AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1136060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136060 MtrunA17_Chr3g0145981 57.692 312 111 6 16 324 34 327 1.48e-120 350
Msa1136060 MtrunA17_Chr8g0370851 49.835 303 136 6 30 324 21 315 1.23e-98 294
Msa1136060 MtrunA17_Chr8g0370821 51.325 302 130 6 30 322 31 324 7.35e-97 290
Msa1136060 MtrunA17_Chr8g0370831 46.302 311 135 5 30 329 20 309 3.52e-87 264
Msa1136060 MtrunA17_Chr7g0270841 39.167 240 135 5 87 322 39 271 1.62e-58 189
Msa1136060 MtrunA17_Chr2g0329791 34.049 326 164 10 1 322 4 282 1.61e-51 172
Msa1136060 MtrunA17_Chr2g0329781 34.843 287 141 8 44 322 15 263 2.37e-49 166
Msa1136060 MtrunA17_Chr7g0221751 36.327 245 136 10 93 324 69 306 2.58e-39 141
Msa1136060 MtrunA17_Chr2g0294721 34.934 229 137 6 93 314 65 288 2.33e-38 138
Msa1136060 MtrunA17_Chr1g0206111 31.949 313 171 12 15 314 11 294 3.05e-38 138
Msa1136060 MtrunA17_Chr7g0274181 49.153 59 27 1 14 72 3 58 1.03e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136060 AT3G12500.1 54.333 300 126 5 33 328 34 326 3.06e-107 317
Msa1136060 AT4G01700.1 42.500 240 127 5 87 322 41 273 2.11e-63 202
Msa1136060 AT1G02360.1 40.496 242 133 5 85 322 31 265 8.29e-60 193
Msa1136060 AT1G02360.2 40.496 242 133 5 85 322 77 311 3.28e-59 193
Msa1136060 AT1G02360.3 40.496 242 133 5 85 322 83 317 4.79e-59 193
Msa1136060 AT3G54420.1 35.505 307 151 8 17 322 13 273 2.61e-54 179
Msa1136060 AT2G43590.1 34.164 281 138 9 44 322 29 264 9.77e-48 162
Msa1136060 AT2G43610.1 32.710 321 155 10 14 322 10 281 5.46e-47 160
Msa1136060 AT2G43620.1 34.000 300 139 11 37 322 29 283 1.67e-46 159
Msa1136060 AT2G43570.1 31.193 327 162 13 3 322 7 277 5.12e-44 152
Msa1136060 AT2G43580.1 31.071 280 149 5 44 322 29 265 1.19e-43 151
Msa1136060 AT3G16920.1 34.348 230 137 8 93 314 77 300 1.26e-37 137
Msa1136060 AT3G16920.2 34.348 230 137 8 93 314 101 324 1.87e-37 137
Msa1136060 AT1G05850.1 31.045 335 185 16 3 324 5 306 2.49e-37 136
Msa1136060 AT1G05850.2 31.045 335 185 16 3 324 5 306 2.49e-37 136
Msa1136060 AT2G43600.1 32.042 284 137 12 49 322 36 273 3.01e-35 129
Msa1136060 AT2G43600.2 32.042 284 137 12 49 322 57 294 5.84e-35 129
Msa1136060 AT1G56680.1 31.206 282 143 10 49 322 42 280 6.74e-33 123
Msa1136060 AT1G56680.2 31.206 282 143 10 49 322 65 303 1.20e-32 123
Msa1136060 AT3G47540.1 25.316 237 121 9 87 322 33 214 4.97e-16 76.3
Msa1136060 AT3G47540.2 24.576 236 122 9 87 321 33 213 2.86e-14 72.4

Find 113 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCCTTCGTTGCCGAACC+TGG 0.245191 7_4:+4012472 None:intergenic
CAGAGGAGGTTTCCAGGATA+TGG 0.257878 7_4:-4012035 Msa1136060:CDS
TTGTCTGCCCAACACCTTCC+TGG 0.285066 7_4:+4012770 None:intergenic
ATCAAAGGCAATAAAATATA+TGG 0.293433 7_4:-4012248 Msa1136060:CDS
TCTAAATTTCCATGTGTTCC+TGG 0.293914 7_4:-4012302 Msa1136060:CDS
GGAGAATGTGGAAGTATAAT+AGG 0.323922 7_4:-4012227 Msa1136060:CDS
GCCGAACCTGGGGAATGTTT+TGG 0.339992 7_4:+4012484 None:intergenic
TCTTGCCATGACGCTATAAC+TGG 0.341250 7_4:-4012089 Msa1136060:CDS
TTCACAAAGGATGGGGAGAT+TGG 0.341429 7_4:-4012852 None:intergenic
AAAGCAATATCCCCGGTCAT+AGG 0.342897 7_4:+4012370 None:intergenic
CATGGCAAGATGGCTTTACT+TGG 0.351502 7_4:+4012102 None:intergenic
GGGTCTGTGGCAATGAGATC+TGG 0.352495 7_4:+4012185 None:intergenic
GCACTCTTGAAGGATATAAC+AGG 0.377927 7_4:+4012164 None:intergenic
TCCTCTGGAGTTGGAGGAGG+AGG 0.393578 7_4:+4012614 None:intergenic
GTTAGTCAGAGGAGGTTTCC+AGG 0.398397 7_4:-4012041 Msa1136060:CDS
GGCTGGAAGGAATGCGCGAC+CGG 0.412108 7_4:-4011990 Msa1136060:CDS
GGAATGCGCGACCGGGTGGC+TGG 0.413441 7_4:-4011982 Msa1136060:CDS
