Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646330 | KEH30386.1 | 98.472 | 458 | 7 | 0 | 1 | 458 | 1 | 458 | 0.0 | 959 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646330 | sp|Q949V6|ARI1_ARATH | 65.795 | 459 | 144 | 5 | 3 | 458 | 2 | 450 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646330 | A0A072ULZ9 | 98.472 | 458 | 7 | 0 | 1 | 458 | 1 | 458 | 0.0 | 959 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0646330 | 0.828254 | 9.956629e-55 | -8.615850e-47 |
| Msa0003270 | Msa0646330 | 0.830345 | 3.094805e-55 | -8.615850e-47 |
| Msa0005620 | Msa0646330 | 0.800743 | 1.249185e-48 | -8.615850e-47 |
| Msa0010770 | Msa0646330 | 0.832752 | 7.902499e-56 | -8.615850e-47 |
| Msa0013540 | Msa0646330 | 0.812196 | 4.787529e-51 | -8.615850e-47 |
| Msa0037120 | Msa0646330 | 0.824330 | 8.559146e-54 | -8.615850e-47 |
| Msa0064920 | Msa0646330 | 0.849416 | 3.280520e-60 | -8.615850e-47 |
| Msa0078480 | Msa0646330 | 0.802027 | 6.815724e-49 | -8.615850e-47 |
| Msa0084340 | Msa0646330 | 0.834740 | 2.516081e-56 | -8.615850e-47 |
| Msa0091780 | Msa0646330 | 0.816229 | 6.158983e-52 | -8.615850e-47 |
| Msa0092440 | Msa0646330 | 0.810260 | 1.259056e-50 | -8.615850e-47 |
| Msa0096580 | Msa0646330 | 0.819209 | 1.309840e-52 | -8.615850e-47 |
| Msa0621240 | Msa0646330 | 0.809018 | 2.327499e-50 | -8.615850e-47 |
| Msa0621650 | Msa0646330 | 0.801020 | 1.096578e-48 | -8.615850e-47 |
| Msa0640940 | Msa0646330 | 0.801477 | 8.840462e-49 | -8.615850e-47 |
| Msa0646330 | Msa0687450 | 0.818636 | 1.767925e-52 | -8.615850e-47 |
| Msa0646330 | Msa0689760 | 0.807828 | 4.176466e-50 | -8.615850e-47 |
| Msa0646330 | Msa0699810 | 0.802288 | 6.023916e-49 | -8.615850e-47 |
| Msa0646330 | Msa0716860 | 0.816957 | 4.230629e-52 | -8.615850e-47 |
| Msa0646330 | Msa0743530 | 0.804895 | 1.734213e-49 | -8.615850e-47 |
| Msa0646330 | Msa0749400 | 0.814359 | 1.603644e-51 | -8.615850e-47 |
| Msa0646330 | Msa0780280 | 0.830810 | 2.381682e-55 | -8.615850e-47 |
| Msa0646330 | Msa0789560 | 0.837798 | 4.201934e-57 | -8.615850e-47 |
| Msa0646330 | Msa0795660 | 0.810816 | 9.549818e-51 | -8.615850e-47 |
| Msa0646330 | Msa0821800 | 0.820933 | 5.278812e-53 | -8.615850e-47 |
| Msa0646330 | Msa0861830 | 0.839626 | 1.416108e-57 | -8.615850e-47 |
| Msa0646330 | Msa0969330 | 0.815017 | 1.146499e-51 | -8.615850e-47 |
| Msa0646330 | Msa0981310 | 0.804438 | 2.160346e-49 | -8.615850e-47 |
| Msa0646330 | Msa1036740 | 0.859899 | 3.004544e-63 | -8.615850e-47 |
| Msa0646330 | Msa1077070 | 0.834405 | 3.054346e-56 | -8.615850e-47 |
| Msa0646330 | Msa1095790 | 0.839947 | 1.168105e-57 | -8.615850e-47 |
| Msa0646330 | Msa1096550 | 0.801929 | 7.140042e-49 | -8.615850e-47 |
| Msa0646330 | Msa1122780 | 0.855073 | 8.056265e-62 | -8.615850e-47 |
| Msa0646330 | Msa1127430 | 0.833893 | 4.105604e-56 | -8.615850e-47 |
| Msa0646330 | Msa1163870 | 0.819872 | 9.242393e-53 | -8.615850e-47 |
| Msa0646330 | Msa1201640 | 0.811847 | 5.703887e-51 | -8.615850e-47 |
| Msa0646330 | Msa1205480 | 0.826179 | 3.127384e-54 | -8.615850e-47 |
| Msa0646330 | Msa1211340 | 0.823273 | 1.513681e-53 | -8.615850e-47 |
| Msa0646330 | Msa1217670 | 0.812793 | 3.545322e-51 | -8.615850e-47 |
| Msa0646330 | Msa1254620 | 0.808343 | 3.244366e-50 | -8.615850e-47 |
| Msa0646330 | Msa1259640 | 0.824847 | 6.464439e-54 | -8.615850e-47 |
| Msa0646330 | Msa1296300 | 0.835784 | 1.371230e-56 | -8.615850e-47 |
| Msa0646330 | Msa1329790 | 0.828893 | 6.979876e-55 | -8.615850e-47 |
| Msa0646330 | Msa1336040 | 0.820438 | 6.859161e-53 | -8.615850e-47 |
| Msa0646330 | Msa1341490 | 0.803750 | 3.003136e-49 | -8.615850e-47 |
| Msa0646330 | Msa1372290 | 0.803816 | 2.910553e-49 | -8.615850e-47 |
| Msa0646330 | Msa1393800 | 0.832730 | 7.999818e-56 | -8.615850e-47 |
| Msa0646330 | Msa1396940 | 0.814470 | 1.515936e-51 | -8.615850e-47 |
| Msa0646330 | Msa1401460 | 0.811525 | 6.703490e-51 | -8.615850e-47 |
| Msa0646330 | Msa1420250 | 0.807790 | 4.254424e-50 | -8.615850e-47 |
| Msa0646330 | Msa1426910 | 0.855030 | 8.290377e-62 | -8.615850e-47 |
| Msa0646330 | Msa1431170 | 0.800987 | 1.113474e-48 | -8.615850e-47 |
| Msa0646330 | Msa1433220 | 0.807243 | 5.560361e-50 | -8.615850e-47 |
| Msa0646330 | Msa1458030 | 0.801195 | 1.009812e-48 | -8.615850e-47 |
| Msa0646330 | Msa1463470 | 0.820800 | 5.664574e-53 | -8.615850e-47 |
| Msa0646330 | Msa1466590 | 0.803915 | 2.775038e-49 | -8.615850e-47 |
| Msa0126230 | Msa0646330 | 0.814876 | 1.232296e-51 | -8.615850e-47 |
| Msa0131290 | Msa0646330 | 0.804500 | 2.097286e-49 | -8.615850e-47 |
| Msa0138210 | Msa0646330 | 0.856945 | 2.282781e-62 | -8.615850e-47 |
| Msa0174360 | Msa0646330 | 0.844145 | 9.063754e-59 | -8.615850e-47 |
| Msa0177170 | Msa0646330 | 0.852005 | 6.130121e-61 | -8.615850e-47 |
| Msa0183420 | Msa0646330 | 0.840080 | 1.078128e-57 | -8.615850e-47 |
| Msa0194720 | Msa0646330 | 0.804007 | 2.655789e-49 | -8.615850e-47 |
| Msa0202730 | Msa0646330 | 0.833818 | 4.286021e-56 | -8.615850e-47 |
| Msa0232340 | Msa0646330 | 0.807428 | 5.079911e-50 | -8.615850e-47 |
| Msa0377440 | Msa0646330 | 0.807166 | 5.772668e-50 | -8.615850e-47 |
| Msa0390960 | Msa0646330 | 0.801170 | 1.021865e-48 | -8.615850e-47 |
| Msa0395980 | Msa0646330 | 0.808696 | 2.728048e-50 | -8.615850e-47 |
| Msa0417650 | Msa0646330 | 0.832986 | 6.910199e-56 | -8.615850e-47 |
| Msa0417730 | Msa0646330 | 0.841253 | 5.315411e-58 | -8.615850e-47 |
| Msa0423840 | Msa0646330 | 0.838228 | 3.257832e-57 | -8.615850e-47 |
| Msa0442310 | Msa0646330 | 0.808545 | 2.938550e-50 | -8.615850e-47 |
| Msa0446900 | Msa0646330 | 0.804395 | 2.204928e-49 | -8.615850e-47 |
| Msa0269520 | Msa0646330 | 0.825676 | 4.116567e-54 | -8.615850e-47 |
| Msa0271790 | Msa0646330 | 0.808821 | 2.565656e-50 | -8.615850e-47 |
| Msa0279390 | Msa0646330 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0280110 | Msa0646330 | 0.818901 | 1.538585e-52 | -8.615850e-47 |
| Msa0280150 | Msa0646330 | 0.812029 | 5.207909e-51 | -8.615850e-47 |
| Msa0301810 | Msa0646330 | 0.827434 | 1.567690e-54 | -8.615850e-47 |
| Msa0310430 | Msa0646330 | 0.802351 | 5.846717e-49 | -8.615850e-47 |
| Msa0318880 | Msa0646330 | 0.811564 | 6.573790e-51 | -8.615850e-47 |
| Msa0510290 | Msa0646330 | 0.806919 | 6.510526e-50 | -8.615850e-47 |
| Msa0518960 | Msa0646330 | 0.822669 | 2.093238e-53 | -8.615850e-47 |
| Msa0547680 | Msa0646330 | 0.824318 | 8.611827e-54 | -8.615850e-47 |
| Msa0582280 | Msa0646330 | 0.811074 | 8.397449e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646330 | MtrunA17_Chr4g0034371 | 98.472 | 458 | 7 | 0 | 1 | 458 | 1 | 458 | 0.0 | 956 |
| Msa0646330 | MtrunA17_Chr4g0033361 | 31.651 | 436 | 258 | 11 | 48 | 454 | 61 | 485 | 8.04e-58 | 203 |
| Msa0646330 | MtrunA17_Chr2g0329221 | 30.941 | 404 | 255 | 10 | 48 | 438 | 71 | 463 | 7.85e-56 | 198 |
| Msa0646330 | MtrunA17_Chr3g0110331 | 30.769 | 403 | 252 | 10 | 49 | 438 | 57 | 445 | 1.30e-54 | 194 |
| Msa0646330 | MtrunA17_Chr3g0110341 | 30.695 | 417 | 262 | 12 | 49 | 456 | 84 | 482 | 4.41e-51 | 185 |
