AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1431170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431170 MtrunA17_Chr1g0150541 95.433 832 36 2 1 831 1 831 0.0 1645
Msa1431170 MtrunA17_Chr2g0313171 52.011 373 176 2 121 491 403 774 8.21e-125 398
Msa1431170 MtrunA17_Chr5g0412381 53.371 356 160 3 162 515 405 756 2.09e-124 397
Msa1431170 MtrunA17_Chr5g0427301 51.852 378 177 3 136 510 497 872 1.34e-123 397
Msa1431170 MtrunA17_Chr3g0133061 52.925 359 168 1 136 494 539 896 2.45e-123 398
Msa1431170 MtrunA17_Chr4g0074041 40.705 312 171 7 181 486 92 395 1.14e-64 232
Msa1431170 MtrunA17_Chr2g0312901 36.524 397 236 10 179 566 20 409 2.96e-61 219
Msa1431170 MtrunA17_Chr6g0458441 37.855 317 176 11 177 486 123 425 5.12e-55 201
Msa1431170 MtrunA17_Chr6g0458421 36.741 313 185 8 177 486 25 327 1.61e-53 195
Msa1431170 MtrunA17_Chr6g0458431 36.593 317 180 10 177 486 90 392 1.38e-51 191
Msa1431170 MtrunA17_Chr5g0411271 31.707 369 215 9 139 486 97 449 1.01e-49 187
Msa1431170 MtrunA17_Chr8g0366721 31.935 310 182 9 182 486 213 498 1.21e-41 160
Msa1431170 MtrunA17_Chr8g0365831 32.288 319 183 12 182 486 165 464 9.34e-36 142
Msa1431170 MtrunA17_Chr3g0123951 30.408 319 184 8 182 470 24 334 9.83e-33 130
Msa1431170 MtrunA17_Chr8g0382161 29.467 319 187 9 182 470 24 334 1.35e-31 127
Msa1431170 MtrunA17_Chr1g0149991 28.161 348 198 11 182 484 182 522 2.37e-30 127
Msa1431170 MtrunA17_Chr4g0062561 30.449 312 185 9 182 486 254 540 4.16e-28 121
Msa1431170 MtrunA17_Chr4g0062561 29.043 303 185 10 199 492 577 858 1.97e-21 100
Msa1431170 MtrunA17_Chr1g0148321 27.647 340 209 11 142 467 67 383 3.28e-24 109
Msa1431170 MtrunA17_Chr2g0322211 37.255 153 90 3 339 488 714 863 3.62e-22 102
Msa1431170 MtrunA17_Chr4g0062491 26.471 306 191 11 221 512 35 320 2.82e-20 92.8
Msa1431170 MtrunA17_Chr3g0138791 27.090 299 186 10 180 467 106 383 4.39e-20 96.3
Msa1431170 MtrunA17_Chr4g0064671 26.016 246 126 7 291 484 2 243 1.60e-19 89.4
Msa1431170 MtrunA17_Chr1g0189101 35.714 168 96 5 339 502 762 921 2.08e-18 90.5
Msa1431170 MtrunA17_Chr7g0267641 27.935 247 152 9 262 494 710 944 1.90e-17 87.4
Msa1431170 MtrunA17_Chr7g0255591 29.245 212 141 6 282 487 693 901 6.27e-16 82.4
Msa1431170 MtrunA17_Chr3g0121291 37.121 132 62 4 373 486 941 1069 2.06e-14 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431170 AT2G24640.1 63.619 514 167 6 6 513 5 504 0.0 676
Msa1431170 AT4G31670.1 63.860 487 164 3 6 492 5 479 0.0 652
Msa1431170 AT2G24640.2 74.251 334 84 1 180 513 3 334 0.0 544
Msa1431170 AT1G17110.3 50.521 384 185 1 160 543 417 795 4.42e-128 406
Msa1431170 AT1G17110.1 50.521 384 185 1 160 543 417 795 4.42e-128 406
Msa1431170 AT1G17110.2 50.521 384 185 1 160 543 421 799 4.51e-128 407
Msa1431170 AT4G24560.1 50.575 348 170 2 161 508 523 868 4.61e-115 374
Msa1431170 AT5G65450.1 52.870 331 151 3 162 491 311 637 1.13e-108 350
Msa1431170 AT5G65450.2 52.870 331 151 3 162 491 330 656 3.47e-108 349
Msa1431170 AT5G57990.1 38.636 308 182 5 181 486 107 409 9.32e-63 227
Msa1431170 AT3G14400.1 37.791 344 191 8 170 499 13 347 1.52e-60 218
Msa1431170 AT5G46740.1 34.251 327 197 9 171 486 149 468 2.08e-44 172
Msa1431170 AT4G17895.1 32.911 316 192 10 182 490 177 479 2.23e-38 153
Msa1431170 AT5G46740.2 36.681 229 134 6 262 486 38 259 7.35e-34 137
Msa1431170 AT2G22310.1 29.430 316 190 8 182 470 24 333 4.09e-33 132
Msa1431170 AT4G39910.1 28.660 321 191 8 182 470 24 338 1.29e-31 127
Msa1431170 AT2G22310.3 28.383 303 184 8 195 470 5 301 1.93e-28 117
Msa1431170 AT2G22310.2 28.094 299 182 8 199 470 4 296 5.16e-27 113
Msa1431170 AT5G10790.2 27.596 366 197 12 182 489 49 404 1.14e-23 105
Msa1431170 AT5G10790.1 27.596 366 197 12 182 489 178 533 5.54e-23 104
Msa1431170 AT3G49600.2 26.000 300 187 10 180 467 105 381 3.47e-20 97.1
Msa1431170 AT3G49600.1 26.000 300 187 10 180 467 105 381 3.47e-20 97.1
Msa1431170 AT3G49600.3 26.000 300 187 10 180 467 105 381 3.67e-20 96.7
Msa1431170 AT5G22030.1 37.013 154 90 4 339 488 720 870 4.68e-20 96.3
