AlfalfaGEDB | Msa0628190

M. sativa cultivar zhongmu-4 / Msa0628190

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628190	XP_013454718.1	95.556	315	14	0	1	315	1	315	0.0	631

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628190	sp\|Q945B6\|AOP1L_ARATH	54.313	313	132	4	8	314	13	320	1.35e-123	359

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628190	A0A072UG76	95.556	315	14	0	1	315	1	315	0.0	631

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0074620	Msa0628190	0.805046	1.612685e-49	-8.615850e-47
Msa0120450	Msa0628190	0.802507	5.429854e-49	-8.615850e-47
Msa0163690	Msa0628190	0.808621	2.831319e-50	-8.615850e-47
Msa0206370	Msa0628190	0.834725	2.538162e-56	-8.615850e-47
Msa0244310	Msa0628190	0.829037	6.439723e-55	-8.615850e-47
Msa0282830	Msa0628190	0.810600	1.063453e-50	-8.615850e-47
Msa0335340	Msa0628190	0.802165	6.384563e-49	-8.615850e-47
Msa0336430	Msa0628190	0.811672	6.228528e-51	-8.615850e-47
Msa0336460	Msa0628190	0.822604	2.167669e-53	-8.615850e-47
Msa0356240	Msa0628190	0.812324	4.488911e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628190	MtrunA17_Chr4g0004061	95.556	315	14	0	1	315	1	315	0.0	631
Msa0628190	MtrunA17_Chr4g0004071	83.492	315	51	1	1	315	1	314	0.0	557
Msa0628190	MtrunA17_Chr7g0256741	37.618	319	192	6	1	315	1	316	4.27e-78	241
Msa0628190	MtrunA17_Chr3g0138351	36.677	319	187	9	1	308	1	315	3.01e-65	207
Msa0628190	MtrunA17_Chr1g0148781	36.364	308	180	8	1	296	1	304	5.14e-65	207
Msa0628190	MtrunA17_Chr4g0009541	35.016	317	193	10	1	308	1	313	6.53e-58	189
Msa0628190	MtrunA17_Chr4g0009561	33.546	313	197	7	4	307	2	312	2.46e-57	187
Msa0628190	MtrunA17_Chr8g0348951	30.164	305	197	7	9	307	10	304	1.21e-36	134
Msa0628190	MtrunA17_Chr7g0247741	29.310	290	194	7	35	315	30	317	4.03e-33	124
Msa0628190	MtrunA17_Chr1g0184151	26.645	304	206	7	9	305	38	331	6.04e-31	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628190	AT1G52820.1	65.831	319	103	3	1	315	1	317	1.78e-160	450
Msa0628190	AT4G03070.1	53.503	314	134	4	8	314	13	321	8.82e-123	355
Msa0628190	AT1G52820.2	63.445	238	81	3	1	234	1	236	6.70e-109	317
Msa0628190	AT1G28030.1	48.089	314	152	6	9	315	13	322	1.40e-98	293
Msa0628190	AT1G52790.1	43.087	311	174	2	6	315	2	310	5.88e-96	286
Msa0628190	AT1G52800.1	44.051	311	170	3	6	315	7	314	1.73e-94	283
Msa0628190	AT1G52810.1	45.659	311	134	4	8	315	11	289	6.04e-91	273
Msa0628190	AT1G80320.1	36.503	326	188	7	1	315	1	318	1.59e-67	214
Msa0628190	AT1G15540.2	36.196	326	190	8	1	315	4	322	5.57e-60	195
Msa0628190	AT1G15540.1	36.196	326	190	8	1	315	1	319	6.03e-60	194

