752-27778771 None:intergenic 15.0%
!! TTAATTGGGTTTATTAAATT+TGG - chr3_3:27778944-27778963 Msa0448230:intron 15.0%
!! TTTATTATTCAACTAACTAT+TGG + chr3_3:27779403-27779422 None:intergenic 15.0%
!! ATGATAAATTTGATATACAT+TGG - chr3_3:27779683-27779702 Msa0448230:intron 15.0%
!!! ATTTTATATTCAAGTATGAA+GGG - chr3_3:27779762-27779781 Msa0448230:intron 15.0%
!!! TGATTTTTCTTATAGAAATT+AGG - chr3_3:27780172-27780191 Msa0448230:intron 15.0%
!!! GATTTTTCTTATAGAAATTA+GGG - chr3_3:27780173-27780192 Msa0448230:intron 15.0%
!! TATTGAGAAAATTTCACATT+TGG + chr3_3:27774099-27774118 None:intergenic 20.0%
!!! AATGTGAAATTTTCTCAATA+TGG - chr3_3:27774099-27774118 Msa0448230:intron 20.0%
!!! AATTTAGGATAGTTTATGTA+AGG + chr3_3:27774316-27774335 None:intergenic 20.0%
!!! TAAACTATCCTAAATTTTAG+TGG - chr3_3:27774320-27774339 Msa0448230:intron 20.0%
!! CCTTGATATTACTAAAATTT+AGG + chr3_3:27774371-27774390 None:intergenic 20.0%
!!! CCTAAATTTTAGTAATATCA+AGG - chr3_3:27774368-27774387 Msa0448230:intron 20.0%
!!! TACAATGATTAAACTTTTTG+TGG + chr3_3:27774416-27774435 None:intergenic 20.0%
!! TAATTATGTCCTTAATTGTT+AGG + chr3_3:27774481-27774500 None:intergenic 20.0%
!! TACATTGTTGATACATATAA+AGG - chr3_3:27774677-27774696 Msa0448230:CDS 20.0%
!! ACATTGTTGATACATATAAA+GGG - chr3_3:27774678-27774697 Msa0448230:CDS 20.0%
!! TTAGATCTATCAAGAATTTA+GGG + chr3_3:27774883-27774902 None:intergenic 20.0%
!!! GTTATCTGTTTTGAATTATA+TGG - chr3_3:27775273-27775292 Msa0448230:CDS 20.0%
!!! TTTTCTGTTTTTACTCTTTT+GGG + chr3_3:27775401-27775420 None:intergenic 20.0%
!!! ATTTTCTGTTTTTACTCTTT+TGG + chr3_3:27775402-27775421 None:intergenic 20.0%
!!! ATATCATTAGTTTTCTATGT+TGG - chr3_3:27775588-27775607 Msa0448230:intron 20.0%
!!! TATCATTAGTTTTCTATGTT+GGG - chr3_3:27775589-27775608 Msa0448230:intron 20.0%
!! AATTATAACAAAACATGCTA+GGG + chr3_3:27775834-27775853 None:intergenic 20.0%
!! ATATTTACTAATTCAATGTC+AGG - chr3_3:27775937-27775956 Msa0448230:CDS 20.0%
!! AAGAATATAATTAGAGTGAA+TGG + chr3_3:27776326-27776345 None:intergenic 20.0%
!! TGTTTAAATATCATTACTCA+AGG - chr3_3:27776739-27776758 Msa0448230:intron 20.0%
!! GTTTAAATATCATTACTCAA+GGG - chr3_3:27776740-27776759 Msa0448230:intron 20.0%
!!! TTAGTATTGAAAGTATTCTT+GGG + chr3_3:27776905-27776924 None:intergenic 20.0%
!!! AAGGATGATAATTTTATTCT+CGG + chr3_3:27776951-27776970 None:intergenic 20.0%
!! AAAGAAATAAAATAAGTCAC+CGG - chr3_3:27777139-27777158 Msa0448230:intron 20.0%
!!! ATTTTTCATTTCTCTTTCAA+AGG - chr3_3:27777670-27777689 Msa0448230:CDS 20.0%
!!! TGAATAGTTATTTTTGTGAA+GGG + chr3_3:27777770-27777789 None:intergenic 20.0%
!!! ATGAATAGTTATTTTTGTGA+AGG + chr3_3:27777771-27777790 None:intergenic 20.0%
!! TTCACAAAAATAACTATTCA+TGG - chr3_3:27777770-27777789 Msa0448230:CDS 20.0%
!!! TGTTAGTTTTTAATATCCAA+AGG + chr3_3:27777861-27777880 None:intergenic 20.0%
!!! ATTGTCATTTTATCTATCTA+CGG + chr3_3:27777909-27777928 None:intergenic 20.0%
!! AAATCTCTATTCTTATATTC+AGG + chr3_3:27778196-27778215 None:intergenic 20.0%
!!! TCTTCTATTTGTTATCAAAT+TGG - chr3_3:27778354-27778373 Msa0448230:intron 20.0%
!!! TGATGGTGAAAAATAAAATT+AGG - chr3_3:27778510-27778529 Msa0448230:intron 20.0%
!! TTAAATGAGACAACATTAAA+TGG + chr3_3:27778774-27778793 None:intergenic 20.0%
!!! TTCTTTTGTTACAATAAGAT+TGG - chr3_3:27778835-27778854 Msa0448230:intron 20.0%
!!! TCTTTTGTTACAATAAGATT+GGG - chr3_3:27778836-27778855 Msa0448230:intron 20.0%
!!! GTTTATTAAATTTGGAATCA+TGG - chr3_3:27778952-27778971 Msa0448230:intron 20.0%
!!! AAATAGTTGATGTTTTGTTT+TGG - chr3_3:27779191-27779210 Msa0448230:intron 20.0%
!!! TTGTTGATGTTTTTTCTTTT+TGG - chr3_3:27779221-27779240 Msa0448230:intron 20.0%
!!! TGTTGATGTTTTTTCTTTTT+GGG - chr3_3:27779222-27779241 Msa0448230:intron 20.0%
!! TATAATCAAATTATGTGCTT+TGG + chr3_3:27779449-27779468 None:intergenic 20.0%
!! AATTTGATATACATTGGAAA+TGG - chr3_3:27779689-27779708 Msa0448230:intron 20.0%
!!! GATTTTATATTCAAGTATGA+AGG - chr3_3:27779761-27779780 Msa0448230:intron 20.0%
!! TTATATTATATGCACAGATT+GGG - chr3_3:27779861-27779880 Msa0448230:intron 20.0%
!!! TGTGTTTTATTTGTAAAGAA+AGG + chr3_3:27780370-27780389 None:intergenic 20.0%
!! ATTAGTTCAAACCAAATAAA+TGG - chr3_3:27780569-27780588 Msa0448230:intron 20.0%
!!! TATTTTAAATGTGAAGAAGT+GGG + chr3_3:27781134-27781153 None:intergenic 20.0%
!!! ATATTTTAAATGTGAAGAAG+TGG + chr3_3:27781135-27781154 None:intergenic 20.0%
!! ATATAATACTTATGGAAACA+AGG + chr3_3:27781427-27781446 None:intergenic 20.0%
