AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0335340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335340 MtrunA17_Chr2g0320031 93.730 319 20 0 1 319 1 319 0.0 617
Msa0335340 MtrunA17_Chr2g0320061 83.699 319 51 1 1 319 1 318 0.0 548
Msa0335340 MtrunA17_Chr2g0320051 82.445 319 55 1 1 319 1 318 0.0 538
Msa0335340 MtrunA17_Chr2g0320101 79.310 319 64 2 1 319 1 317 0.0 515
Msa0335340 MtrunA17_Chr2g0320071 78.683 319 66 2 1 319 1 317 0.0 513
Msa0335340 MtrunA17_Chr2g0320091 74.375 320 79 3 1 319 1 318 1.72e-169 473
Msa0335340 MtrunA17_Chr3g0129051 62.092 306 113 3 16 319 18 322 2.99e-133 381
Msa0335340 MtrunA17_Chr3g0129061 63.399 306 109 3 16 319 18 322 8.20e-132 378
Msa0335340 MtrunA17_Chr3g0129041 62.783 309 112 2 13 319 15 322 1.93e-130 374
Msa0335340 MtrunA17_Chr7g0244461 55.063 316 138 2 4 319 1 312 2.68e-128 368
Msa0335340 MtrunA17_Chr5g0438021 57.143 315 132 3 7 319 12 325 1.03e-126 365
Msa0335340 MtrunA17_Chr7g0244451 57.525 299 126 1 21 319 19 316 1.49e-124 359
Msa0335340 MtrunA17_Chr3g0106921 54.286 315 139 4 8 319 8 320 1.35e-121 352
Msa0335340 MtrunA17_Chr3g0114451 54.232 319 145 1 1 319 1 318 6.65e-118 342
Msa0335340 MtrunA17_Chr4g0013171 55.238 315 137 4 7 319 9 321 3.74e-117 340
Msa0335340 MtrunA17_Chr4g0043391 53.145 318 145 2 6 319 7 324 9.90e-116 337
Msa0335340 MtrunA17_Chr4g0038171 54.487 312 137 3 13 319 10 321 2.36e-114 333
Msa0335340 MtrunA17_Chr1g0213061 52.681 317 147 2 5 319 6 321 3.89e-114 333
Msa0335340 MtrunA17_Chr4g0038161 53.943 317 140 4 8 319 5 320 9.32e-113 329
Msa0335340 MtrunA17_Chr5g0432441 55.667 300 128 3 24 319 28 326 9.66e-112 327
Msa0335340 MtrunA17_Chr4g0013181 55.973 293 126 3 29 319 62 353 1.63e-111 327
Msa0335340 MtrunA17_Chr3g0106901 56.229 297 129 1 23 319 28 323 2.38e-111 326
Msa0335340 MtrunA17_Chr4g0038151 52.188 320 145 4 4 319 6 321 4.34e-111 325
Msa0335340 MtrunA17_Chr5g0432351 52.532 316 145 4 8 319 7 321 2.62e-110 323
Msa0335340 MtrunA17_Chr4g0013201 52.703 296 139 1 24 319 44 338 7.60e-110 322
Msa0335340 MtrunA17_Chr5g0432341 53.165 316 143 4 8 319 7 321 8.07e-110 322
Msa0335340 MtrunA17_Chr5g0404721 51.495 301 139 1 26 319 30 330 1.04e-109 322
Msa0335340 MtrunA17_Chr5g0432331 52.997 317 142 5 7 319 39 352 2.88e-109 322
Msa0335340 MtrunA17_Chr7g0224371 49.211 317 158 3 4 319 8 322 8.45e-107 314
Msa0335340 MtrunA17_Chr8g0372601 48.852 305 149 1 22 319 26 330 1.03e-104 309
Msa0335340 MtrunA17_Chr3g0107881 49.367 316 155 4 8 319 10 324 3.24e-104 308
Msa0335340 MtrunA17_Chr5g0402581 49.533 321 143 5 7 319 17 326 7.80e-103 304
Msa0335340 MtrunA17_Chr4g0013191 51.000 300 143 3 23 319 42 340 8.97e-103 305
Msa0335340 MtrunA17_Chr1g0175561 47.771 314 155 3 15 319 13 326 8.19e-102 301
Msa0335340 MtrunA17_Chr5g0402571 48.571 315 152 4 13 319 14 326 3.32e-100 297
Msa0335340 MtrunA17_Chr7g0258811 45.820 323 166 3 6 319 49 371 3.68e-100 299
Msa0335340 MtrunA17_Chr2g0292211 47.222 324 158 3 9 319 18 341 8.31e-99 295
Msa0335340 MtrunA17_Chr4g0070951 48.882 313 140 4 21 319 23 329 9.37e-99 294
Msa0335340 MtrunA17_Chr2g0292251 49.508 305 146 2 23 319 25 329 2.51e-98 294
Msa0335340 MtrunA17_Chr2g0299691 47.273 330 153 4 5 319 35 358 2.06e-97 291
Msa0335340 MtrunA17_Chr1g0155611 50.000 302 143 2 26 319 46 347 1.64e-96 289
Msa0335340 MtrunA17_Chr2g0292151 49.673 306 144 3 23 319 26 330 5.34e-96 288
Msa0335340 MtrunA17_Chr2g0292181 48.525 305 149 2 23 319 35 339 1.12e-94 285
Msa0335340 MtrunA17_Chr2g0292241 48.197 305 150 2 23 319 26 330 6.28e-94 283
Msa0335340 MtrunA17_Chr2g0292271 46.885 305 154 2 23 319 26 330 3.82e-93 280
Msa0335340 MtrunA17_Chr4g0068621 45.151 299 159 1 26 319 38 336 9.92e-92 276
Msa0335340 MtrunA17_Chr2g0292111 47.059 306 152 3 23 319 26 330 1.08e-89 272
Msa0335340 MtrunA17_Chr2g0291751 45.794 321 159 3 7 319 17 330 2.00e-89 271
Msa0335340 MtrunA17_Chr5g0400331 45.752 306 154 2 26 319 26 331 1.31e-88 268
Msa0335340 MtrunA17_Chr2g0292261 45.902 305 157 2 23 319 26 330 3.30e-88 268
Msa0335340 MtrunA17_Chr2g0292091 44.737 304 160 2 24 319 22 325 3.81e-88 267
Msa0335340 MtrunA17_Chr2g0292291 45.752 306 157 3 23 319 27 332 1.18e-87 266
Msa0335340 MtrunA17_Chr5g0432401 45.253 316 127 7 7 318 12 285 1.55e-85 259
Msa0335340 MtrunA17_Chr4g0013721 44.737 304 157 4 23 319 97 396 5.23e-85 262
Msa0335340 MtrunA17_Chr2g0292101 44.079 304 162 2 24 319 23 326 1.10e-83 256
Msa0335340 MtrunA17_Chr3g0128061 41.639 305 169 3 23 319 23 326 9.05e-82 250
