Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136060 | AAP03088.1 | 56.563 | 320 | 119 | 7 | 6 | 322 | 4 | 306 | 1.15e-119 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136060 | sp|P06215|CHIT_PHAVU | 54.375 | 320 | 126 | 7 | 8 | 324 | 9 | 311 | 5.31e-116 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136060 | Q7X9F5 | 56.563 | 320 | 119 | 7 | 6 | 322 | 4 | 306 | 5.47e-120 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012820 | Msa1136060 | 0.806155 | 9.435796e-50 | -8.615850e-47 |
| Msa0028280 | Msa1136060 | -0.809833 | 1.556132e-50 | -8.615850e-47 |
| Msa0036230 | Msa1136060 | 0.844749 | 6.234907e-59 | -8.615850e-47 |
| Msa0036580 | Msa1136060 | 0.833647 | 4.729756e-56 | -8.615850e-47 |
| Msa0048950 | Msa1136060 | 0.823974 | 1.037540e-53 | -8.615850e-47 |
| Msa0059880 | Msa1136060 | 0.807780 | 4.277241e-50 | -8.615850e-47 |
| Msa0061600 | Msa1136060 | 0.828742 | 7.591259e-55 | -8.615850e-47 |
| Msa0072030 | Msa1136060 | 0.800655 | 1.301730e-48 | -8.615850e-47 |
| Msa0084160 | Msa1136060 | 0.813230 | 2.844083e-51 | -8.615850e-47 |
| Msa0093530 | Msa1136060 | 0.803773 | 2.970388e-49 | -8.615850e-47 |
| Msa0096860 | Msa1136060 | 0.805349 | 1.393728e-49 | -8.615850e-47 |
| Msa0106130 | Msa1136060 | 0.828909 | 6.916360e-55 | -8.615850e-47 |
| Msa0605480 | Msa1136060 | 0.811344 | 7.336029e-51 | -8.615850e-47 |
| Msa0611950 | Msa1136060 | 0.806781 | 6.964235e-50 | -8.615850e-47 |
| Msa0623750 | Msa1136060 | 0.808260 | 3.379968e-50 | -8.615850e-47 |
| Msa0629720 | Msa1136060 | 0.806231 | 9.097188e-50 | -8.615850e-47 |
| Msa0640290 | Msa1136060 | 0.807632 | 4.597642e-50 | -8.615850e-47 |
| Msa0645120 | Msa1136060 | 0.818353 | 2.049112e-52 | -8.615850e-47 |
| Msa0646440 | Msa1136060 | 0.801270 | 9.747006e-49 | -8.615850e-47 |
| Msa0667600 | Msa1136060 | 0.813535 | 2.437237e-51 | -8.615850e-47 |
| Msa0668210 | Msa1136060 | 0.806061 | 9.875981e-50 | -8.615850e-47 |
| Msa0678620 | Msa1136060 | 0.813145 | 2.968571e-51 | -8.615850e-47 |
| Msa0684590 | Msa1136060 | 0.801049 | 1.081766e-48 | -8.615850e-47 |
| Msa0684600 | Msa1136060 | 0.805209 | 1.490796e-49 | -8.615850e-47 |
| Msa0684720 | Msa1136060 | 0.839897 | 1.203690e-57 | -8.615850e-47 |
| Msa0716600 | Msa1136060 | 0.823320 | 1.475912e-53 | -8.615850e-47 |
| Msa0727480 | Msa1136060 | 0.802479 | 5.501933e-49 | -8.615850e-47 |
| Msa0735280 | Msa1136060 | 0.827449 | 1.554952e-54 | -8.615850e-47 |
| Msa0757990 | Msa1136060 | 0.809449 | 1.881805e-50 | -8.615850e-47 |
| Msa0758000 | Msa1136060 | 0.809999 | 1.433695e-50 | -8.615850e-47 |
| Msa0758150 | Msa1136060 | 0.861153 | 1.252966e-63 | -8.615850e-47 |
| Msa0777250 | Msa1136060 | 0.818052 | 2.396432e-52 | -8.615850e-47 |
| Msa0782030 | Msa1136060 | -0.802154 | 6.418401e-49 | -8.615850e-47 |
| Msa0814230 | Msa1136060 | 0.821396 | 4.127864e-53 | -8.615850e-47 |
| Msa0817100 | Msa1136060 | 0.864037 | 1.622346e-64 | -8.615850e-47 |
| Msa0126960 | Msa1136060 | 0.804394 | 2.205864e-49 | -8.615850e-47 |
| Msa0135890 | Msa1136060 | 0.801269 | 9.749625e-49 | -8.615850e-47 |
| Msa0139270 | Msa1136060 | 0.828220 | 1.014834e-54 | -8.615850e-47 |
| Msa0150910 | Msa1136060 | 0.807125 | 5.887597e-50 | -8.615850e-47 |
| Msa0176620 | Msa1136060 | 0.842426 | 2.605628e-58 | -8.615850e-47 |
| Msa0197750 | Msa1136060 | 0.834525 | 2.850749e-56 | -8.615850e-47 |
| Msa0218060 | Msa1136060 | 0.823916 | 1.070439e-53 | -8.615850e-47 |
| Msa0225910 | Msa1136060 | 0.818608 | 1.793852e-52 | -8.615850e-47 |
| Msa0404180 | Msa1136060 | -0.806713 | 7.197120e-50 | -8.615850e-47 |
| Msa0469550 | Msa1136060 | 0.800511 | 1.392462e-48 | -8.615850e-47 |
| Msa0472390 | Msa1136060 | 0.806447 | 8.188211e-50 | -8.615850e-47 |
| Msa0985250 | Msa1136060 | 0.831789 | 1.367729e-55 | -8.615850e-47 |
| Msa0985290 | Msa1136060 | 0.835770 | 1.382527e-56 | -8.615850e-47 |
| Msa0985700 | Msa1136060 | 0.814793 | 1.285470e-51 | -8.615850e-47 |
| Msa1006940 | Msa1136060 | 0.848970 | 4.363373e-60 | -8.615850e-47 |
| Msa1007930 | Msa1136060 | 0.819756 | 9.824048e-53 | -8.615850e-47 |
| Msa1021620 | Msa1136060 | 0.805774 | 1.135056e-49 | -8.615850e-47 |
| Msa1036020 | Msa1136060 | 0.823622 | 1.254470e-53 | -8.615850e-47 |
| Msa1040730 | Msa1136060 | 0.838639 | 2.551731e-57 | -8.615850e-47 |
| Msa1076830 | Msa1136060 | 0.806011 | 1.011596e-49 | -8.615850e-47 |
| Msa1083100 | Msa1136060 | 0.831777 | 1.377105e-55 | -8.615850e-47 |
| Msa1085560 | Msa1136060 | 0.820111 | 8.151277e-53 | -8.615850e-47 |
| Msa1100560 | Msa1136060 | 0.973314 | 3.213852e-136 | -8.615850e-47 |
| Msa0247050 | Msa1136060 | 0.824911 | 6.244693e-54 | -8.615850e-47 |
| Msa0256430 | Msa1136060 | -0.801076 | 1.068095e-48 | -8.615850e-47 |
| Msa0266640 | Msa1136060 | 0.843170 | 1.652135e-58 | -8.615850e-47 |
| Msa0266650 | Msa1136060 | 0.804862 | 1.762300e-49 | -8.615850e-47 |
| Msa0277280 | Msa1136060 | 0.814759 | 1.308158e-51 | -8.615850e-47 |
| Msa0278940 | Msa1136060 | 0.805325 | 1.409840e-49 | -8.615850e-47 |
| Msa0298270 | Msa1136060 | 0.804180 | 2.444400e-49 | -8.615850e-47 |
| Msa0302220 | Msa1136060 | 0.807280 | 5.460102e-50 | -8.615850e-47 |
| Msa0318370 | Msa1136060 | 0.812221 | 4.728396e-51 | -8.615850e-47 |
| Msa0356200 | Msa1136060 | 0.814495 | 1.496861e-51 | -8.615850e-47 |
| Msa0356250 | Msa1136060 | 0.811593 | 6.479274e-51 | -8.615850e-47 |
| Msa0356320 | Msa1136060 | 0.802630 | 5.120657e-49 | -8.615850e-47 |
| Msa0356380 | Msa1136060 | 0.807676 | 4.499620e-50 | -8.615850e-47 |