| Msa0646330 | MtrunA17_Chr4g0034491 | 97.849 | 93 | 2 | 0 | 477 | 569 | 665 | 757 | 2.95e-46 | 173 |
| Msa0646330 | MtrunA17_Chr4g0038181 | 29.440 | 411 | 220 | 15 | 48 | 430 | 7 | 375 | 2.12e-43 | 160 |
| Msa0646330 | MtrunA17_Chr5g0447801 | 34.146 | 205 | 120 | 5 | 245 | 438 | 2 | 202 | 9.24e-28 | 113 |
| Msa0646330 | MtrunA17_Chr4g0038201 | 23.269 | 361 | 186 | 11 | 19 | 356 | 7 | 299 | 6.39e-23 | 100 |
| Msa0646330 | MtrunA17_Chr1g0164621 | 28.378 | 222 | 139 | 9 | 100 | 315 | 1225 | 1432 | 5.67e-14 | 75.5 |
| Msa0646330 | MtrunA17_Chr5g0410911 | 24.000 | 225 | 120 | 6 | 126 | 318 | 322 | 527 | 1.37e-13 | 73.6 |
| Msa0646330 | MtrunA17_Chr3g0082091 | 27.928 | 222 | 140 | 9 | 100 | 315 | 1223 | 1430 | 1.85e-13 | 73.9 |
| Msa0646330 | MtrunA17_Chr3g0123681 | 30.256 | 195 | 124 | 7 | 126 | 315 | 1523 | 1710 | 1.68e-11 | 67.4 |
| Msa0646330 | MtrunA17_Chr4g0019701 | 47.826 | 92 | 44 | 3 | 477 | 565 | 689 | 779 | 4.15e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646330 | AT4G34370.1 | 65.795 | 459 | 144 | 5 | 3 | 458 | 2 | 450 | 0.0 | 646 |
| Msa0646330 | AT2G16090.4 | 66.955 | 463 | 136 | 7 | 1 | 458 | 1 | 451 | 0.0 | 642 |
| Msa0646330 | AT2G16090.1 | 66.955 | 463 | 136 | 7 | 1 | 458 | 1 | 451 | 0.0 | 641 |
| Msa0646330 | AT2G16090.3 | 66.955 | 463 | 136 | 7 | 1 | 458 | 1 | 451 | 0.0 | 641 |
| Msa0646330 | AT2G16090.2 | 70.529 | 397 | 107 | 4 | 66 | 458 | 1 | 391 | 0.0 | 594 |
| Msa0646330 | AT2G16090.5 | 70.529 | 397 | 107 | 4 | 66 | 458 | 1 | 391 | 0.0 | 592 |
| Msa0646330 | AT3G27710.1 | 60.369 | 434 | 159 | 7 | 29 | 458 | 26 | 450 | 0.0 | 543 |
| Msa0646330 | AT4G34370.2 | 74.048 | 289 | 68 | 3 | 171 | 458 | 1 | 283 | 5.31e-161 | 466 |
| Msa0646330 | AT3G27720.1 | 66.292 | 267 | 85 | 3 | 194 | 458 | 147 | 410 | 3.77e-127 | 382 |
| Msa0646330 | AT2G31510.2 | 30.833 | 480 | 302 | 12 | 2 | 465 | 18 | 483 | 1.34e-62 | 214 |
| Msa0646330 | AT2G31510.1 | 30.833 | 480 | 302 | 12 | 2 | 465 | 18 | 483 | 4.01e-62 | 214 |
| Msa0646330 | AT2G31510.3 | 31.354 | 421 | 263 | 10 | 60 | 465 | 2 | 411 | 2.50e-60 | 208 |
| Msa0646330 | AT2G31770.1 | 28.935 | 432 | 274 | 13 | 14 | 426 | 3 | 420 | 7.09e-60 | 208 |
| Msa0646330 | AT2G31780.1 | 31.207 | 439 | 265 | 15 | 4 | 433 | 28 | 438 | 1.05e-59 | 205 |
| Msa0646330 | AT1G05890.1 | 31.542 | 428 | 264 | 12 | 14 | 426 | 23 | 436 | 7.92e-57 | 200 |
| Msa0646330 | AT2G31760.1 | 30.479 | 397 | 249 | 13 | 48 | 438 | 45 | 420 | 1.83e-55 | 195 |
| Msa0646330 | AT1G05890.2 | 31.378 | 392 | 244 | 9 | 48 | 426 | 99 | 478 | 6.92e-55 | 196 |
| Msa0646330 | AT1G65430.1 | 30.361 | 471 | 283 | 16 | 2 | 445 | 4 | 456 | 1.83e-54 | 194 |
| Msa0646330 | AT3G18860.1 | 71.739 | 92 | 26 | 0 | 477 | 568 | 669 | 760 | 1.37e-31 | 130 |
| Msa0646330 | AT5G08730.1 | 26.634 | 413 | 262 | 15 | 48 | 448 | 10 | 393 | 1.41e-31 | 128 |
| Msa0646330 | AT3G18860.2 | 71.739 | 92 | 26 | 0 | 477 | 568 | 669 | 760 | 2.04e-31 | 130 |
| Msa0646330 | AT1G05880.3 | 22.038 | 422 | 297 | 11 | 46 | 458 | 39 | 437 | 5.04e-23 | 102 |
| Msa0646330 | AT1G05880.2 | 22.038 | 422 | 297 | 11 | 46 | 458 | 39 | 437 | 5.75e-23 | 102 |
| Msa0646330 | AT1G05880.1 | 21.986 | 423 | 289 | 11 | 46 | 458 | 39 | 430 | 3.84e-21 | 97.4 |
| Msa0646330 | AT5G63750.1 | 26.797 | 306 | 177 | 14 | 48 | 315 | 11 | 307 | 8.30e-19 | 90.5 |
| Msa0646330 | AT5G63730.1 | 27.719 | 285 | 181 | 11 | 48 | 315 | 11 | 287 | 3.25e-17 | 85.1 |
| Msa0646330 | AT5G63760.1 | 30.973 | 226 | 120 | 13 | 120 | 315 | 20 | 239 | 1.06e-15 | 80.1 |
| Msa0646330 | AT5G63760.3 | 30.973 | 226 | 120 | 13 | 120 | 315 | 20 | 239 | 1.06e-15 | 80.1 |
| Msa0646330 | AT5G63760.2 | 30.973 | 226 | 120 | 13 | 120 | 315 | 20 | 239 | 1.06e-15 | 80.1 |
| Msa0646330 | AT3G14250.1 | 29.864 | 221 | 128 | 11 | 125 | 333 | 94 | 299 | 3.27e-15 | 77.0 |
| Msa0646330 | AT1G32340.1 | 27.027 | 222 | 128 | 7 | 126 | 323 | 378 | 589 | 1.06e-14 | 77.8 |
| Msa0646330 | AT5G10370.1 | 26.633 | 199 | 137 | 6 | 120 | 315 | 1558 | 1750 | 1.59e-13 | 74.7 |
| Msa0646330 | AT2G26135.1 | 30.882 | 204 | 123 | 9 | 126 | 320 | 153 | 347 | 8.79e-13 | 70.5 |
| Msa0646330 | AT4G01020.1 | 26.154 | 195 | 131 | 7 | 126 | 315 | 1561 | 1747 | 1.57e-12 | 71.2 |
| Msa0646330 | AT2G26130.1 | 29.327 | 208 | 122 | 9 | 126 | 320 | 159 | 354 | 8.43e-12 | 67.8 |
| Msa0646330 | AT5G63760.4 | 33.835 | 133 | 71 | 7 | 199 | 315 | 2 | 133 | 1.60e-11 | 66.6 |
Find 115 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTACTTTCAAGCTTAA+AGG | 0.141595 | 4_3:-52061279 | None:intergenic |
| AGATTAGGGTTTATATTATT+TGG | 0.154369 | 4_3:-52058598 | None:intergenic |
| TTTGAAGTTTATGTAGAAAA+AGG | 0.183191 | 4_3:+52059772 | Msa0646330:CDS |
| AGCAACTAAAGCACGAAATT+TGG | 0.240275 | 4_3:-52063303 | None:intergenic |
| TCATACTTCTCTGCCATATC+AGG | 0.290091 | 4_3:-52060525 | None:intergenic |
| ATGAATCAGAAACTGTTAAT+TGG | 0.291470 | 4_3:+52060763 | Msa0646330:CDS |
| GTATTTGCGGCCAAGCATTT+TGG | 0.310007 | 4_3:+52060862 | Msa0646330:CDS |
| AGTGCTATTGATTGAATCTA+AGG | 0.312908 | 4_3:+52062296 | Msa0646330:CDS |
| GATCAGAAGAAGGTAGATTA+GGG | 0.325754 | 4_3:-52058612 | None:intergenic |
| GTGGGAATGCAATTCGTGTT+GGG | 0.340005 | 4_3:+52060616 | Msa0646330:CDS |
| GATTATAGCTGGGTAAATAA+TGG | 0.340008 | 4_3:+52061374 | Msa0646330:CDS |
| CGTGTTTGATGTGGGAGCTC+TGG | 0.345421 | 4_3:+52060724 | Msa0646330:CDS |
| TGATCAGAAGAAGGTAGATT+AGG | 0.350105 | 4_3:-52058613 | None:intergenic |
| AGATCCTACTTCAGCAATCT+TGG | 0.375918 | 4_3:-52064027 | None:intergenic |
| CTCCCACATCAAACACGAAC+AGG | 0.384521 | 4_3:-52060718 | None:intergenic |
| AGGGTTTATATTATTTGGAT+TGG | 0.385627 | 4_3:-52058593 | None:intergenic |
| TCTCTTATTGTCTTCAATGT+AGG | 0.390159 | 4_3:-52060565 | None:intergenic |
| AAAAGCGGCAAAGGGTTCTA+AGG | 0.400208 | 4_3:+52064001 | Msa0646330:CDS |
| TAATGCTTATTTATCATCGT+TGG | 0.400236 | 4_3:+52059734 | Msa0646330:CDS |
| TTTAGTTGCTGTTGGATCAC+TGG | 0.408298 | 4_3:+52063316 | Msa0646330:CDS |
| TTCTATTGCTCCCGCTGCTC+AGG | 0.411819 | 4_3:+52058772 | Msa0646330:CDS |
| AAGACAATAAGAGAGTTAAA+TGG | 0.413854 | 4_3:+52060574 | Msa0646330:CDS |
| CTGAACTCAATGATTATAGC+TGG | 0.414125 | 4_3:+52061363 | Msa0646330:CDS |
| TGGTAGAAAGCACCCTGATA+TGG | 0.419498 | 4_3:+52060512 | Msa0646330:CDS |
| ATTCTTGTTGCTTCATCACT+AGG | 0.422785 | 4_3:-52059901 | None:intergenic |
| GGATCAACAGCAGCAGTTAG+AGG | 0.425749 | 4_3:+52061529 | Msa0646330:CDS |
| GCATTTATGTTTGCTCAGGC+TGG | 0.428355 | 4_3:+52059799 | Msa0646330:CDS |
| AATGCTTATTTATCATCGTT+GGG | 0.432983 | 4_3:+52059735 | Msa0646330:CDS |
| TTCCCACAATGTGGCGTGCT+CGG | 0.435694 | 4_3:-52060600 | None:intergenic |
| CGGTTTGTGGCACTTTGGAC+AGG | 0.440450 | 4_3:-52060805 | None:intergenic |
| AAAGCACGAAATTTGGAATC+AGG | 0.440555 | 4_3:-52063296 | None:intergenic |
| TTCTTCTTCGACGTCTTGAT+CGG | 0.440913 | 4_3:-52058696 | None:intergenic |
| CTACTGGCCGTGATCATACT+TGG | 0.451535 | 4_3:+52061135 | Msa0646330:CDS |
| TTTCGTGCTTTAGTTGCTGT+TGG | 0.452911 | 4_3:+52063308 | Msa0646330:CDS |
