Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077250 | XP_013468683.1 | 95.115 | 348 | 17 | 0 | 1 | 348 | 1 | 348 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077250 | sp|Q9ZUS1|WTR13_ARATH | 40.426 | 329 | 196 | 0 | 2 | 330 | 3 | 331 | 4.61e-87 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077250 | A0A072VX98 | 95.115 | 348 | 17 | 0 | 1 | 348 | 1 | 348 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0077250 | 0.804963 | 1.678353e-49 | -8.615850e-47 |
| Msa0021870 | Msa0077250 | 0.815833 | 7.548356e-52 | -8.615850e-47 |
| Msa0024650 | Msa0077250 | 0.814041 | 1.885412e-51 | -8.615850e-47 |
| Msa0034100 | Msa0077250 | -0.800314 | 1.527293e-48 | -8.615850e-47 |
| Msa0063540 | Msa0077250 | 0.803706 | 3.067431e-49 | -8.615850e-47 |
| Msa0077230 | Msa0077250 | 0.874287 | 7.596200e-68 | -8.615850e-47 |
| Msa0077250 | Msa0136180 | -0.816341 | 5.814642e-52 | -8.615850e-47 |
| Msa0077250 | Msa0150910 | 0.818450 | 1.947946e-52 | -8.615850e-47 |
| Msa0077250 | Msa0160650 | -0.807586 | 4.701892e-50 | -8.615850e-47 |
| Msa0077250 | Msa0163340 | 0.808317 | 3.287385e-50 | -8.615850e-47 |
| Msa0077250 | Msa0190470 | -0.807818 | 4.196946e-50 | -8.615850e-47 |
| Msa0077250 | Msa0196260 | 0.804424 | 2.174799e-49 | -8.615850e-47 |
| Msa0077250 | Msa0232660 | -0.806395 | 8.399685e-50 | -8.615850e-47 |
| Msa0077250 | Msa0304350 | -0.800385 | 1.477297e-48 | -8.615850e-47 |
| Msa0077250 | Msa0305910 | -0.800172 | 1.632682e-48 | -8.615850e-47 |
| Msa0077250 | Msa0318360 | 0.802028 | 6.813555e-49 | -8.615850e-47 |
| Msa0077250 | Msa0370620 | 0.826049 | 3.357440e-54 | -8.615850e-47 |
| Msa0077250 | Msa0414480 | 0.812882 | 3.389306e-51 | -8.615850e-47 |
| Msa0077250 | Msa0425950 | 0.801040 | 1.086267e-48 | -8.615850e-47 |
| Msa0077250 | Msa0436590 | -0.818010 | 2.450375e-52 | -8.615850e-47 |
| Msa0077250 | Msa0436600 | -0.809069 | 2.270099e-50 | -8.615850e-47 |
| Msa0077250 | Msa0436610 | -0.802332 | 5.899909e-49 | -8.615850e-47 |
| Msa0077250 | Msa0472390 | 0.800159 | 1.642796e-48 | -8.615850e-47 |
| Msa0077250 | Msa0535570 | 0.820300 | 7.378958e-53 | -8.615850e-47 |
| Msa0077250 | Msa0609460 | 0.803143 | 4.012274e-49 | -8.615850e-47 |
| Msa0077250 | Msa0611950 | 0.803589 | 3.243262e-49 | -8.615850e-47 |
| Msa0077250 | Msa0630850 | -0.801769 | 7.701879e-49 | -8.615850e-47 |
| Msa0077250 | Msa0672950 | 0.804810 | 1.806311e-49 | -8.615850e-47 |
| Msa0077250 | Msa0681880 | -0.814958 | 1.181685e-51 | -8.615850e-47 |
| Msa0077250 | Msa0685390 | -0.811196 | 7.900744e-51 | -8.615850e-47 |
| Msa0077250 | Msa0708840 | -0.804654 | 1.947721e-49 | -8.615850e-47 |
| Msa0077250 | Msa0715250 | 0.808401 | 3.153385e-50 | -8.615850e-47 |
| Msa0077250 | Msa0734190 | -0.805083 | 1.584174e-49 | -8.615850e-47 |
| Msa0077250 | Msa0768670 | 0.809148 | 2.183268e-50 | -8.615850e-47 |
| Msa0077250 | Msa0794090 | 0.801266 | 9.763321e-49 | -8.615850e-47 |
| Msa0077250 | Msa0812800 | -0.802678 | 5.005972e-49 | -8.615850e-47 |
| Msa0077250 | Msa0829770 | -0.804336 | 2.268892e-49 | -8.615850e-47 |
| Msa0077250 | Msa0853150 | -0.815300 | 9.922964e-52 | -8.615850e-47 |
| Msa0077250 | Msa0893840 | 0.803322 | 3.683569e-49 | -8.615850e-47 |
| Msa0077250 | Msa0896920 | 0.842967 | 1.871252e-58 | -8.615850e-47 |
| Msa0077250 | Msa0970270 | 0.808885 | 2.485594e-50 | -8.615850e-47 |
| Msa0077250 | Msa0996980 | 0.816488 | 5.388966e-52 | -8.615850e-47 |
| Msa0077250 | Msa1021620 | 0.801056 | 1.078215e-48 | -8.615850e-47 |
| Msa0077250 | Msa1038610 | -0.802616 | 5.156044e-49 | -8.615850e-47 |
| Msa0077250 | Msa1064940 | 0.808343 | 3.244234e-50 | -8.615850e-47 |
| Msa0077250 | Msa1070630 | -0.821364 | 4.200419e-53 | -8.615850e-47 |
| Msa0077250 | Msa1078590 | -0.801380 | 9.255523e-49 | -8.615850e-47 |
| Msa0077250 | Msa1078760 | -0.801421 | 9.075259e-49 | -8.615850e-47 |
| Msa0077250 | Msa1093190 | -0.803385 | 3.574477e-49 | -8.615850e-47 |
| Msa0077250 | Msa1104020 | -0.805057 | 1.604119e-49 | -8.615850e-47 |
| Msa0077250 | Msa1107330 | 0.803960 | 2.715699e-49 | -8.615850e-47 |
| Msa0077250 | Msa1111650 | 0.804335 | 2.270044e-49 | -8.615850e-47 |
| Msa0077250 | Msa1122550 | 0.808495 | 3.011725e-50 | -8.615850e-47 |
| Msa0077250 | Msa1127200 | 0.802407 | 5.692156e-49 | -8.615850e-47 |
| Msa0077250 | Msa1129120 | -0.800008 | 1.762709e-48 | -8.615850e-47 |
| Msa0077250 | Msa1147010 | 0.801883 | 7.297244e-49 | -8.615850e-47 |
| Msa0077250 | Msa1158450 | -0.820373 | 7.099195e-53 | -8.615850e-47 |
| Msa0077250 | Msa1165460 | 0.806649 | 7.424324e-50 | -8.615850e-47 |
| Msa0077250 | Msa1182530 | -0.814444 | 1.535739e-51 | -8.615850e-47 |
| Msa0077250 | Msa1220390 | -0.804556 | 2.041661e-49 | -8.615850e-47 |
| Msa0077250 | Msa1259560 | 0.802600 | 5.195644e-49 | -8.615850e-47 |
| Msa0077250 | Msa1265900 | -0.805696 | 1.178595e-49 | -8.615850e-47 |
| Msa0077250 | Msa1281780 | 0.815727 | 7.970037e-52 | -8.615850e-47 |
| Msa0077250 | Msa1286860 | -0.801936 | 7.117721e-49 | -8.615850e-47 |
| Msa0077250 | Msa1295210 | -0.806745 | 7.086078e-50 | -8.615850e-47 |
| Msa0077250 | Msa1321010 | 0.811398 | 7.141602e-51 | -8.615850e-47 |
| Msa0077250 | Msa1323120 | 0.810914 | 9.096846e-51 | -8.615850e-47 |
| Msa0077250 | Msa1329660 | -0.808770 | 2.630789e-50 | -8.615850e-47 |
| Msa0077250 | Msa1344930 | 0.816314 | 5.894369e-52 | -8.615850e-47 |
| Msa0077250 | Msa1355780 | 0.913464 | 5.970251e-84 | -8.615850e-47 |
| Msa0077250 | Msa1368660 | -0.805681 | 1.187259e-49 | -8.615850e-47 |
| Msa0077250 | Msa1400290 | -0.804704 | 1.901299e-49 | -8.615850e-47 |
| Msa0077250 | Msa1407670 | 0.801596 | 8.357597e-49 | -8.615850e-47 |
| Msa0077250 | Msa1409600 | 0.809086 | 2.251097e-50 | -8.615850e-47 |
| Msa0077250 | Msa1423930 | 0.882902 | 7.051592e-71 | -8.615850e-47 |
| Msa0077250 | Msa1432730 | -0.805115 | 1.560165e-49 | -8.615850e-47 |
| Msa0077250 | Msa1446220 | -0.800965 | 1.125104e-48 | -8.615850e-47 |
| Msa0077250 | Msa1455360 | 0.816609 | 5.062372e-52 | -8.615850e-47 |
| Msa0077250 | Msa1459610 | 0.816337 | 5.824904e-52 | -8.615850e-47 |
| Msa0077250 | Msa1459630 | -0.802263 | 6.095168e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077250 | MtrunA17_Chr1g0186641 | 95.115 | 348 | 17 | 0 | 1 | 348 | 1 | 348 | 0.0 | 680 |
| Msa0077250 | MtrunA17_Chr1g0186611 | 82.857 | 350 | 57 | 1 | 1 | 347 | 1 | 350 | 0.0 | 599 |
| Msa0077250 | MtrunA17_Chr1g0186601 | 81.197 | 351 | 60 | 2 | 1 | 348 | 1 | 348 | 0.0 | 588 |