Msa1431170 AT5G22030.2 37.013 154 90 4 339 488 762 912 5.16e-20 96.3
Msa1431170 AT4G10590.4 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa1431170 AT4G10590.3 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa1431170 AT4G10590.1 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa1431170 AT4G10590.2 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa1431170 AT4G10570.1 35.088 171 101 5 339 505 746 910 7.63e-18 89.4
Msa1431170 AT1G32850.1 34.194 155 95 4 339 489 731 882 1.79e-16 84.7
Msa1431170 AT1G04860.1 36.719 128 64 4 373 486 832 956 3.14e-15 80.9
Msa1431170 AT2G40930.1 32.704 159 99 5 333 486 760 915 4.78e-14 77.0
Msa1431170 AT2G40930.2 32.704 159 99 5 333 486 760 915 4.78e-14 77.0
Msa1431170 AT3G11910.3 24.611 321 192 14 177 477 196 486 1.04e-13 75.9
Msa1431170 AT3G11910.1 24.611 321 192 14 177 477 196 486 1.04e-13 75.9
Msa1431170 AT3G11910.4 24.611 321 192 14 177 477 195 485 1.08e-13 75.9
Msa1431170 AT3G11910.2 24.611 321 192 14 177 477 195 485 1.08e-13 75.9
Msa1431170 AT5G06600.3 25.077 323 188 15 177 477 197 487 1.12e-13 75.9
Msa1431170 AT5G06600.2 25.077 323 188 15 177 477 196 486 1.31e-13 75.5
Msa1431170 AT5G06600.1 25.077 323 188 15 177 477 197 487 1.32e-13 75.5
Msa1431170 AT2G32780.1 37.121 132 62 5 373 486 954 1082 2.27e-13 74.7

Find 214 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAAATTGTGTTCTAAATT+TGG 0.084163 tig0026810:-22644 None:intergenic
AAGGCAATTGTAAGAATATT+TGG 0.129076 tig0026810:-19137 None:intergenic
GGCAACTAATGGTGTGTTTA+AGG 0.166498 tig0026810:+16935 Msa1431170:CDS
CCTAATATCGGTGGTACTTT+AGG 0.209819 tig0026810:+18078 Msa1431170:CDS
CTACGTTGAATTGTGATTCT+AGG 0.218939 tig0026810:-15939 None:intergenic
AATTTGTTAAACTATTTAAC+TGG 0.221244 tig0026810:+17630 Msa1431170:CDS
GTGTTTAAGGCTTCTGCTGC+TGG 0.231659 tig0026810:+16948 Msa1431170:CDS
TAAAAGAAAATTACATCTTT+AGG 0.232918 tig0026810:-17038 None:intergenic
TCTGCTACATCAAGGATTTC+AGG 0.234092 tig0026810:+19605 Msa1431170:CDS
AATCTGCTATTCCGTGAATT+TGG 0.239552 tig0026810:-22472 None:intergenic
TGTGATTGTGATTGTGATTT+GGG 0.246282 tig0026810:+15869 Msa1431170:five_prime_UTR
AGATTTGATTGATGTGGATA+TGG 0.257969 tig0026810:+20848 Msa1431170:CDS
ACCGCTCTTGTAATCGCTAT+TGG 0.263025 tig0026810:+16019 Msa1431170:CDS
TTTCTTCTGTTCTATAAATC+AGG 0.263651 tig0026810:-15793 None:intergenic
CATATATGCTGTTGTATAAA+AGG 0.272790 tig0026810:+19806 Msa1431170:CDS
CAACAGTCGCATTGGAATTC+CGG 0.278181 tig0026810:+16852 Msa1431170:CDS
TCTGTTTGCCTTGATGAATT+TGG 0.280351 tig0026810:+18288 Msa1431170:CDS
CCAGAAGAAACCTTTGATTC+TGG 0.284036 tig0026810:-20366 None:intergenic
TAGCTTAACCAGTGCAGATT+TGG 0.296940 tig0026810:+22530 Msa1431170:three_prime_UTR
TTGTGATTGTGATTGTGATT+TGG 0.298722 tig0026810:+15868 Msa1431170:five_prime_UTR
TCGAAATGTGGAGGAAGATT+TGG 0.318936 tig0026810:+21004 Msa1431170:CDS
AATTGCCTTGAAAAGATTCC+AGG 0.322192 tig0026810:+19151 Msa1431170:CDS
CCTAAAGTACCACCGATATT+AGG 0.326433 tig0026810:-18078 None:intergenic
ATCGGTGGTACTTTAGGTTA+TGG 0.331235 tig0026810:+18084 Msa1431170:CDS
GCTAACGACGATGCATATTA+TGG 0.332647 tig0026810:+21062 Msa1431170:CDS
GCTAACGACGATGCATATTA+TGG 0.332647 tig0026810:+22588 Msa1431170:three_prime_UTR
CAAGAATTGAAGGTTTCTTC+TGG 0.335200 tig0026810:+20519 Msa1431170:CDS
ATTCAAACTACCGAATCTTC+AGG 0.340313 tig0026810:+20222 Msa1431170:CDS
ATCTTCAACAACATGAGAAA+TGG 0.349453 tig0026810:-20829 None:intergenic
CCGGATGAAACCTTCAATTC+TGG 0.349556 tig0026810:-20669 None:intergenic
CCTTTCAAATGTGAAGGCCT+TGG 0.352877 tig0026810:+20302 Msa1431170:CDS
TTTCAGGCATTTGTAATGAT+TGG 0.354105 tig0026810:+17968 Msa1431170:intron
TTAAGAAATTACATTCATTT+CGG 0.357403 tig0026810:-17876 None:intergenic
AGCTGTCCCTTCTAACCTTC+AGG 0.361138 tig0026810:+18320 Msa1431170:CDS
TTTACAACGGGAGCACTTCT+TGG 0.364394 tig0026810:-16194 None:intergenic
TAAGGTTGCTTGTGTGGAAT+TGG 0.364996 tig0026810:+19762 Msa1431170:intron
CGTTTAGCTTCGGAATTCAA+TGG 0.369885 tig0026810:-20564 None:intergenic
AGTTAAGAACACCGGGCATT+GGG 0.372286 tig0026810:-16132 None:intergenic