| GAAGGCATTTATGTTTGCTC+AGG | 0.464709 | 4_3:+52059795 | Msa0646330:CDS |
| TGGTTGTGTGGTGGAGCTAC+TGG | 0.468440 | 4_3:+52061119 | Msa0646330:CDS |
| TATTTATCATCGTTGGGATG+TGG | 0.476215 | 4_3:+52059741 | Msa0646330:CDS |
| GGTACATGCATTATCATAAC+CGG | 0.485862 | 4_3:+52061237 | Msa0646330:CDS |
| ACAAATGTCAGAAGCTGAAA+GGG | 0.487072 | 4_3:+52061484 | Msa0646330:CDS |
| GGGCAAAGAGGGATCTCTAT+AGG | 0.491647 | 4_3:+52061216 | Msa0646330:CDS |
| AATGAAACAGAACTTATTTG+AGG | 0.494812 | 4_3:+52061508 | Msa0646330:CDS |
| TAGTGATGAAGCAACAAGAA+TGG | 0.496144 | 4_3:+52059903 | Msa0646330:CDS |
| GTCCGAGCACGCCACATTGT+GGG | 0.497626 | 4_3:+52060598 | Msa0646330:CDS |
| GAGTATTGCAAAAGCGGCAA+AGG | 0.499100 | 4_3:+52063992 | Msa0646330:CDS |
| CATACTTGGTCAAGTATAGC+TGG | 0.500185 | 4_3:+52061149 | Msa0646330:CDS |
| CTGTCCAAAGTGCCACAAAC+CGG | 0.503790 | 4_3:+52060806 | Msa0646330:CDS |
| TATTATTTGGATTGGATCGA+GGG | 0.504087 | 4_3:-52058585 | None:intergenic |
| TCAAGAGAAATCAGCTGAGC+GGG | 0.505415 | 4_3:+52061196 | Msa0646330:CDS |
| AATTTGGTTAGCTGTATTTG+CGG | 0.507682 | 4_3:+52060849 | Msa0646330:CDS |
| GGAGGACTTGCGCAGAGTGA+TGG | 0.509123 | 4_3:+52059678 | Msa0646330:CDS |
| GTGTTTGATGTGGGAGCTCT+GGG | 0.510947 | 4_3:+52060725 | Msa0646330:CDS |
| ATCAGCTGAGCGGGCAAAGA+GGG | 0.511484 | 4_3:+52061205 | Msa0646330:CDS |
| ATATCATGACTCTGGCTCGC+TGG | 0.511966 | 4_3:+52059837 | Msa0646330:CDS |
| TCCACCGGTTTGTGGCACTT+TGG | 0.517904 | 4_3:-52060810 | None:intergenic |
| TGGGAATGCAATTCGTGTTG+GGG | 0.518482 | 4_3:+52060617 | Msa0646330:CDS |
| AGTATTGCAAAAGCGGCAAA+GGG | 0.524645 | 4_3:+52063993 | Msa0646330:CDS |
| ATATTATTTGGATTGGATCG+AGG | 0.525334 | 4_3:-52058586 | None:intergenic |
| GCTGTCGTAAGAACTTTACT+TGG | 0.526473 | 4_3:+52060492 | Msa0646330:CDS |
| AACAAATGTCAGAAGCTGAA+AGG | 0.528651 | 4_3:+52061483 | Msa0646330:CDS |
| AAGGAAGGAACCTGAGCAGC+GGG | 0.534714 | 4_3:-52058782 | None:intergenic |
| TGTGGGAATGCAATTCGTGT+TGG | 0.535934 | 4_3:+52060615 | Msa0646330:CDS |
| CTGTACAGTTGGTTGTGTGG+TGG | 0.539491 | 4_3:+52061110 | Msa0646330:intron |
| GGAATACTCACCAAAATGCT+TGG | 0.544949 | 4_3:-52060872 | None:intergenic |
| CCCCTGTTCGTGTTTGATGT+GGG | 0.548928 | 4_3:+52060716 | Msa0646330:CDS |
| CAATTCACTATTCAAATCGA+TGG | 0.555614 | 4_3:+52058634 | Msa0646330:exon |
| GACACAGCATTTCTTTGTCA+AGG | 0.556593 | 4_3:+52060404 | Msa0646330:CDS |
| ATAGTGAATTGATCAGAAGA+AGG | 0.557738 | 4_3:-52058622 | None:intergenic |
| TGTTCTATCAGCAGCACTTG+AGG | 0.557792 | 4_3:+52062338 | Msa0646330:CDS |
| AGTCTGTGTGAGCTTTATAC+CGG | 0.559653 | 4_3:-52061256 | None:intergenic |
| TGTCCGAGCACGCCACATTG+TGG | 0.561018 | 4_3:+52060597 | Msa0646330:CDS |
| GTTATTGCATGCTTACATTG+TGG | 0.563138 | 4_3:-52062243 | None:intergenic |
| GGAATCACTGATAGTTGCAC+AGG | 0.563375 | 4_3:+52059557 | Msa0646330:CDS |
| CATACTTCTCTGCCATATCA+GGG | 0.565467 | 4_3:-52060524 | None:intergenic |
| TGCTCAGGCTGGTGTTAGTG+TGG | 0.573538 | 4_3:+52059810 | Msa0646330:CDS |
| TGAACTCAATGATTATAGCT+GGG | 0.579869 | 4_3:+52061364 | Msa0646330:CDS |
| AAACTGAAAGATATCATACA+AGG | 0.580876 | 4_3:+52061296 | Msa0646330:CDS |
| TTTCTGTACAGTTGGTTGTG+TGG | 0.585716 | 4_3:+52061107 | Msa0646330:intron |
| AAGTAAACGCATCAGATGCA+TGG | 0.588761 | 4_3:+52060440 | Msa0646330:CDS |
| GTGGATGAATATCATGACTC+TGG | 0.592583 | 4_3:+52059829 | Msa0646330:CDS |
| TGTGCTGTGTTGTGTGTGTG+TGG | 0.593815 | 4_3:+52058495 | Msa0646330:five_prime_UTR |
| ATTGAATCTAAGGATCAAGA+AGG | 0.596449 | 4_3:+52062306 | Msa0646330:CDS |
| CAAACGCATATGAATATGAA+AGG | 0.599466 | 4_3:-52061427 | None:intergenic |
| CGACGACAAAAGTGAAGGGA+AGG | 0.599701 | 4_3:-52058529 | None:intergenic |
| ATTCCGACGACAAAAGTGAA+GGG | 0.601275 | 4_3:-52058533 | None:intergenic |
| ATCAAGAGAAATCAGCTGAG+CGG | 0.602973 | 4_3:+52061195 | Msa0646330:CDS |
| TTCTTTGTCAAGGTAAACGA+GGG | 0.608990 | 4_3:+52060414 | Msa0646330:CDS |
| AATTCCGACGACAAAAGTGA+AGG | 0.611696 | 4_3:-52058534 | None:intergenic |
| GGAGTATTGATAATCTTCAT+CGG | 0.611843 | 4_3:-52058675 | None:intergenic |
| TCCCACATCAAACACGAACA+GGG | 0.614215 | 4_3:-52060717 | None:intergenic |
| GAGGATCACATCAAAAGTCA+AGG | 0.615612 | 4_3:-52062265 | None:intergenic |
| GCAGCGGGAGCAATAGAAGA+GGG | 0.626117 | 4_3:-52058767 | None:intergenic |
| TACTTGACCAAGTATGATCA+CGG | 0.628425 | 4_3:-52061142 | None:intergenic |
| AGTAATGTGTGAAATTTGCA+TGG | 0.628812 | 4_3:+52059870 | Msa0646330:CDS |
| AGCAGCGGGAGCAATAGAAG+AGG | 0.631344 | 4_3:-52058768 | None:intergenic |
| AGTATAGCTGGTCACAGCTG+TGG | 0.637100 | 4_3:+52061161 | Msa0646330:CDS |
| GACTCCAAGATTGCTGAAGT+AGG | 0.638044 | 4_3:+52064023 | Msa0646330:CDS |
| TCCAAAGTGCCACAAACCGG+TGG | 0.641185 | 4_3:+52060809 | Msa0646330:CDS |
| TCAATAGCACTGCGTAACTG+AGG | 0.645503 | 4_3:-52062284 | None:intergenic |
| AATCAGCTGAGCGGGCAAAG+AGG | 0.650192 | 4_3:+52061204 | Msa0646330:CDS |
| GGGAATGCAATTCGTGTTGG+GGG | 0.651226 | 4_3:+52060618 | Msa0646330:CDS |
| CCCACATCAAACACGAACAG+GGG | 0.653511 | 4_3:-52060716 | None:intergenic |
| ATTATTTGGATTGGATCGAG+GGG | 0.658616 | 4_3:-52058584 | None:intergenic |
| GAAGGAAGGAACCTGAGCAG+CGG | 0.659810 | 4_3:-52058783 | None:intergenic |
| TTATTTGGATTGGATCGAGG+GGG | 0.659930 | 4_3:-52058583 | None:intergenic |
| TTTCTTTGTCAAGGTAAACG+AGG | 0.661438 | 4_3:+52060413 | Msa0646330:CDS |
| CGAATTGCATTCCCACAATG+TGG | 0.661456 | 4_3:-52060609 | None:intergenic |
| GGGTGATGATGACTTGTGTG+AGG | 0.663158 | 4_3:+52060638 | Msa0646330:CDS |
| GTATTGATAATCTTCATCGG+TGG | 0.663176 | 4_3:-52058672 | None:intergenic |
| ACACTTGCAGGTGATTACGA+AGG | 0.665460 | 4_3:+52059536 | Msa0646330:intron |
| CCACATCAAACACGAACAGG+GGG | 0.666654 | 4_3:-52060715 | None:intergenic |
| AACTGAAAGATATCATACAA+GGG | 0.667662 | 4_3:+52061297 | Msa0646330:CDS |
| GTCGAAGAAGAAGATTCCGT+CGG | 0.701998 | 4_3:+52058707 | Msa0646330:CDS |
| GATTGTCGAGGATGAAAACG+TGG | 0.708560 | 4_3:+52063271 | Msa0646330:intron |
| TGTGAGGTAGAATGTTCATG+TGG | 0.730408 | 4_3:+52060654 | Msa0646330:CDS |
| GAAGCAACAAGAATGGACTG+TGG | 0.810129 | 4_3:+52059910 | Msa0646330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAAAAAAT+AGG | - | chr4_3:52060294-52060313 | None:intergenic | 0.0% |
| !! | ATCGAATAAAAAAAAAAAAA+AGG | - | chr4_3:52058831-52058850 | None:intergenic | 10.0% |
| !!! | TTTATTTATTGATTAAAGTT+TGG | + | chr4_3:52058926-52058945 | Msa0646330:intron | 10.0% |
| !! | ATTCTATAACAATATATAAA+GGG | - | chr4_3:52061817-52061836 | None:intergenic | 10.0% |
| !! | TATTCTATAACAATATATAA+AGG | - | chr4_3:52061818-52061837 | None:intergenic | 10.0% |
| !!! | AAAAGATAAACATATTTTAT+AGG | + | chr4_3:52062982-52063001 | Msa0646330:intron | 10.0% |
| !!! | AAAGATAAACATATTTTATA+GGG | + | chr4_3:52062983-52063002 | Msa0646330:intron | 10.0% |
| !!! | TCTATGGTTATATATTTTAT+TGG | + | chr4_3:52059234-52059253 | Msa0646330:intron | 15.0% |
| !!! | TTATTGTATGATTTTATTGA+AGG | + | chr4_3:52059338-52059357 | Msa0646330:intron | 15.0% |
| !! | AAAAAAAAAAAAACACTAAC+AGG | - | chr4_3:52059953-52059972 | None:intergenic | 15.0% |