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Find 93 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCCTGAGGAGCTGG+TGG	0.553359	4_3:+8799455	Msa0628190:CDS
AAAGTGGAACCATAGGATAT+TGG	0.429700	4_3:-8798367	None:intergenic
AAATCAAGTGGAGGGTTTAG+AGG	0.368484	4_3:+8799011	Msa0628190:CDS
AACCTCAACTTGGAAGCCAA+AGG	0.627785	4_3:+8798152	Msa0628190:CDS
AAGAGTTGGATCAAATTATT+AGG	0.266817	4_3:+8798824	Msa0628190:CDS
AAGCAAATATGGCTTTGCGA+AGG	0.626163	4_3:-8798265	None:intergenic
AAGCCTTATCATGGTTATGT+TGG	0.495147	4_3:+8798344	Msa0628190:CDS
AAGTATTATTACACTGAAAA+AGG	0.296469	4_3:+8799528	Msa0628190:CDS
AAGTCAATTATTGGAAGCTT+TGG	0.372595	4_3:-8798125	None:intergenic
AATACTTGAGAAATTCAACA+TGG	0.726391	4_3:-8799512	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCATTACCCTTAATCAAATT+AGG	+	chr4_3:8798067-8798086	Msa0628190:five_prime_UTR	30.0%
TCCTTCCCTAATTTGATTAA+GGG	-	chr4_3:8798076-8798095	None:intergenic	30.0%
TTCCTTCCCTAATTTGATTA+AGG	-	chr4_3:8798077-8798096	None:intergenic	30.0%
GGGAAGGAAAATTGAAAATA+TGG	+	chr4_3:8798088-8798107	Msa0628190:exon	30.0%
AAGTCAATTATTGGAAGCTT+TGG	-	chr4_3:8798128-8798147	None:intergenic	30.0%
CTCTTCTATTGAAGCAAATA+TGG	-	chr4_3:8798279-8798298	None:intergenic	30.0%
ATTGCTTAGTTAACACTTCT+GGG	+	chr4_3:8798505-8798524	Msa0628190:intron	30.0%
AGAAATATAAGTCCTCCAAA+TGG	-	chr4_3:8798735-8798754	None:intergenic	30.0%
CATATTGTACCAAAATCAAG+TGG	+	chr4_3:8798999-8799018	Msa0628190:CDS	30.0%
TTATGACCAAAGATGGAAAA+TGG	+	chr4_3:8799034-8799053	Msa0628190:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	8797937	8799745	8797937	ID=Msa0628190;Name=Msa0628190
chr4_3	mRNA	8797937	8799745	8797937	ID=Msa0628190-mRNA-1;Parent=Msa0628190;Name=Msa0628190-mRNA-1;_AED=0.36;_eAED=0.36;_QI=170\|1\|0.66\|1\|1\|1\|3\|152\|315
chr4_3	exon	8797937	8798480	8797937	ID=Msa0628190-mRNA-1:exon:2581;Parent=Msa0628190-mRNA-1
chr4_3	exon	8798792	8799116	8798792	ID=Msa0628190-mRNA-1:exon:2582;Parent=Msa0628190-mRNA-1
chr4_3	exon	8799345	8799745	8799345	ID=Msa0628190-mRNA-1:exon:2583;Parent=Msa0628190-mRNA-1
chr4_3	five_prime_UTR	8797937	8798106	8797937	ID=Msa0628190-mRNA-1:five_prime_utr;Parent=Msa0628190-mRNA-1
chr4_3	CDS	8798107	8798480	8798107	ID=Msa0628190-mRNA-1:cds;Parent=Msa0628190-mRNA-1
chr4_3	CDS	8798792	8799116	8798792	ID=Msa0628190-mRNA-1:cds;Parent=Msa0628190-mRNA-1
chr4_3	CDS	8799345	8799593	8799345	ID=Msa0628190-mRNA-1:cds;Parent=Msa0628190-mRNA-1
chr4_3	three_prime_UTR	8799594	8799745	8799594	ID=Msa0628190-mRNA-1:three_prime_utr;Parent=Msa0628190-mRNA-1

Gene Sequence

>Msa0628190

ATGGGCACAGAAGCCACTCCAAAGCTTCCAATAATTGACTTCAATAACCTCAACTTGGAAGCCAAAGGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTACAAGGCACTAGTAGAGTATGGTTGCTTTGAAGCAGTTTTTGACAAAGTTCCTTTAGACCTTCGCAAAGCCATATTTGCTTCAATAGAAGAGCTCTTTGATCTCCCTTTACAAACCAAGCTACTCAATGTGTCTAAGAAGCCTTATCATGGTTATGTTGGCCAATATCCTATGGTTCCACTTTTTGAGAGCATGGGCATTGATGATGCAAATATCTTAGAGAAAGTGAACAGTATGACCAACAACTTGTGGCCAGATGGAAACCAAAATTTTAGCAAAACTATACATTCCTTCTCTGATGAGCTAAAAGAGTTGGATCAAATTATTAGGAAGATGATTTTGGAGAGTTTAGGTGTTGAAAAGTACTTGGAGGAACACATGAATTCAACCAATTATCTTCTCCGAGTTATGAAATACAAAGGCCCTCAAACAAGTGGCACAAAATTAGGCCTCAGCACACATAGTGACAAGAATGTTGTGACCATATTGTACCAAAATCAAGTGGAGGGTTTAGAGGTTATGACCAAAGATGGAAAATGGATAAGCTACAAGCCTTCTTCTTTAGGCAGTTTTGTAGCAATGATTGGTGACTCTATTCATGCATGGTCAAACGGAAGGCTGCATTCGCCGTTTCATCGGGTGATGATGAGTGGAAATGAGGCAAGATATTCAACAGGGTTGTTCTCTATCCCCAAAGAAGGGTACATTATAAAAGCTCCTGAGGAGCTGGTGGATGAGGAACACCCTTTGCTCTTTAGGCCTTATGACCATGTTGAATTTCTCAAGTATTATTACACTGAAAAAGGCCAAAGGGATCAATTTGCTATGCACACTTATTGTGGCATTTGA

Protein sequence

>Msa0628190

MGTEATPKLPIIDFNNLNLEAKGPNWELVKSQVYKALVEYGCFEAVFDKVPLDLRKAIFASIEELFDLPLQTKLLNVSKKPYHGYVGQYPMVPLFESMGIDDANILEKVNSMTNNLWPDGNQNFSKTIHSFSDELKELDQIIRKMILESLGVEKYLEEHMNSTNYLLRVMKYKGPQTSGTKLGLSTHSDKNVVTILYQNQVEGLEVMTKDGKWISYKPSSLGSFVAMIGDSIHAWSNGRLHSPFHRVMMSGNEARYSTGLFSIPKEGYIIKAPEELVDEEHPLLFRPYDHVEFLKYYYTEKGQRDQFAMHTYCGI*