| Msa0077250 | MtrunA17_Chr1g0186571 | 81.657 | 338 | 62 | 0 | 1 | 338 | 1 | 338 | 0.0 | 564 |
| Msa0077250 | MtrunA17_Chr1g0186561 | 81.871 | 342 | 58 | 2 | 1 | 338 | 1 | 342 | 0.0 | 556 |
| Msa0077250 | MtrunA17_Chr1g0171301 | 76.353 | 351 | 78 | 3 | 1 | 346 | 1 | 351 | 0.0 | 538 |
| Msa0077250 | MtrunA17_Chr1g0184221 | 48.864 | 352 | 161 | 4 | 2 | 339 | 5 | 351 | 9.55e-122 | 355 |
| Msa0077250 | MtrunA17_Chr7g0255561 | 42.730 | 337 | 184 | 3 | 3 | 332 | 4 | 338 | 2.42e-90 | 276 |
| Msa0077250 | MtrunA17_Chr7g0255581 | 42.730 | 337 | 184 | 3 | 3 | 332 | 4 | 338 | 2.42e-90 | 276 |
| Msa0077250 | MtrunA17_Chr1g0182291 | 41.925 | 322 | 187 | 0 | 9 | 330 | 11 | 332 | 7.51e-90 | 273 |
| Msa0077250 | MtrunA17_Chr7g0263101 | 41.088 | 331 | 190 | 2 | 2 | 330 | 5 | 332 | 7.79e-90 | 274 |
| Msa0077250 | MtrunA17_Chr3g0114691 | 40.854 | 328 | 189 | 2 | 9 | 332 | 16 | 342 | 1.31e-85 | 264 |
| Msa0077250 | MtrunA17_Chr1g0160171 | 41.515 | 330 | 190 | 2 | 3 | 330 | 6 | 334 | 2.00e-85 | 263 |
| Msa0077250 | MtrunA17_Chr1g0160181 | 39.820 | 334 | 197 | 1 | 3 | 332 | 8 | 341 | 2.43e-83 | 258 |
| Msa0077250 | MtrunA17_Chr3g0081511 | 41.716 | 338 | 191 | 4 | 10 | 342 | 14 | 350 | 1.16e-82 | 256 |
| Msa0077250 | MtrunA17_Chr3g0081421 | 41.641 | 329 | 184 | 4 | 9 | 330 | 13 | 340 | 2.54e-82 | 255 |
| Msa0077250 | MtrunA17_Chr3g0114731 | 39.080 | 348 | 201 | 3 | 11 | 348 | 16 | 362 | 2.12e-81 | 253 |
| Msa0077250 | MtrunA17_Chr8g0354121 | 38.824 | 340 | 199 | 4 | 10 | 342 | 10 | 347 | 5.67e-81 | 252 |
| Msa0077250 | MtrunA17_Chr3g0114711 | 36.267 | 375 | 201 | 4 | 1 | 337 | 1 | 375 | 1.55e-80 | 251 |
| Msa0077250 | MtrunA17_Chr3g0142131 | 39.053 | 338 | 190 | 2 | 10 | 332 | 17 | 353 | 1.30e-79 | 248 |
| Msa0077250 | MtrunA17_Chr1g0155761 | 35.549 | 346 | 196 | 3 | 10 | 332 | 18 | 359 | 4.75e-75 | 237 |
| Msa0077250 | MtrunA17_Chr3g0114701 | 38.957 | 326 | 195 | 2 | 9 | 330 | 5 | 330 | 5.71e-73 | 231 |
| Msa0077250 | MtrunA17_Chr6g0483401 | 37.304 | 319 | 179 | 3 | 29 | 334 | 26 | 336 | 5.87e-71 | 225 |
| Msa0077250 | MtrunA17_Chr2g0278541 | 37.168 | 339 | 200 | 4 | 3 | 330 | 2 | 338 | 2.43e-69 | 222 |
| Msa0077250 | MtrunA17_Chr3g0129601 | 36.556 | 331 | 198 | 5 | 9 | 331 | 25 | 351 | 9.83e-69 | 219 |
| Msa0077250 | MtrunA17_Chr2g0290611 | 38.889 | 342 | 198 | 6 | 9 | 342 | 8 | 346 | 2.13e-68 | 218 |
| Msa0077250 | MtrunA17_Chr6g0463971 | 37.092 | 337 | 201 | 4 | 9 | 336 | 12 | 346 | 3.55e-67 | 215 |
| Msa0077250 | MtrunA17_Chr2g0332001 | 35.180 | 361 | 204 | 5 | 12 | 346 | 37 | 393 | 8.92e-66 | 213 |
| Msa0077250 | MtrunA17_Chr8g0334761 | 37.126 | 334 | 201 | 4 | 12 | 337 | 9 | 341 | 2.12e-64 | 208 |
| Msa0077250 | MtrunA17_Chr2g0278551 | 35.484 | 341 | 211 | 4 | 3 | 336 | 2 | 340 | 2.17e-63 | 206 |
| Msa0077250 | MtrunA17_Chr1g0164831 | 33.528 | 343 | 213 | 6 | 12 | 347 | 2 | 336 | 8.13e-63 | 203 |
| Msa0077250 | MtrunA17_Chr1g0177221 | 37.209 | 258 | 159 | 2 | 3 | 258 | 8 | 264 | 8.56e-63 | 201 |
| Msa0077250 | MtrunA17_Chr3g0129571 | 34.483 | 348 | 219 | 4 | 9 | 348 | 3 | 349 | 1.17e-62 | 204 |
| Msa0077250 | MtrunA17_Chr2g0278561 | 34.694 | 343 | 216 | 4 | 1 | 338 | 3 | 342 | 1.66e-62 | 204 |
| Msa0077250 | MtrunA17_Chr4g0059311 | 32.063 | 315 | 201 | 3 | 27 | 334 | 26 | 334 | 7.00e-61 | 199 |
| Msa0077250 | MtrunA17_Chr2g0284261 | 32.399 | 321 | 216 | 1 | 10 | 330 | 5 | 324 | 2.66e-60 | 197 |
| Msa0077250 | MtrunA17_Chr3g0126101 | 33.856 | 319 | 209 | 2 | 14 | 332 | 7 | 323 | 1.06e-59 | 195 |
| Msa0077250 | MtrunA17_Chr8g0383731 | 34.139 | 331 | 209 | 2 | 9 | 331 | 1 | 330 | 2.03e-59 | 195 |
| Msa0077250 | MtrunA17_Chr4g0050891 | 32.733 | 333 | 214 | 3 | 1 | 325 | 1 | 331 | 2.54e-59 | 195 |
| Msa0077250 | MtrunA17_Chr4g0073241 | 35.241 | 332 | 196 | 6 | 9 | 330 | 4 | 326 | 1.65e-58 | 193 |
| Msa0077250 | MtrunA17_Chr3g0129591 | 34.006 | 347 | 217 | 6 | 11 | 346 | 3 | 348 | 3.12e-57 | 189 |
| Msa0077250 | MtrunA17_Chr4g0050941 | 35.511 | 352 | 210 | 7 | 3 | 342 | 2 | 348 | 6.54e-57 | 189 |
| Msa0077250 | MtrunA17_Chr8g0334771 | 35.347 | 331 | 205 | 5 | 14 | 338 | 11 | 338 | 7.25e-56 | 186 |
| Msa0077250 | MtrunA17_Chr7g0271561 | 32.121 | 330 | 212 | 4 | 14 | 334 | 8 | 334 | 7.88e-56 | 186 |
| Msa0077250 | MtrunA17_Chr2g0310441 | 34.132 | 334 | 207 | 5 | 12 | 338 | 9 | 336 | 1.71e-55 | 185 |
| Msa0077250 | MtrunA17_Chr4g0050881 | 33.333 | 339 | 215 | 5 | 10 | 340 | 6 | 341 | 4.54e-55 | 184 |
| Msa0077250 | MtrunA17_Chr4g0051021 | 33.333 | 348 | 221 | 6 | 9 | 347 | 10 | 355 | 2.13e-54 | 182 |
| Msa0077250 | MtrunA17_Chr5g0413961 | 30.499 | 341 | 222 | 4 | 14 | 348 | 15 | 346 | 3.16e-54 | 181 |
| Msa0077250 | MtrunA17_Chr8g0334751 | 34.139 | 331 | 211 | 5 | 12 | 338 | 10 | 337 | 3.78e-54 | 181 |
| Msa0077250 | MtrunA17_Chr1g0160111 | 30.982 | 326 | 214 | 4 | 22 | 339 | 16 | 338 | 2.47e-52 | 177 |
| Msa0077250 | MtrunA17_Chr5g0413921 | 32.166 | 314 | 198 | 6 | 33 | 338 | 27 | 333 | 4.46e-50 | 170 |
| Msa0077250 | MtrunA17_Chr4g0050931 | 30.286 | 350 | 191 | 6 | 3 | 342 | 2 | 308 | 1.91e-49 | 168 |
| Msa0077250 | MtrunA17_Chr5g0413941 | 31.373 | 306 | 199 | 6 | 33 | 332 | 27 | 327 | 2.16e-49 | 169 |
| Msa0077250 | MtrunA17_Chr3g0129581 | 33.141 | 347 | 220 | 5 | 11 | 346 | 3 | 348 | 2.75e-49 | 169 |
| Msa0077250 | MtrunA17_Chr5g0407971 | 30.973 | 339 | 213 | 5 | 12 | 332 | 10 | 345 | 3.78e-47 | 164 |
| Msa0077250 | MtrunA17_Chr5g0408031 | 30.252 | 357 | 221 | 5 | 10 | 347 | 7 | 354 | 4.18e-47 | 164 |
| Msa0077250 | MtrunA17_Chr5g0407991 | 31.897 | 348 | 214 | 8 | 12 | 339 | 8 | 352 | 7.04e-47 | 163 |
| Msa0077250 | MtrunA17_Chr5g0413931 | 30.435 | 345 | 221 | 8 | 17 | 347 | 10 | 349 | 3.80e-46 | 160 |
| Msa0077250 | MtrunA17_Chr5g0408041 | 31.034 | 348 | 217 | 6 | 13 | 339 | 11 | 356 | 4.09e-46 | 161 |
| Msa0077250 | MtrunA17_Chr5g0408001 | 31.176 | 340 | 215 | 5 | 10 | 332 | 7 | 344 | 3.40e-45 | 159 |
| Msa0077250 | MtrunA17_Chr1g0150151 | 32.092 | 349 | 220 | 9 | 10 | 347 | 8 | 350 | 4.97e-44 | 155 |
| Msa0077250 | MtrunA17_Chr3g0126091 | 28.142 | 366 | 233 | 9 | 1 | 346 | 1 | 356 | 2.13e-43 | 153 |
| Msa0077250 | MtrunA17_Chr4g0051001 | 32.154 | 311 | 199 | 3 | 6 | 308 | 24 | 330 | 3.13e-42 | 149 |
| Msa0077250 | MtrunA17_Chr5g0413951 | 28.758 | 306 | 207 | 6 | 33 | 332 | 27 | 327 | 3.44e-42 | 150 |
| Msa0077250 | MtrunA17_Chr6g0451171 | 34.412 | 340 | 212 | 9 | 11 | 345 | 10 | 343 | 4.62e-42 | 150 |