Msa0335340 MtrunA17_Chr5g0421411 45.552 281 142 5 50 319 5 285 5.19e-81 247
Msa0335340 MtrunA17_Chr4g0013821 40.864 301 167 4 26 319 28 324 3.39e-78 242
Msa0335340 MtrunA17_Chr8g0371381 42.193 301 160 6 26 319 26 319 1.99e-76 236
Msa0335340 MtrunA17_Chr6g0477071 36.533 323 193 8 1 319 28 342 4.28e-75 234
Msa0335340 MtrunA17_Chr1g0204011 38.580 324 182 6 3 319 9 322 1.32e-74 232
Msa0335340 MtrunA17_Chr5g0405991 39.264 326 178 7 1 319 4 316 1.95e-74 231
Msa0335340 MtrunA17_Chr2g0322861 40.810 321 176 8 8 319 71 386 2.17e-74 233
Msa0335340 MtrunA17_Chr2g0279041 39.210 329 183 6 2 319 3 325 2.50e-74 231
Msa0335340 MtrunA17_Chr4g0024121 38.438 320 187 4 8 319 9 326 2.34e-73 229
Msa0335340 MtrunA17_Chr1g0157051 39.264 326 181 8 1 318 1 317 6.26e-73 228
Msa0335340 MtrunA17_Chr6g0467161 43.289 298 159 7 26 319 45 336 8.45e-73 228
Msa0335340 MtrunA17_Chr1g0148021 40.461 304 171 3 25 319 26 328 4.80e-72 226
Msa0335340 MtrunA17_Chr4g0063671 39.264 326 179 7 7 319 1 320 5.71e-72 225
Msa0335340 MtrunA17_Chr7g0268501 41.528 301 164 5 26 319 25 320 6.02e-71 223
Msa0335340 MtrunA17_Chr7g0268521 41.528 301 164 5 26 319 25 320 6.02e-71 223
Msa0335340 MtrunA17_Chr7g0254201 38.689 305 168 5 24 319 18 312 1.37e-70 221
Msa0335340 MtrunA17_Chr4g0053871 40.439 319 184 4 5 318 6 323 4.22e-70 221
Msa0335340 MtrunA17_Chr1g0194151 39.275 331 182 7 1 319 10 333 4.75e-70 221
Msa0335340 MtrunA17_Chr4g0046131 40.625 320 175 7 10 315 24 342 1.05e-69 220
Msa0335340 MtrunA17_Chr6g0460711 38.438 320 186 6 5 319 1 314 1.43e-69 219
Msa0335340 MtrunA17_Chr7g0225221 36.474 329 183 4 5 319 4 320 7.20e-69 217
Msa0335340 MtrunA17_Chr7g0254231 39.731 297 173 5 24 319 20 311 1.28e-68 216
Msa0335340 MtrunA17_Chr1g0194271 38.757 338 181 7 1 319 10 340 1.60e-68 217
Msa0335340 MtrunA17_Chr1g0164891 39.867 301 169 5 30 319 93 392 4.74e-68 217
Msa0335340 MtrunA17_Chr2g0296621 39.073 302 166 7 26 319 50 341 9.85e-68 215
Msa0335340 MtrunA17_Chr1g0188431 35.625 320 199 6 1 319 14 327 1.03e-67 214
Msa0335340 MtrunA17_Chr4g0075241 36.570 309 173 5 25 319 28 327 3.45e-65 208
Msa0335340 MtrunA17_Chr6g0467121 37.651 332 187 7 2 319 38 363 3.18e-64 207
Msa0335340 MtrunA17_Chr5g0401431 37.690 329 193 5 1 318 1 328 1.05e-63 204
Msa0335340 MtrunA17_Chr4g0076211 38.206 301 169 7 27 319 42 333 1.38e-63 204
Msa0335340 MtrunA17_Chr1g0181511 35.548 301 187 4 24 319 25 323 1.77e-63 204
Msa0335340 MtrunA17_Chr1g0197411 36.102 313 189 5 17 319 19 330 2.16e-63 204
Msa0335340 MtrunA17_Chr4g0072091 39.404 302 167 6 25 315 23 319 1.03e-62 201
Msa0335340 MtrunA17_Chr3g0136751 36.280 328 194 4 1 319 1 322 1.53e-61 198
Msa0335340 MtrunA17_Chr3g0114461 53.804 184 85 0 136 319 9 192 5.03e-61 193
Msa0335340 MtrunA17_Chr2g0316481 35.045 331 174 7 24 315 74 402 5.92e-60 197
Msa0335340 MtrunA17_Chr1g0181481 35.216 301 188 4 24 319 25 323 8.36e-60 194
Msa0335340 MtrunA17_Chr6g0451571 36.184 304 185 5 24 319 32 334 1.09e-59 194
Msa0335340 MtrunA17_Chr1g0181431 34.551 301 190 4 24 319 25 323 2.50e-59 193
Msa0335340 MtrunA17_Chr2g0316831 33.939 330 179 5 24 315 110 438 3.14e-59 196
Msa0335340 MtrunA17_Chr2g0279061 42.912 261 132 6 70 319 12 266 5.62e-59 190
Msa0335340 MtrunA17_Chr2g0316791 34.835 333 172 9 24 315 74 402 1.91e-58 193
Msa0335340 MtrunA17_Chr2g0278671 38.312 308 172 8 24 319 22 323 2.56e-58 190
Msa0335340 MtrunA17_Chr2g0316191 33.735 332 178 7 24 315 74 403 2.00e-57 190
Msa0335340 MtrunA17_Chr8g0364291 34.277 318 199 4 11 319 8 324 3.48e-57 187
Msa0335340 MtrunA17_Chr2g0329641 34.139 331 197 7 4 319 11 335 3.50e-56 185
Msa0335340 MtrunA17_Chr6g0467251 35.093 322 197 6 7 319 10 328 8.10e-56 184
Msa0335340 MtrunA17_Chr4g0074851 34.448 299 189 4 26 319 32 328 4.87e-54 179
Msa0335340 MtrunA17_Chr5g0413051 35.484 310 183 9 24 319 71 377 7.25e-54 180
Msa0335340 MtrunA17_Chr2g0311251 33.731 335 179 9 24 318 9 340 3.86e-53 177
Msa0335340 MtrunA17_Chr2g0311241 31.034 377 176 9 24 319 58 431 2.88e-52 177
Msa0335340 MtrunA17_Chr3g0114491 59.633 109 44 0 25 133 17 125 2.54e-42 143
Msa0335340 MtrunA17_Chr2g0292281 40.952 210 104 5 119 319 18 216 1.11e-40 142
Msa0335340 MtrunA17_Chr2g0316811 41.765 170 96 2 24 191 48 216 4.09e-39 140
Msa0335340 MtrunA17_Chr2g0316141 35.424 271 150 10 72 319 11 279 1.87e-38 137
Msa0335340 MtrunA17_Chr2g0316181 35.424 271 150 10 72 319 11 279 1.87e-38 137
Msa0335340 MtrunA17_Chr4g0004591 26.006 323 171 4 23 318 74 355 3.54e-36 133
Msa0335340 MtrunA17_Chr5g0432321 52.991 117 54 1 147 263 17 132 3.59e-35 124