!!! GTATAATTAACATTTTGTTG+GGG + chr3_3:27781477-27781496 None:intergenic 20.0%
!!! CGTATAATTAACATTTTGTT+GGG + chr3_3:27781478-27781497 None:intergenic 20.0%
!!! TCGTATAATTAACATTTTGT+TGG + chr3_3:27781479-27781498 None:intergenic 20.0%
!! AAATAAATCAAATCAACACT+AGG + chr3_3:27781689-27781708 None:intergenic 20.0%
!!! AAAGAGAAAAATTTCTTTTC+CGG - chr3_3:27781723-27781742 Msa0448230:intron 20.0%
!!! TCAACTTAAAAGTTTTTCTT+TGG - chr3_3:27781746-27781765 Msa0448230:CDS 20.0%
!! CTAATTATGCATTTCTTAAA+TGG - chr3_3:27782092-27782111 Msa0448230:CDS 20.0%
!! TCATATAATCTTTGAGTAAT+AGG + chr3_3:27782128-27782147 None:intergenic 20.0%
!!! ATTGTGTTGATTTGTTATGA+AGG + chr3_3:27773835-27773854 None:intergenic 25.0%
!! TGAAATTTTCTCAATATGGA+GGG - chr3_3:27774103-27774122 Msa0448230:intron 25.0%
!!! TGCTTTTTACTATTACTTTG+TGG - chr3_3:27774155-27774174 Msa0448230:intron 25.0%
!! TTTAGTCTTCCTAACAATTA+AGG - chr3_3:27774469-27774488 Msa0448230:intron 25.0%
! AATTAATGATCGTTTGTGAT+TGG + chr3_3:27774586-27774605 None:intergenic 25.0%
! CTTAGATCTATCAAGAATTT+AGG + chr3_3:27774884-27774903 None:intergenic 25.0%
!! GTACACTTAACTAGAATTTT+AGG + chr3_3:27775241-27775260 None:intergenic 25.0%
! TAGTTAAGTGTACATTCTAT+GGG - chr3_3:27775248-27775267 Msa0448230:CDS 25.0%
! AAAAGTAGTATTACTAACTC+TGG + chr3_3:27775346-27775365 None:intergenic 25.0%
!!! TTTCTGTTTTTACTCTTTTG+GGG + chr3_3:27775400-27775419 None:intergenic 25.0%
! AGAGTAAAAACAGAAAATTG+TGG - chr3_3:27775404-27775423 Msa0448230:intron 25.0%
! GAGTAAAAACAGAAAATTGT+GGG - chr3_3:27775405-27775424 Msa0448230:intron 25.0%
!! TCTTTTATAATCACTTTGCA+TGG - chr3_3:27775562-27775581 Msa0448230:intron 25.0%
!!! TCAATCTCTCTTTTAAGTTA+TGG + chr3_3:27775738-27775757 None:intergenic 25.0%
! GAATTATAACAAAACATGCT+AGG + chr3_3:27775835-27775854 None:intergenic 25.0%
!!! TTGATTTGCATATGAAACTT+TGG + chr3_3:27776161-27776180 None:intergenic 25.0%
! TCTTCAATAATTAGAGACTA+TGG + chr3_3:27776252-27776271 None:intergenic 25.0%
!!! CGTTTGTTTCAAGTTATATT+TGG - chr3_3:27776764-27776783 Msa0448230:intron 25.0%
! AAGTTATATTTGGAGATTCA+TGG - chr3_3:27776774-27776793 Msa0448230:intron 25.0%
! AGTTATATTTGGAGATTCAT+GGG - chr3_3:27776775-27776794 Msa0448230:intron 25.0%
! GAATAAAGTTCTCATAAAGA+TGG - chr3_3:27776831-27776850 Msa0448230:intron 25.0%
!!! GTTAGTATTGAAAGTATTCT+TGG + chr3_3:27776906-27776925 None:intergenic 25.0%
!! ACTAACTAAACACATTTTCT+CGG - chr3_3:27776920-27776939 Msa0448230:intron 25.0%
!! AGGATGATAATTTTATTCTC+GGG + chr3_3:27776950-27776969 None:intergenic 25.0%
! TTGTGGTATAAAATATTGAG+GGG + chr3_3:27777006-27777025 None:intergenic 25.0%
! CTTGTGGTATAAAATATTGA+GGG + chr3_3:27777007-27777026 None:intergenic 25.0%
! ATCCCAATAAATTCTTATAC+CGG + chr3_3:27777161-27777180 None:intergenic 25.0%
!!! TTATAGTCATTTTCTGATGA+TGG - chr3_3:27777266-27777285 Msa0448230:intron 25.0%
! ATGTGTATGTTAATTAAGCT+TGG - chr3_3:27777325-27777344 Msa0448230:intron 25.0%
! ATAAAATTACATCAAGTGGA+GGG + chr3_3:27777433-27777452 None:intergenic 25.0%
! AATAAAATTACATCAAGTGG+AGG + chr3_3:27777434-27777453 None:intergenic 25.0%
! TCGAATAAAATTACATCAAG+TGG + chr3_3:27777437-27777456 None:intergenic 25.0%
! AATAACTATTCATGGAACTA+TGG - chr3_3:27777778-27777797 Msa0448230:CDS 25.0%
!!! ACTATGTTTTTTTAGTGAAC+TGG - chr3_3:27778158-27778177 Msa0448230:intron 25.0%
! TATTCTCTACCACAATAAAA+AGG - chr3_3:27778270-27778289 Msa0448230:intron 25.0%
! TGTCCATGATTAATGTTTAA+GGG + chr3_3:27778431-27778450 None:intergenic 25.0%
! AAAATTACAGCCAATCTAAA+AGG - chr3_3:27778461-27778480 Msa0448230:intron 25.0%
! AAATTACAGCCAATCTAAAA+GGG - chr3_3:27778462-27778481 Msa0448230:intron 25.0%
!! TTTGAAAAACCCTTTTAGAT+TGG + chr3_3:27778474-27778493 None:intergenic 25.0%
! ATTTCTCAATTACATCATGA+TGG - chr3_3:27778493-27778512 Msa0448230:intron 25.0%
! ATTCCTAAAAAATCAACCAT+CGG + chr3_3:27778613-27778632 None:intergenic 25.0%
! AGATTTCATAGACTACTAAT+AGG - chr3_3:27778640-27778659 Msa0448230:intron 25.0%
!!! TCATTGGCTATTTTTGTTTT+AGG - chr3_3:27778999-27779018 Msa0448230:intron 25.0%
! ATGTAACAACTAACATTGAA+TGG - chr3_3:27779050-27779069 Msa0448230:intron 25.0%
! CATTATAGATAGATATGTCA+AGG - chr3_3:27779128-27779147 Msa0448230:intron 25.0%
! AAAATAATAAGGTAGCAGAT+TGG - chr3_3:27779420-27779439 Msa0448230:intron 25.0%
!!! TTATCATTTTAACCCTAGTT+AGG + chr3_3:27779670-27779689 None:intergenic 25.0%
!!! TTGGAAATGGATTATAAAGT+TGG - chr3_3:27779702-27779721 Msa0448230:intron 25.0%
! GTTATATTATATGCACAGAT+TGG - chr3_3:27779860-27779879 Msa0448230:intron 25.0%