GCCGCTTGTTGCCTACTTGT+TGG 0.374111 tig0026810:+17843 Msa1431170:CDS
GTTGTAAAGGCGTTCGATAT+TGG 0.375635 tig0026810:+16209 Msa1431170:CDS
ACTCTCAAATGTGAAGGATT+TGG 0.377040 tig0026810:+20605 Msa1431170:CDS
ATTGGAGGAGGTGCTTTCTC+AGG 0.377052 tig0026810:+19780 Msa1431170:CDS
GGGCTAAGATTTAAAGTCTC+AGG 0.378765 tig0026810:-19484 None:intergenic
AACAGTCGCATTGGAATTCC+GGG 0.387892 tig0026810:+16853 Msa1431170:CDS
ACATCTTTAGGCTTCTTGAT+AGG 0.387941 tig0026810:-17026 None:intergenic
TGTTTAAGGCTTCTGCTGCT+GGG 0.390727 tig0026810:+16949 Msa1431170:CDS
ACACCATTAGTTGCCCCATT+TGG 0.392340 tig0026810:-16927 None:intergenic
AAGCATTTAACATATCAATA+TGG 0.393717 tig0026810:-19564 None:intergenic
CTATCTCGTTTGCCTAATAT+CGG 0.393985 tig0026810:+18066 Msa1431170:CDS
GCTGGGTCTTGTCCTTCTCC+AGG 0.397149 tig0026810:+20927 Msa1431170:CDS
CCAGAATCAAAGGTTTCTTC+TGG 0.404756 tig0026810:+20366 Msa1431170:CDS
ACAGAAAAGGACAGAGGAAA+TGG 0.411132 tig0026810:+21167 Msa1431170:CDS
TCAAGGATTTCAGGGGAAAC+TGG 0.412917 tig0026810:+19614 Msa1431170:CDS
ACTGTTAAAGAGTGGCTTGA+TGG 0.417050 tig0026810:+18826 Msa1431170:CDS
AGCTTCTGAGTTCAATTCAA+TGG 0.418219 tig0026810:-20406 None:intergenic
CAGCCTGAAGTCTCTTCTAT+AGG 0.419780 tig0026810:-20876 None:intergenic
ATTGGGGAGGTGGGAGAAGA+AGG 0.422557 tig0026810:-16115 None:intergenic
GCTGCTGTTTGGCAGGTGTC+AGG 0.425121 tig0026810:+19073 Msa1431170:intron
ATATCGAACGCCTTTACAAC+GGG 0.425342 tig0026810:-16206 None:intergenic
GTATTTAACTCGGCTCCAAA+TGG 0.425765 tig0026810:+16912 Msa1431170:CDS
ATTTCAGGGGAAACTGGTAT+AGG 0.426965 tig0026810:+19620 Msa1431170:CDS
TACATGCAGAGTGGGAGGTT+TGG 0.427282 tig0026810:+19436 Msa1431170:intron
ATTCGGTAGTTTGAATTTGA+AGG 0.428268 tig0026810:-20215 None:intergenic
CGAACAGTGGAAGTGGAACC+TGG 0.429811 tig0026810:+20258 Msa1431170:CDS
CTAGTGGTTACGGTACTTCC+AGG 0.430005 tig0026810:+17003 Msa1431170:CDS
AGTTTAACAAATTCATCATA+AGG 0.431172 tig0026810:-17620 None:intergenic
AACACCGGGCATTGGGGAGG+TGG 0.435518 tig0026810:-16125 None:intergenic
TCTCCAGCTTCACTCATGTA+AGG 0.436136 tig0026810:-19505 None:intergenic
GCTCCAAATGGGGCAACTAA+TGG 0.437343 tig0026810:+16924 Msa1431170:CDS
AGGTGTACTGCCCGACCATC+AGG 0.437934 tig0026810:+20192 Msa1431170:intron
TATTTAACTCGGCTCCAAAT+GGG 0.439240 tig0026810:+16913 Msa1431170:CDS
CATTTCTAAGGTTGCTTGTG+TGG 0.445065 tig0026810:+19756 Msa1431170:intron
GACTCTTGAATTGTGGAAAC+AGG 0.446722 tig0026810:+17678 Msa1431170:CDS
CTTCATGTGGAGTAGCAGAT+TGG 0.451994 tig0026810:-21106 None:intergenic
TACGTTGAATTGTGATTCTA+GGG 0.454479 tig0026810:-15938 None:intergenic
CTGTTAAAGAGTGGCTTGAT+GGG 0.454725 tig0026810:+18827 Msa1431170:CDS
AATTTGAAGGCCTGATGGTC+GGG 0.458437 tig0026810:-20202 None:intergenic
TCTCCCACCTCCCCAATGCC+CGG 0.458535 tig0026810:+16121 Msa1431170:CDS
TGTTGCCTACTTGTTGGAGA+AGG 0.460863 tig0026810:+17849 Msa1431170:CDS
GTTGTCTCCTGAAGGTTAGA+AGG 0.461570 tig0026810:-18327 None:intergenic
TGATATTAGTCCAGAATTGA+AGG 0.462584 tig0026810:+20659 Msa1431170:CDS
TCTTCAACAACATGAGAAAT+GGG 0.467804 tig0026810:-20828 None:intergenic
GACTTGACAGTTGAAATTCA+TGG 0.470241 tig0026810:+18766 Msa1431170:CDS
CAAGATGATACTGGTGTGGC+TGG 0.472932 tig0026810:+20909 Msa1431170:CDS
CTGCTACATCAAGGATTTCA+GGG 0.473698 tig0026810:+19606 Msa1431170:CDS
TAATATTAGTCAAGAATTGA+AGG 0.477301 tig0026810:+20509 Msa1431170:CDS
GATGTCTAACCTCAGATTGA+AGG 0.479128 tig0026810:-18377 None:intergenic
TCAACGTAGATGCTTGTAAT+CGG 0.479652 tig0026810:+15953 Msa1431170:exon
AAATTCACGGAATAGCAGAT+TGG 0.485471 tig0026810:+22474 Msa1431170:three_prime_UTR
GAGCGGTGAATATGAATTGA+AGG 0.486940 tig0026810:-16003 None:intergenic
AGACCTATAGAAGAGACTTC+AGG 0.487841 tig0026810:+20873 Msa1431170:CDS
CAGAATGTCAACAGTCGCAT+TGG 0.488151 tig0026810:+16844 Msa1431170:CDS
ACTATTTAACTGGGACAAGC+CGG 0.489316 tig0026810:+17640 Msa1431170:CDS
GAGTTAAGAACACCGGGCAT+TGG 0.490369 tig0026810:-16133 None:intergenic
AGACTGCTCTCGTTTAGCTT+CGG 0.490718 tig0026810:-20574 None:intergenic
TTCAAACTACCGAATCTTCA+GGG 0.492835 tig0026810:+20223 Msa1431170:CDS