| !!! | TTTTGAAGAAGAAAAAATAA+GGG | - | chr4_3:52059994-52060013 | None:intergenic | 15.0% |
| !!! | ATTTTGAAGAAGAAAAAATA+AGG | - | chr4_3:52059995-52060014 | None:intergenic | 15.0% |
| !! | AAGAAACATAAATTATTTCA+TGG | - | chr4_3:52060948-52060967 | None:intergenic | 15.0% |
| !! | ATGAAATAATTTATGTTTCT+TGG | + | chr4_3:52060947-52060966 | Msa0646330:intron | 15.0% |
| !! | NNNNAGTTTAGCATATTTAA+AGG | - | chr4_3:52061600-52061619 | None:intergenic | 15.0% |
| !! | TTCTATAACAATATATAAAG+GGG | - | chr4_3:52061816-52061835 | None:intergenic | 15.0% |
| !!! | AAGTAATAGGAATATTTTAT+TGG | - | chr4_3:52061846-52061865 | None:intergenic | 15.0% |
| !! | TAATTAGTAAGTAATGAATA+GGG | - | chr4_3:52061872-52061891 | None:intergenic | 15.0% |
| !! | AAATTAGAGATTACATATAA+TGG | - | chr4_3:52063081-52063100 | None:intergenic | 15.0% |
| !! | AGTTTGAAAATAATTAATAG+TGG | - | chr4_3:52063628-52063647 | None:intergenic | 15.0% |
| !! | AGATTAGGGTTTATATTATT+TGG | - | chr4_3:52058601-52058620 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGTTGAGTTTC+TGG | + | chr4_3:52058972-52058991 | Msa0646330:intron | 20.0% |
| !! | TAGTTTAGCTATTAAATTGA+CGG | - | chr4_3:52059030-52059049 | None:intergenic | 20.0% |
| !!! | TTTTGTGTTTATTTAGTCTA+TGG | + | chr4_3:52059218-52059237 | Msa0646330:intron | 20.0% |
| !!! | TTTGAAGTTTATGTAGAAAA+AGG | + | chr4_3:52059772-52059791 | Msa0646330:CDS | 20.0% |
| !! | TTGAAGTTTATGTAGAAAAA+GGG | + | chr4_3:52059773-52059792 | Msa0646330:CDS | 20.0% |
| !! | TTTCTTCTTCAAAATTTCAT+CGG | + | chr4_3:52060000-52060019 | Msa0646330:intron | 20.0% |
| !! | TGGAAAAATTACATTAACTT+TGG | + | chr4_3:52060361-52060380 | Msa0646330:intron | 20.0% |
| !! | TTGTTGTATGTATCATAATA+TGG | + | chr4_3:52061037-52061056 | Msa0646330:intron | 20.0% |
| !! | TAGGAAAATAGTTTAAATGA+AGG | + | chr4_3:52061750-52061769 | Msa0646330:intron | 20.0% |
| !! | AGGAAAATAGTTTAAATGAA+GGG | + | chr4_3:52061751-52061770 | Msa0646330:intron | 20.0% |
| !! | GTAATTAGTAAGTAATGAAT+AGG | - | chr4_3:52061873-52061892 | None:intergenic | 20.0% |
| !!! | AAATAATTTTAGCTTGTCTA+GGG | - | chr4_3:52061993-52062012 | None:intergenic | 20.0% |
| !!! | AAAATAATTTTAGCTTGTCT+AGG | - | chr4_3:52061994-52062013 | None:intergenic | 20.0% |
| !!! | TTTGGATTTTTTTTTTTGCT+TGG | + | chr4_3:52062072-52062091 | Msa0646330:intron | 20.0% |
| !! | AACAAAATGATTTCTCATTA+AGG | + | chr4_3:52062486-52062505 | Msa0646330:intron | 20.0% |
| !!! | TTTCTCATTAAGGATTTTTT+CGG | + | chr4_3:52062496-52062515 | Msa0646330:intron | 20.0% |
| !!! | ATTTGAGGATATTAGTTTTT+GGG | - | chr4_3:52062882-52062901 | None:intergenic | 20.0% |
| !!! | AATTTGAGGATATTAGTTTT+TGG | - | chr4_3:52062883-52062902 | None:intergenic | 20.0% |
| !! | TAATATAGAATTGTTGTGTT+GGG | + | chr4_3:52063042-52063061 | Msa0646330:intron | 20.0% |
| !! | TCTCAAATTAGCAATATTTA+GGG | - | chr4_3:52063108-52063127 | None:intergenic | 20.0% |
| !! | AACAAAAACAAAATGCATAT+TGG | - | chr4_3:52063249-52063268 | None:intergenic | 20.0% |
| !! | AATAAATGGACAATATCATT+TGG | + | chr4_3:52063548-52063567 | Msa0646330:intron | 20.0% |
| !! | TGAAAATAATTAATAGTGGT+GGG | - | chr4_3:52063624-52063643 | None:intergenic | 20.0% |
| !! | TTGAAAATAATTAATAGTGG+TGG | - | chr4_3:52063625-52063644 | None:intergenic | 20.0% |
| ! | AGGGTTTATATTATTTGGAT+TGG | - | chr4_3:52058596-52058615 | None:intergenic | 25.0% |
| ! | AATGAAAATGAAAAGGTTGA+AGG | - | chr4_3:52058804-52058823 | None:intergenic | 25.0% |
| ! | AGGTTTGAATGAAAATGAAA+AGG | - | chr4_3:52058811-52058830 | None:intergenic | 25.0% |
| !! | TTGATTAAAGTTTGGAACTT+TGG | + | chr4_3:52058934-52058953 | Msa0646330:intron | 25.0% |
| ! | ATTCTTGCTCAATTTATTGA+AGG | + | chr4_3:52059172-52059191 | Msa0646330:intron | 25.0% |
| !! | TTGAAATGTTTCTGTTATCA+TGG | + | chr4_3:52059370-52059389 | Msa0646330:intron | 25.0% |
| ! | TAATATTAACCACTAGAAGT+TGG | - | chr4_3:52059431-52059450 | None:intergenic | 25.0% |
| ! | TAATGCTTATTTATCATCGT+TGG | + | chr4_3:52059734-52059753 | Msa0646330:CDS | 25.0% |
| ! | AATGCTTATTTATCATCGTT+GGG | + | chr4_3:52059735-52059754 | Msa0646330:CDS | 25.0% |
| ! | GAATTCTTAATGTTACATGA+TGG | + | chr4_3:52060037-52060056 | Msa0646330:intron | 25.0% |
| ! | AAGATTCATATAACCAATCA+AGG | + | chr4_3:52060241-52060260 | Msa0646330:intron | 25.0% |
| ! | AAGACAATAAGAGAGTTAAA+TGG | + | chr4_3:52060574-52060593 | Msa0646330:CDS | 25.0% |
| ! | ATGAATCAGAAACTGTTAAT+TGG | + | chr4_3:52060763-52060782 | Msa0646330:CDS | 25.0% |
| ! | TGAGAATATATAATGCAAGA+AGG | - | chr4_3:52060896-52060915 | None:intergenic | 25.0% |
| ! | TATGTATCATAATATGGATC+AGG | + | chr4_3:52061043-52061062 | Msa0646330:intron | 25.0% |
| ! | AAAATGGGCAAAATTATTAC+TGG | - | chr4_3:52061090-52061109 | None:intergenic | 25.0% |
| ! | AAACTGAAAGATATCATACA+AGG | + | chr4_3:52061296-52061315 | Msa0646330:CDS | 25.0% |
| ! | AACTGAAAGATATCATACAA+GGG | + | chr4_3:52061297-52061316 | Msa0646330:CDS | 25.0% |
| ! | ATTACAGAAGAAAAACATTC+TGG | + | chr4_3:52061329-52061348 | Msa0646330:CDS | 25.0% |
| ! | AATGAAACAGAACTTATTTG+AGG | + | chr4_3:52061508-52061527 | Msa0646330:CDS | 25.0% |
| !!! | TGAAAAACTCTCTAAGATTT+TGG | + | chr4_3:52061559-52061578 | Msa0646330:intron | 25.0% |
| ! | GTTTAAATGAAGGGTAAAAT+TGG | + | chr4_3:52061760-52061779 | Msa0646330:intron | 25.0% |
| ! | TTCAAGGAAACAACTTATTT+AGG | - | chr4_3:52062042-52062061 | None:intergenic | 25.0% |
| ! | ATTAAGTATAGACAGTAAAG+CGG | + | chr4_3:52062129-52062148 | Msa0646330:intron | 25.0% |
| !! | TTTCAGAACTGCAATTTTAT+TGG | + | chr4_3:52062219-52062238 | Msa0646330:intron | 25.0% |
| !!! | ATTAAGGATTTTTTCGGTAT+CGG | + | chr4_3:52062502-52062521 | Msa0646330:intron | 25.0% |
| !!! | TACAGGTTTTGTTCTATATT+TGG | - | chr4_3:52062686-52062705 | None:intergenic | 25.0% |
| !! | TGATAGCTAGCTTAATTATA+GGG | - | chr4_3:52062768-52062787 | None:intergenic | 25.0% |
| !! | TTGATAGCTAGCTTAATTAT+AGG | - | chr4_3:52062769-52062788 | None:intergenic | 25.0% |
| ! | ATAATTAAGCTAGCTATCAA+AGG | + | chr4_3:52062769-52062788 | Msa0646330:intron | 25.0% |
| ! | TAATTAAGCTAGCTATCAAA+GGG | + | chr4_3:52062770-52062789 | Msa0646330:intron | 25.0% |
| ! | ATGCTCATTGAATACTTAAA+TGG | - | chr4_3:52062808-52062827 | None:intergenic | 25.0% |
| !!! | TGCGATTTTTCTTTAATTTG+AGG | - | chr4_3:52062897-52062916 | None:intergenic | 25.0% |
| !!! | TTAGTTTTCTTAACAAGTGT+GGG | - | chr4_3:52063025-52063044 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTCTTAACAAGTG+TGG | - | chr4_3:52063026-52063045 | None:intergenic | 25.0% |
| ! | CTAATATAGAATTGTTGTGT+TGG | + | chr4_3:52063041-52063060 | Msa0646330:intron | 25.0% |
| ! | CTCAAATTAGCAATATTTAG+GGG | - | chr4_3:52063107-52063126 | None:intergenic | 25.0% |
| ! | GTCTCAAATTAGCAATATTT+AGG | - | chr4_3:52063109-52063128 | None:intergenic | 25.0% |
| ! | TAGAACGGTAATAAATGAAT+TGG | - | chr4_3:52063490-52063509 | None:intergenic | 25.0% |
| ! | CTCCATTTGCTTAAAATAAA+TGG | + | chr4_3:52063534-52063553 | Msa0646330:intron | 25.0% |