| Msa0077250 | MtrunA17_Chr5g0428881 | 26.608 | 342 | 239 | 4 | 16 | 347 | 21 | 360 | 8.22e-42 | 150 |
| Msa0077250 | MtrunA17_Chr6g0451211 | 34.365 | 323 | 199 | 9 | 33 | 348 | 32 | 348 | 2.00e-41 | 148 |
| Msa0077250 | MtrunA17_Chr7g0227921 | 31.579 | 304 | 204 | 4 | 33 | 334 | 31 | 332 | 2.01e-40 | 145 |
| Msa0077250 | MtrunA17_Chr6g0451201 | 34.437 | 302 | 188 | 8 | 33 | 331 | 32 | 326 | 3.42e-40 | 145 |
| Msa0077250 | MtrunA17_Chr5g0404811 | 35.981 | 214 | 132 | 2 | 123 | 332 | 3 | 215 | 1.93e-38 | 137 |
| Msa0077250 | MtrunA17_Chr5g0441761 | 26.048 | 334 | 239 | 3 | 18 | 347 | 19 | 348 | 6.44e-38 | 139 |
| Msa0077250 | MtrunA17_Chr6g0451251 | 34.426 | 305 | 187 | 7 | 33 | 331 | 32 | 329 | 7.63e-38 | 139 |
| Msa0077250 | MtrunA17_Chr8g0369841 | 27.729 | 339 | 226 | 5 | 12 | 333 | 8 | 344 | 8.20e-38 | 139 |
| Msa0077250 | MtrunA17_Chr6g0451261 | 30.584 | 291 | 189 | 6 | 38 | 321 | 36 | 320 | 2.17e-34 | 134 |
| Msa0077250 | MtrunA17_Chr3g0084091 | 28.794 | 257 | 173 | 3 | 88 | 338 | 5 | 257 | 6.44e-34 | 127 |
| Msa0077250 | MtrunA17_Chr1g0211801 | 30.677 | 251 | 164 | 5 | 13 | 258 | 11 | 256 | 1.14e-32 | 122 |
| Msa0077250 | MtrunA17_Chr2g0278021 | 34.579 | 214 | 128 | 3 | 127 | 330 | 1 | 212 | 1.44e-30 | 117 |
| Msa0077250 | MtrunA17_Chr5g0429001 | 25.085 | 295 | 209 | 4 | 65 | 348 | 3 | 296 | 1.62e-30 | 118 |
| Msa0077250 | MtrunA17_Chr5g0399281 | 29.846 | 325 | 202 | 8 | 31 | 339 | 26 | 340 | 4.30e-29 | 115 |
| Msa0077250 | MtrunA17_Chr4g0056081 | 28.889 | 315 | 208 | 7 | 39 | 339 | 40 | 352 | 3.86e-28 | 112 |
| Msa0077250 | MtrunA17_Chr6g0451191 | 34.434 | 212 | 128 | 6 | 139 | 345 | 13 | 218 | 4.08e-27 | 107 |
| Msa0077250 | MtrunA17_Chr1g0172881 | 35.065 | 154 | 82 | 4 | 108 | 257 | 9 | 148 | 2.29e-25 | 100 |
| Msa0077250 | MtrunA17_Chr8g0334721 | 44.068 | 118 | 64 | 2 | 221 | 338 | 1 | 116 | 1.90e-24 | 97.8 |
| Msa0077250 | MtrunA17_Chr1g0182261 | 37.857 | 140 | 85 | 2 | 195 | 332 | 73 | 212 | 3.11e-23 | 96.3 |
| Msa0077250 | MtrunA17_Chr8g0334711 | 34.807 | 181 | 114 | 3 | 12 | 189 | 9 | 188 | 8.14e-22 | 92.0 |
| Msa0077250 | MtrunA17_Chr4g0050921 | 40.777 | 103 | 60 | 1 | 209 | 311 | 3 | 104 | 1.97e-19 | 83.2 |
| Msa0077250 | MtrunA17_Chr1g0211811 | 44.737 | 76 | 40 | 1 | 260 | 333 | 1 | 76 | 2.31e-17 | 76.3 |
| Msa0077250 | MtrunA17_Chr5g0404801 | 33.333 | 114 | 76 | 0 | 13 | 126 | 7 | 120 | 5.84e-17 | 76.3 |
| Msa0077250 | MtrunA17_Chr2g0278031 | 33.607 | 122 | 81 | 0 | 4 | 125 | 5 | 126 | 2.26e-16 | 74.7 |
| Msa0077250 | MtrunA17_Chr1g0177231 | 42.553 | 94 | 52 | 1 | 255 | 348 | 25 | 116 | 4.10e-15 | 71.2 |
| Msa0077250 | MtrunA17_Chr1g0172891 | 43.662 | 71 | 40 | 0 | 262 | 332 | 10 | 80 | 3.39e-13 | 65.5 |
| Msa0077250 | MtrunA17_Chr8g0334731 | 33.784 | 148 | 93 | 3 | 62 | 204 | 40 | 187 | 4.18e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077250 | AT2G37460.1 | 40.426 | 329 | 196 | 0 | 2 | 330 | 3 | 331 | 4.69e-88 | 270 |
| Msa0077250 | AT5G07050.1 | 41.194 | 335 | 186 | 3 | 9 | 333 | 13 | 346 | 7.86e-88 | 270 |
| Msa0077250 | AT2G39510.1 | 40.308 | 325 | 192 | 2 | 9 | 331 | 3 | 327 | 3.13e-86 | 265 |
| Msa0077250 | AT1G44800.1 | 39.244 | 344 | 200 | 3 | 9 | 344 | 6 | 348 | 1.50e-81 | 253 |
| Msa0077250 | AT1G21890.1 | 38.596 | 342 | 198 | 2 | 9 | 339 | 6 | 346 | 3.09e-81 | 253 |
| Msa0077250 | AT4G08290.1 | 38.690 | 336 | 201 | 3 | 3 | 334 | 2 | 336 | 3.46e-81 | 252 |
| Msa0077250 | AT4G08300.1 | 39.403 | 335 | 197 | 3 | 9 | 338 | 6 | 339 | 3.77e-81 | 252 |
| Msa0077250 | AT5G13670.1 | 38.415 | 328 | 188 | 4 | 13 | 331 | 7 | 329 | 5.32e-78 | 244 |
| Msa0077250 | AT2G40900.1 | 38.125 | 320 | 194 | 3 | 13 | 332 | 10 | 325 | 1.90e-77 | 243 |
| Msa0077250 | AT1G75500.1 | 36.522 | 345 | 203 | 3 | 15 | 347 | 21 | 361 | 1.35e-76 | 241 |
| Msa0077250 | AT1G75500.2 | 36.522 | 345 | 203 | 3 | 15 | 347 | 21 | 361 | 1.35e-76 | 241 |
| Msa0077250 | AT3G56620.1 | 39.623 | 318 | 187 | 3 | 13 | 329 | 10 | 323 | 6.14e-74 | 233 |
| Msa0077250 | AT3G18200.2 | 37.143 | 315 | 189 | 4 | 29 | 339 | 50 | 359 | 2.15e-71 | 227 |
| Msa0077250 | AT2G37450.2 | 38.580 | 324 | 178 | 1 | 9 | 332 | 4 | 306 | 5.12e-71 | 224 |
| Msa0077250 | AT1G21890.2 | 36.932 | 352 | 198 | 4 | 9 | 348 | 6 | 345 | 3.01e-70 | 223 |
| Msa0077250 | AT4G30420.2 | 34.160 | 363 | 209 | 6 | 9 | 346 | 4 | 361 | 9.08e-67 | 215 |
| Msa0077250 | AT5G64700.1 | 35.345 | 348 | 209 | 4 | 13 | 345 | 7 | 353 | 1.57e-66 | 214 |
| Msa0077250 | AT1G43650.1 | 35.890 | 326 | 207 | 2 | 9 | 334 | 2 | 325 | 3.83e-66 | 212 |
| Msa0077250 | AT4G30420.1 | 34.463 | 354 | 202 | 6 | 18 | 346 | 3 | 351 | 2.49e-64 | 209 |
| Msa0077250 | AT3G30340.1 | 34.139 | 331 | 214 | 2 | 12 | 339 | 9 | 338 | 6.21e-64 | 207 |
| Msa0077250 | AT3G53210.1 | 35.455 | 330 | 195 | 5 | 13 | 332 | 9 | 330 | 3.29e-62 | 203 |
| Msa0077250 | AT1G09380.1 | 32.615 | 325 | 210 | 3 | 11 | 328 | 5 | 327 | 1.34e-59 | 196 |
| Msa0077250 | AT2G37450.3 | 41.453 | 234 | 137 | 0 | 99 | 332 | 1 | 234 | 1.83e-56 | 185 |
| Msa0077250 | AT5G40210.1 | 32.075 | 318 | 199 | 4 | 18 | 334 | 17 | 318 | 2.34e-54 | 182 |
| Msa0077250 | AT4G08290.2 | 36.680 | 259 | 159 | 3 | 3 | 257 | 2 | 259 | 1.31e-53 | 178 |
| Msa0077250 | AT4G01440.1 | 30.063 | 316 | 218 | 2 | 14 | 327 | 10 | 324 | 1.54e-50 | 172 |
| Msa0077250 | AT1G11450.3 | 31.250 | 336 | 228 | 3 | 14 | 347 | 16 | 350 | 3.72e-50 | 171 |
| Msa0077250 | AT3G18200.1 | 37.607 | 234 | 137 | 4 | 110 | 339 | 1 | 229 | 1.18e-49 | 167 |
| Msa0077250 | AT1G11450.5 | 33.113 | 302 | 199 | 3 | 48 | 347 | 6 | 306 | 5.60e-48 | 164 |
| Msa0077250 | AT4G01430.1 | 30.252 | 357 | 222 | 8 | 10 | 347 | 5 | 353 | 1.54e-47 | 165 |
| Msa0077250 | AT1G01070.1 | 30.435 | 345 | 227 | 5 | 9 | 346 | 11 | 349 | 1.14e-46 | 162 |
| Msa0077250 | AT2G37450.1 | 41.546 | 207 | 121 | 0 | 126 | 332 | 61 | 267 | 2.12e-46 | 160 |
| Msa0077250 | AT1G11450.2 | 32.886 | 298 | 197 | 3 | 52 | 347 | 3 | 299 | 2.16e-46 | 160 |
| Msa0077250 | AT1G68170.2 | 29.609 | 358 | 234 | 5 | 3 | 344 | 2 | 357 | 3.41e-46 | 161 |
| Msa0077250 | AT1G11460.1 | 30.149 | 335 | 228 | 4 | 2 | 332 | 4 | 336 | 1.25e-45 | 159 |
| Msa0077250 | AT5G40230.1 | 30.931 | 333 | 218 | 5 | 10 | 334 | 17 | 345 | 3.37e-45 | 159 |
| Msa0077250 | AT3G28130.2 | 29.129 | 333 | 225 | 5 | 10 | 335 | 9 | 337 | 9.52e-45 | 157 |
| Msa0077250 | AT1G68170.1 | 30.029 | 343 | 222 | 5 | 18 | 344 | 7 | 347 | 1.14e-44 | 157 |