| Msa0356410 | Msa1136060 | 0.812322 | 4.494744e-51 | -8.615850e-47 |
| Msa1112730 | Msa1136060 | 0.824117 | 9.604373e-54 | -8.615850e-47 |
| Msa1124440 | Msa1136060 | -0.807514 | 4.869388e-50 | -8.615850e-47 |
| Msa1136050 | Msa1136060 | 0.879849 | 8.900689e-70 | -8.615850e-47 |
| Msa1136060 | Msa1165860 | 0.806236 | 9.075088e-50 | -8.615850e-47 |
| Msa1136060 | Msa1179190 | 0.860116 | 2.585099e-63 | -8.615850e-47 |
| Msa1136060 | Msa1216600 | 0.800680 | 1.286740e-48 | -8.615850e-47 |
| Msa1136060 | Msa1219780 | 0.842228 | 2.939274e-58 | -8.615850e-47 |
| Msa1136060 | Msa1220720 | 0.824512 | 7.753196e-54 | -8.615850e-47 |
| Msa1136060 | Msa1221170 | 0.803738 | 3.021261e-49 | -8.615850e-47 |
| Msa1136060 | Msa1222030 | 0.833143 | 6.316424e-56 | -8.615850e-47 |
| Msa1136060 | Msa1233620 | 0.845835 | 3.169178e-59 | -8.615850e-47 |
| Msa1136060 | Msa1255710 | 0.810184 | 1.307422e-50 | -8.615850e-47 |
| Msa1136060 | Msa1258100 | -0.802298 | 5.993909e-49 | -8.615850e-47 |
| Msa1136060 | Msa1265500 | 0.808736 | 2.674359e-50 | -8.615850e-47 |
| Msa1136060 | Msa1265570 | 0.817025 | 4.084803e-52 | -8.615850e-47 |
| Msa1136060 | Msa1266710 | 0.833956 | 3.957774e-56 | -8.615850e-47 |
| Msa1136060 | Msa1269050 | 0.833082 | 6.542025e-56 | -8.615850e-47 |
| Msa1136060 | Msa1275840 | 0.861533 | 9.598042e-64 | -8.615850e-47 |
| Msa1136060 | Msa1314020 | 0.858581 | 7.466423e-63 | -8.615850e-47 |
| Msa1136060 | Msa1314050 | 0.816823 | 4.534739e-52 | -8.615850e-47 |
| Msa1136060 | Msa1314710 | 0.810374 | 1.189776e-50 | -8.615850e-47 |
| Msa1136060 | Msa1323030 | 0.817284 | 3.571260e-52 | -8.615850e-47 |
| Msa1136060 | Msa1323160 | 0.805863 | 1.086967e-49 | -8.615850e-47 |
| Msa1136060 | Msa1334670 | 0.818920 | 1.524050e-52 | -8.615850e-47 |
| Msa1136060 | Msa1336100 | 0.817273 | 3.591576e-52 | -8.615850e-47 |
| Msa1136060 | Msa1339490 | 0.802251 | 6.129471e-49 | -8.615850e-47 |
| Msa1136060 | Msa1350490 | 0.963121 | 1.066657e-121 | -8.615850e-47 |
| Msa1136060 | Msa1357490 | 0.801829 | 7.486026e-49 | -8.615850e-47 |
| Msa1136060 | Msa1360380 | -0.803187 | 3.928401e-49 | -8.615850e-47 |
| Msa1136060 | Msa1362590 | 0.813986 | 1.938241e-51 | -8.615850e-47 |
| Msa1136060 | Msa1363690 | 0.833380 | 5.514362e-56 | -8.615850e-47 |
| Msa1136060 | Msa1365230 | 0.822930 | 1.819986e-53 | -8.615850e-47 |
| Msa1136060 | Msa1370930 | 0.867276 | 1.541399e-65 | -8.615850e-47 |
| Msa1136060 | Msa1376070 | 0.816844 | 4.483818e-52 | -8.615850e-47 |
| Msa1136060 | Msa1378400 | 0.802407 | 5.692408e-49 | -8.615850e-47 |
| Msa1136060 | Msa1378950 | 0.853344 | 2.542397e-61 | -8.615850e-47 |
| Msa1136060 | Msa1380490 | 0.840542 | 8.169512e-58 | -8.615850e-47 |
| Msa1136060 | Msa1384980 | -0.806456 | 8.155032e-50 | -8.615850e-47 |
| Msa1136060 | Msa1386120 | 0.803783 | 2.955956e-49 | -8.615850e-47 |
| Msa1136060 | Msa1393440 | 0.851755 | 7.219800e-61 | -8.615850e-47 |
| Msa1136060 | Msa1395690 | 0.844249 | 8.497453e-59 | -8.615850e-47 |
| Msa1136060 | Msa1396550 | 0.845224 | 4.640861e-59 | -8.615850e-47 |
| Msa1136060 | Msa1407210 | 0.839404 | 1.617356e-57 | -8.615850e-47 |
| Msa1136060 | Msa1409600 | 0.826304 | 2.918954e-54 | -8.615850e-47 |
| Msa1136060 | Msa1417220 | 0.805591 | 1.240075e-49 | -8.615850e-47 |
| Msa1136060 | Msa1421120 | 0.805462 | 1.319597e-49 | -8.615850e-47 |
| Msa1136060 | Msa1426420 | 0.811808 | 5.817112e-51 | -8.615850e-47 |
| Msa1136060 | Msa1427670 | 0.803239 | 3.832399e-49 | -8.615850e-47 |
| Msa1136060 | Msa1434700 | 0.820941 | 5.257175e-53 | -8.615850e-47 |
| Msa1136060 | Msa1445780 | 0.810165 | 1.320054e-50 | -8.615850e-47 |
| Msa1136060 | Msa1445900 | 0.841229 | 5.392750e-58 | -8.615850e-47 |
| Msa1136060 | Msa1447790 | 0.826145 | 3.186236e-54 | -8.615850e-47 |
| Msa1136060 | Msa1447900 | 0.812610 | 3.888007e-51 | -8.615850e-47 |
| Msa1136060 | Msa1451660 | 0.817645 | 2.961092e-52 | -8.615850e-47 |
| Msa1136060 | Msa1459610 | 0.808687 | 2.740624e-50 | -8.615850e-47 |
| Msa0487100 | Msa1136060 | 0.827714 | 1.343009e-54 | -8.615850e-47 |
| Msa0491760 | Msa1136060 | 0.805965 | 1.034876e-49 | -8.615850e-47 |
| Msa0531030 | Msa1136060 | 0.826696 | 2.354319e-54 | -8.615850e-47 |
| Msa0531080 | Msa1136060 | 0.830706 | 2.524371e-55 | -8.615850e-47 |
| Msa0533510 | Msa1136060 | 0.846785 | 1.746101e-59 | -8.615850e-47 |
| Msa0533520 | Msa1136060 | 0.809290 | 2.035359e-50 | -8.615850e-47 |
| Msa0543740 | Msa1136060 | 0.805328 | 1.407546e-49 | -8.615850e-47 |
| Msa0548760 | Msa1136060 | 0.809467 | 1.865531e-50 | -8.615850e-47 |
| Msa0548970 | Msa1136060 | 0.815053 | 1.125799e-51 | -8.615850e-47 |
| Msa0549970 | Msa1136060 | 0.810256 | 1.261926e-50 | -8.615850e-47 |
| Msa0556720 | Msa1136060 | 0.809179 | 2.150294e-50 | -8.615850e-47 |
| Msa0587920 | Msa1136060 | 0.821772 | 3.379773e-53 | -8.615850e-47 |
| Msa0589460 | Msa1136060 | 0.829767 | 4.281031e-55 | -8.615850e-47 |
| Msa0589720 | Msa1136060 | 0.811481 | 6.852992e-51 | -8.615850e-47 |
| Msa0601920 | Msa1136060 | 0.802326 | 5.915284e-49 | -8.615850e-47 |
| Msa0854380 | Msa1136060 | 0.809275 | 2.050364e-50 | -8.615850e-47 |
| Msa0868040 | Msa1136060 | -0.801819 | 7.520163e-49 | -8.615850e-47 |
| Msa0883610 | Msa1136060 | 0.834031 | 3.791963e-56 | -8.615850e-47 |
| Msa0883640 | Msa1136060 | 0.814831 | 1.260947e-51 | -8.615850e-47 |
| Msa0896920 | Msa1136060 | 0.812009 | 5.258594e-51 | -8.615850e-47 |
| Msa0910570 | Msa1136060 | 0.830506 | 2.826589e-55 | -8.615850e-47 |