AGCTTCGGAATTCAATGGAA+TGG 0.494486 tig0026810:-20559 None:intergenic
GTTGCCTACTTGTTGGAGAA+GGG 0.495969 tig0026810:+17850 Msa1431170:CDS
TGGAGATGCTGCCTCGTTGG+AGG 0.497630 tig0026810:+18786 Msa1431170:CDS
TTTAGGCTTCTTGATAGGCC+TGG 0.501943 tig0026810:-17021 None:intergenic
GAAGCGCAAACAGCACAAAC+AGG 0.506304 tig0026810:-16163 None:intergenic
AGCCCTTACATGAGTGAAGC+TGG 0.509985 tig0026810:+19502 Msa1431170:CDS
GCGCAAGATCAAGATGATAC+TGG 0.513020 tig0026810:+20900 Msa1431170:CDS
GGTTGCTTGTGTGGAATTGG+AGG 0.513299 tig0026810:+19765 Msa1431170:intron
TCTAAATTTGGCTTGCACAT+TGG 0.514422 tig0026810:-22632 None:intergenic
AGGAAATGGAATTAAGAAAG+TGG 0.515604 tig0026810:+21181 Msa1431170:CDS
GTTTAAGGCTTCTGCTGCTG+GGG 0.516084 tig0026810:+16950 Msa1431170:CDS
CCAGAATTGAAGGTTTCATC+CGG 0.517764 tig0026810:+20669 Msa1431170:CDS
AGAAATTACATTCATTTCGG+TGG 0.518618 tig0026810:-17873 None:intergenic
AAACGAGATAGAATATTCAT+TGG 0.521393 tig0026810:-18054 None:intergenic
CCTTGTGGACTCTTGAATTG+TGG 0.523172 tig0026810:+17671 Msa1431170:CDS
TCATGGAGATGCTGCCTCGT+TGG 0.523431 tig0026810:+18783 Msa1431170:CDS
GATTTGATTGATGTGGATAT+GGG 0.526237 tig0026810:+20849 Msa1431170:CDS
AAAAGAGCGAACAGTGGAAG+TGG 0.526891 tig0026810:+20251 Msa1431170:CDS
AAGAAGTGCTCCCGTTGTAA+AGG 0.526930 tig0026810:+16196 Msa1431170:CDS
GAAAATATGTATAAATGTGA+GGG 0.527072 tig0026810:+18850 Msa1431170:CDS
GGCTAAGATTTAAAGTCTCA+GGG 0.529508 tig0026810:-19483 None:intergenic
TGCTTCCTATCCCACAGAAA+AGG 0.530729 tig0026810:+21154 Msa1431170:CDS
TGGTGGTCGCCTTCAATCTG+AGG 0.532511 tig0026810:+18368 Msa1431170:CDS
CTATTTAACTGGGACAAGCC+GGG 0.536675 tig0026810:+17641 Msa1431170:CDS
TGCTTGTGTGGAATTGGAGG+AGG 0.537419 tig0026810:+19768 Msa1431170:CDS
ACAACGGGAGCACTTCTTGG+TGG 0.537857 tig0026810:-16191 None:intergenic
TTTCTCCACCAAATTCATCA+AGG 0.540291 tig0026810:-18296 None:intergenic
AAGGATTTGGCTTGCAGTAG+AGG 0.541242 tig0026810:+20618 Msa1431170:CDS
GTTTGCCTTGATGAATTTGG+TGG 0.542148 tig0026810:+18291 Msa1431170:CDS
GCACTGGTACCTAGTGGTTA+CGG 0.542766 tig0026810:+16993 Msa1431170:CDS
GACGATGCATATTATGGCAA+TGG 0.543723 tig0026810:+21068 Msa1431170:CDS
GACGATGCATATTATGGCAA+TGG 0.543723 tig0026810:+22594 Msa1431170:three_prime_UTR
TGTATCTTCCAAATCTGCAC+TGG 0.545729 tig0026810:-22538 None:intergenic
TCATTACATCTGCTACATCA+AGG 0.545852 tig0026810:+19597 Msa1431170:CDS
AAATCAGTATGAAAGTATGA+TGG 0.546011 tig0026810:+18744 Msa1431170:CDS
GAATTTGAAGGCCTGATGGT+CGG 0.546387 tig0026810:-20203 None:intergenic
ACACCGGGCATTGGGGAGGT+GGG 0.548171 tig0026810:-16124 None:intergenic
AGCGGATAAGTTAATAATGT+AGG 0.548228 tig0026810:+21211 Msa1431170:CDS
AAAGTCATGTTGAAAGAGCA+AGG 0.548323 tig0026810:+18010 Msa1431170:CDS
AAGAGCAAGGCTAAGTTCAC+AGG 0.548821 tig0026810:+18023 Msa1431170:CDS
AGTCCACAAGGAGGAAATCC+CGG 0.549196 tig0026810:-17659 None:intergenic
TGATATTAGTCCAGAATCAA+AGG 0.549744 tig0026810:+20356 Msa1431170:CDS
AGGATCGAATTTGATTGCAC+TGG 0.551144 tig0026810:+16977 Msa1431170:CDS
TGTTGAAGATTTGATTGATG+TGG 0.552841 tig0026810:+20842 Msa1431170:CDS
CGGTGCCAATGTATTTAACT+CGG 0.553052 tig0026810:+16902 Msa1431170:CDS
TACATGAGTGAAGCTGGAGA+TGG 0.554559 tig0026810:+19508 Msa1431170:CDS
GATTCTGGACTAATATCAGA+TGG 0.557858 tig0026810:-20351 None:intergenic
ATTTGTTAAACTATTTAACT+GGG 0.558747 tig0026810:+17631 Msa1431170:CDS
CCAAGGCCTTCACATTTGAA+AGG 0.559724 tig0026810:-20302 None:intergenic
TGGAGCCGAGTTAAATACAT+TGG 0.560300 tig0026810:-16907 None:intergenic
ATCAGTTTACTGTTAAAGAG+TGG 0.561460 tig0026810:+18818 Msa1431170:CDS
TTGGAGGAGGTGCTTTCTCA+GGG 0.561855 tig0026810:+19781 Msa1431170:CDS
TTCAATAGATTATCGAAATG+TGG 0.567333 tig0026810:+20992 Msa1431170:CDS
AGAAGACTCGTAATCGTAGC+CGG 0.568605 tig0026810:-20688 None:intergenic
GTCAGGACTATGTAAAGGCA+TGG 0.569704 tig0026810:+19090 Msa1431170:CDS
AAGCCGGGATTTCCTCCTTG+TGG 0.571221 tig0026810:+17656 Msa1431170:CDS
GTTTGAATTTGAAGGCCTGA+TGG 0.572545 tig0026810:-20207 None:intergenic
GGAAAATATGTATAAATGTG+AGG 0.576041 tig0026810:+18849 Msa1431170:CDS