| Msa0077250 | AT4G28040.1 | 28.152 | 341 | 230 | 6 | 9 | 347 | 3 | 330 | 1.43e-44 | 157 |
| Msa0077250 | AT4G28040.5 | 28.152 | 341 | 230 | 6 | 9 | 347 | 3 | 330 | 1.43e-44 | 157 |
| Msa0077250 | AT4G28040.3 | 28.152 | 341 | 230 | 6 | 9 | 347 | 3 | 330 | 1.43e-44 | 157 |
| Msa0077250 | AT4G28040.4 | 28.152 | 341 | 230 | 6 | 9 | 347 | 3 | 330 | 1.43e-44 | 157 |
| Msa0077250 | AT4G28040.2 | 28.152 | 341 | 230 | 6 | 9 | 347 | 3 | 330 | 1.43e-44 | 157 |
| Msa0077250 | AT3G53210.2 | 35.156 | 256 | 148 | 5 | 88 | 333 | 27 | 274 | 6.64e-44 | 154 |
| Msa0077250 | AT4G01440.3 | 28.333 | 300 | 212 | 2 | 11 | 308 | 7 | 305 | 2.85e-43 | 152 |
| Msa0077250 | AT5G40240.1 | 29.305 | 331 | 226 | 4 | 10 | 334 | 16 | 344 | 3.67e-43 | 153 |
| Msa0077250 | AT5G40240.3 | 29.305 | 331 | 226 | 4 | 10 | 334 | 16 | 344 | 3.67e-43 | 153 |
| Msa0077250 | AT5G40240.2 | 29.305 | 331 | 226 | 4 | 10 | 334 | 30 | 358 | 4.45e-43 | 153 |
| Msa0077250 | AT5G64700.2 | 35.039 | 254 | 155 | 3 | 13 | 257 | 7 | 259 | 7.63e-43 | 149 |
| Msa0077250 | AT3G28050.1 | 29.345 | 351 | 227 | 8 | 1 | 347 | 1 | 334 | 1.01e-42 | 152 |
| Msa0077250 | AT1G25270.1 | 30.499 | 341 | 230 | 4 | 12 | 347 | 1 | 339 | 1.57e-42 | 151 |
| Msa0077250 | AT3G53210.3 | 33.708 | 267 | 156 | 5 | 13 | 273 | 9 | 260 | 3.98e-42 | 147 |
| Msa0077250 | AT3G28130.5 | 31.148 | 244 | 163 | 2 | 96 | 335 | 9 | 251 | 2.09e-41 | 146 |
| Msa0077250 | AT3G28130.1 | 31.148 | 244 | 163 | 2 | 96 | 335 | 9 | 251 | 2.09e-41 | 146 |
| Msa0077250 | AT3G28100.1 | 28.750 | 320 | 221 | 4 | 18 | 332 | 18 | 335 | 4.43e-41 | 147 |
| Msa0077250 | AT5G45370.2 | 28.613 | 346 | 224 | 5 | 15 | 341 | 21 | 362 | 5.54e-41 | 148 |
| Msa0077250 | AT5G45370.4 | 28.613 | 346 | 224 | 5 | 15 | 341 | 21 | 362 | 5.54e-41 | 148 |
| Msa0077250 | AT1G70260.1 | 27.429 | 350 | 233 | 6 | 14 | 347 | 12 | 356 | 1.16e-40 | 147 |
| Msa0077250 | AT5G45370.1 | 28.746 | 327 | 224 | 3 | 15 | 341 | 21 | 338 | 2.95e-40 | 145 |
| Msa0077250 | AT1G43650.2 | 33.333 | 249 | 164 | 2 | 9 | 257 | 2 | 248 | 2.73e-39 | 140 |
| Msa0077250 | AT3G28070.2 | 30.000 | 250 | 168 | 3 | 96 | 339 | 7 | 255 | 3.53e-39 | 140 |
| Msa0077250 | AT3G28070.1 | 30.000 | 250 | 168 | 3 | 96 | 339 | 99 | 347 | 2.68e-38 | 140 |
| Msa0077250 | AT4G01430.2 | 29.221 | 308 | 205 | 5 | 10 | 308 | 5 | 308 | 4.32e-38 | 139 |
| Msa0077250 | AT1G11450.4 | 29.966 | 297 | 205 | 3 | 14 | 308 | 16 | 311 | 7.38e-38 | 138 |
| Msa0077250 | AT1G01070.2 | 32.028 | 281 | 180 | 4 | 59 | 332 | 14 | 290 | 8.36e-38 | 138 |
| Msa0077250 | AT3G30340.2 | 32.530 | 249 | 164 | 2 | 13 | 258 | 10 | 257 | 2.28e-37 | 135 |
| Msa0077250 | AT3G28080.1 | 29.268 | 287 | 191 | 7 | 62 | 339 | 62 | 345 | 1.37e-36 | 135 |
| Msa0077250 | AT3G28080.5 | 28.629 | 248 | 169 | 3 | 99 | 339 | 10 | 256 | 2.61e-36 | 132 |
| Msa0077250 | AT3G28080.7 | 28.629 | 248 | 169 | 3 | 99 | 339 | 10 | 256 | 2.61e-36 | 132 |
| Msa0077250 | AT3G28080.8 | 28.629 | 248 | 169 | 3 | 99 | 339 | 10 | 256 | 2.61e-36 | 132 |
| Msa0077250 | AT3G28080.6 | 28.629 | 248 | 169 | 3 | 99 | 339 | 10 | 256 | 2.61e-36 | 132 |
| Msa0077250 | AT4G24980.1 | 27.575 | 301 | 153 | 5 | 31 | 331 | 4 | 239 | 7.96e-36 | 131 |
| Msa0077250 | AT3G28080.2 | 29.719 | 249 | 165 | 5 | 99 | 339 | 91 | 337 | 1.90e-35 | 132 |
| Msa0077250 | AT4G01450.2 | 29.560 | 318 | 221 | 2 | 11 | 328 | 7 | 321 | 1.97e-35 | 132 |
| Msa0077250 | AT4G01440.5 | 32.243 | 214 | 142 | 2 | 116 | 327 | 4 | 216 | 3.30e-35 | 129 |
| Msa0077250 | AT4G01440.2 | 32.243 | 214 | 142 | 2 | 116 | 327 | 4 | 216 | 3.30e-35 | 129 |
| Msa0077250 | AT1G11450.1 | 31.765 | 255 | 171 | 3 | 95 | 347 | 5 | 258 | 4.24e-35 | 129 |
| Msa0077250 | AT3G45870.1 | 28.571 | 329 | 214 | 5 | 13 | 325 | 11 | 334 | 7.18e-35 | 131 |
| Msa0077250 | AT4G01450.1 | 28.523 | 298 | 210 | 2 | 11 | 308 | 7 | 301 | 1.41e-34 | 130 |
| Msa0077250 | AT4G19185.1 | 27.697 | 343 | 224 | 6 | 10 | 332 | 16 | 354 | 2.94e-34 | 130 |
| Msa0077250 | AT4G15540.1 | 29.275 | 345 | 224 | 7 | 10 | 347 | 13 | 344 | 1.55e-33 | 127 |
| Msa0077250 | AT4G15540.2 | 29.275 | 345 | 224 | 7 | 10 | 347 | 13 | 344 | 1.55e-33 | 127 |
| Msa0077250 | AT1G60050.1 | 26.361 | 349 | 240 | 6 | 14 | 347 | 13 | 359 | 2.10e-33 | 127 |
| Msa0077250 | AT5G47470.1 | 28.197 | 305 | 201 | 7 | 39 | 334 | 55 | 350 | 2.68e-33 | 127 |
| Msa0077250 | AT3G28130.3 | 31.604 | 212 | 140 | 2 | 128 | 335 | 2 | 212 | 3.41e-33 | 123 |
| Msa0077250 | AT5G47470.3 | 28.197 | 305 | 201 | 7 | 39 | 334 | 83 | 378 | 3.54e-33 | 127 |
| Msa0077250 | AT5G47470.2 | 28.197 | 305 | 201 | 7 | 39 | 334 | 83 | 378 | 3.75e-33 | 127 |
| Msa0077250 | AT3G28070.5 | 29.817 | 218 | 146 | 3 | 128 | 339 | 2 | 218 | 1.52e-30 | 116 |
| Msa0077250 | AT3G28070.3 | 29.954 | 217 | 147 | 2 | 96 | 308 | 99 | 314 | 4.16e-30 | 117 |
| Msa0077250 | AT4G01440.4 | 27.935 | 247 | 175 | 2 | 14 | 258 | 10 | 255 | 4.73e-30 | 116 |
| Msa0077250 | AT3G45870.8 | 27.564 | 312 | 205 | 5 | 13 | 308 | 11 | 317 | 2.74e-29 | 115 |
| Msa0077250 | AT4G01450.4 | 30.568 | 229 | 157 | 1 | 11 | 239 | 7 | 233 | 3.84e-29 | 113 |
| Msa0077250 | AT3G28080.9 | 27.854 | 219 | 150 | 3 | 128 | 339 | 2 | 219 | 1.31e-27 | 108 |
| Msa0077250 | AT5G45370.6 | 28.195 | 266 | 168 | 5 | 99 | 345 | 3 | 264 | 7.57e-27 | 107 |
| Msa0077250 | AT5G45370.5 | 28.195 | 266 | 168 | 5 | 99 | 345 | 3 | 264 | 7.57e-27 | 107 |
| Msa0077250 | AT4G19185.2 | 27.907 | 258 | 163 | 5 | 94 | 332 | 23 | 276 | 2.79e-26 | 107 |
| Msa0077250 | AT4G16620.1 | 28.431 | 306 | 213 | 4 | 39 | 339 | 37 | 341 | 9.88e-26 | 106 |
| Msa0077250 | AT3G28130.4 | 27.734 | 256 | 175 | 4 | 10 | 258 | 9 | 261 | 1.21e-25 | 104 |
| Msa0077250 | AT4G01450.3 | 30.093 | 216 | 149 | 1 | 11 | 226 | 7 | 220 | 1.86e-25 | 103 |
| Msa0077250 | AT3G28100.3 | 29.583 | 240 | 163 | 3 | 18 | 252 | 18 | 256 | 2.16e-25 | 103 |
| Msa0077250 | AT4G01430.3 | 31.156 | 199 | 125 | 4 | 142 | 332 | 1 | 195 | 2.04e-23 | 97.1 |
| Msa0077250 | AT3G45870.9 | 28.814 | 236 | 152 | 3 | 13 | 232 | 11 | 246 | 7.24e-21 | 91.3 |
| Msa0077250 | AT3G45870.5 | 28.689 | 244 | 150 | 6 | 98 | 325 | 24 | 259 | 1.59e-19 | 88.2 |
| Msa0077250 | AT5G45370.3 | 27.468 | 233 | 146 | 5 | 128 | 341 | 74 | 302 | 2.04e-19 | 88.2 |
| Msa0077250 | AT4G16620.4 | 29.388 | 245 | 168 | 3 | 99 | 339 | 1 | 244 | 4.57e-19 | 85.9 |
| Msa0077250 | AT4G16620.2 | 29.388 | 245 | 168 | 3 | 99 | 339 | 1 | 244 | 4.57e-19 | 85.9 |
| Msa0077250 | AT3G28080.3 | 24.390 | 287 | 151 | 9 | 62 | 339 | 62 | 291 | 3.35e-16 | 78.6 |