| Msa0910830 | Msa1136060 | 0.817746 | 2.810936e-52 | -8.615850e-47 |
| Msa0913550 | Msa1136060 | 0.828711 | 7.723200e-55 | -8.615850e-47 |
| Msa0948460 | Msa1136060 | 0.807355 | 5.263807e-50 | -8.615850e-47 |
| Msa0960090 | Msa1136060 | 0.816905 | 4.344747e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136060 | MtrunA17_Chr3g0145981 | 57.692 | 312 | 111 | 6 | 16 | 324 | 34 | 327 | 1.48e-120 | 350 |
| Msa1136060 | MtrunA17_Chr8g0370851 | 49.835 | 303 | 136 | 6 | 30 | 324 | 21 | 315 | 1.23e-98 | 294 |
| Msa1136060 | MtrunA17_Chr8g0370821 | 51.325 | 302 | 130 | 6 | 30 | 322 | 31 | 324 | 7.35e-97 | 290 |
| Msa1136060 | MtrunA17_Chr8g0370831 | 46.302 | 311 | 135 | 5 | 30 | 329 | 20 | 309 | 3.52e-87 | 264 |
| Msa1136060 | MtrunA17_Chr7g0270841 | 39.167 | 240 | 135 | 5 | 87 | 322 | 39 | 271 | 1.62e-58 | 189 |
| Msa1136060 | MtrunA17_Chr2g0329791 | 34.049 | 326 | 164 | 10 | 1 | 322 | 4 | 282 | 1.61e-51 | 172 |
| Msa1136060 | MtrunA17_Chr2g0329781 | 34.843 | 287 | 141 | 8 | 44 | 322 | 15 | 263 | 2.37e-49 | 166 |
| Msa1136060 | MtrunA17_Chr7g0221751 | 36.327 | 245 | 136 | 10 | 93 | 324 | 69 | 306 | 2.58e-39 | 141 |
| Msa1136060 | MtrunA17_Chr2g0294721 | 34.934 | 229 | 137 | 6 | 93 | 314 | 65 | 288 | 2.33e-38 | 138 |
| Msa1136060 | MtrunA17_Chr1g0206111 | 31.949 | 313 | 171 | 12 | 15 | 314 | 11 | 294 | 3.05e-38 | 138 |
| Msa1136060 | MtrunA17_Chr7g0274181 | 49.153 | 59 | 27 | 1 | 14 | 72 | 3 | 58 | 1.03e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136060 | AT3G12500.1 | 54.333 | 300 | 126 | 5 | 33 | 328 | 34 | 326 | 3.06e-107 | 317 |
| Msa1136060 | AT4G01700.1 | 42.500 | 240 | 127 | 5 | 87 | 322 | 41 | 273 | 2.11e-63 | 202 |
| Msa1136060 | AT1G02360.1 | 40.496 | 242 | 133 | 5 | 85 | 322 | 31 | 265 | 8.29e-60 | 193 |
| Msa1136060 | AT1G02360.2 | 40.496 | 242 | 133 | 5 | 85 | 322 | 77 | 311 | 3.28e-59 | 193 |
| Msa1136060 | AT1G02360.3 | 40.496 | 242 | 133 | 5 | 85 | 322 | 83 | 317 | 4.79e-59 | 193 |
| Msa1136060 | AT3G54420.1 | 35.505 | 307 | 151 | 8 | 17 | 322 | 13 | 273 | 2.61e-54 | 179 |
| Msa1136060 | AT2G43590.1 | 34.164 | 281 | 138 | 9 | 44 | 322 | 29 | 264 | 9.77e-48 | 162 |
| Msa1136060 | AT2G43610.1 | 32.710 | 321 | 155 | 10 | 14 | 322 | 10 | 281 | 5.46e-47 | 160 |
| Msa1136060 | AT2G43620.1 | 34.000 | 300 | 139 | 11 | 37 | 322 | 29 | 283 | 1.67e-46 | 159 |
| Msa1136060 | AT2G43570.1 | 31.193 | 327 | 162 | 13 | 3 | 322 | 7 | 277 | 5.12e-44 | 152 |
| Msa1136060 | AT2G43580.1 | 31.071 | 280 | 149 | 5 | 44 | 322 | 29 | 265 | 1.19e-43 | 151 |
| Msa1136060 | AT3G16920.1 | 34.348 | 230 | 137 | 8 | 93 | 314 | 77 | 300 | 1.26e-37 | 137 |
| Msa1136060 | AT3G16920.2 | 34.348 | 230 | 137 | 8 | 93 | 314 | 101 | 324 | 1.87e-37 | 137 |
| Msa1136060 | AT1G05850.1 | 31.045 | 335 | 185 | 16 | 3 | 324 | 5 | 306 | 2.49e-37 | 136 |
| Msa1136060 | AT1G05850.2 | 31.045 | 335 | 185 | 16 | 3 | 324 | 5 | 306 | 2.49e-37 | 136 |
| Msa1136060 | AT2G43600.1 | 32.042 | 284 | 137 | 12 | 49 | 322 | 36 | 273 | 3.01e-35 | 129 |
| Msa1136060 | AT2G43600.2 | 32.042 | 284 | 137 | 12 | 49 | 322 | 57 | 294 | 5.84e-35 | 129 |
| Msa1136060 | AT1G56680.1 | 31.206 | 282 | 143 | 10 | 49 | 322 | 42 | 280 | 6.74e-33 | 123 |
| Msa1136060 | AT1G56680.2 | 31.206 | 282 | 143 | 10 | 49 | 322 | 65 | 303 | 1.20e-32 | 123 |
| Msa1136060 | AT3G47540.1 | 25.316 | 237 | 121 | 9 | 87 | 322 | 33 | 214 | 4.97e-16 | 76.3 |
| Msa1136060 | AT3G47540.2 | 24.576 | 236 | 122 | 9 | 87 | 321 | 33 | 213 | 2.86e-14 | 72.4 |
Find 113 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCTTCGTTGCCGAACC+TGG | 0.245191 | 7_4:+4012472 | None:intergenic |
| CAGAGGAGGTTTCCAGGATA+TGG | 0.257878 | 7_4:-4012035 | Msa1136060:CDS |
| TTGTCTGCCCAACACCTTCC+TGG | 0.285066 | 7_4:+4012770 | None:intergenic |
| ATCAAAGGCAATAAAATATA+TGG | 0.293433 | 7_4:-4012248 | Msa1136060:CDS |
| TCTAAATTTCCATGTGTTCC+TGG | 0.293914 | 7_4:-4012302 | Msa1136060:CDS |
| GGAGAATGTGGAAGTATAAT+AGG | 0.323922 | 7_4:-4012227 | Msa1136060:CDS |
| GCCGAACCTGGGGAATGTTT+TGG | 0.339992 | 7_4:+4012484 | None:intergenic |
| TCTTGCCATGACGCTATAAC+TGG | 0.341250 | 7_4:-4012089 | Msa1136060:CDS |
| TTCACAAAGGATGGGGAGAT+TGG | 0.341429 | 7_4:-4012852 | None:intergenic |
| AAAGCAATATCCCCGGTCAT+AGG | 0.342897 | 7_4:+4012370 | None:intergenic |
| CATGGCAAGATGGCTTTACT+TGG | 0.351502 | 7_4:+4012102 | None:intergenic |
| GGGTCTGTGGCAATGAGATC+TGG | 0.352495 | 7_4:+4012185 | None:intergenic |
| GCACTCTTGAAGGATATAAC+AGG | 0.377927 | 7_4:+4012164 | None:intergenic |
| TCCTCTGGAGTTGGAGGAGG+AGG | 0.393578 | 7_4:+4012614 | None:intergenic |
| GTTAGTCAGAGGAGGTTTCC+AGG | 0.398397 | 7_4:-4012041 | Msa1136060:CDS |
| GGCTGGAAGGAATGCGCGAC+CGG | 0.412108 | 7_4:-4011990 | Msa1136060:CDS |
| GGAATGCGCGACCGGGTGGC+TGG | 0.413441 | 7_4:-4011982 | Msa1136060:CDS |
| TACTCCTCCTCTGGAGTTGG+AGG | 0.424138 | 7_4:+4012608 | None:intergenic |
| TCTGGAGTTGGAGGAGGAGG+AGG | 0.434178 | 7_4:+4012617 | None:intergenic |
| AAGCAATATCCCCGGTCATA+GGG | 0.440767 | 7_4:+4012371 | None:intergenic |
| ATACCATATAGCACTCTTGA+AGG | 0.443225 | 7_4:+4012154 | None:intergenic |
| TCTCCTTCGTTGCCGAACCT+GGG | 0.454761 | 7_4:+4012473 | None:intergenic |
| GCCAAAACATTCCCCAGGTT+CGG | 0.455985 | 7_4:-4012485 | Msa1136060:CDS |
| ATGAGATATTGTGACATACT+TGG | 0.456754 | 7_4:-4011927 | Msa1136060:CDS |
| AAGAAAATTCAAAACATTCA+AGG | 0.456837 | 7_4:+4011886 | None:intergenic |
| TCACAAAGGATGGGGAGATT+GGG | 0.457705 | 7_4:-4012851 | None:intergenic |