TACTCCTCCTCTGGAGTTGG+AGG 0.424138 7_4:+4012608 None:intergenic
TCTGGAGTTGGAGGAGGAGG+AGG 0.434178 7_4:+4012617 None:intergenic
AAGCAATATCCCCGGTCATA+GGG 0.440767 7_4:+4012371 None:intergenic
ATACCATATAGCACTCTTGA+AGG 0.443225 7_4:+4012154 None:intergenic
TCTCCTTCGTTGCCGAACCT+GGG 0.454761 7_4:+4012473 None:intergenic
GCCAAAACATTCCCCAGGTT+CGG 0.455985 7_4:-4012485 Msa1136060:CDS
ATGAGATATTGTGACATACT+TGG 0.456754 7_4:-4011927 Msa1136060:CDS
AAGAAAATTCAAAACATTCA+AGG 0.456837 7_4:+4011886 None:intergenic
TCACAAAGGATGGGGAGATT+GGG 0.457705 7_4:-4012851 None:intergenic
CTAAATTTCCATGTGTTCCT+GGG 0.462737 7_4:-4012301 Msa1136060:CDS
ACACATGGAAATTTAGAGCT+TGG 0.463623 7_4:+4012308 None:intergenic
TCCTCCTCTGGAGTTGGAGG+AGG 0.463847 7_4:+4012611 None:intergenic
CACCTCTTAGCCCCTATGAC+CGG 0.464103 7_4:-4012382 Msa1136060:CDS
TCAAGAGTGCTATATGGTAT+TGG 0.468474 7_4:-4012151 Msa1136060:CDS
TTCGCAGTAGTCTTCTTCGA+TGG 0.468797 7_4:+4012331 None:intergenic
TATCCTTCAAGAGTGCTATA+TGG 0.471202 7_4:-4012157 Msa1136060:CDS
ACCTCTTAGCCCCTATGACC+GGG 0.474353 7_4:-4012381 Msa1136060:CDS
CAAGATGGCTTTACTTGGAA+AGG 0.478902 7_4:+4012107 None:intergenic
TTATTGCCTTTGATCTGAAA+CGG 0.479679 7_4:+4012257 None:intergenic
TGACTAACATCAAAATCAGT+AGG 0.481832 7_4:+4012056 None:intergenic
CTCCCGTAGTATTGCTTCCC+AGG 0.483969 7_4:+4012284 None:intergenic
ATGAATTATGCTGCAGTGCA+TGG 0.488295 7_4:-4012706 Msa1136060:CDS
AGCATCACCAGGAAGGTGTT+GGG 0.489004 7_4:-4012777 Msa1136060:CDS
TCGCAGTAGTCTTCTTCGAT+GGG 0.491948 7_4:+4012332 None:intergenic
CCCCGGTCATAGGGGCTAAG+AGG 0.498386 7_4:+4012380 None:intergenic
AGAGGAGGTTTCCAGGATAT+GGG 0.498919 7_4:-4012034 Msa1136060:CDS
AAGATGGCTTTACTTGGAAA+GGG 0.503243 7_4:+4012108 None:intergenic
ATGACCACATACGTCATAGA+AGG 0.503651 7_4:-4012011 Msa1136060:CDS
GAGCAATGTGGAAAACAAGC+TGG 0.504321 7_4:-4012746 Msa1136060:CDS
AGGTACTCCTCCTCTGGAGT+TGG 0.506666 7_4:+4012605 None:intergenic
TAGCATCACCAGGAAGGTGT+TGG 0.507093 7_4:-4012778 Msa1136060:CDS
GAGATGAGGTACTCCTCCTC+TGG 0.514140 7_4:+4012599 None:intergenic
TATGTGGTCATCCCATATCC+TGG 0.517764 7_4:+4012023 None:intergenic
GGATGTAAACGAGATGGATC+GGG 0.521846 7_4:-4011961 Msa1136060:CDS
TGAATTATGCTGCAGTGCAT+GGG 0.527534 7_4:-4012705 Msa1136060:CDS
GGCAACCCTTGCCGCAGTAG+TGG 0.533175 7_4:+4012663 None:intergenic
GGAGTACCTCATCTCGAGAA+AGG 0.538404 7_4:-4012591 Msa1136060:CDS
GGCTTTACTTGGAAAGGGAA+AGG 0.540330 7_4:+4012113 None:intergenic
ACCGACCACTACTGCGGCAA+GGG 0.546092 7_4:-4012668 Msa1136060:CDS
GGTCTGTGGCAATGAGATCT+GGG 0.547304 7_4:+4012186 None:intergenic
TAGTTCCATTACATTGACTC+TGG 0.548638 7_4:+4012642 None:intergenic
TGGATGTAAACGAGATGGAT+CGG 0.553901 7_4:-4011962 Msa1136060:CDS
ACTTGGAAAGGGAAAGGTGG+AGG 0.555116 7_4:+4012119 None:intergenic
AGCAATGTGGAAAACAAGCT+GGG 0.556737 7_4:-4012745 Msa1136060:CDS
AATAAAATATATGGAGAATG+TGG 0.556765 7_4:-4012239 Msa1136060:CDS
GACATACTTGGAGTTCGATA+CGG 0.558585 7_4:-4011915 Msa1136060:CDS
AAGCTGCCAAAACATTCCCC+AGG 0.566465 7_4:-4012490 Msa1136060:CDS
ACCCTTGCCGCAGTAGTGGT+CGG 0.568655 7_4:+4012667 None:intergenic
TCCTCCTCCAACTCCAGAGG+AGG 0.569915 7_4:-4012612 Msa1136060:CDS
GAAACTGGAATATTACACTT+CGG 0.571315 7_4:+4012828 None:intergenic
CTCGTTTACATCCAGCCACC+CGG 0.571779 7_4:+4011971 None:intergenic
GATGATGAGTGTGAGGGGAA+AGG 0.572756 7_4:-4012539 Msa1136060:CDS
GCTGGAAGGAATGCGCGACC+GGG 0.573064 7_4:-4011989 Msa1136060:CDS
AGCTCTCACAAAACAAGAGG+TGG 0.574719 7_4:-4012407 Msa1136060:CDS
GGAAGGAATGCGCGACCGGG+TGG 0.575460 7_4:-4011986 Msa1136060:CDS
CTCCTTCGTTGCCGAACCTG+GGG 0.576604 7_4:+4012474 None:intergenic