AACAGCACAAACAGGCTCAT+CGG 0.576494 tig0026810:-16155 None:intergenic
CTCCAGCTTCACTCATGTAA+GGG 0.583020 tig0026810:-19504 None:intergenic
GGCTTGCAGTAGAGATTGTG+AGG 0.586486 tig0026810:+20473 Msa1431170:CDS
GGCTTGCAGTAGAGGTTGTG+AGG 0.586486 tig0026810:+20626 Msa1431170:CDS
TGAATGCCTTTCAAATGTGA+AGG 0.588206 tig0026810:+20296 Msa1431170:CDS
TCTTGACTAATATTATCAGA+TGG 0.589574 tig0026810:-20501 None:intergenic
CAGGTGTCAGGACTATGTAA+AGG 0.591503 tig0026810:+19085 Msa1431170:intron
CTGGAAGTACCGTAACCACT+AGG 0.593348 tig0026810:-17002 None:intergenic
AAGAACACCGGGCATTGGGG+AGG 0.596034 tig0026810:-16128 None:intergenic
TTGTAATCGGTGGTGTATCG+TGG 0.596551 tig0026810:+15966 Msa1431170:CDS
AATTCTGGACTAATATCAGA+TGG 0.597678 tig0026810:-20654 None:intergenic
CTCATCGGAGTTAAGAACAC+CGG 0.597915 tig0026810:-16140 None:intergenic
CCACAATTCAAGAGTCCACA+AGG 0.598367 tig0026810:-17671 None:intergenic
AATATCGAACGCCTTTACAA+CGG 0.598805 tig0026810:-16207 None:intergenic
GTATAGGATTGATGACTCAA+AGG 0.599011 tig0026810:+19636 Msa1431170:CDS
GGATTGCAATAGAGATTGTG+AGG 0.599183 tig0026810:+20323 Msa1431170:CDS
GCTACTCCACATGAAGATGC+TGG 0.600337 tig0026810:+21113 Msa1431170:CDS
TTTAAGGCTTCTGCTGCTGG+GGG 0.600788 tig0026810:+16951 Msa1431170:CDS
TGTTGTACATGCAGAGTGGG+AGG 0.601756 tig0026810:+19431 Msa1431170:intron
TTGTCTCCTGAAGGTTAGAA+GGG 0.606448 tig0026810:-18326 None:intergenic
GAAGTCGACGCTAATTTCGA+AGG 0.607230 tig0026810:+16082 Msa1431170:CDS
ACAATCTCTATTGCAATCCA+AGG 0.607278 tig0026810:-20319 None:intergenic
ACTCTCAAATGTGAAGGTGT+TGG 0.608500 tig0026810:+20452 Msa1431170:CDS
TCATTTGGTAAACCTGGAGA+AGG 0.610432 tig0026810:-20939 None:intergenic
TCATCGGAGTTAAGAACACC+GGG 0.610855 tig0026810:-16139 None:intergenic
GGATAATGGTTGTCTCCTGA+AGG 0.611966 tig0026810:-18335 None:intergenic
AAGATGATACTGGTGTGGCT+GGG 0.612233 tig0026810:+20910 Msa1431170:CDS
AGGATGCTCACGAGTTCATG+AGG 0.612750 tig0026810:+18115 Msa1431170:CDS
TGTTAAAGAGTGGCTTGATG+GGG 0.613216 tig0026810:+18828 Msa1431170:CDS
GACTTCGAAGTATTTAGAAG+CGG 0.613603 tig0026810:-16065 None:intergenic
GTGGCCCTTCTCCAACAAGT+AGG 0.614253 tig0026810:-17854 None:intergenic
GTTAAGAACACCGGGCATTG+GGG 0.614434 tig0026810:-16131 None:intergenic
AGCTAAAAGAGAGCAGTCTG+AGG 0.617289 tig0026810:+20425 Msa1431170:CDS
TGTAATCGGTGGTGTATCGT+GGG 0.618092 tig0026810:+15967 Msa1431170:CDS
TCCAACAAGTAGGCAACAAG+CGG 0.618914 tig0026810:-17844 None:intergenic
AATAGATTATCGAAATGTGG+AGG 0.625891 tig0026810:+20995 Msa1431170:CDS
TTTAGGTTATGGAAGACAAG+AGG 0.626868 tig0026810:+18095 Msa1431170:CDS
AAGATTTAAAGTCTCAGGGA+AGG 0.629675 tig0026810:-19479 None:intergenic
ATTTAACTCGGCTCCAAATG+GGG 0.631267 tig0026810:+16914 Msa1431170:CDS
TCCAATAGCGATTACAAGAG+CGG 0.633349 tig0026810:-16020 None:intergenic
TCTCGTTTGCCTAATATCGG+TGG 0.635704 tig0026810:+18069 Msa1431170:CDS
ACGTAGATGCTTGTAATCGG+TGG 0.640137 tig0026810:+15956 Msa1431170:exon
GGACACACTCTCAAATGTGA+AGG 0.640467 tig0026810:+20599 Msa1431170:CDS
GTGATTGTGATTGTGATTTG+GGG 0.640769 tig0026810:+15870 Msa1431170:five_prime_UTR
TTCGGAATTCAATGGAATGG+AGG 0.641913 tig0026810:-20556 None:intergenic
TTGATTGCACTGGTACCTAG+TGG 0.650467 tig0026810:+16987 Msa1431170:CDS
TAAGAAAGTGGAAATATCAG+CGG 0.652441 tig0026810:+21193 Msa1431170:CDS
GGACACACTCTCAAATGTGA+AGG 0.654382 tig0026810:+20446 Msa1431170:CDS
AAAATATGTATAAATGTGAG+GGG 0.663025 tig0026810:+18851 Msa1431170:CDS
AGAGTACCAGCATCTTCATG+TGG 0.664519 tig0026810:-21119 None:intergenic
TGTGGGATAGGAAGCAACAC+CGG 0.677681 tig0026810:-21147 None:intergenic
TGCTACATCAAGGATTTCAG+GGG 0.678694 tig0026810:+19607 Msa1431170:CDS
AGCTAAACGAGAGCAGTCTG+CGG 0.683742 tig0026810:+20578 Msa1431170:CDS
AGATTTGGAAGATACAGATG+CGG 0.692292 tig0026810:+21019 Msa1431170:CDS
AGATCAAGATGATACTGGTG+TGG 0.712390 tig0026810:+20905 Msa1431170:CDS
GAATGTAAAAGAGCGAACAG+TGG 0.713953 tig0026810:+20245 Msa1431170:CDS
AGATTTGGAAGATACAGATG+CGG 0.714200 tig0026810:+22545 Msa1431170:three_prime_UTR
TATCCCACAGAAAAGGACAG+AGG 0.718301 tig0026810:+21161 Msa1431170:CDS