| CTAAATTTCCATGTGTTCCT+GGG | 0.462737 | 7_4:-4012301 | Msa1136060:CDS |
| ACACATGGAAATTTAGAGCT+TGG | 0.463623 | 7_4:+4012308 | None:intergenic |
| TCCTCCTCTGGAGTTGGAGG+AGG | 0.463847 | 7_4:+4012611 | None:intergenic |
| CACCTCTTAGCCCCTATGAC+CGG | 0.464103 | 7_4:-4012382 | Msa1136060:CDS |
| TCAAGAGTGCTATATGGTAT+TGG | 0.468474 | 7_4:-4012151 | Msa1136060:CDS |
| TTCGCAGTAGTCTTCTTCGA+TGG | 0.468797 | 7_4:+4012331 | None:intergenic |
| TATCCTTCAAGAGTGCTATA+TGG | 0.471202 | 7_4:-4012157 | Msa1136060:CDS |
| ACCTCTTAGCCCCTATGACC+GGG | 0.474353 | 7_4:-4012381 | Msa1136060:CDS |
| CAAGATGGCTTTACTTGGAA+AGG | 0.478902 | 7_4:+4012107 | None:intergenic |
| TTATTGCCTTTGATCTGAAA+CGG | 0.479679 | 7_4:+4012257 | None:intergenic |
| TGACTAACATCAAAATCAGT+AGG | 0.481832 | 7_4:+4012056 | None:intergenic |
| CTCCCGTAGTATTGCTTCCC+AGG | 0.483969 | 7_4:+4012284 | None:intergenic |
| ATGAATTATGCTGCAGTGCA+TGG | 0.488295 | 7_4:-4012706 | Msa1136060:CDS |
| AGCATCACCAGGAAGGTGTT+GGG | 0.489004 | 7_4:-4012777 | Msa1136060:CDS |
| TCGCAGTAGTCTTCTTCGAT+GGG | 0.491948 | 7_4:+4012332 | None:intergenic |
| CCCCGGTCATAGGGGCTAAG+AGG | 0.498386 | 7_4:+4012380 | None:intergenic |
| AGAGGAGGTTTCCAGGATAT+GGG | 0.498919 | 7_4:-4012034 | Msa1136060:CDS |
| AAGATGGCTTTACTTGGAAA+GGG | 0.503243 | 7_4:+4012108 | None:intergenic |
| ATGACCACATACGTCATAGA+AGG | 0.503651 | 7_4:-4012011 | Msa1136060:CDS |
| GAGCAATGTGGAAAACAAGC+TGG | 0.504321 | 7_4:-4012746 | Msa1136060:CDS |
| AGGTACTCCTCCTCTGGAGT+TGG | 0.506666 | 7_4:+4012605 | None:intergenic |
| TAGCATCACCAGGAAGGTGT+TGG | 0.507093 | 7_4:-4012778 | Msa1136060:CDS |
| GAGATGAGGTACTCCTCCTC+TGG | 0.514140 | 7_4:+4012599 | None:intergenic |
| TATGTGGTCATCCCATATCC+TGG | 0.517764 | 7_4:+4012023 | None:intergenic |
| GGATGTAAACGAGATGGATC+GGG | 0.521846 | 7_4:-4011961 | Msa1136060:CDS |
| TGAATTATGCTGCAGTGCAT+GGG | 0.527534 | 7_4:-4012705 | Msa1136060:CDS |
| GGCAACCCTTGCCGCAGTAG+TGG | 0.533175 | 7_4:+4012663 | None:intergenic |
| GGAGTACCTCATCTCGAGAA+AGG | 0.538404 | 7_4:-4012591 | Msa1136060:CDS |
| GGCTTTACTTGGAAAGGGAA+AGG | 0.540330 | 7_4:+4012113 | None:intergenic |
| ACCGACCACTACTGCGGCAA+GGG | 0.546092 | 7_4:-4012668 | Msa1136060:CDS |
| GGTCTGTGGCAATGAGATCT+GGG | 0.547304 | 7_4:+4012186 | None:intergenic |
| TAGTTCCATTACATTGACTC+TGG | 0.548638 | 7_4:+4012642 | None:intergenic |
| TGGATGTAAACGAGATGGAT+CGG | 0.553901 | 7_4:-4011962 | Msa1136060:CDS |
| ACTTGGAAAGGGAAAGGTGG+AGG | 0.555116 | 7_4:+4012119 | None:intergenic |
| AGCAATGTGGAAAACAAGCT+GGG | 0.556737 | 7_4:-4012745 | Msa1136060:CDS |
| AATAAAATATATGGAGAATG+TGG | 0.556765 | 7_4:-4012239 | Msa1136060:CDS |
| GACATACTTGGAGTTCGATA+CGG | 0.558585 | 7_4:-4011915 | Msa1136060:CDS |
| AAGCTGCCAAAACATTCCCC+AGG | 0.566465 | 7_4:-4012490 | Msa1136060:CDS |
| ACCCTTGCCGCAGTAGTGGT+CGG | 0.568655 | 7_4:+4012667 | None:intergenic |
| TCCTCCTCCAACTCCAGAGG+AGG | 0.569915 | 7_4:-4012612 | Msa1136060:CDS |
| GAAACTGGAATATTACACTT+CGG | 0.571315 | 7_4:+4012828 | None:intergenic |
| CTCGTTTACATCCAGCCACC+CGG | 0.571779 | 7_4:+4011971 | None:intergenic |
| GATGATGAGTGTGAGGGGAA+AGG | 0.572756 | 7_4:-4012539 | Msa1136060:CDS |
| GCTGGAAGGAATGCGCGACC+GGG | 0.573064 | 7_4:-4011989 | Msa1136060:CDS |
| AGCTCTCACAAAACAAGAGG+TGG | 0.574719 | 7_4:-4012407 | Msa1136060:CDS |
| GGAAGGAATGCGCGACCGGG+TGG | 0.575460 | 7_4:-4011986 | Msa1136060:CDS |
| CTCCTTCGTTGCCGAACCTG+GGG | 0.576604 | 7_4:+4012474 | None:intergenic |
| GACTAACATCAAAATCAGTA+GGG | 0.576729 | 7_4:+4012057 | None:intergenic |
| AGGGGTCCGTTTCAGATCAA+AGG | 0.577126 | 7_4:-4012263 | Msa1136060:CDS |
| TCCTCCTCCTCCAACTCCAG+AGG | 0.577892 | 7_4:-4012615 | Msa1136060:CDS |
| GGTTGCCAGAGTCAATGTAA+TGG | 0.579858 | 7_4:-4012647 | Msa1136060:CDS |
| TATTGCTTCCCAGGAACACA+TGG | 0.580157 | 7_4:+4012293 | None:intergenic |
| CCACATACGTCATAGAAGGC+TGG | 0.581811 | 7_4:-4012007 | Msa1136060:CDS |
| GTTATAGCGTCATGGCAAGA+TGG | 0.583768 | 7_4:+4012092 | None:intergenic |
| TTCCTGGGAAGCAATACTAC+GGG | 0.585236 | 7_4:-4012286 | Msa1136060:CDS |
| TTCCCCAGGTTCGGCAACGA+AGG | 0.585501 | 7_4:-4012476 | Msa1136060:CDS |
| GTTCCTGGGAAGCAATACTA+CGG | 0.592317 | 7_4:-4012287 | Msa1136060:CDS |
| AACCGACCACTACTGCGGCA+AGG | 0.593325 | 7_4:-4012669 | Msa1136060:CDS |
| GTGGCTGGATGTAAACGAGA+TGG | 0.595690 | 7_4:-4011967 | Msa1136060:CDS |
| CCAGCCTTCTATGACGTATG+TGG | 0.595690 | 7_4:+4012007 | None:intergenic |
| TGAAATCCTTTCTCGAGATG+AGG | 0.601183 | 7_4:+4012585 | None:intergenic |
| CACTCTTGAAGGATATAACA+GGG | 0.603547 | 7_4:+4012165 | None:intergenic |
| CATTCATAAAGCAATATCCC+CGG | 0.604590 | 7_4:+4012363 | None:intergenic |
| AGGCAGACCGGATCAAGAGA+TGG | 0.605959 | 7_4:+4011857 | None:intergenic |
| ATCGTCCAGTTATAGCGTCA+TGG | 0.607533 | 7_4:+4012084 | None:intergenic |
| CGCGACGATGATGAGTGTGA+GGG | 0.608511 | 7_4:-4012545 | Msa1136060:CDS |
| CTACTAATTATAGCATCACC+AGG | 0.609536 | 7_4:-4012788 | Msa1136060:CDS |
| CTGGGAAGCAATACTACGGG+AGG | 0.613705 | 7_4:-4012283 | Msa1136060:CDS |
| TCGCGACGATGATGAGTGTG+AGG | 0.615130 | 7_4:-4012546 | Msa1136060:CDS |
| AGCAATATCCCCGGTCATAG+GGG | 0.615444 | 7_4:+4012372 | None:intergenic |
| GAAGGATATAACAGGGTCTG+TGG | 0.619235 | 7_4:+4012172 | None:intergenic |
| CCTCTTAGCCCCTATGACCG+GGG | 0.619811 | 7_4:-4012380 | Msa1136060:CDS |
| TGGGAAGCAATACTACGGGA+GGG | 0.621104 | 7_4:-4012282 | Msa1136060:CDS |
| GGGAAGCAATACTACGGGAG+GGG | 0.628496 | 7_4:-4012281 | Msa1136060:CDS |
| CAAAGCTCTCACAAAACAAG+AGG | 0.630156 | 7_4:-4012410 | Msa1136060:CDS |