| Msa0077250 | AT3G28100.2 | 27.039 | 233 | 140 | 4 | 18 | 245 | 18 | 225 | 9.04e-16 | 76.6 |
| Msa0077250 | AT3G28080.4 | 22.892 | 249 | 130 | 5 | 98 | 339 | 9 | 202 | 1.11e-15 | 75.5 |
| Msa0077250 | AT3G45870.2 | 30.822 | 146 | 93 | 3 | 183 | 325 | 43 | 183 | 4.99e-15 | 73.9 |
| Msa0077250 | AT3G45870.6 | 27.313 | 227 | 141 | 6 | 98 | 308 | 24 | 242 | 2.84e-14 | 72.0 |
| Msa0077250 | AT3G45870.7 | 27.313 | 227 | 141 | 6 | 98 | 308 | 24 | 242 | 2.84e-14 | 72.0 |
| Msa0077250 | AT3G28060.1 | 33.036 | 112 | 74 | 1 | 197 | 308 | 44 | 154 | 1.11e-12 | 65.5 |
| Msa0077250 | AT4G16620.3 | 25.701 | 214 | 156 | 2 | 39 | 249 | 37 | 250 | 1.89e-12 | 67.4 |
| Msa0077250 | AT3G28130.6 | 25.773 | 194 | 134 | 4 | 18 | 204 | 17 | 207 | 3.27e-12 | 65.5 |
Find 84 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTACATGGATGTGCTTTA+TGG | 0.178951 | 1_2:-54086379 | Msa0077250:CDS |
| AAGCTGACATTTGCTCTCTT+TGG | 0.187148 | 1_2:-54088397 | Msa0077250:CDS |
| TCCCACAAATTTCTCATTAA+AGG | 0.200692 | 1_2:+54087647 | None:intergenic |
| GACTTGTGGTCCACAATATA+TGG | 0.207177 | 1_2:-54086279 | Msa0077250:CDS |
| AGCTGACATTTGCTCTCTTT+GGG | 0.254016 | 1_2:-54088396 | Msa0077250:CDS |
| TATCAATAAGAGTTGGATAA+AGG | 0.279602 | 1_2:-54087591 | Msa0077250:CDS |
| TCATCACATCACTAAACTTA+TGG | 0.281992 | 1_2:-54088833 | Msa0077250:exon |
| AACCCTTCAGCATGGATTAT+AGG | 0.309991 | 1_2:-54086312 | Msa0077250:CDS |
| ACGTACCGGCACGTTGTTGC+CGG | 0.310492 | 1_2:-54088676 | Msa0077250:CDS |
| ATTCTAGCATACTTCGTCTT+TGG | 0.314103 | 1_2:-54086055 | Msa0077250:CDS |
| CAAAATCGCCGTCTGCGTTA+TGG | 0.323107 | 1_2:+54085743 | None:intergenic |
| ATCAATAAGAGTTGGATAAA+GGG | 0.339449 | 1_2:-54087590 | Msa0077250:CDS |
| TTTGGTTGAATATGGATTAG+AGG | 0.351226 | 1_2:+54087623 | None:intergenic |
| CGTACCGGCACGTTGTTGCC+GGG | 0.366736 | 1_2:-54088675 | Msa0077250:CDS |
| AGGTGCCTTTATTGTGATCA+TGG | 0.370068 | 1_2:-54085852 | Msa0077250:CDS |
| TAATGGAGCTGTAAATAAAA+AGG | 0.378497 | 1_2:+54085589 | None:intergenic |
| GGGTTTATATTTGTTGCTGT+GGG | 0.397443 | 1_2:-54085831 | Msa0077250:CDS |
| GATAAAGGGTTCACTTCTTA+CGG | 0.402983 | 1_2:-54087576 | Msa0077250:CDS |
| AAGTATATCCAACTTGGGTT+AGG | 0.404034 | 1_2:+54088758 | None:intergenic |
| TAAACCCATGATCACAATAA+AGG | 0.404622 | 1_2:+54085847 | None:intergenic |
| ACTACATGGATGTGCTTTAT+GGG | 0.405215 | 1_2:-54086378 | Msa0077250:CDS |
| TATTGATGTACATTCTACTA+TGG | 0.410599 | 1_2:-54086144 | Msa0077250:CDS |
| ACGGCCGCGACACGACGTTT+TGG | 0.410783 | 1_2:-54085674 | Msa0077250:three_prime_UTR |
| ACTTGTGGTCCACAATATAT+GGG | 0.415400 | 1_2:-54086278 | Msa0077250:CDS |
| TCTTTATTGCGGTGGTGCTC+AGG | 0.417019 | 1_2:-54088174 | Msa0077250:intron |
| TGGGTTTATATTTGTTGCTG+TGG | 0.435248 | 1_2:-54085832 | Msa0077250:CDS |
| ACCTTTAATGAGAAATTTGT+GGG | 0.440140 | 1_2:-54087648 | Msa0077250:CDS |
| TTCTATATCGTACATTATGC+AGG | 0.442746 | 1_2:-54087534 | Msa0077250:intron |
| AGGAGGTGATGACTAGGATC+TGG | 0.454076 | 1_2:+54085609 | None:intergenic |
| GACCTTTAATGAGAAATTTG+TGG | 0.454162 | 1_2:-54087649 | Msa0077250:CDS |
| TGACAGGGAATTGTTGTTGC+TGG | 0.456734 | 1_2:-54086169 | Msa0077250:intron |
| GTTATACATTGAAGCAAGAA+AGG | 0.457079 | 1_2:+54088216 | None:intergenic |
| AAGAGAGCAAATGTCAGCTT+TGG | 0.457572 | 1_2:+54088400 | None:intergenic |
| CTCAACTATCACTCACTACA+TGG | 0.460336 | 1_2:-54086392 | Msa0077250:CDS |
| TACATTGAAGCAAGAAAGGT+TGG | 0.465776 | 1_2:+54088220 | None:intergenic |
| ATTTCTTCCCAGCGCTAAAA+CGG | 0.470484 | 1_2:+54085713 | None:intergenic |
| GGTGCCTTTATTGTGATCAT+GGG | 0.471527 | 1_2:-54085851 | Msa0077250:CDS |
| CCACCGCAATAAAGAAGGTA+AGG | 0.473101 | 1_2:+54088182 | None:intergenic |
| GGGACCTTGATCTCCTTAGC+TGG | 0.480268 | 1_2:-54087698 | Msa0077250:CDS |
| CTCATGCTCCTAACCCAAGT+TGG | 0.485428 | 1_2:-54088766 | Msa0077250:CDS |
| ACTGAAGCTTCCTTCAATCA+TGG | 0.487850 | 1_2:-54088721 | Msa0077250:CDS |
| ATGTTAAAGTATATCCAACT+TGG | 0.491933 | 1_2:+54088752 | None:intergenic |
| CGTGGCATAGCAAAAGTACT+TGG | 0.499856 | 1_2:-54087719 | Msa0077250:CDS |
| AGAATAGATCTCGAAATTGA+AGG | 0.502333 | 1_2:+54085564 | None:intergenic |
| CTCTCCAGAAAGTACGCAAA+AGG | 0.505275 | 1_2:+54088640 | None:intergenic |
| TTCCCTTACCTTCTTTATTG+CGG | 0.508461 | 1_2:-54088185 | Msa0077250:CDS |
| GTTTATATTTGTTGCTGTGG+GGG | 0.509098 | 1_2:-54085829 | Msa0077250:CDS |
| GTGCTTCTATCAATAAGAGT+TGG | 0.517945 | 1_2:-54087598 | Msa0077250:CDS |
| AACACCAGCTAAGGAGATCA+AGG | 0.524038 | 1_2:+54087694 | None:intergenic |
| GTAGTGAGTGATAGTTGAGC+AGG | 0.525003 | 1_2:+54086396 | None:intergenic |
| CCTTACCTTCTTTATTGCGG+TGG | 0.533158 | 1_2:-54088182 | Msa0077250:CDS |
| CTTATGTTTATGTTACGTAC+CGG | 0.536136 | 1_2:-54088690 | Msa0077250:CDS |
| CGGTACGTAACATAAACATA+AGG | 0.545419 | 1_2:+54088691 | None:intergenic |
| GTTAGGAGCATGAGCAGGTG+TGG | 0.546783 | 1_2:+54088775 | None:intergenic |
| GGTTTATATTTGTTGCTGTG+GGG | 0.547709 | 1_2:-54085830 | Msa0077250:CDS |
| TCTCGAAATTGAAGGAGTAA+TGG | 0.548712 | 1_2:+54085572 | None:intergenic |
| AATCCTATAATCCATGCTGA+AGG | 0.553659 | 1_2:+54086309 | None:intergenic |
| AGGTCCTTTGTATAATGTCA+TGG | 0.556570 | 1_2:+54087667 | None:intergenic |
| ATACTTAACCCCATATATTG+TGG | 0.557597 | 1_2:+54086269 | None:intergenic |
| GTACCGGCACGTTGTTGCCG+GGG | 0.561621 | 1_2:-54088674 | Msa0077250:CDS |
| ACCAAAATTAAGAGAGTGGG+TGG | 0.563651 | 1_2:+54085538 | None:intergenic |
| TGTTAAAGTATATCCAACTT+GGG | 0.563922 | 1_2:+54088753 | None:intergenic |
| GAGCACCACCGCAATAAAGA+AGG | 0.564421 | 1_2:+54088177 | None:intergenic |
| CATGGTCATAACACCAGCTA+AGG | 0.566284 | 1_2:+54087685 | None:intergenic |
| CAACCCCGGCAACAACGTGC+CGG | 0.573460 | 1_2:+54088671 | None:intergenic |
| AGGACTCATTCCATGATTGA+AGG | 0.576140 | 1_2:+54088711 | None:intergenic |
| ATCGCCGTCTGCGTTATGGA+TGG | 0.578491 | 1_2:+54085747 | None:intergenic |
| GCTGACATTTGCTCTCTTTG+GGG | 0.581077 | 1_2:-54088395 | Msa0077250:CDS |
| TGTGGCTTGAAATCTCTAAG+AGG | 0.590235 | 1_2:+54088793 | None:intergenic |
| CTTGGGTTAGGAGCATGAGC+AGG | 0.592059 | 1_2:+54088770 | None:intergenic |
| AAAATTAAGAGAGTGGGTGG+AGG | 0.593964 | 1_2:+54085541 | None:intergenic |
| TAGGATTCAACATTGACTTG+TGG | 0.601279 | 1_2:-54086293 | Msa0077250:CDS |
| AGGTTGGAGAAGTATACTGC+AGG | 0.609030 | 1_2:+54088236 | None:intergenic |
| ATCCTATAATCCATGCTGAA+GGG | 0.616790 | 1_2:+54086310 | None:intergenic |
| AAAAGGAAACATCACAACCC+CGG | 0.621141 | 1_2:+54088657 | None:intergenic |