GACTAACATCAAAATCAGTA+GGG 0.576729 7_4:+4012057 None:intergenic
AGGGGTCCGTTTCAGATCAA+AGG 0.577126 7_4:-4012263 Msa1136060:CDS
TCCTCCTCCTCCAACTCCAG+AGG 0.577892 7_4:-4012615 Msa1136060:CDS
GGTTGCCAGAGTCAATGTAA+TGG 0.579858 7_4:-4012647 Msa1136060:CDS
TATTGCTTCCCAGGAACACA+TGG 0.580157 7_4:+4012293 None:intergenic
CCACATACGTCATAGAAGGC+TGG 0.581811 7_4:-4012007 Msa1136060:CDS
GTTATAGCGTCATGGCAAGA+TGG 0.583768 7_4:+4012092 None:intergenic
TTCCTGGGAAGCAATACTAC+GGG 0.585236 7_4:-4012286 Msa1136060:CDS
TTCCCCAGGTTCGGCAACGA+AGG 0.585501 7_4:-4012476 Msa1136060:CDS
GTTCCTGGGAAGCAATACTA+CGG 0.592317 7_4:-4012287 Msa1136060:CDS
AACCGACCACTACTGCGGCA+AGG 0.593325 7_4:-4012669 Msa1136060:CDS
GTGGCTGGATGTAAACGAGA+TGG 0.595690 7_4:-4011967 Msa1136060:CDS
CCAGCCTTCTATGACGTATG+TGG 0.595690 7_4:+4012007 None:intergenic
TGAAATCCTTTCTCGAGATG+AGG 0.601183 7_4:+4012585 None:intergenic
CACTCTTGAAGGATATAACA+GGG 0.603547 7_4:+4012165 None:intergenic
CATTCATAAAGCAATATCCC+CGG 0.604590 7_4:+4012363 None:intergenic
AGGCAGACCGGATCAAGAGA+TGG 0.605959 7_4:+4011857 None:intergenic
ATCGTCCAGTTATAGCGTCA+TGG 0.607533 7_4:+4012084 None:intergenic
CGCGACGATGATGAGTGTGA+GGG 0.608511 7_4:-4012545 Msa1136060:CDS
CTACTAATTATAGCATCACC+AGG 0.609536 7_4:-4012788 Msa1136060:CDS
CTGGGAAGCAATACTACGGG+AGG 0.613705 7_4:-4012283 Msa1136060:CDS
TCGCGACGATGATGAGTGTG+AGG 0.615130 7_4:-4012546 Msa1136060:CDS
AGCAATATCCCCGGTCATAG+GGG 0.615444 7_4:+4012372 None:intergenic
GAAGGATATAACAGGGTCTG+TGG 0.619235 7_4:+4012172 None:intergenic
CCTCTTAGCCCCTATGACCG+GGG 0.619811 7_4:-4012380 Msa1136060:CDS
TGGGAAGCAATACTACGGGA+GGG 0.621104 7_4:-4012282 Msa1136060:CDS
GGGAAGCAATACTACGGGAG+GGG 0.628496 7_4:-4012281 Msa1136060:CDS
CAAAGCTCTCACAAAACAAG+AGG 0.630156 7_4:-4012410 Msa1136060:CDS
TAATTATAGCATCACCAGGA+AGG 0.639520 7_4:-4012784 Msa1136060:CDS
GTAAACGAGATGGATCGGGT+TGG 0.643330 7_4:-4011957 Msa1136060:CDS
TTTACTTGGAAAGGGAAAGG+TGG 0.645661 7_4:+4012116 None:intergenic
GCAATGTGGAAAACAAGCTG+GGG 0.650439 7_4:-4012744 Msa1136060:CDS
ATACGTCATAGAAGGCTGGA+AGG 0.655440 7_4:-4012003 Msa1136060:CDS
AGCTTCAACAAATCCTTCGT+AGG 0.660013 7_4:+4012508 None:intergenic
GAATTATGCTGCAGTGCATG+GGG 0.669091 7_4:-4012704 Msa1136060:CDS
GCGACGATGATGAGTGTGAG+GGG 0.672599 7_4:-4012544 Msa1136060:CDS
ATGACGCTATAACTGGACGA+TGG 0.672926 7_4:-4012082 Msa1136060:CDS
GGATCAACCGACCACTACTG+CGG 0.690258 7_4:-4012674 Msa1136060:CDS
CAATGTGGAAAACAAGCTGG+GGG 0.710643 7_4:-4012743 Msa1136060:CDS
TGGGCAGACAAAGAGCAATG+TGG 0.733933 7_4:-4012758 Msa1136060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAGGCAATAAAATATA+TGG - chr7_4:4012463-4012482 Msa1136060:CDS 20.0%
!! AATAAAATATATGGAGAATG+TGG - chr7_4:4012472-4012491 Msa1136060:CDS 20.0%
!! AAGAAAATTCAAAACATTCA+AGG + chr7_4:4012828-4012847 None:intergenic 20.0%
!! ATCAAAGGCAATAAAATATA+TGG - chr7_4:4012463-4012482 Msa1136060:CDS 20.0%
!! AATAAAATATATGGAGAATG+TGG - chr7_4:4012472-4012491 Msa1136060:CDS 20.0%
!! AAGAAAATTCAAAACATTCA+AGG + chr7_4:4012828-4012847 None:intergenic 20.0%
!!! AGTAGTACTATTGCTATTTT+TGG + chr7_4:4011908-4011927 None:intergenic 25.0%
!!! AGTAGTACTATTGCTATTTT+TGG + chr7_4:4011908-4011927 None:intergenic 25.0%
GAAACTGGAATATTACACTT+CGG + chr7_4:4011886-4011905 None:intergenic 30.0%
!!! CTATTGCTATTTTTGGAAAC+TGG + chr7_4:4011901-4011920 None:intergenic 30.0%
TTATTGCCTTTGATCTGAAA+CGG + chr7_4:4012457-4012476 None:intergenic 30.0%
GACTAACATCAAAATCAGTA+GGG + chr7_4:4012657-4012676 None:intergenic 30.0%
TGACTAACATCAAAATCAGT+AGG + chr7_4:4012658-4012677 None:intergenic 30.0%
ATGAGATATTGTGACATACT+TGG - chr7_4:4012784-4012803 Msa1136060:CDS 30.0%