Msa0335340 MtrunA17_Chr3g0104101 40.690 145 75 5 186 319 5 149 2.01e-24 96.7
Msa0335340 MtrunA17_Chr5g0432361 50.000 90 43 2 230 318 20 108 1.50e-23 93.2
Msa0335340 MtrunA17_Chr1g0181491 41.593 113 64 2 24 136 10 120 1.70e-23 94.4
Msa0335340 MtrunA17_Chr1g0181501 30.159 189 125 4 136 319 3 189 1.57e-21 90.1
Msa0335340 MtrunA17_Chr7g0254181 40.000 105 59 2 88 192 22 122 1.28e-19 84.0
Msa0335340 MtrunA17_Chr6g0468731 54.167 72 29 2 65 136 22 89 5.16e-18 77.8
Msa0335340 MtrunA17_Chr3g0137751 27.473 273 130 10 41 298 91 310 4.69e-16 77.4
Msa0335340 MtrunA17_Chr4g0013811 43.243 74 42 0 137 210 6 79 7.17e-16 71.6
Msa0335340 MtrunA17_Chr7g0254171 31.061 132 90 1 72 203 4 134 6.17e-14 68.2
Msa0335340 MtrunA17_Chr3g0124821 27.778 198 119 6 119 306 180 363 6.78e-14 71.6
Msa0335340 MtrunA17_Chr1g0196191 50.746 67 32 1 68 134 27 92 2.29e-12 63.9
Msa0335340 MtrunA17_Chr2g0316771 25.140 179 96 4 174 315 5 182 6.88e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335340 AT5G05340.1 59.667 300 118 2 22 319 26 324 4.05e-130 374
Msa0335340 AT5G58400.1 53.968 315 140 4 8 319 13 325 6.57e-113 330
Msa0335340 AT3G50990.1 51.077 325 150 3 3 319 18 341 3.42e-110 324
Msa0335340 AT5G58390.1 53.797 316 142 4 7 319 2 316 1.44e-109 321
Msa0335340 AT4G36430.1 49.375 320 149 4 8 319 16 330 7.95e-109 320
Msa0335340 AT1G14550.1 50.000 314 155 2 8 319 8 321 1.62e-107 316
Msa0335340 AT5G66390.1 51.163 301 140 1 26 319 33 333 9.94e-107 315
Msa0335340 AT2G18150.1 51.678 298 135 3 30 319 40 336 2.46e-106 314
Msa0335340 AT2G18140.1 47.853 326 160 2 4 319 10 335 4.10e-106 313
Msa0335340 AT5G06720.1 48.148 324 156 4 4 319 14 333 9.34e-103 305
Msa0335340 AT1G14540.1 47.188 320 163 2 1 319 1 315 8.06e-102 301
Msa0335340 AT1G44970.1 51.645 304 139 2 24 319 43 346 7.73e-101 300
Msa0335340 AT2G38390.1 48.254 315 154 3 14 319 19 333 3.08e-99 296
Msa0335340 AT3G32980.1 48.418 316 153 3 14 319 19 334 3.08e-98 294
Msa0335340 AT5G06730.1 46.296 324 162 4 4 319 15 334 7.32e-98 293
Msa0335340 AT4G08780.1 49.026 308 145 5 23 319 21 327 1.60e-97 292
Msa0335340 AT5G19890.1 47.678 323 151 6 7 319 13 327 1.54e-96 288
Msa0335340 AT1G49570.1 48.355 304 146 3 22 315 44 346 1.37e-95 287
Msa0335340 AT4G08770.1 46.326 313 158 3 17 319 15 327 7.20e-95 285
Msa0335340 AT2G38380.1 46.984 315 158 3 14 319 19 333 4.08e-94 283
Msa0335340 AT3G49120.1 46.440 323 162 4 7 319 14 335 9.28e-93 280
Msa0335340 AT4G16270.1 46.512 301 152 3 26 319 50 348 2.25e-90 273
Msa0335340 AT3G49110.1 45.570 316 162 3 14 319 21 336 2.89e-90 273
Msa0335340 AT2G22420.1 43.558 326 170 6 1 319 1 319 7.84e-87 264
Msa0335340 AT2G35380.1 44.377 329 164 5 9 319 8 335 5.24e-86 262
Msa0335340 AT5G19880.1 44.984 309 157 5 23 319 22 329 3.21e-85 259
Msa0335340 AT1G68850.1 41.368 307 166 6 26 319 30 335 3.52e-84 257
Msa0335340 AT3G03670.1 41.584 303 168 3 24 319 21 321 6.48e-77 238
Msa0335340 AT1G05260.1 37.920 327 193 3 1 319 1 325 5.47e-76 236
Msa0335340 AT1G71695.1 41.176 323 184 5 1 319 19 339 1.14e-75 236
Msa0335340 AT5G15180.1 39.319 323 181 7 7 319 12 329 2.94e-74 232
Msa0335340 AT5G17820.1 40.924 303 161 6 24 319 22 313 7.83e-74 230
Msa0335340 AT5G14130.1 38.580 324 186 6 4 319 12 330 9.22e-74 230
Msa0335340 AT5G42180.1 42.333 300 160 5 26 318 23 316 1.80e-73 229
Msa0335340 AT5G14130.2 38.390 323 188 6 4 319 53 371 2.67e-73 231
Msa0335340 AT5G17820.2 40.924 303 161 6 24 319 75 366 7.66e-73 229
Msa0335340 AT5G64120.1 41.216 296 162 5 30 319 39 328 7.61e-71 223
Msa0335340 AT4G37530.1 40.196 306 172 4 24 319 25 329 4.05e-70 221
Msa0335340 AT2G41480.1 38.154 325 182 7 8 319 10 328 1.23e-69 220
Msa0335340 AT5G40150.1 38.667 300 179 4 24 319 30 328 1.23e-69 220
Msa0335340 AT4G11290.1 36.842 323 194 3 5 319 6 326 1.85e-69 219
Msa0335340 AT4G30170.1 40.453 309 167 7 22 319 23 325 2.83e-69 219
Msa0335340 AT3G01190.1 39.024 328 184 7 1 319 1 321 5.90e-69 218
Msa0335340 AT4G26010.1 39.597 298 170 7 24 319 20 309 9.49e-69 217
Msa0335340 AT3G28200.1 38.411 302 182 4 21 319 16 316 1.12e-68 217
Msa0335340 AT5G67400.1 38.700 323 187 4 7 319 8 329 2.12e-68 217
Msa0335340 AT4G26010.2 38.629 321 183 9 1 319 29 337 2.22e-68 217
Msa0335340 AT1G05240.1 38.585 311 171 6 22 319 22 325 2.91e-68 216
Msa0335340 AT1G05250.1 38.585 311 171 6 22 319 22 325 2.91e-68 216
Msa0335340 AT3G21770.1 36.755 302 181 3 24 317 27 326 6.95e-68 215
Msa0335340 AT2G18980.1 38.820 322 182 5 8 319 7 323 8.71e-68 215