! TGTTGATATTATATGCTGTT+TGG + chr3_3:27779961-27779980 None:intergenic 25.0%
! CATAGATGTTGTATATATCA+AGG + chr3_3:27780066-27780085 None:intergenic 25.0%
! TTTCTTATAGAAATTAGGGT+TGG - chr3_3:27780177-27780196 Msa0448230:intron 25.0%
! CTTACGATATATAAAACTAG+GGG + chr3_3:27780225-27780244 None:intergenic 25.0%
! CCTTACGATATATAAAACTA+GGG + chr3_3:27780226-27780245 None:intergenic 25.0%
!!! CCTAGTTTTATATATCGTAA+GGG - chr3_3:27780224-27780243 Msa0448230:intron 25.0%
!!! CTAGTTTTATATATCGTAAG+GGG - chr3_3:27780225-27780244 Msa0448230:intron 25.0%
! AACTAATTAAGATCTTGTTC+AGG + chr3_3:27780556-27780575 None:intergenic 25.0%
! ATTTAATCATTATTGTACGC+AGG - chr3_3:27780634-27780653 Msa0448230:intron 25.0%
! ATTTAGGAGATCATGTAAAA+GGG + chr3_3:27780819-27780838 None:intergenic 25.0%
! TATTTAGGAGATCATGTAAA+AGG + chr3_3:27780820-27780839 None:intergenic 25.0%
! TACTTTATTGTAAAGCTGTA+TGG - chr3_3:27780943-27780962 Msa0448230:intron 25.0%
! CAAGATTGTTAGAATAACAA+GGG + chr3_3:27780970-27780989 None:intergenic 25.0%
!! ATTTTAAATGTGAAGAAGTG+GGG + chr3_3:27781133-27781152 None:intergenic 25.0%
! TTATCTATTGTATGATACAG+TGG - chr3_3:27781236-27781255 Msa0448230:intron 25.0%
!!! AGAAAAACTTTTAAGTTGAC+CGG + chr3_3:27781745-27781764 None:intergenic 25.0%
!! ATGAAATTTTCATGTGAAAC+AGG - chr3_3:27781968-27781987 Msa0448230:CDS 25.0%
AGATGAACCAATGAAGAATT+TGG + chr3_3:27773865-27773884 None:intergenic 30.0%
! GTGAAATTTTCTCAATATGG+AGG - chr3_3:27774102-27774121 Msa0448230:intron 30.0%
AATCATTTACTTATGCCTTG+AGG - chr3_3:27774841-27774860 Msa0448230:intron 30.0%
ATCATTTACTTATGCCTTGA+GGG - chr3_3:27774842-27774861 Msa0448230:intron 30.0%
GTTGAAACTAACTGATTGAA+AGG + chr3_3:27775035-27775054 None:intergenic 30.0%
!!! TGTGAACTCACATTCTTTTT+TGG - chr3_3:27775105-27775124 Msa0448230:intron 30.0%
CTAGTTAAGTGTACATTCTA+TGG - chr3_3:27775247-27775266 Msa0448230:CDS 30.0%
GAAAATTGTGGGACATAAAT+TGG - chr3_3:27775416-27775435 Msa0448230:intron 30.0%
GATGGAGGATAATAATATGT+TGG + chr3_3:27775530-27775549 None:intergenic 30.0%
AAGTGTTACATGCACATATA+TGG - chr3_3:27775614-27775633 Msa0448230:intron 30.0%
ATATGGACATGTAACCATAT+AGG - chr3_3:27775631-27775650 Msa0448230:intron 30.0%
TATGGACATGTAACCATATA+GGG - chr3_3:27775632-27775651 Msa0448230:intron 30.0%
!! CTATTTTTCTATGCCCTATA+TGG + chr3_3:27775648-27775667 None:intergenic 30.0%
TTCTTAGAGATTAATTAGCC+AGG + chr3_3:27776047-27776066 None:intergenic 30.0%
CATCAAACGTTATTACATCA+TGG + chr3_3:27776185-27776204 None:intergenic 30.0%
ACACTTAAGAAAAGGTTGAA+AGG + chr3_3:27776492-27776511 None:intergenic 30.0%
GAACACAAACACTTAAGAAA+AGG + chr3_3:27776500-27776519 None:intergenic 30.0%
ATCGAAGGAAAATACTTGAT+TGG + chr3_3:27776548-27776567 None:intergenic 30.0%
!! ATTGAAAGTATTCTTGGGAA+TGG + chr3_3:27776900-27776919 None:intergenic 30.0%
CCTTGTGGTATAAAATATTG+AGG + chr3_3:27777008-27777027 None:intergenic 30.0%
! CCTCAATATTTTATACCACA+AGG - chr3_3:27777005-27777024 Msa0448230:intron 30.0%
TCACCGGTATAAGAATTTAT+TGG - chr3_3:27777155-27777174 Msa0448230:intron 30.0%
CACCGGTATAAGAATTTATT+GGG - chr3_3:27777156-27777175 Msa0448230:intron 30.0%
TTAACATACACATGACTTGA+GGG + chr3_3:27777318-27777337 None:intergenic 30.0%
ATTAACATACACATGACTTG+AGG + chr3_3:27777319-27777338 None:intergenic 30.0%
! ACACTGTGTTATTGTAGTAA+AGG - chr3_3:27777509-27777528 Msa0448230:intron 30.0%
CTGAAAAGAAGATCAATTTG+AGG + chr3_3:27777816-27777835 None:intergenic 30.0%
AGATTCAAAAAAGTCACCTT+TGG - chr3_3:27777842-27777861 Msa0448230:CDS 30.0%
AATAGAGATTTCTACATTGC+TGG - chr3_3:27778205-27778224 Msa0448230:CDS 30.0%
ATAGAGATTTCTACATTGCT+GGG - chr3_3:27778206-27778225 Msa0448230:CDS 30.0%
ACCACAATAAAAAGGCTAAT+AGG - chr3_3:27778278-27778297 Msa0448230:intron 30.0%
!!! TCCTATTAGCCTTTTTATTG+TGG + chr3_3:27778282-27778301 None:intergenic 30.0%
TATCAACCTCAAAGGAATTA+TGG - chr3_3:27778306-27778325 Msa0448230:intron 30.0%
ATGCCCTTAAACATTAATCA+TGG - chr3_3:27778425-27778444 Msa0448230:intron 30.0%
GTGTCCATGATTAATGTTTA+AGG + chr3_3:27778432-27778451 None:intergenic 30.0%
TTTCATAGACTACTAATAGG+TGG - chr3_3:27778643-27778662 Msa0448230:intron 30.0%
ATTGGGTTTCCAAATTTATC+TGG - chr3_3:27778853-27778872 Msa0448230:intron 30.0%
TTGGGTTTCCAAATTTATCT+GGG - chr3_3:27778854-27778873 Msa0448230:intron 30.0%
TATGAATCACGTAACAAACT+TGG + chr3_3:27778912-27778931 None:intergenic 30.0%
AACATTGAATGGTCTCTATA+TGG - chr3_3:27779061-27779080 Msa0448230:intron 30.0%