GAAACTGGAATATTACACTT+CGG + chr7_4:4011886-4011905 None:intergenic 30.0%
!!! CTATTGCTATTTTTGGAAAC+TGG + chr7_4:4011901-4011920 None:intergenic 30.0%
TTATTGCCTTTGATCTGAAA+CGG + chr7_4:4012457-4012476 None:intergenic 30.0%
GACTAACATCAAAATCAGTA+GGG + chr7_4:4012657-4012676 None:intergenic 30.0%
TGACTAACATCAAAATCAGT+AGG + chr7_4:4012658-4012677 None:intergenic 30.0%
ATGAGATATTGTGACATACT+TGG - chr7_4:4012784-4012803 Msa1136060:CDS 30.0%
CTACTAATTATAGCATCACC+AGG - chr7_4:4011923-4011942 Msa1136060:CDS 35.0%
TAATTATAGCATCACCAGGA+AGG - chr7_4:4011927-4011946 Msa1136060:CDS 35.0%
!! TAGTTCCATTACATTGACTC+TGG + chr7_4:4012072-4012091 None:intergenic 35.0%
! AAAGGATTTTACACCTACGA+AGG - chr7_4:4012190-4012209 Msa1136060:CDS 35.0%
!!! AGAGACATTGCTGCTTTTTT+TGG - chr7_4:4012277-4012296 Msa1136060:CDS 35.0%
CATTCATAAAGCAATATCCC+CGG + chr7_4:4012351-4012370 None:intergenic 35.0%
! ACACATGGAAATTTAGAGCT+TGG + chr7_4:4012406-4012425 None:intergenic 35.0%
TCTAAATTTCCATGTGTTCC+TGG - chr7_4:4012409-4012428 Msa1136060:CDS 35.0%
CTAAATTTCCATGTGTTCCT+GGG - chr7_4:4012410-4012429 Msa1136060:CDS 35.0%
! GGAGAATGTGGAAGTATAAT+AGG - chr7_4:4012484-4012503 Msa1136060:CDS 35.0%
CACTCTTGAAGGATATAACA+GGG + chr7_4:4012549-4012568 None:intergenic 35.0%
!! TATCCTTCAAGAGTGCTATA+TGG - chr7_4:4012554-4012573 Msa1136060:CDS 35.0%
ATACCATATAGCACTCTTGA+AGG + chr7_4:4012560-4012579 None:intergenic 35.0%
!! TCAAGAGTGCTATATGGTAT+TGG - chr7_4:4012560-4012579 Msa1136060:CDS 35.0%
! AAGATGGCTTTACTTGGAAA+GGG + chr7_4:4012606-4012625 None:intergenic 35.0%
!! CTGATTTTGATGTTAGTCAG+AGG - chr7_4:4012659-4012678 Msa1136060:CDS 35.0%
!! ATTTTGATGTTAGTCAGAGG+AGG - chr7_4:4012662-4012681 Msa1136060:CDS 35.0%
CTACTAATTATAGCATCACC+AGG - chr7_4:4011923-4011942 Msa1136060:CDS 35.0%
TAATTATAGCATCACCAGGA+AGG - chr7_4:4011927-4011946 Msa1136060:CDS 35.0%
!! TAGTTCCATTACATTGACTC+TGG + chr7_4:4012072-4012091 None:intergenic 35.0%
! AAAGGATTTTACACCTACGA+AGG - chr7_4:4012190-4012209 Msa1136060:CDS 35.0%
!!! AGAGACATTGCTGCTTTTTT+TGG - chr7_4:4012277-4012296 Msa1136060:CDS 35.0%
CATTCATAAAGCAATATCCC+CGG + chr7_4:4012351-4012370 None:intergenic 35.0%
! ACACATGGAAATTTAGAGCT+TGG + chr7_4:4012406-4012425 None:intergenic 35.0%
TCTAAATTTCCATGTGTTCC+TGG - chr7_4:4012409-4012428 Msa1136060:CDS 35.0%
CTAAATTTCCATGTGTTCCT+GGG - chr7_4:4012410-4012429 Msa1136060:CDS 35.0%
! GGAGAATGTGGAAGTATAAT+AGG - chr7_4:4012484-4012503 Msa1136060:CDS 35.0%
CACTCTTGAAGGATATAACA+GGG + chr7_4:4012549-4012568 None:intergenic 35.0%
!! TATCCTTCAAGAGTGCTATA+TGG - chr7_4:4012554-4012573 Msa1136060:CDS 35.0%
ATACCATATAGCACTCTTGA+AGG + chr7_4:4012560-4012579 None:intergenic 35.0%
!! TCAAGAGTGCTATATGGTAT+TGG - chr7_4:4012560-4012579 Msa1136060:CDS 35.0%
! AAGATGGCTTTACTTGGAAA+GGG + chr7_4:4012606-4012625 None:intergenic 35.0%
!! CTGATTTTGATGTTAGTCAG+AGG - chr7_4:4012659-4012678 Msa1136060:CDS 35.0%
!! ATTTTGATGTTAGTCAGAGG+AGG - chr7_4:4012662-4012681 Msa1136060:CDS 35.0%
AGCAATGTGGAAAACAAGCT+GGG - chr7_4:4011966-4011985 Msa1136060:CDS 40.0%
ATGAATTATGCTGCAGTGCA+TGG - chr7_4:4012005-4012024 Msa1136060:CDS 40.0%
TGAATTATGCTGCAGTGCAT+GGG - chr7_4:4012006-4012025 Msa1136060:CDS 40.0%
TGAAATCCTTTCTCGAGATG+AGG + chr7_4:4012129-4012148 None:intergenic 40.0%
AGCTTCAACAAATCCTTCGT+AGG + chr7_4:4012206-4012225 None:intergenic 40.0%
CAAAGCTCTCACAAAACAAG+AGG - chr7_4:4012301-4012320 Msa1136060:CDS 40.0%
GCACTCTTGAAGGATATAAC+AGG + chr7_4:4012550-4012569 None:intergenic 40.0%
TTTACTTGGAAAGGGAAAGG+TGG + chr7_4:4012598-4012617 None:intergenic 40.0%