Msa0335340 AT3G49960.1 38.462 325 189 4 5 319 6 329 1.78e-67 214
Msa0335340 AT4G37520.1 38.235 306 178 4 24 319 25 329 4.03e-67 213
Msa0335340 AT5G39580.1 40.067 297 165 6 30 319 29 319 2.15e-66 211
Msa0335340 AT4G33420.1 38.644 295 174 6 26 319 37 325 5.93e-66 210
Msa0335340 AT4G33420.2 38.644 295 174 6 26 319 84 372 2.64e-65 210
Msa0335340 AT5G51890.1 37.705 305 177 6 23 319 23 322 6.41e-65 207
Msa0335340 AT4G37520.2 37.908 306 176 5 24 319 25 326 6.46e-65 207
Msa0335340 AT2G34060.1 39.088 307 174 6 23 317 39 344 3.05e-64 206
Msa0335340 AT1G30870.1 38.667 300 165 7 26 315 51 341 3.97e-63 204
Msa0335340 AT2G35380.2 44.939 247 122 4 86 319 2 247 1.26e-62 199
Msa0335340 AT4G37530.2 42.913 254 135 3 24 267 25 278 2.18e-61 197
Msa0335340 AT5G64110.1 39.799 299 165 5 30 319 38 330 2.26e-61 199
Msa0335340 AT4G17690.1 36.577 298 184 4 26 319 26 322 2.43e-61 198
Msa0335340 AT4G31760.1 36.391 327 189 5 2 319 10 326 7.42e-61 197
Msa0335340 AT2G39040.1 39.423 312 170 8 23 319 43 350 8.74e-61 197
Msa0335340 AT2G24800.1 36.601 306 179 4 24 319 29 329 1.67e-60 196
Msa0335340 AT1G77100.1 39.077 325 186 10 1 319 1 319 2.34e-60 196
Msa0335340 AT4G25980.1 35.583 326 192 7 6 319 7 326 2.61e-60 196
Msa0335340 AT4G33870.1 32.440 336 179 7 24 315 66 397 2.08e-59 196
Msa0335340 AT5G64100.1 37.667 300 170 6 29 319 40 331 4.63e-59 192
Msa0335340 AT5G47000.1 36.137 321 193 7 8 319 13 330 1.96e-58 191
Msa0335340 AT1G34510.1 37.667 300 179 6 21 319 17 309 3.88e-58 189
Msa0335340 AT1G24110.1 37.461 323 184 8 7 319 8 322 2.51e-57 188
Msa0335340 AT5G24070.1 34.731 334 189 9 8 319 9 335 3.02e-57 188
Msa0335340 AT4G21960.1 34.853 307 193 4 18 319 23 327 8.99e-57 187
Msa0335340 AT2G43480.1 36.013 311 174 10 25 319 34 335 4.75e-56 185
Msa0335340 AT5G22410.1 35.410 305 177 8 24 316 26 322 3.92e-55 182
Msa0335340 AT2G37130.1 34.426 305 188 6 23 319 27 327 1.06e-53 179
Msa0335340 AT3G17070.1 34.921 315 181 8 21 319 33 339 1.61e-53 179
Msa0335340 AT2G37130.2 34.448 299 184 6 29 319 2 296 2.24e-52 174
Msa0335340 AT5G39580.2 40.102 197 109 4 30 226 29 216 3.57e-41 143
Msa0335340 AT2G24800.2 37.915 211 122 3 24 229 29 235 3.65e-40 141
Msa0335340 AT4G25980.2 41.765 170 95 3 24 193 69 234 4.76e-40 142
Msa0335340 AT3G17070.2 34.328 268 151 9 68 319 18 276 6.53e-39 139
Msa0335340 AT3G42570.1 35.484 93 59 1 102 193 57 149 1.64e-13 67.4
Msa0335340 AT4G08390.2 27.749 191 114 6 119 301 186 360 1.93e-13 70.9
Msa0335340 AT4G08390.5 27.749 191 114 6 119 301 186 360 1.93e-13 70.9
Msa0335340 AT4G08390.1 27.749 191 114 6 119 301 186 360 1.93e-13 70.9
Msa0335340 AT4G08390.3 27.749 191 114 6 119 301 185 359 2.13e-13 70.5
Msa0335340 AT1G77490.2 25.357 280 167 8 39 301 85 339 2.53e-13 70.5
Msa0335340 AT1G77490.1 25.357 280 167 8 39 301 85 339 3.05e-13 70.5

Find 72 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACCTTACAGTCCTTTC+TGG 0.193319 2_4:-54444157 Msa0335340:CDS
CGCAGAAAGTTGTGCATTAA+TGG 0.195469 2_4:+54446191 None:intergenic
GCAGGGTTGTGAATTGATTT+TGG 0.222497 2_4:-54443763 Msa0335340:exon
ATTTGACAACAATTATTATA+AGG 0.243384 2_4:-54443975 Msa0335340:CDS
CAGAAGATGGTCCAGGAATT+TGG 0.260659 2_4:+54444227 None:intergenic
TTGAGAGATTGTTTAATTAC+AGG 0.275887 2_4:-54443644 Msa0335340:three_prime_UTR
AGAATCAAAGGGTGCTAAAT+TGG 0.309264 2_4:+54444012 None:intergenic
AAAGACCTTTATTAGCAATA+AGG 0.316103 2_4:+54443951 None:intergenic
TATTTATAGATTTAACTATA+TGG 0.322853 2_4:-54446271 Msa0335340:exon
TGTTGGTTCTCAAATTTCTT+TGG 0.324712 2_4:-54443900 Msa0335340:CDS
TTTCATTGCGCACAATAGTT+TGG 0.326396 2_4:+54446139 None:intergenic
CGCACAATAGTTTGGAGATT+AGG 0.343295 2_4:+54446147 None:intergenic
ATCAATCTTATTGGATGATA+AGG 0.345152 2_4:-54444696 Msa0335340:CDS
ATGTGATGCATCAATCTTAT+TGG 0.358275 2_4:-54444705 Msa0335340:CDS
AGTAAAATTAGTCCTCTTAC+TGG 0.361292 2_4:-54443812 Msa0335340:CDS
TTGATAATTTGTAGTATTGT+TGG 0.376154 2_4:-54443585 Msa0335340:three_prime_UTR
AAGGACCTTATTGCTAATAA+AGG 0.382204 2_4:-54443956 Msa0335340:CDS
TAGTCCTCTTACTGGGACTA+AGG 0.384532 2_4:-54443804 Msa0335340:CDS
GCAGCAAACAGCCAAATTCC+TGG 0.386973 2_4:-54444238 Msa0335340:CDS
GTGAGATCAGAAAGAATTGC+AGG 0.399204 2_4:-54443781 Msa0335340:CDS
CCCCTAGCTGAATCTTTGTT+AGG 0.406359 2_4:+54444644 None:intergenic
TAATTGTTGTCAAATTTAGT+TGG 0.427829 2_4:+54443983 None:intergenic
CATAAAGGTTGACTAGATCT+TGG 0.429036 2_4:-54443613 Msa0335340:three_prime_UTR
GATGATAAGGGAACATTTGT+CGG 0.429735 2_4:-54444683 Msa0335340:CDS
GTTCTCAAATTTCTTTGGTT+AGG 0.431163 2_4:-54443895 Msa0335340:CDS