TCTATCTATAATGTCTAACC+AGG + chr3_3:27779121-27779140 None:intergenic 30.0%
TAGATATGTCAAGGAAAAAC+CGG - chr3_3:27779137-27779156 Msa0448230:intron 30.0%
ACTATGCTACAAGTAATCTT+TGG + chr3_3:27779171-27779190 None:intergenic 30.0%
! TTTCTACTAAGAGCATAAAG+TGG - chr3_3:27779513-27779532 Msa0448230:intron 30.0%
AGCAAGTATTCAACACTAAT+TGG - chr3_3:27779540-27779559 Msa0448230:intron 30.0%
AGTTGTTCTAATTCCTAACT+AGG - chr3_3:27779654-27779673 Msa0448230:intron 30.0%
GTTGTTCTAATTCCTAACTA+GGG - chr3_3:27779655-27779674 Msa0448230:intron 30.0%
! AAATCTTAGCAAGTGTCATT+TGG + chr3_3:27779746-27779765 None:intergenic 30.0%
GATTCAAATTTCCTTTCAAG+TGG - chr3_3:27780140-27780159 Msa0448230:intron 30.0%
!!! CCCTAGTTTTATATATCGTA+AGG - chr3_3:27780223-27780242 Msa0448230:intron 30.0%
CCCTTACGATATATAAAACT+AGG + chr3_3:27780227-27780246 None:intergenic 30.0%
TCAACTTAAATCTTTCAGAG+TGG - chr3_3:27780461-27780480 Msa0448230:intron 30.0%
! ATCATACACGTCTTTTACTA+TGG - chr3_3:27780507-27780526 Msa0448230:intron 30.0%
! TATGGCCTTAACTTATAAGT+TGG - chr3_3:27780525-27780544 Msa0448230:intron 30.0%
ACGATCCAACTTATAAGTTA+AGG + chr3_3:27780533-27780552 None:intergenic 30.0%
ATGTACAAGCATATTTCAAC+CGG - chr3_3:27780684-27780703 Msa0448230:intron 30.0%
TTTAGGAGATCATGTAAAAG+GGG + chr3_3:27780818-27780837 None:intergenic 30.0%
TTACATGATCTCCTAAATAG+TGG - chr3_3:27780821-27780840 Msa0448230:intron 30.0%
!! ATCTCCTAAATAGTGGATTA+AGG - chr3_3:27780828-27780847 Msa0448230:intron 30.0%
!! TCTCCTAAATAGTGGATTAA+GGG - chr3_3:27780829-27780848 Msa0448230:intron 30.0%
TTCTCTTTACTTATGACTCT+AGG - chr3_3:27780875-27780894 Msa0448230:intron 30.0%
TCTCTTTACTTATGACTCTA+GGG - chr3_3:27780876-27780895 Msa0448230:intron 30.0%
CCAAGATTGTTAGAATAACA+AGG + chr3_3:27780971-27780990 None:intergenic 30.0%
!! CCTTGTTATTCTAACAATCT+TGG - chr3_3:27780968-27780987 Msa0448230:intron 30.0%
GACATTGCATAATATATGCA+GGG - chr3_3:27781085-27781104 Msa0448230:intron 30.0%
! TTTTGTCAAAAGTAGTCTAG+TGG + chr3_3:27781169-27781188 None:intergenic 30.0%
! GAATATTTTGTTGCAGTAAC+AGG + chr3_3:27781281-27781300 None:intergenic 30.0%
! AATTAACATTTTGTTGGGGT+GGG + chr3_3:27781473-27781492 None:intergenic 30.0%
! TAATTAACATTTTGTTGGGG+TGG + chr3_3:27781474-27781493 None:intergenic 30.0%
TTAATCATCGACAAAGTTGA+TGG + chr3_3:27781799-27781818 None:intergenic 30.0%
GAAATGCATAATTAGAGAGA+GGG + chr3_3:27782087-27782106 None:intergenic 30.0%
AGAAATGCATAATTAGAGAG+AGG + chr3_3:27782088-27782107 None:intergenic 30.0%
AATCTTTGAGTAATAGGAAG+AGG + chr3_3:27782122-27782141 None:intergenic 30.0%
GAGCAAACCAAATTCTTCAT+TGG - chr3_3:27773855-27773874 Msa0448230:CDS 35.0%
CAAGAGAGACATAATGAGAA+AGG + chr3_3:27773890-27773909 None:intergenic 35.0%
CTTTCTCATTATGTCTCTCT+TGG - chr3_3:27773888-27773907 Msa0448230:CDS 35.0%
! GTACTTGGACTTTTGTAGTT+TGG + chr3_3:27773953-27773972 None:intergenic 35.0%
GAATATTGTGCTTGATGCAA+TGG - chr3_3:27774017-27774036 Msa0448230:intron 35.0%
AAACATTGCCTCTTCTTCTT+TGG - chr3_3:27774196-27774215 Msa0448230:intron 35.0%
CCATTGAGCCACTAAAATTT+AGG + chr3_3:27774331-27774350 None:intergenic 35.0%
!! CCTAAATTTTAGTGGCTCAA+TGG - chr3_3:27774328-27774347 Msa0448230:intron 35.0%
!! TCATGTTAACTTGTGTCCTT+AGG - chr3_3:27774701-27774720 Msa0448230:intron 35.0%
!! CATGTTAACTTGTGTCCTTA+GGG - chr3_3:27774702-27774721 Msa0448230:intron 35.0%
GTTTCAACACAATTGCATCT+AGG - chr3_3:27775047-27775066 Msa0448230:intron 35.0%
AAGAATGTGAGTTCACAACA+AGG + chr3_3:27775102-27775121 None:intergenic 35.0%
TATTATCCTCCATCTTCTAG+TGG - chr3_3:27775536-27775555 Msa0448230:intron 35.0%
AAAAGACAACCACTAGAAGA+TGG + chr3_3:27775548-27775567 None:intergenic 35.0%
TAAGGTGTGTCAAAGAAAAG+AGG + chr3_3:27776088-27776107 None:intergenic 35.0%
TTGATGTGAGATCAACATAG+AGG - chr3_3:27776199-27776218 Msa0448230:intron 35.0%
TGATGTGAGATCAACATAGA+GGG - chr3_3:27776200-27776219 Msa0448230:intron 35.0%
AAAGAGTGGTTCAGTTGTAT+GGG - chr3_3:27776361-27776380 Msa0448230:intron 35.0%
TCCTTCGATTATCTAGTGTA+AGG - chr3_3:27776559-27776578 Msa0448230:intron 35.0%
CCTTCGATTATCTAGTGTAA+GGG - chr3_3:27776560-27776579 Msa0448230:intron 35.0%
! ATGTGTCTTTTATAGGCAAG+TGG - chr3_3:27777220-27777239 Msa0448230:intron 35.0%
! TTTTCCCATTACTCTTCACA+CGG + chr3_3:27777747-27777766 None:intergenic 35.0%
TCATCTGATTATGACACCAA+TGG - chr3_3:27778112-27778131 Msa0448230:intron 35.0%
CATCTGATTATGACACCAAT+GGG - chr3_3:27778113-27778132 Msa0448230:intron 35.0%
ATCTGATTATGACACCAATG+GGG - chr3_3:27778114-27778133 Msa0448230:intron 35.0%