CAATTCAAGAGTCCACAAGG+AGG 0.738078 tig0026810:-17668 None:intergenic
ATCTAGACATTCCTCCAACG+AGG 0.743248 tig0026810:-18797 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAAAATATTTTTTT+AGG + tig0026810:18244-18263 Msa1431170:intron 0.0%
!! TAATAATGATGAAATAAAAA+GGG - tig0026810:16491-16510 None:intergenic 10.0%
!! TTAATAATGATGAAATAAAA+AGG - tig0026810:16492-16511 None:intergenic 10.0%
!!! AAATCTAAAATTTATATCTT+AGG - tig0026810:18618-18637 None:intergenic 10.0%
!!! TTATAATAACTATTTTTGTT+TGG + tig0026810:18958-18977 Msa1431170:intron 10.0%
!!! GATTTAATTTATCATTATTG+TGG + tig0026810:16334-16353 Msa1431170:intron 15.0%
!! TTAAATAGAGAAAGAAAAAA+AGG + tig0026810:16425-16444 Msa1431170:intron 15.0%
!! CAATAATAATGATGAATTAA+GGG - tig0026810:16664-16683 None:intergenic 15.0%
!! ACAATAATAATGATGAATTA+AGG - tig0026810:16665-16684 None:intergenic 15.0%
!! TAAAAGAAAATTACATCTTT+AGG - tig0026810:17041-17060 None:intergenic 15.0%
!! TTCGTAAAAAACTAAATTAT+TGG + tig0026810:17276-17295 Msa1431170:intron 15.0%
!!! TTTGTCTATATTTTGTTTAT+AGG + tig0026810:17529-17548 Msa1431170:intron 15.0%
!!! TTGTCTATATTTTGTTTATA+GGG + tig0026810:17530-17549 Msa1431170:intron 15.0%
!!! AATTTGTTAAACTATTTAAC+TGG + tig0026810:17630-17649 Msa1431170:CDS 15.0%
!!! ATTTGTTAAACTATTTAACT+GGG + tig0026810:17631-17650 Msa1431170:CDS 15.0%
!! TTAAGAAATTACATTCATTT+CGG - tig0026810:17879-17898 None:intergenic 15.0%
!!! TTAACTTCTTTTTTTCATAA+TGG + tig0026810:17900-17919 Msa1431170:intron 15.0%
!! TTACATCTATAATAAAATAG+AGG + tig0026810:18456-18475 Msa1431170:intron 15.0%
!! TTATTATTGTGAAACTAAAT+AGG + tig0026810:18693-18712 Msa1431170:intron 15.0%
!! CTATTTAGTTATACAATAAA+CGG + tig0026810:18888-18907 Msa1431170:intron 15.0%
!!! ATTTTCTCATGTTTTTTTTT+TGG + tig0026810:19406-19425 Msa1431170:intron 15.0%
!!! TTTTCTCATGTTTTTTTTTT+GGG + tig0026810:19407-19426 Msa1431170:intron 15.0%
!! AAATAGTAAAAAGTTTCATT+GGG - tig0026810:19671-19690 None:intergenic 15.0%
!! AAAATAGTAAAAAGTTTCAT+TGG - tig0026810:19672-19691 None:intergenic 15.0%
!!! CTTTTTACTATTTTTCTTTT+TGG + tig0026810:19678-19697 Msa1431170:intron 15.0%
!!! AAATCAAAAAAGTGTCATTA+TGG - tig0026810:16319-16338 None:intergenic 20.0%
!!! ATGATTATGATTAGTTGTTT+TGG + tig0026810:16362-16381 Msa1431170:intron 20.0%
!!! GTTGTTTTGTTTTGTTTATT+TGG + tig0026810:16540-16559 Msa1431170:intron 20.0%
!!! ACTAGTTGTTTTGATTTTTT+TGG + tig0026810:16703-16722 Msa1431170:intron 20.0%
!! GTTATGTGTTTGTAATAATT+AGG + tig0026810:16725-16744 Msa1431170:intron 20.0%
!! GTTTGTAATAATTAGGAATT+AGG + tig0026810:16732-16751 Msa1431170:intron 20.0%
!!! TTTAAGATCTGAATTTAGTT+TGG + tig0026810:16790-16809 Msa1431170:intron 20.0%
!! AAAAAATGCAAAAGTAATAG+CGG + tig0026810:16882-16901 Msa1431170:CDS 20.0%
!!! AAGCACAATATTTGTAATTT+TGG - tig0026810:17586-17605 None:intergenic 20.0%
!! AGTTTAACAAATTCATCATA+AGG - tig0026810:17623-17642 None:intergenic 20.0%
!! AGATAATCCAAAACTAAATA+TGG - tig0026810:18216-18235 None:intergenic 20.0%
!!! TAAAATTAACAGTTTGTTGT+TGG + tig0026810:18409-18428 Msa1431170:intron 20.0%
!! TATAATAAAATAGAGGCTAA+AGG + tig0026810:18463-18482 Msa1431170:intron 20.0%
!! ATTGCATAGAAATCAAATAT+TGG - tig0026810:18575-18594 None:intergenic 20.0%
!! GAAAATATGTATAAATGTGA+GGG + tig0026810:18850-18869 Msa1431170:CDS 20.0%
!! AAAATATGTATAAATGTGAG+GGG + tig0026810:18851-18870 Msa1431170:CDS 20.0%
!! CGTTTATTGTATAACTAAAT+AGG - tig0026810:18890-18909 None:intergenic 20.0%
!! TGTTTATTAATTGAATGTAG+AGG + tig0026810:18913-18932 Msa1431170:intron 20.0%
!! AAGCATTTAACATATCAATA+TGG - tig0026810:19567-19586 None:intergenic 20.0%
!!! ATGTTAAATGCTTCATTTTT+TGG + tig0026810:19574-19593 Msa1431170:CDS 20.0%
!!! TAAACCAAAGAAAATTTTGA+GGG - tig0026810:19839-19858 None:intergenic 20.0%
!! TTTCTAAGTGCTAAAATTTA+AGG - tig0026810:19988-20007 None:intergenic 20.0%
!! TAATATTAGTCAAGAATTGA+AGG + tig0026810:20509-20528 Msa1431170:CDS 20.0%
!!! ATTATTAAGAAAGTTGTTTC+TGG + tig0026810:21522-21541 Msa1431170:intron 20.0%
!!! GTAATCTTAAATGTGTTATT+AGG + tig0026810:21909-21928 Msa1431170:intron 20.0%