| !!! | GTCCATTTATTTTAAGCAAA+TGG | - | chr4_3:52063539-52063558 | None:intergenic | 25.0% |
| !! | AGATACAAAAAAGTATGTAG+TGG | + | chr4_3:52063579-52063598 | Msa0646330:intron | 25.0% |
| !! | GATACAAAAAAGTATGTAGT+GGG | + | chr4_3:52063580-52063599 | Msa0646330:intron | 25.0% |
| ! | TATTATTTGGATTGGATCGA+GGG | - | chr4_3:52058588-52058607 | None:intergenic | 30.0% |
| ! | ATATTATTTGGATTGGATCG+AGG | - | chr4_3:52058589-52058608 | None:intergenic | 30.0% |
| ATAGTGAATTGATCAGAAGA+AGG | - | chr4_3:52058625-52058644 | None:intergenic | 30.0% | |
| CAATTCACTATTCAAATCGA+TGG | + | chr4_3:52058634-52058653 | Msa0646330:exon | 30.0% | |
| !! | GGAGTATTGATAATCTTCAT+CGG | - | chr4_3:52058678-52058697 | None:intergenic | 30.0% |
| AAAATGAAAAGGTTGAAGGA+AGG | - | chr4_3:52058800-52058819 | None:intergenic | 30.0% | |
| !! | TTGGAACTTTGGAATTGATT+TGG | + | chr4_3:52058945-52058964 | Msa0646330:intron | 30.0% |
| !! | TTGTTTTGTATCGTCGTTTT+TGG | + | chr4_3:52058996-52059015 | Msa0646330:intron | 30.0% |
| !!! | TGTTTTGTATCGTCGTTTTT+GGG | + | chr4_3:52058997-52059016 | Msa0646330:intron | 30.0% |
| CCGTCAATTTCATATACTTA+GGG | - | chr4_3:52059074-52059093 | None:intergenic | 30.0% | |
| CCCTAAGTATATGAAATTGA+CGG | + | chr4_3:52059071-52059090 | Msa0646330:intron | 30.0% | |
| CCTAAGTATATGAAATTGAC+GGG | + | chr4_3:52059072-52059091 | Msa0646330:intron | 30.0% | |
| CTAAGTATATGAAATTGACG+GGG | + | chr4_3:52059073-52059092 | Msa0646330:intron | 30.0% | |
| TGGTTTAGAGACTAAATTGA+TGG | + | chr4_3:52059146-52059165 | Msa0646330:intron | 30.0% | |
| ! | TTTTCGTGGTTTATAGTCTA+TGG | + | chr4_3:52059401-52059420 | Msa0646330:intron | 30.0% |
| TTATGTGAAGTTGAATCGTT+TGG | + | chr4_3:52059471-52059490 | Msa0646330:intron | 30.0% | |
| TATGTGAAGTTGAATCGTTT+GGG | + | chr4_3:52059472-52059491 | Msa0646330:intron | 30.0% | |
| AAAAATGTCAGTGCATAGAA+AGG | - | chr4_3:52059499-52059518 | None:intergenic | 30.0% | |
| TTCTGTATATGAATACACAC+AGG | - | chr4_3:52059658-52059677 | None:intergenic | 30.0% | |
| TGTGTGTATTCATATACAGA+AGG | + | chr4_3:52059657-52059676 | Msa0646330:intron | 30.0% | |
| AGTTTATGTAGAAAAAGGGA+AGG | + | chr4_3:52059777-52059796 | Msa0646330:CDS | 30.0% | |
| AGTAATGTGTGAAATTTGCA+TGG | + | chr4_3:52059870-52059889 | Msa0646330:CDS | 30.0% | |
| ! | TTAGTGGGTAACATTAAGAA+TGG | + | chr4_3:52060072-52060091 | Msa0646330:intron | 30.0% |
| ! | TTCATGAGGGTGTAAAAAAA+AGG | - | chr4_3:52060337-52060356 | None:intergenic | 30.0% |
| ! | ATTTTTCCAGTCTTTCATGA+GGG | - | chr4_3:52060350-52060369 | None:intergenic | 30.0% |
| ! | AATTTTTCCAGTCTTTCATG+AGG | - | chr4_3:52060351-52060370 | None:intergenic | 30.0% |
| TCTCTTATTGTCTTCAATGT+AGG | - | chr4_3:52060568-52060587 | None:intergenic | 30.0% | |
| GAAAAATGGTGGTTGTAATT+TGG | + | chr4_3:52060833-52060852 | Msa0646330:CDS | 30.0% | |
| ! | AATTTGGTTAGCTGTATTTG+CGG | + | chr4_3:52060849-52060868 | Msa0646330:CDS | 30.0% |
| ! | TCATGGAAAAGTATAATGAC+CGG | - | chr4_3:52060931-52060950 | None:intergenic | 30.0% |
| CAGTTTACTTTCAAGCTTAA+AGG | - | chr4_3:52061282-52061301 | None:intergenic | 30.0% | |
| TGAACTCAATGATTATAGCT+GGG | + | chr4_3:52061364-52061383 | Msa0646330:CDS | 30.0% | |
| GATTATAGCTGGGTAAATAA+TGG | + | chr4_3:52061374-52061393 | Msa0646330:CDS | 30.0% | |
| CAAACGCATATGAATATGAA+AGG | - | chr4_3:52061430-52061449 | None:intergenic | 30.0% | |
| !!! | AAAACTCTCTAAGATTTTGG+AGG | + | chr4_3:52061562-52061581 | Msa0646330:intron | 30.0% |
| AATGAAGGGTAAAATTGGAA+AGG | + | chr4_3:52061765-52061784 | Msa0646330:intron | 30.0% | |
| ATGAATAGGGTGTAAGTAAT+AGG | - | chr4_3:52061859-52061878 | None:intergenic | 30.0% | |
| AAATATGGAGGGTTTATGAA+AGG | - | chr4_3:52061925-52061944 | None:intergenic | 30.0% | |
| ! | TTCATAAACCCTCCATATTT+TGG | + | chr4_3:52061925-52061944 | Msa0646330:intron | 30.0% |
| ! | ATAAGTTGTTTCCTTGAATG+TGG | + | chr4_3:52062044-52062063 | Msa0646330:intron | 30.0% |
| ! | TAAGTTGTTTCCTTGAATGT+GGG | + | chr4_3:52062045-52062064 | Msa0646330:intron | 30.0% |
| ! | AGTGCTATTGATTGAATCTA+AGG | + | chr4_3:52062296-52062315 | Msa0646330:CDS | 30.0% |
| ATTGAATCTAAGGATCAAGA+AGG | + | chr4_3:52062306-52062325 | Msa0646330:CDS | 30.0% | |
| ! | GAGTTTCATTTTATCTCAAG+AGG | - | chr4_3:52062554-52062573 | None:intergenic | 30.0% |
| GAAACTCTTAATGTTGCATT+TGG | + | chr4_3:52062567-52062586 | Msa0646330:intron | 30.0% | |
| AATTAAGCTAGCTATCAAAG+GGG | + | chr4_3:52062771-52062790 | Msa0646330:intron | 30.0% | |
| !!! | GGATATTAGTTTTTGGGATT+GGG | - | chr4_3:52062876-52062895 | None:intergenic | 30.0% |
| !!! | AGGATATTAGTTTTTGGGAT+TGG | - | chr4_3:52062877-52062896 | None:intergenic | 30.0% |
| TCTTCAATTTGAGGACTATT+AGG | - | chr4_3:52062921-52062940 | None:intergenic | 30.0% | |
| AGTCCTCAAATTGAAGAAAA+AGG | + | chr4_3:52062924-52062943 | Msa0646330:intron | 30.0% | |
| ! | TGTCCTTTTTCTTCAATTTG+AGG | - | chr4_3:52062930-52062949 | None:intergenic | 30.0% |
| ! | TAGTTTTCTTAACAAGTGTG+GGG | - | chr4_3:52063024-52063043 | None:intergenic | 30.0% |
| !!! | GGAGCTTTAGTTTTGAATAA+TGG | - | chr4_3:52063142-52063161 | None:intergenic | 30.0% |
| AAATGGAGAGACTTAATAGA+TGG | + | chr4_3:52063675-52063694 | Msa0646330:intron | 30.0% | |
| ! | GGATTTGACAACGAAAATTT+TGG | - | chr4_3:52063914-52063933 | None:intergenic | 30.0% |
| !! | TGTTTTGAGTATTGCAAAAG+CGG | + | chr4_3:52063986-52064005 | Msa0646330:CDS | 30.0% |
| ! | ATTATTTGGATTGGATCGAG+GGG | - | chr4_3:52058587-52058606 | None:intergenic | 35.0% |
| GATCAGAAGAAGGTAGATTA+GGG | - | chr4_3:52058615-52058634 | None:intergenic | 35.0% | |
| TGATCAGAAGAAGGTAGATT+AGG | - | chr4_3:52058616-52058635 | None:intergenic | 35.0% | |
| ! | GTATTGATAATCTTCATCGG+TGG | - | chr4_3:52058675-52058694 | None:intergenic | 35.0% |
| CCCGTCAATTTCATATACTT+AGG | - | chr4_3:52059075-52059094 | None:intergenic | 35.0% | |
| CTAAATTGAAGTGAGAGTGA+TGG | + | chr4_3:52059126-52059145 | Msa0646330:intron | 35.0% | |
| ACTAAGTGAAGTCATCTACA+TGG | - | chr4_3:52059291-52059310 | None:intergenic | 35.0% | |
| ATGTAGATGACTTCACTTAG+TGG | + | chr4_3:52059290-52059309 | Msa0646330:intron | 35.0% | |
| TGTAGATGACTTCACTTAGT+GGG | + | chr4_3:52059291-52059310 | Msa0646330:intron | 35.0% | |
| GTGTATTCATATACAGAAGG+AGG | + | chr4_3:52059660-52059679 | Msa0646330:intron | 35.0% | |
| TATTTATCATCGTTGGGATG+TGG | + | chr4_3:52059741-52059760 | Msa0646330:CDS | 35.0% | |
| ! | ATTCTTGTTGCTTCATCACT+AGG | - | chr4_3:52059904-52059923 | None:intergenic | 35.0% |
| TAGTGATGAAGCAACAAGAA+TGG | + | chr4_3:52059903-52059922 | Msa0646330:CDS | 35.0% | |
| TAACGCTTGAAAACCTTGAT+TGG | - | chr4_3:52060257-52060276 | None:intergenic | 35.0% | |
| AAAAAATAGGCCATGTCATC+CGG | - | chr4_3:52060281-52060300 | None:intergenic | 35.0% | |
| TGTGTCCAACCTGTAAAAAT+AGG | - | chr4_3:52060390-52060409 | None:intergenic | 35.0% | |
| TTTCTTTGTCAAGGTAAACG+AGG | + | chr4_3:52060413-52060432 | Msa0646330:CDS | 35.0% | |
| TTCTTTGTCAAGGTAAACGA+GGG | + | chr4_3:52060414-52060433 | Msa0646330:CDS | 35.0% | |