TAGAGATTTCTACATTGCTG+GGG - chr3_3:27778207-27778226 Msa0448230:CDS 35.0%
AGAATATTGTGTGCAAGTTG+AGG + chr3_3:27778256-27778275 None:intergenic 35.0%
AGGACAATTATCAACCTCAA+AGG - chr3_3:27778298-27778317 Msa0448230:intron 35.0%
CACATACCATAATTCCTTTG+AGG + chr3_3:27778315-27778334 None:intergenic 35.0%
! TTAAGGGCATAATCAACACA+TGG + chr3_3:27778415-27778434 None:intergenic 35.0%
AAAAAATCAACCATCGGAGA+TGG + chr3_3:27778607-27778626 None:intergenic 35.0%
!!! TCTCCGATGGTTGATTTTTT+AGG - chr3_3:27778607-27778626 Msa0448230:intron 35.0%
TCCTTTGTCTGTGATATCAT+TGG - chr3_3:27778983-27779002 Msa0448230:intron 35.0%
!! TGTTTTAGGTGCTAGTATCA+TGG - chr3_3:27779013-27779032 Msa0448230:intron 35.0%
GGAACAATCCATACTAACTA+TGG + chr3_3:27779100-27779119 None:intergenic 35.0%
! TAGTTAGTATGGATTGTTCC+TGG - chr3_3:27779100-27779119 Msa0448230:intron 35.0%
AGATATGTCAAGGAAAAACC+GGG - chr3_3:27779138-27779157 Msa0448230:intron 35.0%
!! GTAATCTTTGGAATTGTTCC+CGG + chr3_3:27779159-27779178 None:intergenic 35.0%
!!! GTTGATGTTTTGTTTTGGTG+AGG - chr3_3:27779196-27779215 Msa0448230:intron 35.0%
! CATATTTCATGCCACTTGAA+AGG + chr3_3:27780154-27780173 None:intergenic 35.0%
AAAAAACACTTGACGCATTC+AGG + chr3_3:27780285-27780304 None:intergenic 35.0%
TATCTCAAGGAAATCAAGAC+AGG + chr3_3:27780330-27780349 None:intergenic 35.0%
TGTTGTACTTTCGTATCTCA+AGG + chr3_3:27780343-27780362 None:intergenic 35.0%
ACTCACAAAACAAACCCTAA+TGG - chr3_3:27780404-27780423 Msa0448230:intron 35.0%
AACAAACCCTAATGGTGTAT+AGG - chr3_3:27780412-27780431 Msa0448230:intron 35.0%
AGCAATCCTATACACCATTA+GGG + chr3_3:27780421-27780440 None:intergenic 35.0%
AAGCAATCCTATACACCATT+AGG + chr3_3:27780422-27780441 None:intergenic 35.0%
CTTACTAATCTGAGTAGAGT+CGG + chr3_3:27780613-27780632 None:intergenic 35.0%
TGTACAAGCATATTTCAACC+GGG - chr3_3:27780685-27780704 Msa0448230:intron 35.0%
CAGTACTATCATTCCAAACT+GGG - chr3_3:27780769-27780788 Msa0448230:intron 35.0%
AGTACTATCATTCCAAACTG+GGG - chr3_3:27780770-27780789 Msa0448230:intron 35.0%
AAAAGGGGAATGATTGTTGT+TGG + chr3_3:27780803-27780822 None:intergenic 35.0%
ACACCCTTAATCCACTATTT+AGG + chr3_3:27780835-27780854 None:intergenic 35.0%
!! TAAATAGTGGATTAAGGGTG+TGG - chr3_3:27780834-27780853 Msa0448230:intron 35.0%
!! AAATAGTGGATTAAGGGTGT+GGG - chr3_3:27780835-27780854 Msa0448230:intron 35.0%
GGACATTGCATAATATATGC+AGG - chr3_3:27781084-27781103 Msa0448230:intron 35.0%
TGATACAGTGGTGATATAGA+TGG - chr3_3:27781248-27781267 Msa0448230:intron 35.0%
! GGGAAGCTTCATCTTTTTAA+GGG + chr3_3:27781303-27781322 None:intergenic 35.0%
! TGGGAAGCTTCATCTTTTTA+AGG + chr3_3:27781304-27781323 None:intergenic 35.0%
! TTGGTATCCTTGGTTCTTTA+AGG - chr3_3:27781334-27781353 Msa0448230:intron 35.0%
! TGGTATCCTTGGTTCTTTAA+GGG - chr3_3:27781335-27781354 Msa0448230:intron 35.0%
TTGTCGATGATTAATCTCGT+CGG - chr3_3:27781805-27781824 Msa0448230:CDS 35.0%
TCTCATTATGTCTCTCTTGG+TGG - chr3_3:27773891-27773910 Msa0448230:CDS 40.0%
! CTCTACTTTGTTTGCTTGCA+TGG + chr3_3:27773924-27773943 None:intergenic 40.0%
GCAATGGTTCATTCTCAAGA+TGG - chr3_3:27774033-27774052 Msa0448230:intron 40.0%
ACAAGATTGAGAAGCTACCA+GGG - chr3_3:27774070-27774089 Msa0448230:intron 40.0%
AATTTCACATTTGGTTGCCC+TGG + chr3_3:27774090-27774109 None:intergenic 40.0%
! ATATGGAGGGTATGTTACAG+TGG - chr3_3:27774116-27774135 Msa0448230:intron 40.0%
GTTACAGTGGACAAAATAGC+TGG - chr3_3:27774129-27774148 Msa0448230:intron 40.0%
GTTGCTTAACATGTACCCTA+AGG + chr3_3:27774720-27774739 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr3_3:27774859-27774878 None:intergenic 40.0%
!! TCGTTTTCTCAAGTTGTTCC+TGG + chr3_3:27775146-27775165 None:intergenic 40.0%
ATTGTGTGACTACTCATTCC+TGG - chr3_3:27776026-27776045 Msa0448230:CDS 40.0%
TTCTTTGACACACCTTATGC+TGG - chr3_3:27776091-27776110 Msa0448230:intron 40.0%
TCTTTGACACACCTTATGCT+GGG - chr3_3:27776092-27776111 Msa0448230:intron 40.0%
TAGTGTAGTCTTCGAAAGAG+TGG - chr3_3:27776347-27776366 Msa0448230:intron 40.0%
GAAAGAGTGGTTCAGTTGTA+TGG - chr3_3:27776360-27776379 Msa0448230:intron 40.0%
TGGTTCAGTTGTATGGGTTT+GGG - chr3_3:27776367-27776386 Msa0448230:intron 40.0%
CCCTTACACTAGATAATCGA+AGG + chr3_3:27776563-27776582 None:intergenic 40.0%
AATATGATAGCAGTGACCTG+AGG - chr3_3:27776798-27776817 Msa0448230:intron 40.0%
TTATTCCTCCCAATTTCCTC+AGG + chr3_3:27776817-27776836 None:intergenic 40.0%
AAGCACAGCAATGTGAAGAA+TGG - chr3_3:27777037-27777056 Msa0448230:intron 40.0%