| TAATTATAGCATCACCAGGA+AGG | 0.639520 | 7_4:-4012784 | Msa1136060:CDS |
| GTAAACGAGATGGATCGGGT+TGG | 0.643330 | 7_4:-4011957 | Msa1136060:CDS |
| TTTACTTGGAAAGGGAAAGG+TGG | 0.645661 | 7_4:+4012116 | None:intergenic |
| GCAATGTGGAAAACAAGCTG+GGG | 0.650439 | 7_4:-4012744 | Msa1136060:CDS |
| ATACGTCATAGAAGGCTGGA+AGG | 0.655440 | 7_4:-4012003 | Msa1136060:CDS |
| AGCTTCAACAAATCCTTCGT+AGG | 0.660013 | 7_4:+4012508 | None:intergenic |
| GAATTATGCTGCAGTGCATG+GGG | 0.669091 | 7_4:-4012704 | Msa1136060:CDS |
| GCGACGATGATGAGTGTGAG+GGG | 0.672599 | 7_4:-4012544 | Msa1136060:CDS |
| ATGACGCTATAACTGGACGA+TGG | 0.672926 | 7_4:-4012082 | Msa1136060:CDS |
| GGATCAACCGACCACTACTG+CGG | 0.690258 | 7_4:-4012674 | Msa1136060:CDS |
| CAATGTGGAAAACAAGCTGG+GGG | 0.710643 | 7_4:-4012743 | Msa1136060:CDS |
| TGGGCAGACAAAGAGCAATG+TGG | 0.733933 | 7_4:-4012758 | Msa1136060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAGGCAATAAAATATA+TGG | - | chr7_4:4012463-4012482 | Msa1136060:CDS | 20.0% |
| !! | AATAAAATATATGGAGAATG+TGG | - | chr7_4:4012472-4012491 | Msa1136060:CDS | 20.0% |
| !! | AAGAAAATTCAAAACATTCA+AGG | + | chr7_4:4012828-4012847 | None:intergenic | 20.0% |
| !! | ATCAAAGGCAATAAAATATA+TGG | - | chr7_4:4012463-4012482 | Msa1136060:CDS | 20.0% |
| !! | AATAAAATATATGGAGAATG+TGG | - | chr7_4:4012472-4012491 | Msa1136060:CDS | 20.0% |
| !! | AAGAAAATTCAAAACATTCA+AGG | + | chr7_4:4012828-4012847 | None:intergenic | 20.0% |
| !!! | AGTAGTACTATTGCTATTTT+TGG | + | chr7_4:4011908-4011927 | None:intergenic | 25.0% |
| !!! | AGTAGTACTATTGCTATTTT+TGG | + | chr7_4:4011908-4011927 | None:intergenic | 25.0% |
| GAAACTGGAATATTACACTT+CGG | + | chr7_4:4011886-4011905 | None:intergenic | 30.0% | |
| !!! | CTATTGCTATTTTTGGAAAC+TGG | + | chr7_4:4011901-4011920 | None:intergenic | 30.0% |
| TTATTGCCTTTGATCTGAAA+CGG | + | chr7_4:4012457-4012476 | None:intergenic | 30.0% | |
| GACTAACATCAAAATCAGTA+GGG | + | chr7_4:4012657-4012676 | None:intergenic | 30.0% | |
| TGACTAACATCAAAATCAGT+AGG | + | chr7_4:4012658-4012677 | None:intergenic | 30.0% | |
| ATGAGATATTGTGACATACT+TGG | - | chr7_4:4012784-4012803 | Msa1136060:CDS | 30.0% | |
| GAAACTGGAATATTACACTT+CGG | + | chr7_4:4011886-4011905 | None:intergenic | 30.0% | |
| !!! | CTATTGCTATTTTTGGAAAC+TGG | + | chr7_4:4011901-4011920 | None:intergenic | 30.0% |
| TTATTGCCTTTGATCTGAAA+CGG | + | chr7_4:4012457-4012476 | None:intergenic | 30.0% | |
| GACTAACATCAAAATCAGTA+GGG | + | chr7_4:4012657-4012676 | None:intergenic | 30.0% | |
| TGACTAACATCAAAATCAGT+AGG | + | chr7_4:4012658-4012677 | None:intergenic | 30.0% | |
| ATGAGATATTGTGACATACT+TGG | - | chr7_4:4012784-4012803 | Msa1136060:CDS | 30.0% | |
| CTACTAATTATAGCATCACC+AGG | - | chr7_4:4011923-4011942 | Msa1136060:CDS | 35.0% | |
| TAATTATAGCATCACCAGGA+AGG | - | chr7_4:4011927-4011946 | Msa1136060:CDS | 35.0% | |
| !! | TAGTTCCATTACATTGACTC+TGG | + | chr7_4:4012072-4012091 | None:intergenic | 35.0% |
| ! | AAAGGATTTTACACCTACGA+AGG | - | chr7_4:4012190-4012209 | Msa1136060:CDS | 35.0% |
| !!! | AGAGACATTGCTGCTTTTTT+TGG | - | chr7_4:4012277-4012296 | Msa1136060:CDS | 35.0% |
| CATTCATAAAGCAATATCCC+CGG | + | chr7_4:4012351-4012370 | None:intergenic | 35.0% | |
| ! | ACACATGGAAATTTAGAGCT+TGG | + | chr7_4:4012406-4012425 | None:intergenic | 35.0% |
| TCTAAATTTCCATGTGTTCC+TGG | - | chr7_4:4012409-4012428 | Msa1136060:CDS | 35.0% | |
| CTAAATTTCCATGTGTTCCT+GGG | - | chr7_4:4012410-4012429 | Msa1136060:CDS | 35.0% | |
| ! | GGAGAATGTGGAAGTATAAT+AGG | - | chr7_4:4012484-4012503 | Msa1136060:CDS | 35.0% |
| CACTCTTGAAGGATATAACA+GGG | + | chr7_4:4012549-4012568 | None:intergenic | 35.0% | |
| !! | TATCCTTCAAGAGTGCTATA+TGG | - | chr7_4:4012554-4012573 | Msa1136060:CDS | 35.0% |
| ATACCATATAGCACTCTTGA+AGG | + | chr7_4:4012560-4012579 | None:intergenic | 35.0% | |
| !! | TCAAGAGTGCTATATGGTAT+TGG | - | chr7_4:4012560-4012579 | Msa1136060:CDS | 35.0% |
| ! | AAGATGGCTTTACTTGGAAA+GGG | + | chr7_4:4012606-4012625 | None:intergenic | 35.0% |
| !! | CTGATTTTGATGTTAGTCAG+AGG | - | chr7_4:4012659-4012678 | Msa1136060:CDS | 35.0% |
| !! | ATTTTGATGTTAGTCAGAGG+AGG | - | chr7_4:4012662-4012681 | Msa1136060:CDS | 35.0% |
| CTACTAATTATAGCATCACC+AGG | - | chr7_4:4011923-4011942 | Msa1136060:CDS | 35.0% | |
| TAATTATAGCATCACCAGGA+AGG | - | chr7_4:4011927-4011946 | Msa1136060:CDS | 35.0% | |
| !! | TAGTTCCATTACATTGACTC+TGG | + | chr7_4:4012072-4012091 | None:intergenic | 35.0% |
| ! | AAAGGATTTTACACCTACGA+AGG | - | chr7_4:4012190-4012209 | Msa1136060:CDS | 35.0% |
| !!! | AGAGACATTGCTGCTTTTTT+TGG | - | chr7_4:4012277-4012296 | Msa1136060:CDS | 35.0% |
| CATTCATAAAGCAATATCCC+CGG | + | chr7_4:4012351-4012370 | None:intergenic | 35.0% | |
| ! | ACACATGGAAATTTAGAGCT+TGG | + | chr7_4:4012406-4012425 | None:intergenic | 35.0% |
| TCTAAATTTCCATGTGTTCC+TGG | - | chr7_4:4012409-4012428 | Msa1136060:CDS | 35.0% | |
| CTAAATTTCCATGTGTTCCT+GGG | - | chr7_4:4012410-4012429 | Msa1136060:CDS | 35.0% | |
| ! | GGAGAATGTGGAAGTATAAT+AGG | - | chr7_4:4012484-4012503 | Msa1136060:CDS | 35.0% |
| CACTCTTGAAGGATATAACA+GGG | + | chr7_4:4012549-4012568 | None:intergenic | 35.0% | |
| !! | TATCCTTCAAGAGTGCTATA+TGG | - | chr7_4:4012554-4012573 | Msa1136060:CDS | 35.0% |
| ATACCATATAGCACTCTTGA+AGG | + | chr7_4:4012560-4012579 | None:intergenic | 35.0% | |
| !! | TCAAGAGTGCTATATGGTAT+TGG | - | chr7_4:4012560-4012579 | Msa1136060:CDS | 35.0% |