!!! AATTTTCTCATAAATCTCTT+GGG + tig0026810:21934-21953 Msa1431170:intron 20.0%
!!! GAAAAGTGTTTTTTTTTTTG+TGG + tig0026810:21958-21977 Msa1431170:intron 20.0%
!!! CTTTTTTATTGTGTTTCTTT+TGG + tig0026810:22070-22089 Msa1431170:intron 20.0%
!! TTTTCATTGATCGTGAATTA+GGG - tig0026810:15917-15936 None:intergenic 25.0%
!! TTTTTCATTGATCGTGAATT+AGG - tig0026810:15918-15937 None:intergenic 25.0%
!! CAACGATTTTTAAATATAGC+AGG - tig0026810:16288-16307 None:intergenic 25.0%
!!! TTAGTTGTTTTGATTGTGTT+AGG + tig0026810:16456-16475 Msa1431170:intron 25.0%
!!! TTTTTGTTGTGTTAGAATAC+TGG + tig0026810:16630-16649 Msa1431170:intron 25.0%
! TTATAGGGTTAAATCTTGTA+TGG + tig0026810:17545-17564 Msa1431170:intron 25.0%
!! TTACAAATATTGTGCTTTTC+AGG + tig0026810:17589-17608 Msa1431170:intron 25.0%
! TCATTATTAACTGAGATATG+AGG + tig0026810:17743-17762 Msa1431170:intron 25.0%
! CATTATTAACTGAGATATGA+GGG + tig0026810:17744-17763 Msa1431170:intron 25.0%
! AAACGAGATAGAATATTCAT+TGG - tig0026810:18057-18076 None:intergenic 25.0%
!! TACCATTTCAATTTTTGTAG+TGG + tig0026810:18156-18175 Msa1431170:intron 25.0%
! ATCCACTACAAAAATTGAAA+TGG - tig0026810:18161-18180 None:intergenic 25.0%
! TCCAAAACTAAATATGGAAT+AGG - tig0026810:18210-18229 None:intergenic 25.0%
! TAACTTCTCAAGTTAAATGT+GGG - tig0026810:18538-18557 None:intergenic 25.0%
! GAAATCAAATATTGGCAATT+GGG - tig0026810:18567-18586 None:intergenic 25.0%
! AGAAATCAAATATTGGCAAT+TGG - tig0026810:18568-18587 None:intergenic 25.0%
! TGATTTCTATGCAATCTTTA+TGG + tig0026810:18580-18599 Msa1431170:intron 25.0%
!! AAATCAGTATGAAAGTATGA+TGG + tig0026810:18744-18763 Msa1431170:CDS 25.0%
! GGAAAATATGTATAAATGTG+AGG + tig0026810:18849-18868 Msa1431170:CDS 25.0%
! AAGGCAATTGTAAGAATATT+TGG - tig0026810:19140-19159 None:intergenic 25.0%
! CATATATGCTGTTGTATAAA+AGG + tig0026810:19806-19825 Msa1431170:CDS 25.0%
!! GTAAACCAAAGAAAATTTTG+AGG - tig0026810:19840-19859 None:intergenic 25.0%
! AAAAACTGAATATATCACGT+TGG - tig0026810:19878-19897 None:intergenic 25.0%
! TAAGTTATTCAAATAACCAG+AGG - tig0026810:20032-20051 None:intergenic 25.0%
! TGAATAACTTACAGTTTATC+TGG + tig0026810:20041-20060 Msa1431170:intron 25.0%
! TCTTGACTAATATTATCAGA+TGG - tig0026810:20504-20523 None:intergenic 25.0%
!! ACCAAATGATTTTTCTTTCT+TGG + tig0026810:20953-20972 Msa1431170:CDS 25.0%
! TCCAAGAAAGAAAAATCATT+TGG - tig0026810:20957-20976 None:intergenic 25.0%
! TTCAATAGATTATCGAAATG+TGG + tig0026810:20992-21011 Msa1431170:CDS 25.0%
! TATCATTTATATCCCATCAT+CGG + tig0026810:21261-21280 Msa1431170:intron 25.0%
!!! AGTTGGGAAATTTTTTTTCT+GGG + tig0026810:21296-21315 Msa1431170:intron 25.0%
! AAAAGTTAAAATGAGATCCA+AGG - tig0026810:21341-21360 None:intergenic 25.0%
!!! CTCATTTTAACTTTTCTAGA+TGG + tig0026810:21346-21365 Msa1431170:intron 25.0%
! TTCTTTATGTACAGAATGAA+GGG - tig0026810:21426-21445 None:intergenic 25.0%
! TTTCTTTATGTACAGAATGA+AGG - tig0026810:21427-21446 None:intergenic 25.0%
! ATTTGTACAATCATAGTATC+AGG - tig0026810:21563-21582 None:intergenic 25.0%
! AAATACATGGCAAAAAAATG+TGG - tig0026810:21634-21653 None:intergenic 25.0%
!!! ATAAGCAATGAATGTTGTTT+TGG + tig0026810:21798-21817 Msa1431170:intron 25.0%
!! GAATTTTCTCATAAATCTCT+TGG + tig0026810:21933-21952 Msa1431170:intron 25.0%
! TTTGTGGTCAAATAATCTAA+TGG + tig0026810:21974-21993 Msa1431170:intron 25.0%
! AATACAAATATGTGAACTCA+TGG + tig0026810:22366-22385 Msa1431170:intron 25.0%
TTGTGATTGTGATTGTGATT+TGG + tig0026810:15862-15881 Msa1431170:five_prime_UTR 30.0%
TGTGATTGTGATTGTGATTT+GGG + tig0026810:15869-15888 Msa1431170:five_prime_UTR 30.0%
TACGTTGAATTGTGATTCTA+GGG - tig0026810:15941-15960 None:intergenic 30.0%
!! TTTTGATTGTGTTAGGATAC+TGG + tig0026810:16463-16482 Msa1431170:intron 30.0%
! TGGTTAACTGATTGTTGATT+AGG + tig0026810:16560-16579 Msa1431170:intron 30.0%
! CTGATTGTTGATTAGGAATT+AGG + tig0026810:16567-16586 Msa1431170:intron 30.0%
!!! TTTGCATTTTTTCTTATGCC+CGG - tig0026810:16874-16893 None:intergenic 30.0%
AAATATAGACAAAGTCACCA+AGG - tig0026810:17522-17541 None:intergenic 30.0%