! CCTCAAGAAGCGTGAATTAT+GGG + chr3_3:27777076-27777095 None:intergenic 40.0%
! TCCTCAAGAAGCGTGAATTA+TGG + chr3_3:27777077-27777096 None:intergenic 40.0%
CATTTCTCTTTCAAAGGTCC+TGG - chr3_3:27777676-27777695 Msa0448230:CDS 40.0%
AACTTCTTGCATTGCTCCAT+AGG + chr3_3:27777716-27777735 None:intergenic 40.0%
TATGGAGCAATGCAAGAAGT+TGG - chr3_3:27777715-27777734 Msa0448230:CDS 40.0%
TTTCCAAATTTATCTGGGCC+AGG - chr3_3:27778859-27778878 Msa0448230:intron 40.0%
AATCCTGGCCCAGATAAATT+TGG + chr3_3:27778865-27778884 None:intergenic 40.0%
AAATTTATCTGGGCCAGGAT+TGG - chr3_3:27778864-27778883 Msa0448230:intron 40.0%
CTTGGTTTCATCCATATGAG+TGG + chr3_3:27778894-27778913 None:intergenic 40.0%
GCCAATGATATCACAGACAA+AGG + chr3_3:27778987-27779006 None:intergenic 40.0%
ATGGTCTCTATATGGTCCAT+AGG - chr3_3:27779069-27779088 Msa0448230:intron 40.0%
TCTCTATATGGTCCATAGGT+GGG - chr3_3:27779073-27779092 Msa0448230:intron 40.0%
!! TGGGCTCAAAAAGTGTGTTT+TGG - chr3_3:27779278-27779297 Msa0448230:intron 40.0%
AATGATGACACAGATGAGCA+AGG - chr3_3:27779896-27779915 Msa0448230:intron 40.0%
ACTGCACTCAGTAGTTTGAT+TGG + chr3_3:27780008-27780027 None:intergenic 40.0%
AATCTTACCGAGACCTTCTT+GGG + chr3_3:27780124-27780143 None:intergenic 40.0%
!! TAGAAATTAGGGTTGGTCCA+AGG - chr3_3:27780184-27780203 Msa0448230:intron 40.0%
!! AGAAATTAGGGTTGGTCCAA+GGG - chr3_3:27780185-27780204 Msa0448230:intron 40.0%
TGTACATAATCGTCACTGCA+TGG + chr3_3:27780671-27780690 None:intergenic 40.0%
GTACAAGCATATTTCAACCG+GGG - chr3_3:27780686-27780705 Msa0448230:intron 40.0%
ATAATCGAGCTTCGTGACAT+TGG + chr3_3:27780735-27780754 None:intergenic 40.0%
TCACGAAGCTCGATTATGAT+TGG - chr3_3:27780738-27780757 Msa0448230:intron 40.0%
CACGAAGCTCGATTATGATT+GGG - chr3_3:27780739-27780758 Msa0448230:intron 40.0%
! GTTTGGAATGATAGTACTGC+AGG + chr3_3:27780768-27780787 None:intergenic 40.0%
GCAGTACTATCATTCCAAAC+TGG - chr3_3:27780768-27780787 Msa0448230:intron 40.0%
GTACTATCATTCCAAACTGG+GGG - chr3_3:27780771-27780790 Msa0448230:intron 40.0%
TACTATCATTCCAAACTGGG+GGG - chr3_3:27780772-27780791 Msa0448230:intron 40.0%
!! GATTAAGGGTGTGGGTTTTT+AGG - chr3_3:27780843-27780862 Msa0448230:intron 40.0%
TACCATTTGAGCTAAGCTCA+GGG + chr3_3:27781063-27781082 None:intergenic 40.0%
TGAGCTTAGCTCAAATGGTA+GGG - chr3_3:27781063-27781082 Msa0448230:intron 40.0%
CATAATATATGCAGGGACCA+GGG - chr3_3:27781092-27781111 Msa0448230:intron 40.0%
ACAGTGGTGATATAGATGGA+AGG - chr3_3:27781252-27781271 Msa0448230:intron 40.0%
CAGTGGTGATATAGATGGAA+GGG - chr3_3:27781253-27781272 Msa0448230:intron 40.0%
GGATACCAAGTTGTCTCAAT+GGG + chr3_3:27781323-27781342 None:intergenic 40.0%
AGGATACCAAGTTGTCTCAA+TGG + chr3_3:27781324-27781343 None:intergenic 40.0%
TTGAGACAACTTGGTATCCT+TGG - chr3_3:27781324-27781343 Msa0448230:intron 40.0%
GTCACTAGACATAGTGATGA+AGG - chr3_3:27781608-27781627 Msa0448230:intron 40.0%
AGCTCGAACCTGAAACTTTA+AGG - chr3_3:27781874-27781893 Msa0448230:CDS 40.0%
GCTCGAACCTGAAACTTTAA+GGG - chr3_3:27781875-27781894 Msa0448230:CDS 40.0%
TATACTTGTCCGAGTGAATC+TGG + chr3_3:27781909-27781928 None:intergenic 40.0%
TTTCATGTGAAACAGGTTGC+TGG - chr3_3:27781975-27781994 Msa0448230:CDS 40.0%
TGGCTATGCTGAAGTATACA+AGG - chr3_3:27781995-27782014 Msa0448230:CDS 40.0%
GGCTATGCTGAAGTATACAA+GGG - chr3_3:27781996-27782015 Msa0448230:CDS 40.0%
TATGCTGAAGTATACAAGGG+AGG - chr3_3:27781999-27782018 Msa0448230:CDS 40.0%
GACAAGATTGAGAAGCTACC+AGG - chr3_3:27774069-27774088 Msa0448230:intron 45.0%
CCATTGAGCCAAAGAAGAAG+AGG + chr3_3:27774207-27774226 None:intergenic 45.0%
! CCTCTTCTTCTTTGGCTCAA+TGG - chr3_3:27774204-27774223 Msa0448230:intron 45.0%
! CTTCTTCTTTGGCTCAATGG+AGG - chr3_3:27774207-27774226 Msa0448230:intron 45.0%
AGACAACCACTAGAAGATGG+AGG + chr3_3:27775545-27775564 None:intergenic 45.0%
TTGACTACCTTCCCAGCATA+AGG + chr3_3:27776106-27776125 None:intergenic 45.0%
GTGGTTCAGTTGTATGGGTT+TGG - chr3_3:27776366-27776385 Msa0448230:intron 45.0%
GGTTCAGTTGTATGGGTTTG+GGG - chr3_3:27776368-27776387 Msa0448230:intron 45.0%
TAGCAGTGACCTGAGGAAAT+TGG - chr3_3:27776805-27776824 Msa0448230:intron 45.0%
AGCAGTGACCTGAGGAAATT+GGG - chr3_3:27776806-27776825 Msa0448230:intron 45.0%
GTGCTTCTCTCATAACCTTG+TGG + chr3_3:27777023-27777042 None:intergenic 45.0%
ACAGCAATGTGAAGAATGGC+AGG - chr3_3:27777041-27777060 Msa0448230:intron 45.0%
CCCATAATTCACGCTTCTTG+AGG - chr3_3:27777073-27777092 Msa0448230:intron 45.0%
TTGTATACAACATGCACGCC+GGG + chr3_3:27777103-27777122 None:intergenic 45.0%