| ! | AAGATGGCTTTACTTGGAAA+GGG | + | chr7_4:4012606-4012625 | None:intergenic | 35.0% |
| !! | CTGATTTTGATGTTAGTCAG+AGG | - | chr7_4:4012659-4012678 | Msa1136060:CDS | 35.0% |
| !! | ATTTTGATGTTAGTCAGAGG+AGG | - | chr7_4:4012662-4012681 | Msa1136060:CDS | 35.0% |
| AGCAATGTGGAAAACAAGCT+GGG | - | chr7_4:4011966-4011985 | Msa1136060:CDS | 40.0% | |
| ATGAATTATGCTGCAGTGCA+TGG | - | chr7_4:4012005-4012024 | Msa1136060:CDS | 40.0% | |
| TGAATTATGCTGCAGTGCAT+GGG | - | chr7_4:4012006-4012025 | Msa1136060:CDS | 40.0% | |
| TGAAATCCTTTCTCGAGATG+AGG | + | chr7_4:4012129-4012148 | None:intergenic | 40.0% | |
| AGCTTCAACAAATCCTTCGT+AGG | + | chr7_4:4012206-4012225 | None:intergenic | 40.0% | |
| CAAAGCTCTCACAAAACAAG+AGG | - | chr7_4:4012301-4012320 | Msa1136060:CDS | 40.0% | |
| GCACTCTTGAAGGATATAAC+AGG | + | chr7_4:4012550-4012569 | None:intergenic | 40.0% | |
| TTTACTTGGAAAGGGAAAGG+TGG | + | chr7_4:4012598-4012617 | None:intergenic | 40.0% | |
| ! | CAAGATGGCTTTACTTGGAA+AGG | + | chr7_4:4012607-4012626 | None:intergenic | 40.0% |
| ATGACCACATACGTCATAGA+AGG | - | chr7_4:4012700-4012719 | Msa1136060:CDS | 40.0% | |
| TGGATGTAAACGAGATGGAT+CGG | - | chr7_4:4012749-4012768 | Msa1136060:CDS | 40.0% | |
| GACATACTTGGAGTTCGATA+CGG | - | chr7_4:4012796-4012815 | Msa1136060:CDS | 40.0% | |
| AGCAATGTGGAAAACAAGCT+GGG | - | chr7_4:4011966-4011985 | Msa1136060:CDS | 40.0% | |
| ATGAATTATGCTGCAGTGCA+TGG | - | chr7_4:4012005-4012024 | Msa1136060:CDS | 40.0% | |
| TGAATTATGCTGCAGTGCAT+GGG | - | chr7_4:4012006-4012025 | Msa1136060:CDS | 40.0% | |
| TGAAATCCTTTCTCGAGATG+AGG | + | chr7_4:4012129-4012148 | None:intergenic | 40.0% | |
| AGCTTCAACAAATCCTTCGT+AGG | + | chr7_4:4012206-4012225 | None:intergenic | 40.0% | |
| CAAAGCTCTCACAAAACAAG+AGG | - | chr7_4:4012301-4012320 | Msa1136060:CDS | 40.0% | |
| GCACTCTTGAAGGATATAAC+AGG | + | chr7_4:4012550-4012569 | None:intergenic | 40.0% | |
| TTTACTTGGAAAGGGAAAGG+TGG | + | chr7_4:4012598-4012617 | None:intergenic | 40.0% | |
| ! | CAAGATGGCTTTACTTGGAA+AGG | + | chr7_4:4012607-4012626 | None:intergenic | 40.0% |
| ATGACCACATACGTCATAGA+AGG | - | chr7_4:4012700-4012719 | Msa1136060:CDS | 40.0% | |
| TGGATGTAAACGAGATGGAT+CGG | - | chr7_4:4012749-4012768 | Msa1136060:CDS | 40.0% | |
| GACATACTTGGAGTTCGATA+CGG | - | chr7_4:4012796-4012815 | Msa1136060:CDS | 40.0% | |
| GAGCAATGTGGAAAACAAGC+TGG | - | chr7_4:4011965-4011984 | Msa1136060:CDS | 45.0% | |
| GCAATGTGGAAAACAAGCTG+GGG | - | chr7_4:4011967-4011986 | Msa1136060:CDS | 45.0% | |
| CAATGTGGAAAACAAGCTGG+GGG | - | chr7_4:4011968-4011987 | Msa1136060:CDS | 45.0% | |
| GAATTATGCTGCAGTGCATG+GGG | - | chr7_4:4012007-4012026 | Msa1136060:CDS | 45.0% | |
| GGTTGCCAGAGTCAATGTAA+TGG | - | chr7_4:4012064-4012083 | Msa1136060:CDS | 45.0% | |
| AGCTCTCACAAAACAAGAGG+TGG | - | chr7_4:4012304-4012323 | Msa1136060:CDS | 45.0% | |
| AAGCAATATCCCCGGTCATA+GGG | + | chr7_4:4012343-4012362 | None:intergenic | 45.0% | |
| AAAGCAATATCCCCGGTCAT+AGG | + | chr7_4:4012344-4012363 | None:intergenic | 45.0% | |
| TCGCAGTAGTCTTCTTCGAT+GGG | + | chr7_4:4012382-4012401 | None:intergenic | 45.0% | |
| TTCGCAGTAGTCTTCTTCGA+TGG | + | chr7_4:4012383-4012402 | None:intergenic | 45.0% | |
| TATTGCTTCCCAGGAACACA+TGG | + | chr7_4:4012421-4012440 | None:intergenic | 45.0% | |
| GTTCCTGGGAAGCAATACTA+CGG | - | chr7_4:4012424-4012443 | Msa1136060:CDS | 45.0% | |
| TTCCTGGGAAGCAATACTAC+GGG | - | chr7_4:4012425-4012444 | Msa1136060:CDS | 45.0% | |
| GAAGGATATAACAGGGTCTG+TGG | + | chr7_4:4012542-4012561 | None:intergenic | 45.0% | |
| GGCTTTACTTGGAAAGGGAA+AGG | + | chr7_4:4012601-4012620 | None:intergenic | 45.0% | |
| ! | CATGGCAAGATGGCTTTACT+TGG | + | chr7_4:4012612-4012631 | None:intergenic | 45.0% |
| GTTATAGCGTCATGGCAAGA+TGG | + | chr7_4:4012622-4012641 | None:intergenic | 45.0% | |
| TCTTGCCATGACGCTATAAC+TGG | - | chr7_4:4012622-4012641 | Msa1136060:CDS | 45.0% | |
| ATCGTCCAGTTATAGCGTCA+TGG | + | chr7_4:4012630-4012649 | None:intergenic | 45.0% | |
| ATGACGCTATAACTGGACGA+TGG | - | chr7_4:4012629-4012648 | Msa1136060:CDS | 45.0% | |
| AGAGGAGGTTTCCAGGATAT+GGG | - | chr7_4:4012677-4012696 | Msa1136060:CDS | 45.0% | |
| TATGTGGTCATCCCATATCC+TGG | + | chr7_4:4012691-4012710 | None:intergenic | 45.0% | |
| ATACGTCATAGAAGGCTGGA+AGG | - | chr7_4:4012708-4012727 | Msa1136060:CDS | 45.0% | |
| GGATGTAAACGAGATGGATC+GGG | - | chr7_4:4012750-4012769 | Msa1136060:CDS | 45.0% | |
| GAGCAATGTGGAAAACAAGC+TGG | - | chr7_4:4011965-4011984 | Msa1136060:CDS | 45.0% | |
| GCAATGTGGAAAACAAGCTG+GGG | - | chr7_4:4011967-4011986 | Msa1136060:CDS | 45.0% | |
| CAATGTGGAAAACAAGCTGG+GGG | - | chr7_4:4011968-4011987 | Msa1136060:CDS | 45.0% | |
| GAATTATGCTGCAGTGCATG+GGG | - | chr7_4:4012007-4012026 | Msa1136060:CDS | 45.0% | |
| GGTTGCCAGAGTCAATGTAA+TGG | - | chr7_4:4012064-4012083 | Msa1136060:CDS | 45.0% | |
| AGCTCTCACAAAACAAGAGG+TGG | - | chr7_4:4012304-4012323 | Msa1136060:CDS | 45.0% | |
| AAGCAATATCCCCGGTCATA+GGG | + | chr7_4:4012343-4012362 | None:intergenic | 45.0% | |
| AAAGCAATATCCCCGGTCAT+AGG | + | chr7_4:4012344-4012363 | None:intergenic | 45.0% | |
| TCGCAGTAGTCTTCTTCGAT+GGG | + | chr7_4:4012382-4012401 | None:intergenic | 45.0% | |
| TTCGCAGTAGTCTTCTTCGA+TGG | + | chr7_4:4012383-4012402 | None:intergenic | 45.0% | |
| TATTGCTTCCCAGGAACACA+TGG | + | chr7_4:4012421-4012440 | None:intergenic | 45.0% | |
| GTTCCTGGGAAGCAATACTA+CGG | - | chr7_4:4012424-4012443 | Msa1136060:CDS | 45.0% | |