TCAATCTTATTGGATGATAA+GGG 0.439805 2_4:-54444695 Msa0335340:CDS
TTACATTTACAAAGCAATCA+TGG 0.442899 2_4:+54446058 None:intergenic
TAGAGACTTTGCTGCTGCTA+TGG 0.447233 2_4:-54443843 Msa0335340:CDS
TTACAGGGTCTAGGTCATAA+AGG 0.449606 2_4:-54443628 Msa0335340:three_prime_UTR
CTTCATTTGCTTCCCTCCAT+TGG 0.453290 2_4:-54446309 Msa0335340:five_prime_UTR
ATTGTTTAATTACAGGGTCT+AGG 0.465800 2_4:-54443637 Msa0335340:three_prime_UTR
TCACCCTTAGTCCCAGTAAG+AGG 0.474368 2_4:+54443800 None:intergenic
TTGTGAGACTAATAATTTGA+GGG 0.486054 2_4:-54443703 Msa0335340:three_prime_UTR
AGCAAGGTTTCTGTTAATGT+TGG 0.494360 2_4:+54444075 None:intergenic
GTTAGGAAGTATAGTAGAGA+TGG 0.495131 2_4:-54443878 Msa0335340:CDS
TTGACACTCAGTTTGCCCTA+TGG 0.499810 2_4:+54444126 None:intergenic
AAAAGAAATTGTCCTACCTC+TGG 0.501405 2_4:-54444043 Msa0335340:CDS
CTTGCATCTCTTCTTCCTAG+TGG 0.506526 2_4:+54444277 None:intergenic
CTTTCTGGTGCACACACCAT+AGG 0.506834 2_4:-54444142 Msa0335340:CDS
AGTTGGAGTGACAGAATCAA+AGG 0.515916 2_4:+54444000 None:intergenic
CTAGCACTTGCAACTAGAGA+TGG 0.521717 2_4:-54444548 Msa0335340:CDS
AATTAATTTATATAGCTTGG+AGG 0.537880 2_4:-54444316 Msa0335340:intron
GATAGGTCAGAAGATGGTCC+AGG 0.542401 2_4:+54444220 None:intergenic
TGTAACAAAGAGTTTAATCA+AGG 0.543770 2_4:+54446245 None:intergenic
TTTGTGAGACTAATAATTTG+AGG 0.546498 2_4:-54443704 Msa0335340:three_prime_UTR
TGAGAGATTGTTTAATTACA+GGG 0.549156 2_4:-54443643 Msa0335340:three_prime_UTR
AACTAGAGATGGAATAGCAC+TGG 0.557344 2_4:-54444537 Msa0335340:intron
GACCTAACAAAGATTCAGCT+AGG 0.557775 2_4:-54444646 Msa0335340:CDS
AGAAATTGTCCTACCTCTGG+TGG 0.560005 2_4:-54444040 Msa0335340:CDS
TATAGCTTGGAGGACCCTCA+TGG 0.560384 2_4:-54444306 Msa0335340:intron
ACCTAACAAAGATTCAGCTA+GGG 0.564107 2_4:-54444645 Msa0335340:CDS
ATCTAGCTTGAAGCTACCAA+TGG 0.565347 2_4:+54446293 None:intergenic
AGTCCTCTTACTGGGACTAA+GGG 0.567071 2_4:-54443803 Msa0335340:CDS
TAGCTTGAAGCTACCAATGG+AGG 0.570010 2_4:+54446296 None:intergenic
GTGCACCAGAAAGGACTGTA+AGG 0.571331 2_4:+54444152 None:intergenic
TCCTAGTGGTACTGTCCATG+AGG 0.574303 2_4:+54444291 None:intergenic
TTTGCAAGAAGCTTCAACGT+TGG 0.574605 2_4:+54444595 None:intergenic
TCAATTTAATAAATATTGTG+TGG 0.574856 2_4:-54443673 Msa0335340:three_prime_UTR
GTTGGAGTGACAGAATCAAA+GGG 0.583532 2_4:+54444001 None:intergenic
TTTCTGGTGCACACACCATA+GGG 0.590778 2_4:-54444141 Msa0335340:CDS
GTAAAATTAGTCCTCTTACT+GGG 0.603083 2_4:-54443811 Msa0335340:CDS
CCTAGTGGTACTGTCCATGA+GGG 0.605688 2_4:+54444292 None:intergenic
TAAATTGGTGTCACCACCAG+AGG 0.617325 2_4:+54444027 None:intergenic
AGCTTGAAGCTACCAATGGA+GGG 0.617960 2_4:+54446297 None:intergenic
AGTGTGGATAGGTCAGAAGA+TGG 0.621043 2_4:+54444214 None:intergenic
AACAAAGAGTTTAATCAAGG+TGG 0.628414 2_4:+54446248 None:intergenic
CCTAACAAAGATTCAGCTAG+GGG 0.634590 2_4:-54444644 Msa0335340:CDS
CTATGGTGTGTGCACCAGAA+AGG 0.646942 2_4:+54444143 None:intergenic
CCCTCATGGACAGTACCACT+AGG 0.647878 2_4:-54444292 Msa0335340:CDS
AATATCTGCACAAGAGACAG+TGG 0.650907 2_4:+54444571 None:intergenic
TGAGATCAGAAAGAATTGCA+GGG 0.655189 2_4:-54443780 Msa0335340:CDS
TTGGTGTCACCACCAGAGGT+AGG 0.659540 2_4:+54444031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATAGATTTAACTATA+TGG - chr2_4:54443606-54443625 Msa0335340:three_prime_UTR 10.0%
!! TATTGAAAAATTAAAATGAT+CGG + chr2_4:54444869-54444888 None:intergenic 10.0%
!! CATATATAAATATATAAACT+AGG - chr2_4:54445403-54445422 Msa0335340:intron 10.0%
!! TATATAAATTAATTGAAACA+TGG + chr2_4:54445555-54445574 None:intergenic 10.0%
!! CTCATTAATTTATATAACTT+AGG - chr2_4:54443923-54443942 Msa0335340:CDS 15.0%
!!! CTTAATTAAGCTTTTTTTAT+AGG + chr2_4:54444250-54444269 None:intergenic 15.0%
!!! AAACAACATCATTTTTTATT+GGG + chr2_4:54444513-54444532 None:intergenic 15.0%
!! ATTGAAAAATTAAAATGATC+GGG + chr2_4:54444868-54444887 None:intergenic 15.0%
!!! GTTTTATTTCTTTGTTTATT+TGG - chr2_4:54445144-54445163 Msa0335340:intron 15.0%
!! TTCAATTAATTTATATAGCT+TGG - chr2_4:54445558-54445577 Msa0335340:intron 15.0%
!! ATTTGACAACAATTATTATA+AGG - chr2_4:54445902-54445921 Msa0335340:intron 15.0%
!! TCAATTTAATAAATATTGTG+TGG - chr2_4:54446204-54446223 Msa0335340:CDS 15.0%
!! GAAGAGTTATATATGTTTAA+AGG - chr2_4:54444031-54444050 Msa0335340:CDS 20.0%
!! TAAGGATTAATTATTCAGAT+TGG - chr2_4:54444136-54444155 Msa0335340:CDS 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr2_4:54444281-54444300 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr2_4:54444282-54444301 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr2_4:54444312-54444331 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr2_4:54444313-54444332 None:intergenic 20.0%