| ! | CATGGAAAAGTATAATGACC+GGG | - | chr4_3:52060930-52060949 | None:intergenic | 35.0% |
| CAACCAACTGTACAGAAAAT+GGG | - | chr4_3:52061105-52061124 | None:intergenic | 35.0% | |
| ACAACCAACTGTACAGAAAA+TGG | - | chr4_3:52061106-52061125 | None:intergenic | 35.0% | |
| TACTTGACCAAGTATGATCA+CGG | - | chr4_3:52061145-52061164 | None:intergenic | 35.0% | |
| GGTACATGCATTATCATAAC+CGG | + | chr4_3:52061237-52061256 | Msa0646330:CDS | 35.0% | |
| CTGAACTCAATGATTATAGC+TGG | + | chr4_3:52061363-52061382 | Msa0646330:CDS | 35.0% | |
| ! | GCGTTTGCGTTTTATATGTT+TGG | + | chr4_3:52061443-52061462 | Msa0646330:CDS | 35.0% |
| AACAAATGTCAGAAGCTGAA+AGG | + | chr4_3:52061483-52061502 | Msa0646330:CDS | 35.0% | |
| ACAAATGTCAGAAGCTGAAA+GGG | + | chr4_3:52061484-52061503 | Msa0646330:CDS | 35.0% | |
| !! | GCATATTTAAAGGTGTCGAA+AGG | - | chr4_3:52061590-52061609 | None:intergenic | 35.0% |
| AAGGAAAAATCCAGCTCAAA+AGG | + | chr4_3:52061784-52061803 | Msa0646330:intron | 35.0% | |
| AGGAAAAATCCAGCTCAAAA+GGG | + | chr4_3:52061785-52061804 | Msa0646330:intron | 35.0% | |
| GTTTGGGCAAAACCAAAATA+TGG | - | chr4_3:52061940-52061959 | None:intergenic | 35.0% | |
| ACTACTGATAAGGGTAGTTT+GGG | - | chr4_3:52061956-52061975 | None:intergenic | 35.0% | |
| AACTACTGATAAGGGTAGTT+TGG | - | chr4_3:52061957-52061976 | None:intergenic | 35.0% | |
| TGTCTATACTTAATGCAGCT+GGG | - | chr4_3:52062123-52062142 | None:intergenic | 35.0% | |
| GTTATTGCATGCTTACATTG+TGG | - | chr4_3:52062246-52062265 | None:intergenic | 35.0% | |
| !!! | TGTCGTACACTATTTTTACC+TGG | + | chr4_3:52062363-52062382 | Msa0646330:intron | 35.0% |
| !!! | GTCGTACACTATTTTTACCT+GGG | + | chr4_3:52062364-52062383 | Msa0646330:intron | 35.0% |
| ! | TTACCAAGTGTGCTAAGTTT+TGG | - | chr4_3:52062406-52062425 | None:intergenic | 35.0% |
| AGCAGAACATGACAAAAGTA+GGG | - | chr4_3:52062647-52062666 | None:intergenic | 35.0% | |
| CAAGACAGAACATAACATAC+AGG | - | chr4_3:52062703-52062722 | None:intergenic | 35.0% | |
| ATTAAGCTAGCTATCAAAGG+GGG | + | chr4_3:52062772-52062791 | Msa0646330:intron | 35.0% | |
| !!! | ATTAGTTTTTGGGATTGGGT+GGG | - | chr4_3:52062872-52062891 | None:intergenic | 35.0% |
| !!! | TATTAGTTTTTGGGATTGGG+TGG | - | chr4_3:52062873-52062892 | None:intergenic | 35.0% |
| !! | TGTTTTTGTTCAGATTGTCG+AGG | + | chr4_3:52063259-52063278 | Msa0646330:intron | 35.0% |
| ! | AAAGCACGAAATTTGGAATC+AGG | - | chr4_3:52063299-52063318 | None:intergenic | 35.0% |
| AGCAACTAAAGCACGAAATT+TGG | - | chr4_3:52063306-52063325 | None:intergenic | 35.0% | |
| !!! | TCTGTATCTCATCGACTTTT+TGG | + | chr4_3:52063351-52063370 | Msa0646330:intron | 35.0% |
| !!! | CTGTATCTCATCGACTTTTT+GGG | + | chr4_3:52063352-52063371 | Msa0646330:intron | 35.0% |
| ! | AGTTTTTCTGTAAGTCAAGC+TGG | + | chr4_3:52063392-52063411 | Msa0646330:intron | 35.0% |
| TGTGTCTTTATCTCTCCAAA+TGG | + | chr4_3:52063649-52063668 | Msa0646330:intron | 35.0% | |
| ATCTCTCCAAATGGAAGAAA+TGG | + | chr4_3:52063658-52063677 | Msa0646330:intron | 35.0% | |
| ! | ACACAGCAGTTTTTGCTAAT+AGG | - | chr4_3:52063724-52063743 | None:intergenic | 35.0% |
| AATCATGTGCACCAAAACAA+AGG | - | chr4_3:52063780-52063799 | None:intergenic | 35.0% | |
| ! | TGCAACTTTTAGTGTCCAAA+GGG | - | chr4_3:52063820-52063839 | None:intergenic | 35.0% |
| ! | TTGCAACTTTTAGTGTCCAA+AGG | - | chr4_3:52063821-52063840 | None:intergenic | 35.0% |
| ! | AATCCTTTTCAAACAGATGC+TGG | + | chr4_3:52063929-52063948 | Msa0646330:intron | 35.0% |
| ATTCCGACGACAAAAGTGAA+GGG | - | chr4_3:52058536-52058555 | None:intergenic | 40.0% | |
| AATTCCGACGACAAAAGTGA+AGG | - | chr4_3:52058537-52058556 | None:intergenic | 40.0% | |
| ! | TTATTTGGATTGGATCGAGG+GGG | - | chr4_3:52058586-52058605 | None:intergenic | 40.0% |
| TTCTTCTTCGACGTCTTGAT+CGG | - | chr4_3:52058699-52058718 | None:intergenic | 40.0% | |
| ! | GTTTTCGTAGAATTCACCGA+CGG | - | chr4_3:52058726-52058745 | None:intergenic | 40.0% |
| TGACTTCACTTAGTGGGATA+AGG | + | chr4_3:52059297-52059316 | Msa0646330:intron | 40.0% | |
| !!! | TCATGGTTGCAACTTTTTCG+TGG | + | chr4_3:52059387-52059406 | Msa0646330:intron | 40.0% |
| TATGGTGATCCAACTTCTAG+TGG | + | chr4_3:52059419-52059438 | Msa0646330:intron | 40.0% | |
| !!! | TGAACTGTTTTGACACTTGC+AGG | + | chr4_3:52059524-52059543 | Msa0646330:intron | 40.0% |
| !! | GAAGGCATTTATGTTTGCTC+AGG | + | chr4_3:52059795-52059814 | Msa0646330:CDS | 40.0% |
| GTGGATGAATATCATGACTC+TGG | + | chr4_3:52059829-52059848 | Msa0646330:CDS | 40.0% | |
| ATGGCGTATTGTCATGTTAG+TGG | + | chr4_3:52060056-52060075 | Msa0646330:intron | 40.0% | |
| TGGCGTATTGTCATGTTAGT+GGG | + | chr4_3:52060057-52060076 | Msa0646330:intron | 40.0% | |
| AATGGACCGCACATAAATAG+TGG | + | chr4_3:52060150-52060169 | Msa0646330:intron | 40.0% | |
| TTTACACCCTCATGAAAGAC+TGG | + | chr4_3:52060341-52060360 | Msa0646330:intron | 40.0% | |
| GTCCAACCTGTAAAAATAGG+CGG | - | chr4_3:52060387-52060406 | None:intergenic | 40.0% | |
| GACACAGCATTTCTTTGTCA+AGG | + | chr4_3:52060404-52060423 | Msa0646330:CDS | 40.0% | |
| AAGTAAACGCATCAGATGCA+TGG | + | chr4_3:52060440-52060459 | Msa0646330:CDS | 40.0% | |
| GCTGTCGTAAGAACTTTACT+TGG | + | chr4_3:52060492-52060511 | Msa0646330:CDS | 40.0% | |
| CATACTTCTCTGCCATATCA+GGG | - | chr4_3:52060527-52060546 | None:intergenic | 40.0% | |
| TCATACTTCTCTGCCATATC+AGG | - | chr4_3:52060528-52060547 | None:intergenic | 40.0% | |
| TGTGAGGTAGAATGTTCATG+TGG | + | chr4_3:52060654-52060673 | Msa0646330:CDS | 40.0% | |
| GGAATACTCACCAAAATGCT+TGG | - | chr4_3:52060875-52060894 | None:intergenic | 40.0% | |
| ! | ATTCTCATCCAACTTGTTCC+CGG | + | chr4_3:52060909-52060928 | Msa0646330:intron | 40.0% |
| TATAATGACCGGGAACAAGT+TGG | - | chr4_3:52060920-52060939 | None:intergenic | 40.0% | |
| TTTGATCCATGTTGCCGTAA+AGG | + | chr4_3:52061003-52061022 | Msa0646330:intron | 40.0% | |
| CAACAACAACCAAGCCTTTA+CGG | - | chr4_3:52061020-52061039 | None:intergenic | 40.0% | |
| ! | TTGCCCATTTTCTGTACAGT+TGG | + | chr4_3:52061099-52061118 | Msa0646330:intron | 40.0% |
| TTTCTGTACAGTTGGTTGTG+TGG | + | chr4_3:52061107-52061126 | Msa0646330:intron | 40.0% | |
| CATACTTGGTCAAGTATAGC+TGG | + | chr4_3:52061149-52061168 | Msa0646330:CDS | 40.0% | |
| ATCAAGAGAAATCAGCTGAG+CGG | + | chr4_3:52061195-52061214 | Msa0646330:CDS | 40.0% | |
| ! | AGTCTGTGTGAGCTTTATAC+CGG | - | chr4_3:52061259-52061278 | None:intergenic | 40.0% |
| GGCTAAATTTACTAGCGAGT+AGG | + | chr4_3:52061731-52061750 | Msa0646330:intron | 40.0% | |
| ATGGAGGGTTTATGAAAGGA+AGG | - | chr4_3:52061921-52061940 | None:intergenic | 40.0% | |
| GGGCAAAACCAAAATATGGA+GGG | - | chr4_3:52061936-52061955 | None:intergenic | 40.0% | |
| TGGGCAAAACCAAAATATGG+AGG | - | chr4_3:52061937-52061956 | None:intergenic | 40.0% | |
| GAGAAGGCAACTACTGATAA+GGG | - | chr4_3:52061965-52061984 | None:intergenic | 40.0% | |
| TGAGAAGGCAACTACTGATA+AGG | - | chr4_3:52061966-52061985 | None:intergenic | 40.0% | |
| CAACTTATTTAGGCCCAGTT+TGG | - | chr4_3:52062032-52062051 | None:intergenic | 40.0% | |