! CAAGATGGCTTTACTTGGAA+AGG + chr7_4:4012607-4012626 None:intergenic 40.0%
ATGACCACATACGTCATAGA+AGG - chr7_4:4012700-4012719 Msa1136060:CDS 40.0%
TGGATGTAAACGAGATGGAT+CGG - chr7_4:4012749-4012768 Msa1136060:CDS 40.0%
GACATACTTGGAGTTCGATA+CGG - chr7_4:4012796-4012815 Msa1136060:CDS 40.0%
AGCAATGTGGAAAACAAGCT+GGG - chr7_4:4011966-4011985 Msa1136060:CDS 40.0%
ATGAATTATGCTGCAGTGCA+TGG - chr7_4:4012005-4012024 Msa1136060:CDS 40.0%
TGAATTATGCTGCAGTGCAT+GGG - chr7_4:4012006-4012025 Msa1136060:CDS 40.0%
TGAAATCCTTTCTCGAGATG+AGG + chr7_4:4012129-4012148 None:intergenic 40.0%
AGCTTCAACAAATCCTTCGT+AGG + chr7_4:4012206-4012225 None:intergenic 40.0%
CAAAGCTCTCACAAAACAAG+AGG - chr7_4:4012301-4012320 Msa1136060:CDS 40.0%
GCACTCTTGAAGGATATAAC+AGG + chr7_4:4012550-4012569 None:intergenic 40.0%
TTTACTTGGAAAGGGAAAGG+TGG + chr7_4:4012598-4012617 None:intergenic 40.0%
! CAAGATGGCTTTACTTGGAA+AGG + chr7_4:4012607-4012626 None:intergenic 40.0%
ATGACCACATACGTCATAGA+AGG - chr7_4:4012700-4012719 Msa1136060:CDS 40.0%
TGGATGTAAACGAGATGGAT+CGG - chr7_4:4012749-4012768 Msa1136060:CDS 40.0%
GACATACTTGGAGTTCGATA+CGG - chr7_4:4012796-4012815 Msa1136060:CDS 40.0%
GAGCAATGTGGAAAACAAGC+TGG - chr7_4:4011965-4011984 Msa1136060:CDS 45.0%
GCAATGTGGAAAACAAGCTG+GGG - chr7_4:4011967-4011986 Msa1136060:CDS 45.0%
CAATGTGGAAAACAAGCTGG+GGG - chr7_4:4011968-4011987 Msa1136060:CDS 45.0%
GAATTATGCTGCAGTGCATG+GGG - chr7_4:4012007-4012026 Msa1136060:CDS 45.0%
GGTTGCCAGAGTCAATGTAA+TGG - chr7_4:4012064-4012083 Msa1136060:CDS 45.0%
AGCTCTCACAAAACAAGAGG+TGG - chr7_4:4012304-4012323 Msa1136060:CDS 45.0%
AAGCAATATCCCCGGTCATA+GGG + chr7_4:4012343-4012362 None:intergenic 45.0%
AAAGCAATATCCCCGGTCAT+AGG + chr7_4:4012344-4012363 None:intergenic 45.0%
TCGCAGTAGTCTTCTTCGAT+GGG + chr7_4:4012382-4012401 None:intergenic 45.0%
TTCGCAGTAGTCTTCTTCGA+TGG + chr7_4:4012383-4012402 None:intergenic 45.0%
TATTGCTTCCCAGGAACACA+TGG + chr7_4:4012421-4012440 None:intergenic 45.0%
GTTCCTGGGAAGCAATACTA+CGG - chr7_4:4012424-4012443 Msa1136060:CDS 45.0%
TTCCTGGGAAGCAATACTAC+GGG - chr7_4:4012425-4012444 Msa1136060:CDS 45.0%
GAAGGATATAACAGGGTCTG+TGG + chr7_4:4012542-4012561 None:intergenic 45.0%
GGCTTTACTTGGAAAGGGAA+AGG + chr7_4:4012601-4012620 None:intergenic 45.0%
! CATGGCAAGATGGCTTTACT+TGG + chr7_4:4012612-4012631 None:intergenic 45.0%
GTTATAGCGTCATGGCAAGA+TGG + chr7_4:4012622-4012641 None:intergenic 45.0%
TCTTGCCATGACGCTATAAC+TGG - chr7_4:4012622-4012641 Msa1136060:CDS 45.0%
ATCGTCCAGTTATAGCGTCA+TGG + chr7_4:4012630-4012649 None:intergenic 45.0%
ATGACGCTATAACTGGACGA+TGG - chr7_4:4012629-4012648 Msa1136060:CDS 45.0%
AGAGGAGGTTTCCAGGATAT+GGG - chr7_4:4012677-4012696 Msa1136060:CDS 45.0%
TATGTGGTCATCCCATATCC+TGG + chr7_4:4012691-4012710 None:intergenic 45.0%
ATACGTCATAGAAGGCTGGA+AGG - chr7_4:4012708-4012727 Msa1136060:CDS 45.0%
GGATGTAAACGAGATGGATC+GGG - chr7_4:4012750-4012769 Msa1136060:CDS 45.0%
GAGCAATGTGGAAAACAAGC+TGG - chr7_4:4011965-4011984 Msa1136060:CDS 45.0%
GCAATGTGGAAAACAAGCTG+GGG - chr7_4:4011967-4011986 Msa1136060:CDS 45.0%
CAATGTGGAAAACAAGCTGG+GGG - chr7_4:4011968-4011987 Msa1136060:CDS 45.0%
GAATTATGCTGCAGTGCATG+GGG - chr7_4:4012007-4012026 Msa1136060:CDS 45.0%
GGTTGCCAGAGTCAATGTAA+TGG - chr7_4:4012064-4012083 Msa1136060:CDS 45.0%
AGCTCTCACAAAACAAGAGG+TGG - chr7_4:4012304-4012323 Msa1136060:CDS 45.0%
AAGCAATATCCCCGGTCATA+GGG + chr7_4:4012343-4012362 None:intergenic 45.0%
AAAGCAATATCCCCGGTCAT+AGG + chr7_4:4012344-4012363 None:intergenic 45.0%
TCGCAGTAGTCTTCTTCGAT+GGG + chr7_4:4012382-4012401 None:intergenic 45.0%
TTCGCAGTAGTCTTCTTCGA+TGG + chr7_4:4012383-4012402 None:intergenic 45.0%