!!! ACATTTTCCTTAAACATTTT+AGG - chr2_4:54444345-54444364 Msa0335340:intron 20.0%
!!! CATTTTCCTTAAACATTTTA+GGG - chr2_4:54444346-54444365 Msa0335340:intron 20.0%
!!! CAAACAACATCATTTTTTAT+TGG + chr2_4:54444514-54444533 None:intergenic 20.0%
!! TCAACAACAAAAAATAATCA+CGG - chr2_4:54445051-54445070 Msa0335340:intron 20.0%
!!! TATTTCTTTGTTTATTTGGT+AGG - chr2_4:54445148-54445167 Msa0335340:intron 20.0%
!!! ATTTCTTTGTTTATTTGGTA+GGG - chr2_4:54445149-54445168 Msa0335340:intron 20.0%
!! TTTAACTCGAGTAATATTAA+CGG - chr2_4:54445437-54445456 Msa0335340:intron 20.0%
!!! GTTAATATTTTTTTACAGAG+GGG + chr2_4:54445474-54445493 None:intergenic 20.0%
!!! GGTTAATATTTTTTTACAGA+GGG + chr2_4:54445475-54445494 None:intergenic 20.0%
!! TATTAACCCTAATATTACAT+TGG - chr2_4:54445487-54445506 Msa0335340:intron 20.0%
!! TGTTTACCAATGTAATATTA+GGG + chr2_4:54445496-54445515 None:intergenic 20.0%
!! ATGTTTACCAATGTAATATT+AGG + chr2_4:54445497-54445516 None:intergenic 20.0%
!! ATTAATTGAAACATGGTTAT+AGG + chr2_4:54445548-54445567 None:intergenic 20.0%
!! AATTAATTTATATAGCTTGG+AGG - chr2_4:54445561-54445580 Msa0335340:intron 20.0%
!! TAATTGTTGTCAAATTTAGT+TGG + chr2_4:54445897-54445916 None:intergenic 20.0%
!!! TTGATAATTTGTAGTATTGT+TGG - chr2_4:54446292-54446311 Msa0335340:five_prime_UTR 20.0%
! TGTAACAAAGAGTTTAATCA+AGG + chr2_4:54443635-54443654 None:intergenic 25.0%
! TTACATTTACAAAGCAATCA+TGG + chr2_4:54443822-54443841 None:intergenic 25.0%
! GTTATATATGTTTAAAGGTG+TGG - chr2_4:54444036-54444055 Msa0335340:CDS 25.0%
! ATCGTGTTAAAATATTGTCT+TGG - chr2_4:54444083-54444102 Msa0335340:CDS 25.0%
! TCGTGTTAAAATATTGTCTT+GGG - chr2_4:54444084-54444103 Msa0335340:CDS 25.0%
! AAAATTTCCATCAACATTCT+TGG + chr2_4:54444373-54444392 None:intergenic 25.0%
!! GCTGATGGAAAAATTTTATA+AGG - chr2_4:54444410-54444429 Msa0335340:intron 25.0%
!!! AAAGTGTGACTTTATTTTGT+AGG - chr2_4:54444438-54444457 Msa0335340:intron 25.0%
!!! AAGTGTGACTTTATTTTGTA+GGG - chr2_4:54444439-54444458 Msa0335340:intron 25.0%
! ATCACAAAAAAAAATGCACA+GGG + chr2_4:54444668-54444687 None:intergenic 25.0%
! AATCACAAAAAAAAATGCAC+AGG + chr2_4:54444669-54444688 None:intergenic 25.0%
!!! TGTTGTTTTATATGTTGTCT+TGG - chr2_4:54444705-54444724 Msa0335340:CDS 25.0%
! ATTTATTACTGTACTCACTA+TGG + chr2_4:54445017-54445036 None:intergenic 25.0%
! CAACAACAAAAAATAATCAC+GGG - chr2_4:54445052-54445071 Msa0335340:intron 25.0%
!!! TTCAGTTACTATTTTAGTCA+CGG - chr2_4:54445081-54445100 Msa0335340:intron 25.0%
! ATCAATCTTATTGGATGATA+AGG - chr2_4:54445181-54445200 Msa0335340:intron 25.0%
! TCAATCTTATTGGATGATAA+GGG - chr2_4:54445182-54445201 Msa0335340:intron 25.0%
!!! GGGTTAATATTTTTTTACAG+AGG + chr2_4:54445476-54445495 None:intergenic 25.0%
!! TTCTTTTTCTTAAGTTAGCA+AGG + chr2_4:54445821-54445840 None:intergenic 25.0%
! AAAGACCTTTATTAGCAATA+AGG + chr2_4:54445929-54445948 None:intergenic 25.0%
! TTTGTGAGACTAATAATTTG+AGG - chr2_4:54446173-54446192 Msa0335340:CDS 25.0%
! TTGTGAGACTAATAATTTGA+GGG - chr2_4:54446174-54446193 Msa0335340:CDS 25.0%
! TTGAGAGATTGTTTAATTAC+AGG - chr2_4:54446233-54446252 Msa0335340:CDS 25.0%
! TGAGAGATTGTTTAATTACA+GGG - chr2_4:54446234-54446253 Msa0335340:CDS 25.0%
AACAAAGAGTTTAATCAAGG+TGG + chr2_4:54443632-54443651 None:intergenic 30.0%
AAGTTATCAAAAATGAAGCC+CGG - chr2_4:54443767-54443786 Msa0335340:exon 30.0%
! ATATATGTTTAAAGGTGTGG+TGG - chr2_4:54444039-54444058 Msa0335340:CDS 30.0%
CGTGTTAAAATATTGTCTTG+GGG - chr2_4:54444085-54444104 Msa0335340:CDS 30.0%
! TAATTCGCTTTGTTGTATGA+TGG - chr2_4:54444186-54444205 Msa0335340:CDS 30.0%
! AATTCGCTTTGTTGTATGAT+GGG - chr2_4:54444187-54444206 Msa0335340:CDS 30.0%
TGTTTAAGGAAAATGTCACA+TGG + chr2_4:54444341-54444360 None:intergenic 30.0%
!! TGTTGATGGAAATTTTTGAC+AGG - chr2_4:54444377-54444396 Msa0335340:intron 30.0%
!! GTTGATGGAAATTTTTGACA+GGG - chr2_4:54444378-54444397 Msa0335340:intron 30.0%
TCACAAAAAAAAATGCACAG+GGG + chr2_4:54444667-54444686 None:intergenic 30.0%
TTGATTTCTCATCTTCATTG+TGG - chr2_4:54444739-54444758 Msa0335340:intron 30.0%
!!! TCAGTTACTATTTTAGTCAC+GGG - chr2_4:54445082-54445101 Msa0335340:intron 30.0%
ATGTGATGCATCAATCTTAT+TGG - chr2_4:54445172-54445191 Msa0335340:intron 30.0%
GTTCATTGTTCATGTCTTAT+AGG + chr2_4:54445384-54445403 None:intergenic 30.0%
GGATACACATATTGTTTACA+GGG + chr2_4:54445527-54445546 None:intergenic 30.0%
AGGATACACATATTGTTTAC+AGG + chr2_4:54445528-54445547 None:intergenic 30.0%