| TTCCTGGGAAGCAATACTAC+GGG | - | chr7_4:4012425-4012444 | Msa1136060:CDS | 45.0% | |
| GAAGGATATAACAGGGTCTG+TGG | + | chr7_4:4012542-4012561 | None:intergenic | 45.0% | |
| GGCTTTACTTGGAAAGGGAA+AGG | + | chr7_4:4012601-4012620 | None:intergenic | 45.0% | |
| ! | CATGGCAAGATGGCTTTACT+TGG | + | chr7_4:4012612-4012631 | None:intergenic | 45.0% |
| GTTATAGCGTCATGGCAAGA+TGG | + | chr7_4:4012622-4012641 | None:intergenic | 45.0% | |
| TCTTGCCATGACGCTATAAC+TGG | - | chr7_4:4012622-4012641 | Msa1136060:CDS | 45.0% | |
| ATCGTCCAGTTATAGCGTCA+TGG | + | chr7_4:4012630-4012649 | None:intergenic | 45.0% | |
| ATGACGCTATAACTGGACGA+TGG | - | chr7_4:4012629-4012648 | Msa1136060:CDS | 45.0% | |
| AGAGGAGGTTTCCAGGATAT+GGG | - | chr7_4:4012677-4012696 | Msa1136060:CDS | 45.0% | |
| TATGTGGTCATCCCATATCC+TGG | + | chr7_4:4012691-4012710 | None:intergenic | 45.0% | |
| ATACGTCATAGAAGGCTGGA+AGG | - | chr7_4:4012708-4012727 | Msa1136060:CDS | 45.0% | |
| GGATGTAAACGAGATGGATC+GGG | - | chr7_4:4012750-4012769 | Msa1136060:CDS | 45.0% | |
| ! | TAGCATCACCAGGAAGGTGT+TGG | - | chr7_4:4011933-4011952 | Msa1136060:CDS | 50.0% |
| !! | AGCATCACCAGGAAGGTGTT+GGG | - | chr7_4:4011934-4011953 | Msa1136060:CDS | 50.0% |
| TGGGCAGACAAAGAGCAATG+TGG | - | chr7_4:4011953-4011972 | Msa1136060:CDS | 50.0% | |
| ! | GGAGTACCTCATCTCGAGAA+AGG | - | chr7_4:4012120-4012139 | Msa1136060:CDS | 50.0% |
| GATGATGAGTGTGAGGGGAA+AGG | - | chr7_4:4012172-4012191 | Msa1136060:CDS | 50.0% | |
| AAGCTGCCAAAACATTCCCC+AGG | - | chr7_4:4012221-4012240 | Msa1136060:CDS | 50.0% | |
| GCCAAAACATTCCCCAGGTT+CGG | - | chr7_4:4012226-4012245 | Msa1136060:CDS | 50.0% | |
| AGCAATATCCCCGGTCATAG+GGG | + | chr7_4:4012342-4012361 | None:intergenic | 50.0% | |
| TGGGAAGCAATACTACGGGA+GGG | - | chr7_4:4012429-4012448 | Msa1136060:CDS | 50.0% | |
| AGGGGTCCGTTTCAGATCAA+AGG | - | chr7_4:4012448-4012467 | Msa1136060:CDS | 50.0% | |
| GGTCTGTGGCAATGAGATCT+GGG | + | chr7_4:4012528-4012547 | None:intergenic | 50.0% | |
| ACTTGGAAAGGGAAAGGTGG+AGG | + | chr7_4:4012595-4012614 | None:intergenic | 50.0% | |
| GTTAGTCAGAGGAGGTTTCC+AGG | - | chr7_4:4012670-4012689 | Msa1136060:CDS | 50.0% | |
| CAGAGGAGGTTTCCAGGATA+TGG | - | chr7_4:4012676-4012695 | Msa1136060:CDS | 50.0% | |
| CCAGCCTTCTATGACGTATG+TGG | + | chr7_4:4012707-4012726 | None:intergenic | 50.0% | |
| CCACATACGTCATAGAAGGC+TGG | - | chr7_4:4012704-4012723 | Msa1136060:CDS | 50.0% | |
| GTGGCTGGATGTAAACGAGA+TGG | - | chr7_4:4012744-4012763 | Msa1136060:CDS | 50.0% | |
| GTAAACGAGATGGATCGGGT+TGG | - | chr7_4:4012754-4012773 | Msa1136060:CDS | 50.0% | |
| ! | TAGCATCACCAGGAAGGTGT+TGG | - | chr7_4:4011933-4011952 | Msa1136060:CDS | 50.0% |
| !! | AGCATCACCAGGAAGGTGTT+GGG | - | chr7_4:4011934-4011953 | Msa1136060:CDS | 50.0% |
| TGGGCAGACAAAGAGCAATG+TGG | - | chr7_4:4011953-4011972 | Msa1136060:CDS | 50.0% | |
| ! | GGAGTACCTCATCTCGAGAA+AGG | - | chr7_4:4012120-4012139 | Msa1136060:CDS | 50.0% |
| GATGATGAGTGTGAGGGGAA+AGG | - | chr7_4:4012172-4012191 | Msa1136060:CDS | 50.0% | |
| AAGCTGCCAAAACATTCCCC+AGG | - | chr7_4:4012221-4012240 | Msa1136060:CDS | 50.0% | |
| GCCAAAACATTCCCCAGGTT+CGG | - | chr7_4:4012226-4012245 | Msa1136060:CDS | 50.0% | |
| AGCAATATCCCCGGTCATAG+GGG | + | chr7_4:4012342-4012361 | None:intergenic | 50.0% | |
| TGGGAAGCAATACTACGGGA+GGG | - | chr7_4:4012429-4012448 | Msa1136060:CDS | 50.0% | |
| AGGGGTCCGTTTCAGATCAA+AGG | - | chr7_4:4012448-4012467 | Msa1136060:CDS | 50.0% | |
| GGTCTGTGGCAATGAGATCT+GGG | + | chr7_4:4012528-4012547 | None:intergenic | 50.0% | |
| ACTTGGAAAGGGAAAGGTGG+AGG | + | chr7_4:4012595-4012614 | None:intergenic | 50.0% | |
| GTTAGTCAGAGGAGGTTTCC+AGG | - | chr7_4:4012670-4012689 | Msa1136060:CDS | 50.0% | |
| CAGAGGAGGTTTCCAGGATA+TGG | - | chr7_4:4012676-4012695 | Msa1136060:CDS | 50.0% | |
| CCAGCCTTCTATGACGTATG+TGG | + | chr7_4:4012707-4012726 | None:intergenic | 50.0% | |
| CCACATACGTCATAGAAGGC+TGG | - | chr7_4:4012704-4012723 | Msa1136060:CDS | 50.0% | |
| GTGGCTGGATGTAAACGAGA+TGG | - | chr7_4:4012744-4012763 | Msa1136060:CDS | 50.0% | |
| GTAAACGAGATGGATCGGGT+TGG | - | chr7_4:4012754-4012773 | Msa1136060:CDS | 50.0% | |
| TTGTCTGCCCAACACCTTCC+TGG | + | chr7_4:4011944-4011963 | None:intergenic | 55.0% | |
| ! | TGCAGTGCATGGGGCTTTTG+TGG | - | chr7_4:4012016-4012035 | Msa1136060:CDS | 55.0% |
| GGATCAACCGACCACTACTG+CGG | - | chr7_4:4012037-4012056 | Msa1136060:CDS | 55.0% | |
| !! | TACTCCTCCTCTGGAGTTGG+AGG | + | chr7_4:4012106-4012125 | None:intergenic | 55.0% |
| !! | AGGTACTCCTCCTCTGGAGT+TGG | + | chr7_4:4012109-4012128 | None:intergenic | 55.0% |
| ! | GAGATGAGGTACTCCTCCTC+TGG | + | chr7_4:4012115-4012134 | None:intergenic | 55.0% |
| TCGCGACGATGATGAGTGTG+AGG | - | chr7_4:4012165-4012184 | Msa1136060:CDS | 55.0% | |
| CGCGACGATGATGAGTGTGA+GGG | - | chr7_4:4012166-4012185 | Msa1136060:CDS | 55.0% | |
| GCGACGATGATGAGTGTGAG+GGG | - | chr7_4:4012167-4012186 | Msa1136060:CDS | 55.0% | |
| ! | GCCGAACCTGGGGAATGTTT+TGG | + | chr7_4:4012230-4012249 | None:intergenic | 55.0% |
| TCTCCTTCGTTGCCGAACCT+GGG | + | chr7_4:4012241-4012260 | None:intergenic | 55.0% | |
| CACCTCTTAGCCCCTATGAC+CGG | - | chr7_4:4012329-4012348 | Msa1136060:CDS | 55.0% | |
| ACCTCTTAGCCCCTATGACC+GGG | - | chr7_4:4012330-4012349 | Msa1136060:CDS | 55.0% | |
| CTCCCGTAGTATTGCTTCCC+AGG | + | chr7_4:4012430-4012449 | None:intergenic | 55.0% | |
| CTGGGAAGCAATACTACGGG+AGG | - | chr7_4:4012428-4012447 | Msa1136060:CDS | 55.0% | |