CTTGTATACAACATGCACGC+CGG + chr3_3:27777104-27777123 None:intergenic 45.0%
TACACATGACTTGAGGGTTG+AGG + chr3_3:27777312-27777331 None:intergenic 45.0%
CCATTACTCTTCACACGGAA+GGG + chr3_3:27777742-27777761 None:intergenic 45.0%
CCTTCCGTGTGAAGAGTAAT+GGG - chr3_3:27777740-27777759 Msa0448230:CDS 45.0%
ATGAATATCCTACCCCAGCT+GGG + chr3_3:27778081-27778100 None:intergenic 45.0%
TATGAATATCCTACCCCAGC+TGG + chr3_3:27778082-27778101 None:intergenic 45.0%
AGCTGTTCTTCTATCCCCAT+TGG + chr3_3:27778131-27778150 None:intergenic 45.0%
GGTTTCATCCATATGAGTGG+TGG + chr3_3:27778891-27778910 None:intergenic 45.0%
GTCTCTATATGGTCCATAGG+TGG - chr3_3:27779072-27779091 Msa0448230:intron 45.0%
ACTAACTATGGTCCCACCTA+TGG + chr3_3:27779088-27779107 None:intergenic 45.0%
AGGTGGGACCATAGTTAGTA+TGG - chr3_3:27779089-27779108 Msa0448230:intron 45.0%
AGGTTGTGATTAGTGCAGAC+TGG + chr3_3:27780091-27780110 None:intergenic 45.0%
GAATCTTACCGAGACCTTCT+TGG + chr3_3:27780125-27780144 None:intergenic 45.0%
ACCATTTGAGCTAAGCTCAG+GGG + chr3_3:27781062-27781081 None:intergenic 45.0%
CTACCATTTGAGCTAAGCTC+AGG + chr3_3:27781064-27781083 None:intergenic 45.0%
CTGAGCTTAGCTCAAATGGT+AGG - chr3_3:27781062-27781081 Msa0448230:intron 45.0%
GCATAATATATGCAGGGACC+AGG - chr3_3:27781091-27781110 Msa0448230:intron 45.0%
AGCTTCCCATTGAGACAACT+TGG - chr3_3:27781315-27781334 Msa0448230:intron 45.0%
! TCCTTGGTTCTTTAAGGGAG+AGG - chr3_3:27781340-27781359 Msa0448230:intron 45.0%
ACCTCTCCCTTAAAGAACCA+AGG + chr3_3:27781344-27781363 None:intergenic 45.0%
!! AGTTTCAGGTTCGAGCTCTA+TGG + chr3_3:27781871-27781890 None:intergenic 45.0%
CTCGGATCCCTTAAAGTTTC+AGG + chr3_3:27781885-27781904 None:intergenic 45.0%
!! GCTCTTGCTGGTTGATAACT+TGG + chr3_3:27782065-27782084 None:intergenic 45.0%
!!! AATATAATTTTGTATATTAT+TGG + chr3_3:27775808-27775827 None:intergenic 5.0%
!!! TTTTTTTTCTTATTTAATTT+TGG - chr3_3:27777966-27777985 Msa0448230:intron 5.0%
!!! ATAACTTATTATTTTTTAAT+TGG - chr3_3:27778929-27778948 Msa0448230:intron 5.0%
!!! TAACTTATTATTTTTTAATT+GGG - chr3_3:27778930-27778949 Msa0448230:intron 5.0%
!! TTTATATAATATAATACTTA+TGG + chr3_3:27781435-27781454 None:intergenic 5.0%
! TGGTTTTCACATCACGAGCC+AGG - chr3_3:27775125-27775144 Msa0448230:CDS 50.0%
TGACACACCTTATGCTGGGA+AGG - chr3_3:27776096-27776115 Msa0448230:intron 50.0%
AGTGACCTGAGGAAATTGGG+AGG - chr3_3:27776809-27776828 Msa0448230:intron 50.0%
CACGCTTCTTGAGGATTTCC+CGG - chr3_3:27777082-27777101 Msa0448230:intron 50.0%
TAGGCAAGAGATGAGCATCC+AGG + chr3_3:27777697-27777716 None:intergenic 50.0%
GGATGCTCATCTCTTGCCTA+TGG - chr3_3:27777697-27777716 Msa0448230:CDS 50.0%
CCCTTCCGTGTGAAGAGTAA+TGG - chr3_3:27777739-27777758 Msa0448230:CDS 50.0%
CCCATTACTCTTCACACGGA+AGG + chr3_3:27777743-27777762 None:intergenic 50.0%
TGAATATCCTACCCCAGCTG+GGG + chr3_3:27778080-27778099 None:intergenic 50.0%
ATTGCTGGGGAGAGTTATGC+TGG - chr3_3:27778220-27778239 Msa0448230:CDS 50.0%
! TCGTCTAAGACCATCTCCGA+TGG - chr3_3:27778594-27778613 Msa0448230:intron 50.0%
!! TATGAGTGGTGGACCAATCC+TGG + chr3_3:27778880-27778899 None:intergenic 50.0%
!! GGATTGGTCCACCACTCATA+TGG - chr3_3:27778880-27778899 Msa0448230:intron 50.0%
TAACCGTCCCAAGAAGGTCT+CGG - chr3_3:27780114-27780133 Msa0448230:intron 50.0%
TTACCGAGACCTTCTTGGGA+CGG + chr3_3:27780120-27780139 None:intergenic 50.0%
TTTCAACCGGGGTGATGTTC+AGG - chr3_3:27780697-27780716 Msa0448230:intron 50.0%
CTTCGTGACATTGGCATGGA+GGG + chr3_3:27780726-27780745 None:intergenic 50.0%
TCCCCTGAGCTTAGCTCAAA+TGG - chr3_3:27781058-27781077 Msa0448230:intron 50.0%
GATCCGAGTCCAGATTCACT+CGG - chr3_3:27781897-27781916 Msa0448230:CDS 50.0%
TGTCCGAGTGAATCTGGACT+CGG + chr3_3:27781903-27781922 None:intergenic 50.0%
TTTGCCACAGTGAGAGAAGC+AGG - chr3_3:27782029-27782048 Msa0448230:CDS 50.0%
ATGTCCTGCTTCTCTCACTG+TGG + chr3_3:27782036-27782055 None:intergenic 50.0%
ATTAGAGAGAGGGCTCTTGC+TGG + chr3_3:27782077-27782096 None:intergenic 50.0%
TTGTTCCTTGAGTCCCCAGC+TGG - chr3_3:27778064-27778083 Msa0448230:intron 55.0%
TGTTCCTTGAGTCCCCAGCT+GGG - chr3_3:27778065-27778084 Msa0448230:intron 55.0%
CCTTCTTGGGACGGTTAGTG+AGG + chr3_3:27780111-27780130 None:intergenic 55.0%
CCTCACTAACCGTCCCAAGA+AGG - chr3_3:27780108-27780127 Msa0448230:intron 55.0%
GCTTCGTGACATTGGCATGG+AGG + chr3_3:27780727-27780746 None:intergenic 55.0%
CGAGCTTCGTGACATTGGCA+TGG + chr3_3:27780730-27780749 None:intergenic 55.0%
GTTGGACTATCCCCCCAGTT+TGG + chr3_3:27780785-27780804 None:intergenic 55.0%