| CTGTCTATACTTAATGCAGC+TGG | - | chr4_3:52062124-52062143 | None:intergenic | 40.0% | |
| AAGTATAGACAGTAAAGCGG+TGG | + | chr4_3:52062132-52062151 | Msa0646330:intron | 40.0% | |
| TCTGAAAGCAAATCACTGCA+AGG | - | chr4_3:52062206-52062225 | None:intergenic | 40.0% | |
| GAGGATCACATCAAAAGTCA+AGG | - | chr4_3:52062268-52062287 | None:intergenic | 40.0% | |
| TCACCAAAACTTAGCACACT+TGG | + | chr4_3:52062400-52062419 | Msa0646330:intron | 40.0% | |
| ATACAGCCTACTGCAATTGA+TGG | - | chr4_3:52062436-52062455 | None:intergenic | 40.0% | |
| !! | TATCTCAAGAGGAGTACTCT+TGG | - | chr4_3:52062543-52062562 | None:intergenic | 40.0% |
| TGGCACATAGACAAAACTGA+AGG | + | chr4_3:52062587-52062606 | Msa0646330:intron | 40.0% | |
| CAGCAGAACATGACAAAAGT+AGG | - | chr4_3:52062648-52062667 | None:intergenic | 40.0% | |
| ! | ATAGGGTTTTCCAAGTGCTT+CGG | - | chr4_3:52062751-52062770 | None:intergenic | 40.0% |
| AGAATTGTTGTGTTGGGAAG+TGG | + | chr4_3:52063048-52063067 | Msa0646330:intron | 40.0% | |
| TTTCGTGCTTTAGTTGCTGT+TGG | + | chr4_3:52063308-52063327 | Msa0646330:CDS | 40.0% | |
| ! | TTTAGTTGCTGTTGGATCAC+TGG | + | chr4_3:52063316-52063335 | Msa0646330:CDS | 40.0% |
| ACTCGTTAGCAACAGTAGAA+CGG | - | chr4_3:52063505-52063524 | None:intergenic | 40.0% | |
| GTCTCTCCATTTCTTCCATT+TGG | - | chr4_3:52063667-52063686 | None:intergenic | 40.0% | |
| GAGAGACTTAATAGATGGAG+AGG | + | chr4_3:52063680-52063699 | Msa0646330:intron | 40.0% | |
| GAGTTTCATATCCTAGTCAG+TGG | + | chr4_3:52063750-52063769 | Msa0646330:intron | 40.0% | |
| !! | TCAGTGGAACACCTTTGTTT+TGG | + | chr4_3:52063766-52063785 | Msa0646330:intron | 40.0% |
| ! | CTTTTCAAACAGATGCTGGA+GGG | + | chr4_3:52063933-52063952 | Msa0646330:intron | 40.0% |
| AGTATTGCAAAAGCGGCAAA+GGG | + | chr4_3:52063993-52064012 | Msa0646330:CDS | 40.0% | |
| AGATCCTACTTCAGCAATCT+TGG | - | chr4_3:52064030-52064049 | None:intergenic | 40.0% | |
| TGTGTTGTGTGTGTGTGGTA+AGG | + | chr4_3:52058500-52058519 | Msa0646330:five_prime_UTR | 45.0% | |
| !! | CTTCCCTTCACTTTTGTCGT+CGG | + | chr4_3:52058530-52058549 | Msa0646330:five_prime_UTR | 45.0% |
| GTCGAAGAAGAAGATTCCGT+CGG | + | chr4_3:52058707-52058726 | Msa0646330:CDS | 45.0% | |
| TCACTTAGTGGGATAAGGCT+TGG | + | chr4_3:52059302-52059321 | Msa0646330:intron | 45.0% | |
| ACACTTGCAGGTGATTACGA+AGG | + | chr4_3:52059536-52059555 | Msa0646330:intron | 45.0% | |
| GGAATCACTGATAGTTGCAC+AGG | + | chr4_3:52059557-52059576 | Msa0646330:CDS | 45.0% | |
| GCATTTATGTTTGCTCAGGC+TGG | + | chr4_3:52059799-52059818 | Msa0646330:CDS | 45.0% | |
| !! | GAAGCAACAAGAATGGACTG+TGG | + | chr4_3:52059910-52059929 | Msa0646330:CDS | 45.0% |
| GTGCGTGTCCACAAAATCAA+TGG | + | chr4_3:52060132-52060151 | Msa0646330:intron | 45.0% | |
| !!! | TGTGCGGTCCATTGATTTTG+TGG | - | chr4_3:52060143-52060162 | None:intergenic | 45.0% |
| GACCGCACATAAATAGTGGT+GGG | + | chr4_3:52060154-52060173 | Msa0646330:intron | 45.0% | |
| GACCCACCACTATTTATGTG+CGG | - | chr4_3:52060159-52060178 | None:intergenic | 45.0% | |
| !! | CAAGGTTTTCAAGCGTTAGC+CGG | + | chr4_3:52060259-52060278 | Msa0646330:intron | 45.0% |
| !!! | CTTTGGCCGCCTATTTTTAC+AGG | + | chr4_3:52060378-52060397 | Msa0646330:intron | 45.0% |
| !! | TGGTAGAAAGCACCCTGATA+TGG | + | chr4_3:52060512-52060531 | Msa0646330:CDS | 45.0% |
| CGAATTGCATTCCCACAATG+TGG | - | chr4_3:52060612-52060631 | None:intergenic | 45.0% | |
| TGTGGGAATGCAATTCGTGT+TGG | + | chr4_3:52060615-52060634 | Msa0646330:CDS | 45.0% | |
| GTGGGAATGCAATTCGTGTT+GGG | + | chr4_3:52060616-52060635 | Msa0646330:CDS | 45.0% | |
| TGGGAATGCAATTCGTGTTG+GGG | + | chr4_3:52060617-52060636 | Msa0646330:CDS | 45.0% | |
| TCCCACATCAAACACGAACA+GGG | - | chr4_3:52060720-52060739 | None:intergenic | 45.0% | |
| !!! | CATTTTTCTCCACCGGTTTG+TGG | - | chr4_3:52060821-52060840 | None:intergenic | 45.0% |
| CACAAACCGGTGGAGAAAAA+TGG | + | chr4_3:52060819-52060838 | Msa0646330:CDS | 45.0% | |
| AAACCGGTGGAGAAAAATGG+TGG | + | chr4_3:52060822-52060841 | Msa0646330:CDS | 45.0% | |
| !! | CAACCACCATTTTTCTCCAC+CGG | - | chr4_3:52060828-52060847 | None:intergenic | 45.0% |
| ! | GTATTTGCGGCCAAGCATTT+TGG | + | chr4_3:52060862-52060881 | Msa0646330:CDS | 45.0% |
| TCAAGAGAAATCAGCTGAGC+GGG | + | chr4_3:52061196-52061215 | Msa0646330:CDS | 45.0% | |
| GAAGGCTAAGTTTACTCGTG+AGG | - | chr4_3:52061903-52061922 | None:intergenic | 45.0% | |
| ! | CTTGTCTAGGGTAGATGAGA+AGG | - | chr4_3:52061981-52062000 | None:intergenic | 45.0% |
| ACCGAGAAGCTATTCCAAAC+TGG | + | chr4_3:52062015-52062034 | Msa0646330:intron | 45.0% | |
| ! | CCCAGTTTGGAATAGCTTCT+CGG | - | chr4_3:52062019-52062038 | None:intergenic | 45.0% |
| CCGAGAAGCTATTCCAAACT+GGG | + | chr4_3:52062016-52062035 | Msa0646330:intron | 45.0% | |
| TCCTTGAATGTGGGTGCATT+TGG | + | chr4_3:52062054-52062073 | Msa0646330:intron | 45.0% | |
| TCCAAATGCACCCACATTCA+AGG | - | chr4_3:52062058-52062077 | None:intergenic | 45.0% | |
| CTATACTTAATGCAGCTGGG+TGG | - | chr4_3:52062120-52062139 | None:intergenic | 45.0% | |
| TATAGACAGTAAAGCGGTGG+TGG | + | chr4_3:52062135-52062154 | Msa0646330:intron | 45.0% | |
| TCAATAGCACTGCGTAACTG+AGG | - | chr4_3:52062287-52062306 | None:intergenic | 45.0% | |
| TGTTCTATCAGCAGCACTTG+AGG | + | chr4_3:52062338-52062357 | Msa0646330:CDS | 45.0% | |
| GTGATGAGTTGTTTGAACCC+AGG | - | chr4_3:52062384-52062403 | None:intergenic | 45.0% | |
| CCTACTGCAATTGATGGAGT+CGG | - | chr4_3:52062430-52062449 | None:intergenic | 45.0% | |
| TAAAGCTCCTCAAGATGCAG+AGG | + | chr4_3:52063153-52063172 | Msa0646330:intron | 45.0% | |
| GATTGTCGAGGATGAAAACG+TGG | + | chr4_3:52063271-52063290 | Msa0646330:intron | 45.0% | |
| !! | TAGTGGGTTCCATCACTAAG+TGG | + | chr4_3:52063596-52063615 | Msa0646330:intron | 45.0% |
| ! | AGTGGGTTCCATCACTAAGT+GGG | + | chr4_3:52063597-52063616 | Msa0646330:intron | 45.0% |
| !! | ACAAAGGTGTTCCACTGACT+AGG | - | chr4_3:52063764-52063783 | None:intergenic | 45.0% |
| ! | TGGTGCACATGATTTGCGTA+AGG | + | chr4_3:52063786-52063805 | Msa0646330:intron | 45.0% |
| CGTAAGGAATGACATCCCTT+TGG | + | chr4_3:52063802-52063821 | Msa0646330:intron | 45.0% | |
| CCTCCAGCATCTGTTTGAAA+AGG | - | chr4_3:52063935-52063954 | None:intergenic | 45.0% | |
| ! | CCTTTTCAAACAGATGCTGG+AGG | + | chr4_3:52063932-52063951 | Msa0646330:intron | 45.0% |
| ! | GAGTATTGCAAAAGCGGCAA+AGG | + | chr4_3:52063992-52064011 | Msa0646330:CDS | 45.0% |
| AAAAGCGGCAAAGGGTTCTA+AGG | + | chr4_3:52064001-52064020 | Msa0646330:CDS | 45.0% | |
| GACTCCAAGATTGCTGAAGT+AGG | + | chr4_3:52064023-52064042 | Msa0646330:CDS | 45.0% | |
| !!! | TATTTATTTATTTTTTTGAT+CGG | + | chr4_3:52060301-52060320 | Msa0646330:intron | 5.0% |
| !!! | TATAGATTAATTTAATTTTA+TGG | + | chr4_3:52060975-52060994 | Msa0646330:intron | 5.0% |
| !!! | AAAATTATTTATTGAAATTT+TGG | - | chr4_3:52062465-52062484 | None:intergenic | 5.0% |
| !!! | ATTATTTAAAATATTGAATT+TGG | + | chr4_3:52063192-52063211 | Msa0646330:intron | 5.0% |
| !!! | TTATTTAAAATATTGAATTT+GGG | + | chr4_3:52063193-52063212 | Msa0646330:intron | 5.0% |