TATTGCTTCCCAGGAACACA+TGG + chr7_4:4012421-4012440 None:intergenic 45.0%
GTTCCTGGGAAGCAATACTA+CGG - chr7_4:4012424-4012443 Msa1136060:CDS 45.0%
TTCCTGGGAAGCAATACTAC+GGG - chr7_4:4012425-4012444 Msa1136060:CDS 45.0%
GAAGGATATAACAGGGTCTG+TGG + chr7_4:4012542-4012561 None:intergenic 45.0%
GGCTTTACTTGGAAAGGGAA+AGG + chr7_4:4012601-4012620 None:intergenic 45.0%
! CATGGCAAGATGGCTTTACT+TGG + chr7_4:4012612-4012631 None:intergenic 45.0%
GTTATAGCGTCATGGCAAGA+TGG + chr7_4:4012622-4012641 None:intergenic 45.0%
TCTTGCCATGACGCTATAAC+TGG - chr7_4:4012622-4012641 Msa1136060:CDS 45.0%
ATCGTCCAGTTATAGCGTCA+TGG + chr7_4:4012630-4012649 None:intergenic 45.0%
ATGACGCTATAACTGGACGA+TGG - chr7_4:4012629-4012648 Msa1136060:CDS 45.0%
AGAGGAGGTTTCCAGGATAT+GGG - chr7_4:4012677-4012696 Msa1136060:CDS 45.0%
TATGTGGTCATCCCATATCC+TGG + chr7_4:4012691-4012710 None:intergenic 45.0%
ATACGTCATAGAAGGCTGGA+AGG - chr7_4:4012708-4012727 Msa1136060:CDS 45.0%
GGATGTAAACGAGATGGATC+GGG - chr7_4:4012750-4012769 Msa1136060:CDS 45.0%
! TAGCATCACCAGGAAGGTGT+TGG - chr7_4:4011933-4011952 Msa1136060:CDS 50.0%
!! AGCATCACCAGGAAGGTGTT+GGG - chr7_4:4011934-4011953 Msa1136060:CDS 50.0%
TGGGCAGACAAAGAGCAATG+TGG - chr7_4:4011953-4011972 Msa1136060:CDS 50.0%
! GGAGTACCTCATCTCGAGAA+AGG - chr7_4:4012120-4012139 Msa1136060:CDS 50.0%
GATGATGAGTGTGAGGGGAA+AGG - chr7_4:4012172-4012191 Msa1136060:CDS 50.0%
AAGCTGCCAAAACATTCCCC+AGG - chr7_4:4012221-4012240 Msa1136060:CDS 50.0%
GCCAAAACATTCCCCAGGTT+CGG - chr7_4:4012226-4012245 Msa1136060:CDS 50.0%
AGCAATATCCCCGGTCATAG+GGG + chr7_4:4012342-4012361 None:intergenic 50.0%
TGGGAAGCAATACTACGGGA+GGG - chr7_4:4012429-4012448 Msa1136060:CDS 50.0%
AGGGGTCCGTTTCAGATCAA+AGG - chr7_4:4012448-4012467 Msa1136060:CDS 50.0%
GGTCTGTGGCAATGAGATCT+GGG + chr7_4:4012528-4012547 None:intergenic 50.0%
ACTTGGAAAGGGAAAGGTGG+AGG + chr7_4:4012595-4012614 None:intergenic 50.0%
GTTAGTCAGAGGAGGTTTCC+AGG - chr7_4:4012670-4012689 Msa1136060:CDS 50.0%
CAGAGGAGGTTTCCAGGATA+TGG - chr7_4:4012676-4012695 Msa1136060:CDS 50.0%
CCAGCCTTCTATGACGTATG+TGG + chr7_4:4012707-4012726 None:intergenic 50.0%
CCACATACGTCATAGAAGGC+TGG - chr7_4:4012704-4012723 Msa1136060:CDS 50.0%
GTGGCTGGATGTAAACGAGA+TGG - chr7_4:4012744-4012763 Msa1136060:CDS 50.0%
GTAAACGAGATGGATCGGGT+TGG - chr7_4:4012754-4012773 Msa1136060:CDS 50.0%
! TAGCATCACCAGGAAGGTGT+TGG - chr7_4:4011933-4011952 Msa1136060:CDS 50.0%
!! AGCATCACCAGGAAGGTGTT+GGG - chr7_4:4011934-4011953 Msa1136060:CDS 50.0%
TGGGCAGACAAAGAGCAATG+TGG - chr7_4:4011953-4011972 Msa1136060:CDS 50.0%
! GGAGTACCTCATCTCGAGAA+AGG - chr7_4:4012120-4012139 Msa1136060:CDS 50.0%
GATGATGAGTGTGAGGGGAA+AGG - chr7_4:4012172-4012191 Msa1136060:CDS 50.0%
AAGCTGCCAAAACATTCCCC+AGG - chr7_4:4012221-4012240 Msa1136060:CDS 50.0%
GCCAAAACATTCCCCAGGTT+CGG - chr7_4:4012226-4012245 Msa1136060:CDS 50.0%
AGCAATATCCCCGGTCATAG+GGG + chr7_4:4012342-4012361 None:intergenic 50.0%
TGGGAAGCAATACTACGGGA+GGG - chr7_4:4012429-4012448 Msa1136060:CDS 50.0%
AGGGGTCCGTTTCAGATCAA+AGG - chr7_4:4012448-4012467 Msa1136060:CDS 50.0%
GGTCTGTGGCAATGAGATCT+GGG + chr7_4:4012528-4012547 None:intergenic 50.0%
ACTTGGAAAGGGAAAGGTGG+AGG + chr7_4:4012595-4012614 None:intergenic 50.0%
GTTAGTCAGAGGAGGTTTCC+AGG - chr7_4:4012670-4012689 Msa1136060:CDS 50.0%
CAGAGGAGGTTTCCAGGATA+TGG - chr7_4:4012676-4012695 Msa1136060:CDS 50.0%
CCAGCCTTCTATGACGTATG+TGG + chr7_4:4012707-4012726 None:intergenic 50.0%
CCACATACGTCATAGAAGGC+TGG - chr7_4:4012704-4012723 Msa1136060:CDS 50.0%
GTGGCTGGATGTAAACGAGA+TGG - chr7_4:4012744-4012763 Msa1136060:CDS 50.0%