GGTGATCGAGGTTTGAACCC+TGG + chr3_3:27781112-27781131 None:intergenic 55.0%
GTGAAGAAGTGGGGTGATCG+AGG + chr3_3:27781124-27781143 None:intergenic 55.0%
GTTCCTTGAGTCCCCAGCTG+GGG - chr3_3:27778066-27778085 Msa0448230:intron 60.0%
GTCCAAGGGTCGAGCTAGTG+AGG - chr3_3:27780199-27780218 Msa0448230:intron 60.0%
CAACCGGGGTGATGTTCAGG+AGG - chr3_3:27780700-27780719 Msa0448230:intron 60.0%
CTACCCCAGCTGGGGACTCA+AGG + chr3_3:27778072-27778091 None:intergenic 65.0%
CTTGAGTCCCCAGCTGGGGT+AGG - chr3_3:27778070-27778089 Msa0448230:intron 65.0%
GGCCTCACTAGCTCGACCCT+TGG + chr3_3:27780204-27780223 None:intergenic 65.0%
GGGCCTCCTGAACATCACCC+CGG + chr3_3:27780706-27780725 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 27773823 27782151 27773823 ID=Msa0448230;Name=Msa0448230
chr3_3 mRNA 27773823 27782151 27773823 ID=Msa0448230-mRNA-1;Parent=Msa0448230;Name=Msa0448230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=30|0.16|0.14|1|1|1|7|0|497
chr3_3 exon 27773823 27773984 27773823 ID=Msa0448230-mRNA-1:exon:5410;Parent=Msa0448230-mRNA-1
chr3_3 exon 27774613 27774718 27774613 ID=Msa0448230-mRNA-1:exon:5409;Parent=Msa0448230-mRNA-1
chr3_3 exon 27775110 27775318 27775110 ID=Msa0448230-mRNA-1:exon:5408;Parent=Msa0448230-mRNA-1
chr3_3 exon 27775839 27776096 27775839 ID=Msa0448230-mRNA-1:exon:5407;Parent=Msa0448230-mRNA-1
chr3_3 exon 27777647 27777921 27777647 ID=Msa0448230-mRNA-1:exon:5406;Parent=Msa0448230-mRNA-1
chr3_3 exon 27778175 27778282 27778175 ID=Msa0448230-mRNA-1:exon:5405;Parent=Msa0448230-mRNA-1
chr3_3 exon 27781746 27782151 27781746 ID=Msa0448230-mRNA-1:exon:5404;Parent=Msa0448230-mRNA-1
chr3_3 five_prime_UTR 27782122 27782151 27782122 ID=Msa0448230-mRNA-1:five_prime_utr;Parent=Msa0448230-mRNA-1
chr3_3 CDS 27781746 27782121 27781746 ID=Msa0448230-mRNA-1:cds;Parent=Msa0448230-mRNA-1
chr3_3 CDS 27778175 27778282 27778175 ID=Msa0448230-mRNA-1:cds;Parent=Msa0448230-mRNA-1
chr3_3 CDS 27777647 27777921 27777647 ID=Msa0448230-mRNA-1:cds;Parent=Msa0448230-mRNA-1
chr3_3 CDS 27775839 27776096 27775839 ID=Msa0448230-mRNA-1:cds;Parent=Msa0448230-mRNA-1
chr3_3 CDS 27775110 27775318 27775110 ID=Msa0448230-mRNA-1:cds;Parent=Msa0448230-mRNA-1
chr3_3 CDS 27774613 27774718 27774613 ID=Msa0448230-mRNA-1:cds;Parent=Msa0448230-mRNA-1
chr3_3 CDS 27773823 27773984 27773823 ID=Msa0448230-mRNA-1:cds;Parent=Msa0448230-mRNA-1
Gene Sequence

>Msa0448230

ATGAGCAAACCAAATTCTTCATTGGTTCATCTATCCTTTCTCATTATGTCTCTCTTGGTGGCTGAAATCCATGCAAGCAAACAAAGTAGAGCTCTTACCAAACTACAAAAGTCCAAGTACAATATAAATTCAAAAATTGATATAAGTCACTTTAAGATACATGAGAATATTGTGCTTGATGCAATGGTTCATTCTCAAGATGGTATGAAAGAGAAAGACAAGATTGAGAAGCTACCAGGGCAACCAAATGTGAAATTTTCTCAATATGGAGGGTATGTTACAGTGGACAAAATAGCTGGACGTGCTTTTTACTATTACTTTGTGGAAGCTCATCATTCTAAAGAAACATTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGCTCATCTCTTGCCTATGGAGCAATGCAAGAAGTTGGACCCTTCCGTGTGAAGAGTAATGGGAAAACCCTTCACAAAAATAACTATTCATGGAACTATGCTGCAAATTTGTTGTTCCTTGAGTCCCCAGCTGGGGTAGGATATTCATACTCAAATAGATCATCTGATTATGACACCAATGGGGATAGAAGAACAGCTGCAGATAACTATGTTTTTTTAGTGAACTGGTTAGAGAGATTTCCTGAATATAAGAATAGAGATTTCTACATTGCTGGGGAGAGTTATGCTGGTCATTATGTTCCTCAACTTGCACACAATATTCTCTACCACAATAAAAAGGCTAATAGGACAATTATCAACCTCAAAGGAATTATGATTGGGAATGCAGTGATCAATGATGACACAGATGAGCAAGGAATGTACGATTTTCTTGCAAGTCATGCAATCATATCAGACCAAACAGCATATAATATCAACAAATTTTGTAATTTCTCATCAACTTCCAATCAAACTACTGAGTGCAGTGAAGCAGCAAGTGAAGTTGATAAGAACACGTTGTTCCTTGATATATACAACATCTATGCTCCAGTCTGCACTAATCACAACCTCACTAACCGTCCCAAGAAGGTCTCGGATGTTCTTGATCCATGCAGTGACGATTATGTACAAGCATATTTCAACCGGGGTGATGTTCAGGAGGCCCTCCATGCCAATGTCACGAAGCTCGATTATGATTGGGAAGCCTGCAGTACTATCATTCCAAACTGGGGGGATAGTCCAACAACAATCATTCCCCTTTTACATGATCTCCTAAATAGTGGATTAAGGGTGTGGGTTTTTAGTGGTGATATAGATGGAAGGGTGCCTGTTACTGCAACAAAATATTCCCTTAAAAAGATGAAGCTTCCCATTGAGACAACTTGGTATCCTTGGTTCTTTAAGGGAGAGGTTGCTGGCTATGCTGAAGTATACAAGGGAGGTCTAACTTTTGCCACAGTGAGAGAAGCAGGACATCAAGTGCCAAGTTATCAACCAGCAAGAGCCCTCTCTCTAATTATGCATTTCTTAAATGGCACTCCTCTTCCTATTACTCAAAGATTATATGACTAA
Protein sequence

>Msa0448230

MSKPNSSLVHLSFLIMSLLVAEIHASKQSRALTKLQKSKYNINSKIDISHFKIHENIVLDAMVHSQDGMKEKDKIEKLPGQPNVKFSQYGGYVTVDKIAGRAFYYYFVEAHHSKETLPLLLWLNGGPGCSSLAYGAMQEVGPFRVKSNGKTLHKNNYSWNYAANLLFLESPAGVGYSYSNRSSDYDTNGDRRTAADNYVFLVNWLERFPEYKNRDFYIAGESYAGHYVPQLAHNILYHNKKANRTIINLKGIMIGNAVINDDTDEQGMYDFLASHAIISDQTAYNINKFCNFSSTSNQTTECSEAASEVDKNTLFLDIYNIYAPVCTNHNLTNRPKKVSDVLDPCSDDYVQAYFNRGDVQEALHANVTKLDYDWEACSTIIPNWGDSPTTIIPLLHDLLNSGLRVWVFSGDIDGRVPVTATKYSLKKMKLPIETTWYPWFFKGEVAGYAEVYKGGLTFATVREAGHQVPSYQPARALSLIMHFLNGTPLPITQRLYD*