| TGTGCTGTGTTGTGTGTGTG+TGG | + | chr4_3:52058495-52058514 | Msa0646330:five_prime_UTR | 50.0% | |
| CGACGACAAAAGTGAAGGGA+AGG | - | chr4_3:52058532-52058551 | None:intergenic | 50.0% | |
| ! | ATATCATGACTCTGGCTCGC+TGG | + | chr4_3:52059837-52059856 | Msa0646330:CDS | 50.0% |
| GGACCGCACATAAATAGTGG+TGG | + | chr4_3:52060153-52060172 | Msa0646330:intron | 50.0% | |
| !!! | GGCCGCCTATTTTTACAGGT+TGG | + | chr4_3:52060382-52060401 | Msa0646330:intron | 50.0% |
| GGGAATGCAATTCGTGTTGG+GGG | + | chr4_3:52060618-52060637 | Msa0646330:CDS | 50.0% | |
| ! | GGGTGATGATGACTTGTGTG+AGG | + | chr4_3:52060638-52060657 | Msa0646330:CDS | 50.0% |
| CCACATCAAACACGAACAGG+GGG | - | chr4_3:52060718-52060737 | None:intergenic | 50.0% | |
| CCCACATCAAACACGAACAG+GGG | - | chr4_3:52060719-52060738 | None:intergenic | 50.0% | |
| CCCCTGTTCGTGTTTGATGT+GGG | + | chr4_3:52060716-52060735 | Msa0646330:CDS | 50.0% | |
| CTCCCACATCAAACACGAAC+AGG | - | chr4_3:52060721-52060740 | None:intergenic | 50.0% | |
| GTGTTTGATGTGGGAGCTCT+GGG | + | chr4_3:52060725-52060744 | Msa0646330:CDS | 50.0% | |
| ! | CTGTCCAAAGTGCCACAAAC+CGG | + | chr4_3:52060806-52060825 | Msa0646330:CDS | 50.0% |
| TCCATGTTGCCGTAAAGGCT+TGG | + | chr4_3:52061008-52061027 | Msa0646330:intron | 50.0% | |
| ACCAAGCCTTTACGGCAACA+TGG | - | chr4_3:52061012-52061031 | None:intergenic | 50.0% | |
| CTGTACAGTTGGTTGTGTGG+TGG | + | chr4_3:52061110-52061129 | Msa0646330:intron | 50.0% | |
| CTACTGGCCGTGATCATACT+TGG | + | chr4_3:52061135-52061154 | Msa0646330:CDS | 50.0% | |
| AGTATAGCTGGTCACAGCTG+TGG | + | chr4_3:52061161-52061180 | Msa0646330:CDS | 50.0% | |
| GGGCAAAGAGGGATCTCTAT+AGG | + | chr4_3:52061216-52061235 | Msa0646330:CDS | 50.0% | |
| GGATCAACAGCAGCAGTTAG+AGG | + | chr4_3:52061529-52061548 | Msa0646330:CDS | 50.0% | |
| CCGACTCCATCAATTGCAGT+AGG | + | chr4_3:52062427-52062446 | Msa0646330:intron | 50.0% | |
| ! | GGGTGCTATGATAGAGGTCT+GGG | - | chr4_3:52062852-52062871 | None:intergenic | 50.0% |
| ! | TGGGTGCTATGATAGAGGTC+TGG | - | chr4_3:52062853-52062872 | None:intergenic | 50.0% |
| ! | TTGGGTGGGTGCTATGATAG+AGG | - | chr4_3:52062858-52062877 | None:intergenic | 50.0% |
| CTATGCACCTCTGCATCTTG+AGG | - | chr4_3:52063163-52063182 | None:intergenic | 50.0% | |
| ! | GAGGGGGTGTGATCGGTAAA+AGG | - | chr4_3:52058570-52058589 | None:intergenic | 55.0% |
| ! | TTGGATCGAGGGGGTGTGAT+CGG | - | chr4_3:52058577-52058596 | None:intergenic | 55.0% |
| GCAGCGGGAGCAATAGAAGA+GGG | - | chr4_3:52058770-52058789 | None:intergenic | 55.0% | |
| AGCAGCGGGAGCAATAGAAG+AGG | - | chr4_3:52058771-52058790 | None:intergenic | 55.0% | |
| TTCTATTGCTCCCGCTGCTC+AGG | + | chr4_3:52058772-52058791 | Msa0646330:CDS | 55.0% | |
| AAGGAAGGAACCTGAGCAGC+GGG | - | chr4_3:52058785-52058804 | None:intergenic | 55.0% | |
| GAAGGAAGGAACCTGAGCAG+CGG | - | chr4_3:52058786-52058805 | None:intergenic | 55.0% | |
| ! | TGCTCAGGCTGGTGTTAGTG+TGG | + | chr4_3:52059810-52059829 | Msa0646330:CDS | 55.0% |
| CAAGCGTTAGCCGGATGACA+TGG | + | chr4_3:52060268-52060287 | Msa0646330:intron | 55.0% | |
| TTCCCACAATGTGGCGTGCT+CGG | - | chr4_3:52060603-52060622 | None:intergenic | 55.0% | |
| CCCCCTGTTCGTGTTTGATG+TGG | + | chr4_3:52060715-52060734 | Msa0646330:CDS | 55.0% | |
| CGTGTTTGATGTGGGAGCTC+TGG | + | chr4_3:52060724-52060743 | Msa0646330:CDS | 55.0% | |
| CGGTTTGTGGCACTTTGGAC+AGG | - | chr4_3:52060808-52060827 | None:intergenic | 55.0% | |
| ! | TCCAAAGTGCCACAAACCGG+TGG | + | chr4_3:52060809-52060828 | Msa0646330:CDS | 55.0% |
| !! | TCCACCGGTTTGTGGCACTT+TGG | - | chr4_3:52060813-52060832 | None:intergenic | 55.0% |
| ! | TGGTTGTGTGGTGGAGCTAC+TGG | + | chr4_3:52061119-52061138 | Msa0646330:CDS | 55.0% |
| AATCAGCTGAGCGGGCAAAG+AGG | + | chr4_3:52061204-52061223 | Msa0646330:CDS | 55.0% | |
| ATCAGCTGAGCGGGCAAAGA+GGG | + | chr4_3:52061205-52061224 | Msa0646330:CDS | 55.0% | |
| ! | GGGGTTACACCCTTTTGAGC+TGG | - | chr4_3:52061797-52061816 | None:intergenic | 55.0% |
| CTGGGTGGTGAGGTTAGGTA+GGG | - | chr4_3:52062105-52062124 | None:intergenic | 55.0% | |
| CTTAATGCAGCTGGGTGGTG+AGG | - | chr4_3:52062115-52062134 | None:intergenic | 55.0% | |
| ! | AGACAGTAAAGCGGTGGTGG+TGG | + | chr4_3:52062138-52062157 | Msa0646330:intron | 55.0% |
| !! | CTCATGAGCACCGAAGCACT+TGG | + | chr4_3:52062738-52062757 | Msa0646330:intron | 55.0% |
| TGGTGGGACCCACTTAGTGA+TGG | - | chr4_3:52063608-52063627 | None:intergenic | 55.0% | |
| GGAGGACTTGCGCAGAGTGA+TGG | + | chr4_3:52059678-52059697 | Msa0646330:CDS | 60.0% | |
| TGTCCGAGCACGCCACATTG+TGG | + | chr4_3:52060597-52060616 | Msa0646330:CDS | 60.0% | |
| GTCCGAGCACGCCACATTGT+GGG | + | chr4_3:52060598-52060617 | Msa0646330:CDS | 60.0% | |
| GGTGGTGAGGTTAGGTAGGG+TGG | - | chr4_3:52062102-52062121 | None:intergenic | 60.0% | |
| GCTGGGTGGTGAGGTTAGGT+AGG | - | chr4_3:52062106-52062125 | None:intergenic | 60.0% | |
| TGCAGCTGGGTGGTGAGGTT+AGG | - | chr4_3:52062110-52062129 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52058486 | 52064079 | 52058486 | ID=Msa0646330;Name=Msa0646330 |
| chr4_3 | mRNA | 52058486 | 52064079 | 52058486 | ID=Msa0646330-mRNA-1;Parent=Msa0646330;Name=Msa0646330-mRNA-1;_AED=0.14;_eAED=0.14;_QI=167|0.57|0.5|0.62|1|1|8|0|569 |
| chr4_3 | exon | 52058486 | 52058793 | 52058486 | ID=Msa0646330-mRNA-1:exon:12686;Parent=Msa0646330-mRNA-1 |
| chr4_3 | exon | 52059546 | 52059578 | 52059546 | ID=Msa0646330-mRNA-1:exon:12687;Parent=Msa0646330-mRNA-1 |
| chr4_3 | exon | 52059676 | 52059952 | 52059676 | ID=Msa0646330-mRNA-1:exon:12688;Parent=Msa0646330-mRNA-1 |
| chr4_3 | exon | 52060400 | 52060883 | 52060400 | ID=Msa0646330-mRNA-1:exon:12689;Parent=Msa0646330-mRNA-1 |
| chr4_3 | exon | 52061118 | 52061556 | 52061118 | ID=Msa0646330-mRNA-1:exon:12690;Parent=Msa0646330-mRNA-1 |
| chr4_3 | exon | 52062225 | 52062359 | 52062225 | ID=Msa0646330-mRNA-1:exon:12691;Parent=Msa0646330-mRNA-1 |
| chr4_3 | exon | 52063272 | 52063337 | 52063272 | ID=Msa0646330-mRNA-1:exon:12692;Parent=Msa0646330-mRNA-1 |
| chr4_3 | exon | 52063945 | 52064079 | 52063945 | ID=Msa0646330-mRNA-1:exon:12693;Parent=Msa0646330-mRNA-1 |
| chr4_3 | five_prime_UTR | 52058486 | 52058652 | 52058486 | ID=Msa0646330-mRNA-1:five_prime_utr;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52058653 | 52058793 | 52058653 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52059546 | 52059578 | 52059546 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52059676 | 52059952 | 52059676 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52060400 | 52060883 | 52060400 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52061118 | 52061556 | 52061118 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52062225 | 52062359 | 52062225 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52063272 | 52063337 | 52063272 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| chr4_3 | CDS | 52063945 | 52064079 | 52063945 | ID=Msa0646330-mRNA-1:cds;Parent=Msa0646330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