!! TTGAAACATTTTAGTGAGTG+TGG + chr2_4:54445682-54445701 None:intergenic 30.0%
AAGGACCTTATTGCTAATAA+AGG - chr2_4:54445921-54445940 Msa0335340:intron 30.0%
! TCTGATCAAGTTCTTTTCAA+TGG - chr2_4:54445954-54445973 Msa0335340:intron 30.0%
!! TGTTGGTTCTCAAATTTCTT+TGG - chr2_4:54445977-54445996 Msa0335340:intron 30.0%
GTTCTCAAATTTCTTTGGTT+AGG - chr2_4:54445982-54446001 Msa0335340:intron 30.0%
AGTAAAATTAGTCCTCTTAC+TGG - chr2_4:54446065-54446084 Msa0335340:CDS 30.0%
GTAAAATTAGTCCTCTTACT+GGG - chr2_4:54446066-54446085 Msa0335340:CDS 30.0%
!! GTTGTGAATTGATTTTGGAT+TGG - chr2_4:54446119-54446138 Msa0335340:CDS 30.0%
ATTGTTTAATTACAGGGTCT+AGG - chr2_4:54446240-54446259 Msa0335340:CDS 30.0%
TTTCATTGCGCACAATAGTT+TGG + chr2_4:54443741-54443760 None:intergenic 35.0%
!! AAAGGTGTGGTGGATAAAAT+TGG - chr2_4:54444049-54444068 Msa0335340:CDS 35.0%
GTTAAAATATTGTCTTGGGG+TGG - chr2_4:54444088-54444107 Msa0335340:CDS 35.0%
GTAGCTTAGAGAGAATTGTA+AGG - chr2_4:54444118-54444137 Msa0335340:CDS 35.0%
! TTCAGATTGGTGTTCATGTT+TGG - chr2_4:54444149-54444168 Msa0335340:CDS 35.0%
! TCAGATTGGTGTTCATGTTT+GGG - chr2_4:54444150-54444169 Msa0335340:CDS 35.0%
CTTGGTCCCTAAAATGTTTA+AGG + chr2_4:54444355-54444374 None:intergenic 35.0%
GATGATAAGGGAACATTTGT+CGG - chr2_4:54445194-54445213 Msa0335340:intron 35.0%
ACCTAACAAAGATTCAGCTA+GGG - chr2_4:54445232-54445251 Msa0335340:intron 35.0%
!!! AGCTTCAACGTTGGTTTTAA+TGG + chr2_4:54445276-54445295 None:intergenic 35.0%
!! ACATTTTAGTGAGTGTGGAT+AGG + chr2_4:54445677-54445696 None:intergenic 35.0%
AGCAAGGTTTCTGTTAATGT+TGG + chr2_4:54445805-54445824 None:intergenic 35.0%
AAAAGAAATTGTCCTACCTC+TGG - chr2_4:54445834-54445853 Msa0335340:intron 35.0%
!! AGAATCAAAGGGTGCTAAAT+TGG + chr2_4:54445868-54445887 None:intergenic 35.0%
! CAAGTTCTTTTCAATGGTGT+TGG - chr2_4:54445960-54445979 Msa0335340:intron 35.0%
! GTTAGGAAGTATAGTAGAGA+TGG - chr2_4:54445999-54446018 Msa0335340:intron 35.0%
TGAGATCAGAAAGAATTGCA+GGG - chr2_4:54446097-54446116 Msa0335340:CDS 35.0%
CATAAAGGTTGACTAGATCT+TGG - chr2_4:54446264-54446283 Msa0335340:exon 35.0%
! ATCTAGCTTGAAGCTACCAA+TGG + chr2_4:54443587-54443606 None:intergenic 40.0%
CGCAGAAAGTTGTGCATTAA+TGG + chr2_4:54443689-54443708 None:intergenic 40.0%
CGCACAATAGTTTGGAGATT+AGG + chr2_4:54443733-54443752 None:intergenic 40.0%
TATCAAAAATGAAGCCCGGA+TGG - chr2_4:54443771-54443790 Msa0335340:CDS 40.0%
ATCAAAAATGAAGCCCGGAT+GGG - chr2_4:54443772-54443791 Msa0335340:CDS 40.0%
GGTGGATAAAATTGGTGTAG+TGG - chr2_4:54444057-54444076 Msa0335340:CDS 40.0%
TTAGGGACCAAGAATGTTGA+TGG - chr2_4:54444363-54444382 Msa0335340:intron 40.0%
ACAGGGACTAAAAATGCTGA+TGG - chr2_4:54444395-54444414 Msa0335340:intron 40.0%
! TGTGATTTGTCGTCTGCTTT+CGG - chr2_4:54444682-54444701 Msa0335340:CDS 40.0%
TAGCGTCAATGTTACTGATC+AGG - chr2_4:54444830-54444849 Msa0335340:intron 40.0%
TTTGTCGGTGAGAAAAATGC+TGG - chr2_4:54445209-54445228 Msa0335340:intron 40.0%
GACCTAACAAAGATTCAGCT+AGG - chr2_4:54445231-54445250 Msa0335340:intron 40.0%
CCTAACAAAGATTCAGCTAG+GGG - chr2_4:54445233-54445252 Msa0335340:intron 40.0%
TTTGCAAGAAGCTTCAACGT+TGG + chr2_4:54445285-54445304 None:intergenic 40.0%
AATATCTGCACAAGAGACAG+TGG + chr2_4:54445309-54445328 None:intergenic 40.0%
AACTAGAGATGGAATAGCAC+TGG - chr2_4:54445340-54445359 Msa0335340:intron 40.0%
CGAGTAATATTAACGGCTTC+TGG - chr2_4:54445444-54445463 Msa0335340:intron 40.0%
AATGACCTTACAGTCCTTTC+TGG - chr2_4:54445720-54445739 Msa0335340:intron 40.0%
GTTGGAGTGACAGAATCAAA+GGG + chr2_4:54445879-54445898 None:intergenic 40.0%
AGTTGGAGTGACAGAATCAA+AGG + chr2_4:54445880-54445899 None:intergenic 40.0%
GTGAGATCAGAAAGAATTGC+AGG - chr2_4:54446096-54446115 Msa0335340:CDS 40.0%
!! GCAGGGTTGTGAATTGATTT+TGG - chr2_4:54446114-54446133 Msa0335340:CDS 40.0%
TTACAGGGTCTAGGTCATAA+AGG - chr2_4:54446249-54446268 Msa0335340:CDS 40.0%
CTTCATTTGCTTCCCTCCAT+TGG - chr2_4:54443568-54443587 Msa0335340:three_prime_UTR 45.0%
AGCTTGAAGCTACCAATGGA+GGG + chr2_4:54443583-54443602 None:intergenic 45.0%
TAGCTTGAAGCTACCAATGG+AGG + chr2_4:54443584-54443603 None:intergenic 45.0%
TCAAAAATGAAGCCCGGATG+GGG - chr2_4:54443773-54443792 Msa0335340:CDS 45.0%
CGTCAATGTTACTGATCAGG+AGG - chr2_4:54444833-54444852 Msa0335340:intron 45.0%
TACTGTACTCACTATGGAGC+AGG + chr2_4:54445011-54445030 None:intergenic 45.0%
CCCCTAGCTGAATCTTTGTT+AGG + chr2_4:54445236-54445255 None:intergenic 45.0%
CTAGCACTTGCAACTAGAGA+TGG - chr2_4:54445329-54445348 Msa0335340:intron 45.0%