GTAAACGAGATGGATCGGGT+TGG - chr7_4:4012754-4012773 Msa1136060:CDS 50.0%
TTGTCTGCCCAACACCTTCC+TGG + chr7_4:4011944-4011963 None:intergenic 55.0%
! TGCAGTGCATGGGGCTTTTG+TGG - chr7_4:4012016-4012035 Msa1136060:CDS 55.0%
GGATCAACCGACCACTACTG+CGG - chr7_4:4012037-4012056 Msa1136060:CDS 55.0%
!! TACTCCTCCTCTGGAGTTGG+AGG + chr7_4:4012106-4012125 None:intergenic 55.0%
!! AGGTACTCCTCCTCTGGAGT+TGG + chr7_4:4012109-4012128 None:intergenic 55.0%
! GAGATGAGGTACTCCTCCTC+TGG + chr7_4:4012115-4012134 None:intergenic 55.0%
TCGCGACGATGATGAGTGTG+AGG - chr7_4:4012165-4012184 Msa1136060:CDS 55.0%
CGCGACGATGATGAGTGTGA+GGG - chr7_4:4012166-4012185 Msa1136060:CDS 55.0%
GCGACGATGATGAGTGTGAG+GGG - chr7_4:4012167-4012186 Msa1136060:CDS 55.0%
! GCCGAACCTGGGGAATGTTT+TGG + chr7_4:4012230-4012249 None:intergenic 55.0%
TCTCCTTCGTTGCCGAACCT+GGG + chr7_4:4012241-4012260 None:intergenic 55.0%
CACCTCTTAGCCCCTATGAC+CGG - chr7_4:4012329-4012348 Msa1136060:CDS 55.0%
ACCTCTTAGCCCCTATGACC+GGG - chr7_4:4012330-4012349 Msa1136060:CDS 55.0%
CTCCCGTAGTATTGCTTCCC+AGG + chr7_4:4012430-4012449 None:intergenic 55.0%
CTGGGAAGCAATACTACGGG+AGG - chr7_4:4012428-4012447 Msa1136060:CDS 55.0%
GGGAAGCAATACTACGGGAG+GGG - chr7_4:4012430-4012449 Msa1136060:CDS 55.0%
GGGTCTGTGGCAATGAGATC+TGG + chr7_4:4012529-4012548 None:intergenic 55.0%
CTCGTTTACATCCAGCCACC+CGG + chr7_4:4012743-4012762 None:intergenic 55.0%
TTGTCTGCCCAACACCTTCC+TGG + chr7_4:4011944-4011963 None:intergenic 55.0%
! TGCAGTGCATGGGGCTTTTG+TGG - chr7_4:4012016-4012035 Msa1136060:CDS 55.0%
GGATCAACCGACCACTACTG+CGG - chr7_4:4012037-4012056 Msa1136060:CDS 55.0%
!! TACTCCTCCTCTGGAGTTGG+AGG + chr7_4:4012106-4012125 None:intergenic 55.0%
!! AGGTACTCCTCCTCTGGAGT+TGG + chr7_4:4012109-4012128 None:intergenic 55.0%
! GAGATGAGGTACTCCTCCTC+TGG + chr7_4:4012115-4012134 None:intergenic 55.0%
TCGCGACGATGATGAGTGTG+AGG - chr7_4:4012165-4012184 Msa1136060:CDS 55.0%
CGCGACGATGATGAGTGTGA+GGG - chr7_4:4012166-4012185 Msa1136060:CDS 55.0%
GCGACGATGATGAGTGTGAG+GGG - chr7_4:4012167-4012186 Msa1136060:CDS 55.0%
! GCCGAACCTGGGGAATGTTT+TGG + chr7_4:4012230-4012249 None:intergenic 55.0%
TCTCCTTCGTTGCCGAACCT+GGG + chr7_4:4012241-4012260 None:intergenic 55.0%
CACCTCTTAGCCCCTATGAC+CGG - chr7_4:4012329-4012348 Msa1136060:CDS 55.0%
ACCTCTTAGCCCCTATGACC+GGG - chr7_4:4012330-4012349 Msa1136060:CDS 55.0%
CTCCCGTAGTATTGCTTCCC+AGG + chr7_4:4012430-4012449 None:intergenic 55.0%
CTGGGAAGCAATACTACGGG+AGG - chr7_4:4012428-4012447 Msa1136060:CDS 55.0%
GGGAAGCAATACTACGGGAG+GGG - chr7_4:4012430-4012449 Msa1136060:CDS 55.0%
GGGTCTGTGGCAATGAGATC+TGG + chr7_4:4012529-4012548 None:intergenic 55.0%
CTCGTTTACATCCAGCCACC+CGG + chr7_4:4012743-4012762 None:intergenic 55.0%
AACCGACCACTACTGCGGCA+AGG - chr7_4:4012042-4012061 Msa1136060:CDS 60.0%
ACCGACCACTACTGCGGCAA+GGG - chr7_4:4012043-4012062 Msa1136060:CDS 60.0%
ACCCTTGCCGCAGTAGTGGT+CGG + chr7_4:4012047-4012066 None:intergenic 60.0%
! TCTGGAGTTGGAGGAGGAGG+AGG + chr7_4:4012097-4012116 None:intergenic 60.0%
TCCTCCTCCTCCAACTCCAG+AGG - chr7_4:4012096-4012115 Msa1136060:CDS 60.0%
!! TCCTCTGGAGTTGGAGGAGG+AGG + chr7_4:4012100-4012119 None:intergenic 60.0%
TCCTCCTCCAACTCCAGAGG+AGG - chr7_4:4012099-4012118 Msa1136060:CDS 60.0%
!! TCCTCCTCTGGAGTTGGAGG+AGG + chr7_4:4012103-4012122 None:intergenic 60.0%
TTCCCCAGGTTCGGCAACGA+AGG - chr7_4:4012235-4012254 Msa1136060:CDS 60.0%
CTCCTTCGTTGCCGAACCTG+GGG + chr7_4:4012240-4012259 None:intergenic 60.0%
GTCTCCTTCGTTGCCGAACC+TGG + chr7_4:4012242-4012261 None:intergenic 60.0%
CCTCTTAGCCCCTATGACCG+GGG - chr7_4:4012331-4012350 Msa1136060:CDS 60.0%