| GGGAAGCAATACTACGGGAG+GGG | - | chr7_4:4012430-4012449 | Msa1136060:CDS | 55.0% | |
| GGGTCTGTGGCAATGAGATC+TGG | + | chr7_4:4012529-4012548 | None:intergenic | 55.0% | |
| CTCGTTTACATCCAGCCACC+CGG | + | chr7_4:4012743-4012762 | None:intergenic | 55.0% | |
| TTGTCTGCCCAACACCTTCC+TGG | + | chr7_4:4011944-4011963 | None:intergenic | 55.0% | |
| ! | TGCAGTGCATGGGGCTTTTG+TGG | - | chr7_4:4012016-4012035 | Msa1136060:CDS | 55.0% |
| GGATCAACCGACCACTACTG+CGG | - | chr7_4:4012037-4012056 | Msa1136060:CDS | 55.0% | |
| !! | TACTCCTCCTCTGGAGTTGG+AGG | + | chr7_4:4012106-4012125 | None:intergenic | 55.0% |
| !! | AGGTACTCCTCCTCTGGAGT+TGG | + | chr7_4:4012109-4012128 | None:intergenic | 55.0% |
| ! | GAGATGAGGTACTCCTCCTC+TGG | + | chr7_4:4012115-4012134 | None:intergenic | 55.0% |
| TCGCGACGATGATGAGTGTG+AGG | - | chr7_4:4012165-4012184 | Msa1136060:CDS | 55.0% | |
| CGCGACGATGATGAGTGTGA+GGG | - | chr7_4:4012166-4012185 | Msa1136060:CDS | 55.0% | |
| GCGACGATGATGAGTGTGAG+GGG | - | chr7_4:4012167-4012186 | Msa1136060:CDS | 55.0% | |
| ! | GCCGAACCTGGGGAATGTTT+TGG | + | chr7_4:4012230-4012249 | None:intergenic | 55.0% |
| TCTCCTTCGTTGCCGAACCT+GGG | + | chr7_4:4012241-4012260 | None:intergenic | 55.0% | |
| CACCTCTTAGCCCCTATGAC+CGG | - | chr7_4:4012329-4012348 | Msa1136060:CDS | 55.0% | |
| ACCTCTTAGCCCCTATGACC+GGG | - | chr7_4:4012330-4012349 | Msa1136060:CDS | 55.0% | |
| CTCCCGTAGTATTGCTTCCC+AGG | + | chr7_4:4012430-4012449 | None:intergenic | 55.0% | |
| CTGGGAAGCAATACTACGGG+AGG | - | chr7_4:4012428-4012447 | Msa1136060:CDS | 55.0% | |
| GGGAAGCAATACTACGGGAG+GGG | - | chr7_4:4012430-4012449 | Msa1136060:CDS | 55.0% | |
| GGGTCTGTGGCAATGAGATC+TGG | + | chr7_4:4012529-4012548 | None:intergenic | 55.0% | |
| CTCGTTTACATCCAGCCACC+CGG | + | chr7_4:4012743-4012762 | None:intergenic | 55.0% | |
| AACCGACCACTACTGCGGCA+AGG | - | chr7_4:4012042-4012061 | Msa1136060:CDS | 60.0% | |
| ACCGACCACTACTGCGGCAA+GGG | - | chr7_4:4012043-4012062 | Msa1136060:CDS | 60.0% | |
| ACCCTTGCCGCAGTAGTGGT+CGG | + | chr7_4:4012047-4012066 | None:intergenic | 60.0% | |
| ! | TCTGGAGTTGGAGGAGGAGG+AGG | + | chr7_4:4012097-4012116 | None:intergenic | 60.0% |
| TCCTCCTCCTCCAACTCCAG+AGG | - | chr7_4:4012096-4012115 | Msa1136060:CDS | 60.0% | |
| !! | TCCTCTGGAGTTGGAGGAGG+AGG | + | chr7_4:4012100-4012119 | None:intergenic | 60.0% |
| TCCTCCTCCAACTCCAGAGG+AGG | - | chr7_4:4012099-4012118 | Msa1136060:CDS | 60.0% | |
| !! | TCCTCCTCTGGAGTTGGAGG+AGG | + | chr7_4:4012103-4012122 | None:intergenic | 60.0% |
| TTCCCCAGGTTCGGCAACGA+AGG | - | chr7_4:4012235-4012254 | Msa1136060:CDS | 60.0% | |
| CTCCTTCGTTGCCGAACCTG+GGG | + | chr7_4:4012240-4012259 | None:intergenic | 60.0% | |
| GTCTCCTTCGTTGCCGAACC+TGG | + | chr7_4:4012242-4012261 | None:intergenic | 60.0% | |
| CCTCTTAGCCCCTATGACCG+GGG | - | chr7_4:4012331-4012350 | Msa1136060:CDS | 60.0% | |
| AACCGACCACTACTGCGGCA+AGG | - | chr7_4:4012042-4012061 | Msa1136060:CDS | 60.0% | |
| ACCGACCACTACTGCGGCAA+GGG | - | chr7_4:4012043-4012062 | Msa1136060:CDS | 60.0% | |
| ACCCTTGCCGCAGTAGTGGT+CGG | + | chr7_4:4012047-4012066 | None:intergenic | 60.0% | |
| ! | TCTGGAGTTGGAGGAGGAGG+AGG | + | chr7_4:4012097-4012116 | None:intergenic | 60.0% |
| TCCTCCTCCTCCAACTCCAG+AGG | - | chr7_4:4012096-4012115 | Msa1136060:CDS | 60.0% | |
| !! | TCCTCTGGAGTTGGAGGAGG+AGG | + | chr7_4:4012100-4012119 | None:intergenic | 60.0% |
| TCCTCCTCCAACTCCAGAGG+AGG | - | chr7_4:4012099-4012118 | Msa1136060:CDS | 60.0% | |
| !! | TCCTCCTCTGGAGTTGGAGG+AGG | + | chr7_4:4012103-4012122 | None:intergenic | 60.0% |
| TTCCCCAGGTTCGGCAACGA+AGG | - | chr7_4:4012235-4012254 | Msa1136060:CDS | 60.0% | |
| CTCCTTCGTTGCCGAACCTG+GGG | + | chr7_4:4012240-4012259 | None:intergenic | 60.0% | |
| GTCTCCTTCGTTGCCGAACC+TGG | + | chr7_4:4012242-4012261 | None:intergenic | 60.0% | |
| CCTCTTAGCCCCTATGACCG+GGG | - | chr7_4:4012331-4012350 | Msa1136060:CDS | 60.0% | |
| GGCAACCCTTGCCGCAGTAG+TGG | + | chr7_4:4012051-4012070 | None:intergenic | 65.0% | |
| CCCCGGTCATAGGGGCTAAG+AGG | + | chr7_4:4012334-4012353 | None:intergenic | 65.0% | |
| GGCTGGAAGGAATGCGCGAC+CGG | - | chr7_4:4012721-4012740 | Msa1136060:CDS | 65.0% | |
| GCTGGAAGGAATGCGCGACC+GGG | - | chr7_4:4012722-4012741 | Msa1136060:CDS | 65.0% | |
| GGCAACCCTTGCCGCAGTAG+TGG | + | chr7_4:4012051-4012070 | None:intergenic | 65.0% | |
| CCCCGGTCATAGGGGCTAAG+AGG | + | chr7_4:4012334-4012353 | None:intergenic | 65.0% | |
| GGCTGGAAGGAATGCGCGAC+CGG | - | chr7_4:4012721-4012740 | Msa1136060:CDS | 65.0% | |
| GCTGGAAGGAATGCGCGACC+GGG | - | chr7_4:4012722-4012741 | Msa1136060:CDS | 65.0% | |
| GGAAGGAATGCGCGACCGGG+TGG | - | chr7_4:4012725-4012744 | Msa1136060:CDS | 70.0% | |
| GGAAGGAATGCGCGACCGGG+TGG | - | chr7_4:4012725-4012744 | Msa1136060:CDS | 70.0% | |
| GGAATGCGCGACCGGGTGGC+TGG | - | chr7_4:4012729-4012748 | Msa1136060:CDS | 75.0% | |
| GGAATGCGCGACCGGGTGGC+TGG | - | chr7_4:4012729-4012748 | Msa1136060:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 4011869 | 4012864 | 4011869 | ID=Msa1136060;Name=Msa1136060 |
| chr7_4 | mRNA | 4011869 | 4012864 | 4011869 | ID=Msa1136060-mRNA-1;Parent=Msa1136060;Name=Msa1136060-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|331 |
| chr7_4 | exon | 4011869 | 4012864 | 4011869 | ID=Msa1136060-mRNA-1:exon:1095;Parent=Msa1136060-mRNA-1 |
| chr7_4 | CDS | 4011869 | 4012864 | 4011869 | ID=Msa1136060-mRNA-1:cds;Parent=Msa1136060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