CTTGCATCTCTTCTTCCTAG+TGG + chr2_4:54445603-54445622 None:intergenic 45.0%
CAGAAGATGGTCCAGGAATT+TGG + chr2_4:54445653-54445672 None:intergenic 45.0%
AGTGTGGATAGGTCAGAAGA+TGG + chr2_4:54445666-54445685 None:intergenic 45.0%
! TTTCTGGTGCACACACCATA+GGG - chr2_4:54445736-54445755 Msa0335340:intron 45.0%
TTGACACTCAGTTTGCCCTA+TGG + chr2_4:54445754-54445773 None:intergenic 45.0%
AGAAATTGTCCTACCTCTGG+TGG - chr2_4:54445837-54445856 Msa0335340:intron 45.0%
!! TAAATTGGTGTCACCACCAG+AGG + chr2_4:54445853-54445872 None:intergenic 45.0%
TAGAGACTTTGCTGCTGCTA+TGG - chr2_4:54446034-54446053 Msa0335340:intron 45.0%
TAGTCCTCTTACTGGGACTA+AGG - chr2_4:54446073-54446092 Msa0335340:CDS 45.0%
AGTCCTCTTACTGGGACTAA+GGG - chr2_4:54446074-54446093 Msa0335340:CDS 45.0%
!!! ACAAAATTTTAAATATTTAT+AGG - chr2_4:54444469-54444488 Msa0335340:intron 5.0%
!!! CAAAATTTTAAATATTTATA+GGG - chr2_4:54444470-54444489 Msa0335340:intron 5.0%
!! ATATATAAATATATAAACTA+GGG - chr2_4:54445404-54445423 Msa0335340:intron 5.0%
CAAAAATGAAGCCCGGATGG+GGG - chr2_4:54443774-54443793 Msa0335340:CDS 50.0%
AAGTATAGAAGCCCCCATCC+GGG + chr2_4:54443788-54443807 None:intergenic 50.0%
GAAGTATAGAAGCCCCCATC+CGG + chr2_4:54443789-54443808 None:intergenic 50.0%
TATAGCTTGGAGGACCCTCA+TGG - chr2_4:54445571-54445590 Msa0335340:intron 50.0%
CCTAGTGGTACTGTCCATGA+GGG + chr2_4:54445588-54445607 None:intergenic 50.0%
TCCTAGTGGTACTGTCCATG+AGG + chr2_4:54445589-54445608 None:intergenic 50.0%
GCAGCAAACAGCCAAATTCC+TGG - chr2_4:54445639-54445658 Msa0335340:intron 50.0%
GATAGGTCAGAAGATGGTCC+AGG + chr2_4:54445660-54445679 None:intergenic 50.0%
GTGCACCAGAAAGGACTGTA+AGG + chr2_4:54445728-54445747 None:intergenic 50.0%
CTATGGTGTGTGCACCAGAA+AGG + chr2_4:54445737-54445756 None:intergenic 50.0%
! CTTTCTGGTGCACACACCAT+AGG - chr2_4:54445735-54445754 Msa0335340:intron 50.0%
TCACCCTTAGTCCCAGTAAG+AGG + chr2_4:54446080-54446099 None:intergenic 50.0%
CCCTCATGGACAGTACCACT+AGG - chr2_4:54445585-54445604 Msa0335340:intron 55.0%
!! TTGGTGTCACCACCAGAGGT+AGG + chr2_4:54445849-54445868 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 54443546 54446353 54443546 ID=Msa0335340;Name=Msa0335340
chr2_4 mRNA 54443546 54446353 54443546 ID=Msa0335340-mRNA-1;Parent=Msa0335340;Name=Msa0335340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=79|1|1|1|1|1|3|223|319
chr2_4 exon 54443546 54444323 54443546 ID=Msa0335340-mRNA-1:exon:16431;Parent=Msa0335340-mRNA-1
chr2_4 exon 54444538 54444729 54444538 ID=Msa0335340-mRNA-1:exon:16430;Parent=Msa0335340-mRNA-1
chr2_4 exon 54446062 54446353 54446062 ID=Msa0335340-mRNA-1:exon:16429;Parent=Msa0335340-mRNA-1
chr2_4 five_prime_UTR 54446275 54446353 54446275 ID=Msa0335340-mRNA-1:five_prime_utr;Parent=Msa0335340-mRNA-1
chr2_4 CDS 54446062 54446274 54446062 ID=Msa0335340-mRNA-1:cds;Parent=Msa0335340-mRNA-1
chr2_4 CDS 54444538 54444729 54444538 ID=Msa0335340-mRNA-1:cds;Parent=Msa0335340-mRNA-1
chr2_4 CDS 54443769 54444323 54443769 ID=Msa0335340-mRNA-1:cds;Parent=Msa0335340-mRNA-1
chr2_4 three_prime_UTR 54443546 54443768 54443546 ID=Msa0335340-mRNA-1:three_prime_utr;Parent=Msa0335340-mRNA-1
Gene Sequence

>Msa0335340

ATGGCCACCTTGATTAAACTCTTTGTTACACTCTCTATTTGTTCTCTCTTAGCTTGTTCAACCATTAATGCACAACTTTCTGCGAACTTCTATGCAAGAACTTGTCCTAATCTCCAAACTATTGTGCGCAATGAAATGATCAAAGTTATCAAAAATGAAGCCCGGATGGGGGCTTCTATACTTCGCTTGTTCTTCCATGATTGCTTTGTAAATGGATGTGATGCATCAATCTTATTGGATGATAAGGGAACATTTGTCGGTGAGAAAAATGCTGGACCTAACAAAGATTCAGCTAGGGGTTTTGAAGTGATTGATACCATTAAAACCAACGTTGAAGCTTCTTGCAAAGCCACTGTCTCTTGTGCAGATATTCTAGCACTTGCAACTAGAGATGGAATAGCACTGCTTGGAGGACCCTCATGGACAGTACCACTAGGAAGAAGAGATGCAAGAACAGCAAGTCAAAGTGCAGCAAACAGCCAAATTCCTGGACCATCTTCTGACCTATCCACACTCACTAAAATGTTTCAAAACAAAAGTCTAACATTAAATGACCTTACAGTCCTTTCTGGTGCACACACCATAGGGCAAACTGAGTGTCAATTTTTTAGAAATCGCATACACAATGAAGCCAACATTAACAGAAACCTTGCTAACTTAAGAAAAAGAAATTGTCCTACCTCTGGTGGTGACACCAATTTAGCACCCTTTGATTCTGTCACTCCAACTAAATTTGACAACAATTATTATAAGGACCTTATTGCTAATAAAGGTCTTTTACATTCTGATCAAGTTCTTTTCAATGGTGTTGGTTCTCAAATTTCTTTGGTTAGGAAGTATAGTAGAGATGGTGCTGCTTTTTCTAGAGACTTTGCTGCTGCTATGGTGAAGATGAGTAAAATTAGTCCTCTTACTGGGACTAAGGGTGAGATCAGAAAGAATTGCAGGGTTGTGAATTGA
Protein sequence

>Msa0335340

MATLIKLFVTLSICSLLACSTINAQLSANFYARTCPNLQTIVRNEMIKVIKNEARMGASILRLFFHDCFVNGCDASILLDDKGTFVGEKNAGPNKDSARGFEVIDTIKTNVEASCKATVSCADILALATRDGIALLGGPSWTVPLGRRDARTASQSAANSQIPGPSSDLSTLTKMFQNKSLTLNDLTVLSGAHTIGQTECQFFRNRIHNEANINRNLANLRKRNCPTSGGDTNLAPFDSVTPTKFDNNYYKDLIANKGLLHSDQVLFNGVGSQISLVRKYSRDGAAFSRDFAAAMVKMSKISPLTGTKGEIRKNCRVVN*