AACCGACCACTACTGCGGCA+AGG - chr7_4:4012042-4012061 Msa1136060:CDS 60.0%
ACCGACCACTACTGCGGCAA+GGG - chr7_4:4012043-4012062 Msa1136060:CDS 60.0%
ACCCTTGCCGCAGTAGTGGT+CGG + chr7_4:4012047-4012066 None:intergenic 60.0%
! TCTGGAGTTGGAGGAGGAGG+AGG + chr7_4:4012097-4012116 None:intergenic 60.0%
TCCTCCTCCTCCAACTCCAG+AGG - chr7_4:4012096-4012115 Msa1136060:CDS 60.0%
!! TCCTCTGGAGTTGGAGGAGG+AGG + chr7_4:4012100-4012119 None:intergenic 60.0%
TCCTCCTCCAACTCCAGAGG+AGG - chr7_4:4012099-4012118 Msa1136060:CDS 60.0%
!! TCCTCCTCTGGAGTTGGAGG+AGG + chr7_4:4012103-4012122 None:intergenic 60.0%
TTCCCCAGGTTCGGCAACGA+AGG - chr7_4:4012235-4012254 Msa1136060:CDS 60.0%
CTCCTTCGTTGCCGAACCTG+GGG + chr7_4:4012240-4012259 None:intergenic 60.0%
GTCTCCTTCGTTGCCGAACC+TGG + chr7_4:4012242-4012261 None:intergenic 60.0%
CCTCTTAGCCCCTATGACCG+GGG - chr7_4:4012331-4012350 Msa1136060:CDS 60.0%
GGCAACCCTTGCCGCAGTAG+TGG + chr7_4:4012051-4012070 None:intergenic 65.0%
CCCCGGTCATAGGGGCTAAG+AGG + chr7_4:4012334-4012353 None:intergenic 65.0%
GGCTGGAAGGAATGCGCGAC+CGG - chr7_4:4012721-4012740 Msa1136060:CDS 65.0%
GCTGGAAGGAATGCGCGACC+GGG - chr7_4:4012722-4012741 Msa1136060:CDS 65.0%
GGCAACCCTTGCCGCAGTAG+TGG + chr7_4:4012051-4012070 None:intergenic 65.0%
CCCCGGTCATAGGGGCTAAG+AGG + chr7_4:4012334-4012353 None:intergenic 65.0%
GGCTGGAAGGAATGCGCGAC+CGG - chr7_4:4012721-4012740 Msa1136060:CDS 65.0%
GCTGGAAGGAATGCGCGACC+GGG - chr7_4:4012722-4012741 Msa1136060:CDS 65.0%
GGAAGGAATGCGCGACCGGG+TGG - chr7_4:4012725-4012744 Msa1136060:CDS 70.0%
GGAAGGAATGCGCGACCGGG+TGG - chr7_4:4012725-4012744 Msa1136060:CDS 70.0%
GGAATGCGCGACCGGGTGGC+TGG - chr7_4:4012729-4012748 Msa1136060:CDS 75.0%
GGAATGCGCGACCGGGTGGC+TGG - chr7_4:4012729-4012748 Msa1136060:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 4011869 4012864 4011869 ID=Msa1136060;Name=Msa1136060
chr7_4 mRNA 4011869 4012864 4011869 ID=Msa1136060-mRNA-1;Parent=Msa1136060;Name=Msa1136060-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|331
chr7_4 exon 4011869 4012864 4011869 ID=Msa1136060-mRNA-1:exon:1095;Parent=Msa1136060-mRNA-1
chr7_4 CDS 4011869 4012864 4011869 ID=Msa1136060-mRNA-1:cds;Parent=Msa1136060-mRNA-1
Gene Sequence

>Msa1136060

ATGGGGAGATTGGGCCGAAGTGTAATATTCCAGTTTCCAAAAATAGCAATAGTACTACTAATTATAGCATCACCAGGAAGGTGTTGGGCAGACAAAGAGCAATGTGGAAAACAAGCTGGGGGTGCACTGTGTCATAATGAATTATGCTGCAGTGCATGGGGCTTTTGTGGATCAACCGACCACTACTGCGGCAAGGGTTGCCAGAGTCAATGTAATGGAACTACTCCTCCTCCTCCTCCAACTCCAGAGGAGGAGTACCTCATCTCGAGAAAGGATTTCAACGAGATGCTTAAACATCGCGACGATGATGAGTGTGAGGGGAAAGGATTTTACACCTACGAAGGATTTGTTGAAGCTGCCAAAACATTCCCCAGGTTCGGCAACGAAGGAGACACTCAAGAGATTAAAAGAGACATTGCTGCTTTTTTTGGTCAAAGCTCTCACAAAACAAGAGGTGGATCACCTCTTAGCCCCTATGACCGGGGATATTGCTTTATGAATGAAACGAATCCCATCGAAGAAGACTACTGCGAACCAAGCTCTAAATTTCCATGTGTTCCTGGGAAGCAATACTACGGGAGGGGTCCGTTTCAGATCAAAGGCAATAAAATATATGGAGAATGTGGAAGTATAATAGGTGTTGATTTGCTCAATAACCCAGATCTCATTGCCACAGACCCTGTTATATCCTTCAAGAGTGCTATATGGTATTGGATGAGAACTCCTCCACCTTTCCCTTTCCAAGTAAAGCCATCTTGCCATGACGCTATAACTGGACGATGGATCCCTACTGATTTTGATGTTAGTCAGAGGAGGTTTCCAGGATATGGGATGACCACATACGTCATAGAAGGCTGGAAGGAATGCGCGACCGGGTGGCTGGATGTAAACGAGATGGATCGGGTTGGATATTACATGAGATATTGTGACATACTTGGAGTTCGATACGGAGATCACCTTGAATGTTTTGAATTTTCTTCTCTTGCCATCTCTTGA

Protein sequence

>Msa1136060

MGRLGRSVIFQFPKIAIVLLIIASPGRCWADKEQCGKQAGGALCHNELCCSAWGFCGSTDHYCGKGCQSQCNGTTPPPPPTPEEEYLISRKDFNEMLKHRDDDECEGKGFYTYEGFVEAAKTFPRFGNEGDTQEIKRDIAAFFGQSSHKTRGGSPLSPYDRGYCFMNETNPIEEDYCEPSSKFPCVPGKQYYGRGPFQIKGNKIYGECGSIIGVDLLNNPDLIATDPVISFKSAIWYWMRTPPPFPFQVKPSCHDAITGRWIPTDFDVSQRRFPGYGMTTYVIEGWKECATGWLDVNEMDRVGYYMRYCDILGVRYGDHLECFEFSSLAIS*