| GGGGAAAGAAGGTGACAAAG+AGG | 0.625341 | 1_2:-54085810 | Msa0077250:CDS |
| CTTGTGGTCCACAATATATG+GGG | 0.626495 | 1_2:-54086277 | Msa0077250:intron |
| AACGTAATAACCCTTCAGCA+TGG | 0.629718 | 1_2:-54086320 | Msa0077250:CDS |
| GCGACCAAAACGTCGTGTCG+CGG | 0.635342 | 1_2:+54085670 | None:intergenic |
| CACCGCAATAAAGAAGGTAA+GGG | 0.636753 | 1_2:+54088183 | None:intergenic |
| GTGGCATAGCAAAAGTACTT+GGG | 0.649319 | 1_2:-54087718 | Msa0077250:CDS |
| ATGACCATCCATAACGCAGA+CGG | 0.654527 | 1_2:-54085751 | Msa0077250:exon |
| ATGACCATGACATTATACAA+AGG | 0.691521 | 1_2:-54087671 | Msa0077250:CDS |
| GTTGATCTTCGAAATCCACG+TGG | 0.775716 | 1_2:-54087737 | Msa0077250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACTAAAAATATATCAA+AGG | + | chr1_2:54085853-54085872 | None:intergenic | 10.0% |
| !!! | TTTTTTAAAAAAAAAAAAGC+AGG | - | chr1_2:54086056-54086075 | Msa0077250:CDS | 10.0% |
| !!! | TAATTTTAAAATATTATTGC+AGG | - | chr1_2:54086101-54086120 | Msa0077250:CDS | 10.0% |
| !!! | GCTTATATATAAAAATATTT+TGG | + | chr1_2:54087532-54087551 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTATTTGATTTTA+GGG | + | chr1_2:54087665-54087684 | None:intergenic | 10.0% |
| !!! | TTTAATCTTAAAATTTTTGG+AGG | - | chr1_2:54086502-54086521 | Msa0077250:intron | 15.0% |
| !! | AAAAAGTTGTGTAATTTAAT+TGG | - | chr1_2:54087023-54087042 | Msa0077250:intron | 15.0% |
| !!! | AAATAAGTATTTTTAGGATA+TGG | + | chr1_2:54087237-54087256 | None:intergenic | 15.0% |
| !! | ATATCCTAAAAATACTTATT+TGG | - | chr1_2:54087236-54087255 | Msa0077250:intron | 15.0% |
| !!! | TTAAAATAAGCTTTTACTTT+TGG | - | chr1_2:54087333-54087352 | Msa0077250:intron | 15.0% |
| !! | AAGTTTCTCATATAAAATAT+AGG | - | chr1_2:54087421-54087440 | Msa0077250:intron | 15.0% |
| !! | AGTTTCTCATATAAAATATA+GGG | - | chr1_2:54087422-54087441 | Msa0077250:intron | 15.0% |
| !!! | CATTAGTTTTATTTGATTTT+AGG | + | chr1_2:54087666-54087685 | None:intergenic | 15.0% |
| !! | TATGTTCATAGTTTAAATAA+TGG | - | chr1_2:54087917-54087936 | Msa0077250:intron | 15.0% |
| !!! | AAATTGTGTTCTTTTTTTTT+GGG | + | chr1_2:54088763-54088782 | None:intergenic | 15.0% |
| !!! | ATACTAGTTAATTTTACGTT+CGG | + | chr1_2:54085820-54085839 | None:intergenic | 20.0% |
| !! | ACTAAAAATATATCAAAGGT+CGG | + | chr1_2:54085849-54085868 | None:intergenic | 20.0% |
| !!! | CAATTTTATAATTTTTGTCG+AGG | - | chr1_2:54086387-54086406 | Msa0077250:CDS | 20.0% |
| !! | ATGCTAATGAGTAATTTAAA+AGG | - | chr1_2:54086918-54086937 | Msa0077250:intron | 20.0% |
| !! | TGCTAATGAGTAATTTAAAA+GGG | - | chr1_2:54086919-54086938 | Msa0077250:intron | 20.0% |
| !!! | TTATGAAAACTTGTTTGTTT+TGG | + | chr1_2:54087004-54087023 | None:intergenic | 20.0% |
| !! | AAATAGTAGAAAATCTTCAT+TGG | - | chr1_2:54087140-54087159 | Msa0077250:intron | 20.0% |
| !!! | ACATCCAAATAAGTATTTTT+AGG | + | chr1_2:54087243-54087262 | None:intergenic | 20.0% |
| !! | TGTTTGCATAAAACATATAA+TGG | + | chr1_2:54087267-54087286 | None:intergenic | 20.0% |
| !!! | ATTTTAACTTACTCTTAAAC+CGG | + | chr1_2:54087320-54087339 | None:intergenic | 20.0% |
| !!! | ATCATTTTGCTTTGTTTTTT+TGG | + | chr1_2:54087607-54087626 | None:intergenic | 20.0% |
| !!! | TTTGGTGAAAAACTTTATTT+GGG | - | chr1_2:54088355-54088374 | Msa0077250:intron | 20.0% |
| !! | AATATCACAGAAAAATGTTA+CGG | - | chr1_2:54088699-54088718 | Msa0077250:CDS | 20.0% |
| !!! | GAAATTGTGTTCTTTTTTTT+TGG | + | chr1_2:54088764-54088783 | None:intergenic | 20.0% |
| ! | TGTTAAAGTATATCCAACTT+GGG | + | chr1_2:54085642-54085661 | None:intergenic | 25.0% |
| ! | ATGTTAAAGTATATCCAACT+TGG | + | chr1_2:54085643-54085662 | None:intergenic | 25.0% |
| ! | CTAAAAATATATCAAAGGTC+GGG | + | chr1_2:54085848-54085867 | None:intergenic | 25.0% |
| !! | ATTTTTGTTCTTTCAGTGTT+AGG | - | chr1_2:54086022-54086041 | Msa0077250:intron | 25.0% |
| !! | TTTTTGTTCTTTCAGTGTTA+GGG | - | chr1_2:54086023-54086042 | Msa0077250:intron | 25.0% |
| ! | ACCTTTAATGAGAAATTTGT+GGG | - | chr1_2:54086744-54086763 | Msa0077250:intron | 25.0% |
| !!! | TTATTGATAGAAGCACTTTT+TGG | + | chr1_2:54086790-54086809 | None:intergenic | 25.0% |
| ! | TATCAATAAGAGTTGGATAA+AGG | - | chr1_2:54086801-54086820 | Msa0077250:intron | 25.0% |
| ! | ATCAATAAGAGTTGGATAAA+GGG | - | chr1_2:54086802-54086821 | Msa0077250:intron | 25.0% |
| !!! | TTTTAACTTACTCTTAAACC+GGG | + | chr1_2:54087319-54087338 | None:intergenic | 25.0% |
| ! | AACATAGTCCACTAATTTAA+TGG | - | chr1_2:54087371-54087390 | Msa0077250:intron | 25.0% |
| ! | TGATTCTTATTGCTTGTAAT+TGG | - | chr1_2:54087944-54087963 | Msa0077250:intron | 25.0% |
| ! | TATCAATCATTATCAATGAC+AGG | - | chr1_2:54088207-54088226 | Msa0077250:CDS | 25.0% |
| ! | ATCAATCATTATCAATGACA+GGG | - | chr1_2:54088208-54088227 | Msa0077250:CDS | 25.0% |
| ! | TATTGATGTACATTCTACTA+TGG | - | chr1_2:54088248-54088267 | Msa0077250:CDS | 25.0% |
| ! | CTTTGGTGAAAAACTTTATT+TGG | - | chr1_2:54088354-54088373 | Msa0077250:intron | 25.0% |
| !! | GTTTAACTTTGATACATTGT+CGG | + | chr1_2:54088399-54088418 | None:intergenic | 25.0% |
| ! | TAATGGAGCTGTAAATAAAA+AGG | + | chr1_2:54088806-54088825 | None:intergenic | 25.0% |
| TCATCACATCACTAAACTTA+TGG | - | chr1_2:54085559-54085578 | Msa0077250:three_prime_UTR | 30.0% | |
| CTTATGTTTATGTTACGTAC+CGG | - | chr1_2:54085702-54085721 | Msa0077250:three_prime_UTR | 30.0% | |
| GTTATACATTGAAGCAAGAA+AGG | + | chr1_2:54086179-54086198 | None:intergenic | 30.0% | |
| AGAGACTAAAAGTGATTACA+TGG | + | chr1_2:54086314-54086333 | None:intergenic | 30.0% | |
| ATGACCATGACATTATACAA+AGG | - | chr1_2:54086721-54086740 | Msa0077250:intron | 30.0% | |
| GACCTTTAATGAGAAATTTG+TGG | - | chr1_2:54086743-54086762 | Msa0077250:intron | 30.0% | |
| TCCCACAAATTTCTCATTAA+AGG | + | chr1_2:54086748-54086767 | None:intergenic | 30.0% | |
| !! | TTTGGTTGAATATGGATTAG+AGG | + | chr1_2:54086772-54086791 | None:intergenic | 30.0% |
| !!! | AAGCACTTTTTGGTTGAATA+TGG | + | chr1_2:54086780-54086799 | None:intergenic | 30.0% |
| TTCTATATCGTACATTATGC+AGG | - | chr1_2:54086858-54086877 | Msa0077250:intron | 30.0% | |
| !! | AATTAGTGGACTATGTTAGA+GGG | + | chr1_2:54087368-54087387 | None:intergenic | 30.0% |
| !! | AAATTAGTGGACTATGTTAG+AGG | + | chr1_2:54087369-54087388 | None:intergenic | 30.0% |
| AGACTAGACCATTAAATTAG+TGG | + | chr1_2:54087382-54087401 | None:intergenic | 30.0% | |
| AAAAAATAGAACGTGTGAGA+AGG | + | chr1_2:54087470-54087489 | None:intergenic | 30.0% | |
| TGACTTGAATCACAAAAAGA+AGG | - | chr1_2:54087809-54087828 | Msa0077250:intron | 30.0% | |
| GACTTGAATCACAAAAAGAA+GGG | - | chr1_2:54087810-54087829 | Msa0077250:intron | 30.0% | |
| CACAAAAAGAAGGGTTATAA+TGG | - | chr1_2:54087819-54087838 | Msa0077250:intron | 30.0% | |
| TTGCTTGTAATTGGATATTC+AGG | - | chr1_2:54087953-54087972 | Msa0077250:intron | 30.0% | |
| ATACTTAACCCCATATATTG+TGG | + | chr1_2:54088126-54088145 | None:intergenic | 30.0% | |
| TTAAACACTGTCACAAAAAC+TGG | + | chr1_2:54088292-54088311 | None:intergenic | 30.0% | |
| TGATGCTGAAAATTGATGAA+AGG | + | chr1_2:54088519-54088538 | None:intergenic | 30.0% | |
| ! | TCATCAATTTTCAGCATCAT+AGG | - | chr1_2:54088520-54088539 | Msa0077250:intron | 30.0% |
| TAAACCCATGATCACAATAA+AGG | + | chr1_2:54088548-54088567 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTTTGGGCTGTAA+TGG | + | chr1_2:54088754-54088773 | None:intergenic | 30.0% |
| AGAATAGATCTCGAAATTGA+AGG | + | chr1_2:54088831-54088850 | None:intergenic | 30.0% | |
| AAGTATATCCAACTTGGGTT+AGG | + | chr1_2:54085637-54085656 | None:intergenic | 35.0% | |
| CGGTACGTAACATAAACATA+AGG | + | chr1_2:54085704-54085723 | None:intergenic | 35.0% | |
| TCAAATTCTTAGTGCGTGTT+TGG | - | chr1_2:54085794-54085813 | Msa0077250:CDS | 35.0% | |
| TACATTGAAGCAAGAAAGGT+TGG | + | chr1_2:54086175-54086194 | None:intergenic | 35.0% | |
| TTCCCTTACCTTCTTTATTG+CGG | - | chr1_2:54086207-54086226 | Msa0077250:intron | 35.0% | |
| CATAGAGTTGACTAAAATGC+AGG | - | chr1_2:54086623-54086642 | Msa0077250:intron | 35.0% | |
| AGGTCCTTTGTATAATGTCA+TGG | + | chr1_2:54086728-54086747 | None:intergenic | 35.0% | |
| GTGCTTCTATCAATAAGAGT+TGG | - | chr1_2:54086794-54086813 | Msa0077250:intron | 35.0% | |
| GATAAAGGGTTCACTTCTTA+CGG | - | chr1_2:54086816-54086835 | Msa0077250:intron | 35.0% | |
| ATGCTTAACCAATGCTCTTA+GGG | + | chr1_2:54086981-54087000 | None:intergenic | 35.0% | |
| GTGTATAAAGAAAGTAGACC+CGG | - | chr1_2:54087298-54087317 | Msa0077250:intron | 35.0% | |
| ACTACATGGATGTGCTTTAT+GGG | - | chr1_2:54088014-54088033 | Msa0077250:intron | 35.0% | |
| ATCCTATAATCCATGCTGAA+GGG | + | chr1_2:54088085-54088104 | None:intergenic | 35.0% | |
| AATCCTATAATCCATGCTGA+AGG | + | chr1_2:54088086-54088105 | None:intergenic | 35.0% | |
| !! | TAGGATTCAACATTGACTTG+TGG | - | chr1_2:54088099-54088118 | Msa0077250:intron | 35.0% |
| ACTTGTGGTCCACAATATAT+GGG | - | chr1_2:54088114-54088133 | Msa0077250:intron | 35.0% | |
| TATGGTGCACTGAGAAAAAA+GGG | - | chr1_2:54088266-54088285 | Msa0077250:CDS | 35.0% | |
| CCACAAAAATGGTACAAAGA+GGG | + | chr1_2:54088315-54088334 | None:intergenic | 35.0% | |
| TGCTAGAATTGCCACAAAAA+TGG | + | chr1_2:54088326-54088345 | None:intergenic | 35.0% | |
| ATTCTAGCATACTTCGTCTT+TGG | - | chr1_2:54088337-54088356 | Msa0077250:intron | 35.0% | |
| ! | GTGAAAAACTTTATTTGGGC+AGG | - | chr1_2:54088359-54088378 | Msa0077250:intron | 35.0% |
| TACTATGAATGCGTAGTTAG+TGG | - | chr1_2:54088434-54088453 | Msa0077250:intron | 35.0% | |
| ! | TGGGTTTATATTTGTTGCTG+TGG | - | chr1_2:54088560-54088579 | Msa0077250:intron | 35.0% |
| ! | GGGTTTATATTTGTTGCTGT+GGG | - | chr1_2:54088561-54088580 | Msa0077250:intron | 35.0% |
| ! | GGTTTATATTTGTTGCTGTG+GGG | - | chr1_2:54088562-54088581 | Msa0077250:intron | 35.0% |
| ! | GTTTATATTTGTTGCTGTGG+GGG | - | chr1_2:54088563-54088582 | Msa0077250:intron | 35.0% |
| ATAAAAAGGAGGTGATGACT+AGG | + | chr1_2:54088792-54088811 | None:intergenic | 35.0% | |
| TGGAGCTGTAAATAAAAAGG+AGG | + | chr1_2:54088803-54088822 | None:intergenic | 35.0% | |
| TCTCGAAATTGAAGGAGTAA+TGG | + | chr1_2:54088823-54088842 | None:intergenic | 35.0% | |
| TGTGGCTTGAAATCTCTAAG+AGG | + | chr1_2:54085602-54085621 | None:intergenic | 40.0% | |
| ACTGAAGCTTCCTTCAATCA+TGG | - | chr1_2:54085671-54085690 | Msa0077250:three_prime_UTR | 40.0% | |
| AGGACTCATTCCATGATTGA+AGG | + | chr1_2:54085684-54085703 | None:intergenic | 40.0% | |
| AAAAGGAAACATCACAACCC+CGG | + | chr1_2:54085738-54085757 | None:intergenic | 40.0% | |
| ! | GTTTCCTTTTGCGTACTTTC+TGG | - | chr1_2:54085748-54085767 | Msa0077250:exon | 40.0% |
| AAGAGAGCAAATGTCAGCTT+TGG | + | chr1_2:54085995-54086014 | None:intergenic | 40.0% | |
| AAGCTGACATTTGCTCTCTT+TGG | - | chr1_2:54085995-54086014 | Msa0077250:intron | 40.0% | |
| AGCTGACATTTGCTCTCTTT+GGG | - | chr1_2:54085996-54086015 | Msa0077250:intron | 40.0% | |
| CACCGCAATAAAGAAGGTAA+GGG | + | chr1_2:54086212-54086231 | None:intergenic | 40.0% | |
| ! | ATTTTTGTCGAGGCTGAAGT+TGG | - | chr1_2:54086397-54086416 | Msa0077250:CDS | 40.0% |
| !! | GTGGCATAGCAAAAGTACTT+GGG | - | chr1_2:54086674-54086693 | Msa0077250:intron | 40.0% |
| GATGCTTAACCAATGCTCTT+AGG | + | chr1_2:54086982-54087001 | None:intergenic | 40.0% | |
| !! | TGTCTTCAGTGCATTGGTTA+AGG | + | chr1_2:54087098-54087117 | None:intergenic | 40.0% |
| ! | ACTATGTTAGAGGGTGGATT+AGG | + | chr1_2:54087359-54087378 | None:intergenic | 40.0% |
| TCGTGTCATAGTCGAAAATC+TGG | + | chr1_2:54087773-54087792 | None:intergenic | 40.0% | |
| AAATGTAGGGGCCAATTTGA+GGG | + | chr1_2:54087867-54087886 | None:intergenic | 40.0% | |
| AAAATGTAGGGGCCAATTTG+AGG | + | chr1_2:54087868-54087887 | None:intergenic | 40.0% | |
| !! | GCCCCTACATTTTAGAAATG+CGG | - | chr1_2:54087875-54087894 | Msa0077250:intron | 40.0% |
| !! | CCCGCATTTCTAAAATGTAG+GGG | + | chr1_2:54087879-54087898 | None:intergenic | 40.0% |
| !! | CCCCTACATTTTAGAAATGC+GGG | - | chr1_2:54087876-54087895 | Msa0077250:intron | 40.0% |
| !! | CCCCGCATTTCTAAAATGTA+GGG | + | chr1_2:54087880-54087899 | None:intergenic | 40.0% |
| !! | CCCTACATTTTAGAAATGCG+GGG | - | chr1_2:54087877-54087896 | Msa0077250:intron | 40.0% |
| !! | ACCCCGCATTTCTAAAATGT+AGG | + | chr1_2:54087881-54087900 | None:intergenic | 40.0% |
| CTCAACTATCACTCACTACA+TGG | - | chr1_2:54088000-54088019 | Msa0077250:intron | 40.0% | |
| CACTACATGGATGTGCTTTA+TGG | - | chr1_2:54088013-54088032 | Msa0077250:intron | 40.0% | |
| AACGTAATAACCCTTCAGCA+TGG | - | chr1_2:54088072-54088091 | Msa0077250:intron | 40.0% | |
| ! | AACCCTTCAGCATGGATTAT+AGG | - | chr1_2:54088080-54088099 | Msa0077250:intron | 40.0% |
| GACTTGTGGTCCACAATATA+TGG | - | chr1_2:54088113-54088132 | Msa0077250:intron | 40.0% | |
| CTTGTGGTCCACAATATATG+GGG | - | chr1_2:54088115-54088134 | Msa0077250:intron | 40.0% | |
| CTATGGTGCACTGAGAAAAA+AGG | - | chr1_2:54088265-54088284 | Msa0077250:CDS | 40.0% | |
| !! | CCCTCTTTGTACCATTTTTG+TGG | - | chr1_2:54088312-54088331 | Msa0077250:intron | 40.0% |
| GCCACAAAAATGGTACAAAG+AGG | + | chr1_2:54088316-54088335 | None:intergenic | 40.0% | |
| AGGTGCCTTTATTGTGATCA+TGG | - | chr1_2:54088540-54088559 | Msa0077250:intron | 40.0% | |
| GGTGCCTTTATTGTGATCAT+GGG | - | chr1_2:54088541-54088560 | Msa0077250:intron | 40.0% | |
| ATTTCTTCCCAGCGCTAAAA+CGG | + | chr1_2:54088682-54088701 | None:intergenic | 40.0% | |
| ! | CTCTCCAGAAAGTACGCAAA+AGG | + | chr1_2:54085755-54085774 | None:intergenic | 45.0% |
| !! | CTTTTGCGTACTTTCTGGAG+AGG | - | chr1_2:54085753-54085772 | Msa0077250:exon | 45.0% |
| GCTGACATTTGCTCTCTTTG+GGG | - | chr1_2:54085997-54086016 | Msa0077250:intron | 45.0% | |
| ! | AGGTTGGAGAAGTATACTGC+AGG | + | chr1_2:54086159-54086178 | None:intergenic | 45.0% |
| CCACCGCAATAAAGAAGGTA+AGG | + | chr1_2:54086213-54086232 | None:intergenic | 45.0% | |
| CCTTACCTTCTTTATTGCGG+TGG | - | chr1_2:54086210-54086229 | Msa0077250:intron | 45.0% | |
| GTTGATCTTCGAAATCCACG+TGG | - | chr1_2:54086655-54086674 | Msa0077250:intron | 45.0% | |
| !! | AGTACTTTTGCTATGCCACG+TGG | + | chr1_2:54086673-54086692 | None:intergenic | 45.0% |
| !! | CGTGGCATAGCAAAAGTACT+TGG | - | chr1_2:54086673-54086692 | Msa0077250:intron | 45.0% |
| AACACCAGCTAAGGAGATCA+AGG | + | chr1_2:54086701-54086720 | None:intergenic | 45.0% | |
| CATGGTCATAACACCAGCTA+AGG | + | chr1_2:54086710-54086729 | None:intergenic | 45.0% | |
| AACCAATGCACTGAAGACAC+TGG | - | chr1_2:54087099-54087118 | Msa0077250:intron | 45.0% | |
| AACCAGTGTCTTCAGTGCAT+TGG | + | chr1_2:54087104-54087123 | None:intergenic | 45.0% | |
| !! | TAGTGGACTATGTTAGAGGG+TGG | + | chr1_2:54087365-54087384 | None:intergenic | 45.0% |
| AGAACGTGTGAGAAGGTCAT+TGG | + | chr1_2:54087463-54087482 | None:intergenic | 45.0% | |
| CTTGAACTGACCCCTCAAAT+TGG | - | chr1_2:54087853-54087872 | Msa0077250:intron | 45.0% | |
| AATGTAGGGGCCAATTTGAG+GGG | + | chr1_2:54087866-54087885 | None:intergenic | 45.0% | |
| GTAGTGAGTGATAGTTGAGC+AGG | + | chr1_2:54087999-54088018 | None:intergenic | 45.0% | |
| ! | TGACAGGGAATTGTTGTTGC+TGG | - | chr1_2:54088223-54088242 | Msa0077250:CDS | 45.0% |
| ATGACCATCCATAACGCAGA+CGG | - | chr1_2:54088641-54088660 | Msa0077250:CDS | 45.0% | |
| !! | GCAGACGGCGATTTTGTTAT+TGG | - | chr1_2:54088656-54088675 | Msa0077250:CDS | 45.0% |
| !! | TTATTGGCCGTTTTAGCGCT+GGG | - | chr1_2:54088672-54088691 | Msa0077250:CDS | 45.0% |
| !!! | ATATTTAATCTTAAAATTTT+TGG | - | chr1_2:54086499-54086518 | Msa0077250:intron | 5.0% |
| CTCATGCTCCTAACCCAAGT+TGG | - | chr1_2:54085626-54085645 | Msa0077250:three_prime_UTR | 50.0% | |
| GAGCACCACCGCAATAAAGA+AGG | + | chr1_2:54086218-54086237 | None:intergenic | 50.0% | |
| TCTTTATTGCGGTGGTGCTC+AGG | - | chr1_2:54086218-54086237 | Msa0077250:intron | 50.0% | |
| ! | AACCAGTGCCCTAAGAGCAT+TGG | - | chr1_2:54086970-54086989 | Msa0077250:intron | 50.0% |
| AACCAATGCTCTTAGGGCAC+TGG | + | chr1_2:54086975-54086994 | None:intergenic | 50.0% | |
| TTGTTGCTGTGGGGGAAAGA+AGG | - | chr1_2:54088571-54088590 | Msa0077250:intron | 50.0% | |
| GGGGAAAGAAGGTGACAAAG+AGG | - | chr1_2:54088582-54088601 | Msa0077250:intron | 50.0% | |
| CAAAATCGCCGTCTGCGTTA+TGG | + | chr1_2:54088652-54088671 | None:intergenic | 50.0% | |
| !! | GTTATTGGCCGTTTTAGCGC+TGG | - | chr1_2:54088671-54088690 | Msa0077250:CDS | 50.0% |
| AGGAGGTGATGACTAGGATC+TGG | + | chr1_2:54088786-54088805 | None:intergenic | 50.0% | |
| ! | GTTAGGAGCATGAGCAGGTG+TGG | + | chr1_2:54085620-54085639 | None:intergenic | 55.0% |
| ! | CTTGGGTTAGGAGCATGAGC+AGG | + | chr1_2:54085625-54085644 | None:intergenic | 55.0% |
| GGGACCTTGATCTCCTTAGC+TGG | - | chr1_2:54086694-54086713 | Msa0077250:intron | 55.0% | |
| ATCGCCGTCTGCGTTATGGA+TGG | + | chr1_2:54088648-54088667 | None:intergenic | 55.0% | |
| ! | ACGTACCGGCACGTTGTTGC+CGG | - | chr1_2:54085716-54085735 | Msa0077250:three_prime_UTR | 60.0% |
| GCGACCAAAACGTCGTGTCG+CGG | + | chr1_2:54088725-54088744 | None:intergenic | 60.0% | |
| ! | CGTACCGGCACGTTGTTGCC+GGG | - | chr1_2:54085717-54085736 | Msa0077250:three_prime_UTR | 65.0% |
| ! | GTACCGGCACGTTGTTGCCG+GGG | - | chr1_2:54085718-54085737 | Msa0077250:three_prime_UTR | 65.0% |
| CAACCCCGGCAACAACGTGC+CGG | + | chr1_2:54085724-54085743 | None:intergenic | 65.0% | |
| ! | ACGGCCGCGACACGACGTTT+TGG | - | chr1_2:54088718-54088737 | Msa0077250:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54085551 | 54088863 | 54085551 | ID=Msa0077250;Name=Msa0077250 |
| chr1_2 | mRNA | 54085551 | 54088863 | 54085551 | ID=Msa0077250-mRNA-1;Parent=Msa0077250;Name=Msa0077250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=27|1|1|1|1|1|7|209|348 |
| chr1_2 | exon | 54085551 | 54085880 | 54085551 | ID=Msa0077250-mRNA-1:exon:16669;Parent=Msa0077250-mRNA-1 |
| chr1_2 | exon | 54086034 | 54086185 | 54086034 | ID=Msa0077250-mRNA-1:exon:16668;Parent=Msa0077250-mRNA-1 |
| chr1_2 | exon | 54086278 | 54086439 | 54086278 | ID=Msa0077250-mRNA-1:exon:16667;Parent=Msa0077250-mRNA-1 |
| chr1_2 | exon | 54087535 | 54087769 | 54087535 | ID=Msa0077250-mRNA-1:exon:16666;Parent=Msa0077250-mRNA-1 |
| chr1_2 | exon | 54088175 | 54088291 | 54088175 | ID=Msa0077250-mRNA-1:exon:16665;Parent=Msa0077250-mRNA-1 |
| chr1_2 | exon | 54088370 | 54088432 | 54088370 | ID=Msa0077250-mRNA-1:exon:16664;Parent=Msa0077250-mRNA-1 |
| chr1_2 | exon | 54088640 | 54088863 | 54088640 | ID=Msa0077250-mRNA-1:exon:16663;Parent=Msa0077250-mRNA-1 |
| chr1_2 | five_prime_UTR | 54088837 | 54088863 | 54088837 | ID=Msa0077250-mRNA-1:five_prime_utr;Parent=Msa0077250-mRNA-1 |
| chr1_2 | CDS | 54088640 | 54088836 | 54088640 | ID=Msa0077250-mRNA-1:cds;Parent=Msa0077250-mRNA-1 |
| chr1_2 | CDS | 54088370 | 54088432 | 54088370 | ID=Msa0077250-mRNA-1:cds;Parent=Msa0077250-mRNA-1 |
| chr1_2 | CDS | 54088175 | 54088291 | 54088175 | ID=Msa0077250-mRNA-1:cds;Parent=Msa0077250-mRNA-1 |
| chr1_2 | CDS | 54087535 | 54087769 | 54087535 | ID=Msa0077250-mRNA-1:cds;Parent=Msa0077250-mRNA-1 |
| chr1_2 | CDS | 54086278 | 54086439 | 54086278 | ID=Msa0077250-mRNA-1:cds;Parent=Msa0077250-mRNA-1 |
| chr1_2 | CDS | 54086034 | 54086185 | 54086034 | ID=Msa0077250-mRNA-1:cds;Parent=Msa0077250-mRNA-1 |
| chr1_2 | CDS | 54085760 | 54085880 | 54085760 | ID=Msa0077250-mRNA-1:cds;Parent=Msa0077250-mRNA-1 |
| chr1_2 | three_prime_UTR | 54085551 | 54085759 | 54085551 | ID=Msa0077250-mRNA-1:three_prime_utr;Parent=Msa0077250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