AGAAATTACATTCATTTCGG+TGG - tig0026810:17876-17895 None:intergenic 30.0%
TTTCAGGCATTTGTAATGAT+TGG + tig0026810:17968-17987 Msa1431170:intron 30.0%
!! GCCTATTCCATATTTAGTTT+TGG + tig0026810:18206-18225 Msa1431170:intron 30.0%
! ACCATTATCCAACACATTTT+TGG + tig0026810:18348-18367 Msa1431170:CDS 30.0%
ACCAAAAATGTGTTGGATAA+TGG - tig0026810:18352-18371 None:intergenic 30.0%
!! ATTATCCAACACATTTTTGG+TGG + tig0026810:18351-18370 Msa1431170:CDS 30.0%
!! ATTAACAGTTTGTTGTTGGA+AGG + tig0026810:18413-18432 Msa1431170:intron 30.0%
CTAACTTCTCAAGTTAAATG+TGG - tig0026810:18539-18558 None:intergenic 30.0%
AAGATTAAGACAGAAGCAAA+TGG - tig0026810:18667-18686 None:intergenic 30.0%
ATCAGTTTACTGTTAAAGAG+TGG + tig0026810:18818-18837 Msa1431170:CDS 30.0%
!! TTTTTGTTTGGAACTTTGAG+TGG + tig0026810:18970-18989 Msa1431170:intron 30.0%
CAGCATAACATGTTAAAAGA+CGG - tig0026810:19057-19076 None:intergenic 30.0%
ACATAGAAACTTGAAACTTC+AGG + tig0026810:19360-19379 Msa1431170:intron 30.0%
! TTTTAGTATCCTCATTTGTG+TGG + tig0026810:19728-19747 Msa1431170:intron 30.0%
TCTGGTGTTTGTTTAAAGAA+TGG + tig0026810:20059-20078 Msa1431170:intron 30.0%
ATGGTTACGATATTTGATGT+TGG + tig0026810:20078-20097 Msa1431170:intron 30.0%
TGGTTACGATATTTGATGTT+GGG + tig0026810:20079-20098 Msa1431170:intron 30.0%
!!! TGTAATTCTTGTTTTGATCC+TGG + tig0026810:20167-20186 Msa1431170:intron 30.0%
ATTCGGTAGTTTGAATTTGA+AGG - tig0026810:20218-20237 None:intergenic 30.0%
! TTTTACATTCCCTGAAGATT+CGG - tig0026810:20235-20254 None:intergenic 30.0%
TGATATTAGTCCAGAATCAA+AGG + tig0026810:20356-20375 Msa1431170:CDS 30.0%
AATTCTGGACTAATATCAGA+TGG - tig0026810:20657-20676 None:intergenic 30.0%
TGATATTAGTCCAGAATTGA+AGG + tig0026810:20659-20678 Msa1431170:CDS 30.0%
TCTTCAACAACATGAGAAAT+GGG - tig0026810:20831-20850 None:intergenic 30.0%
ATCTTCAACAACATGAGAAA+TGG - tig0026810:20832-20851 None:intergenic 30.0%
TGTTGAAGATTTGATTGATG+TGG + tig0026810:20842-20861 Msa1431170:CDS 30.0%
AGATTTGATTGATGTGGATA+TGG + tig0026810:20848-20867 Msa1431170:CDS 30.0%
GATTTGATTGATGTGGATAT+GGG + tig0026810:20849-20868 Msa1431170:CDS 30.0%
GAAAAATCATTTGGTAAACC+TGG - tig0026810:20948-20967 None:intergenic 30.0%
AATAGATTATCGAAATGTGG+AGG + tig0026810:20995-21014 Msa1431170:CDS 30.0%
AGGAAATGGAATTAAGAAAG+TGG + tig0026810:21181-21200 Msa1431170:CDS 30.0%
TAAGAAAGTGGAAATATCAG+CGG + tig0026810:21193-21212 Msa1431170:CDS 30.0%
AGCGGATAAGTTAATAATGT+AGG + tig0026810:21211-21230 Msa1431170:CDS 30.0%
!!! GAGTTGGGAAATTTTTTTTC+TGG + tig0026810:21295-21314 Msa1431170:intron 30.0%
!!! GTTGGGAAATTTTTTTTCTG+GGG + tig0026810:21297-21316 Msa1431170:intron 30.0%
AATGATAGAGCATAATTCCT+TGG + tig0026810:21391-21410 Msa1431170:intron 30.0%
!! GTTTCTGGTACAAAATACTT+TGG + tig0026810:21537-21556 Msa1431170:intron 30.0%
TTCACAATTTGAAGAACAGT+GGG + tig0026810:21594-21613 Msa1431170:intron 30.0%
! TTTTGCCATGTATTTATAGC+AGG + tig0026810:21639-21658 Msa1431170:intron 30.0%
TGGCTAGAAATTCACATTTA+AGG + tig0026810:21994-22013 Msa1431170:intron 30.0%
! CACATTTAAGGTGATTAAGT+CGG + tig0026810:22006-22025 Msa1431170:intron 30.0%
CCACATATAATTCTTAAACG+TGG - tig0026810:22104-22123 None:intergenic 30.0%
CCACGTTTAAGAATTATATG+TGG + tig0026810:22101-22120 Msa1431170:intron 30.0%
GAAGTCATTTCAGTTATATG+TGG + tig0026810:22277-22296 Msa1431170:intron 30.0%
! CTACCTATGTGATTTTTCTA+CGG - tig0026810:22314-22333 None:intergenic 30.0%
!! CACAATTTTAGCCAAATTCA+CGG + tig0026810:22461-22480 Msa1431170:intron 30.0%
GTGATTGTGATTGTGATTTG+GGG + tig0026810:15870-15889 Msa1431170:five_prime_UTR 35.0%
CTACGTTGAATTGTGATTCT+AGG - tig0026810:15942-15961 None:intergenic 35.0%
TCAACGTAGATGCTTGTAAT+CGG + tig0026810:15953-15972 Msa1431170:exon 35.0%
! GACTTCGAAGTATTTAGAAG+CGG - tig0026810:16068-16087 None:intergenic 35.0%
AATATCGAACGCCTTTACAA+CGG - tig0026810:16210-16229 None:intergenic 35.0%
TTGTGTTAGAATACTGGTAG+TGG + tig0026810:16636-16655 Msa1431170:intron 35.0%
TATTTAACTCGGCTCCAAAT+GGG + tig0026810:16913-16932 Msa1431170:CDS 35.0%
ACATCTTTAGGCTTCTTGAT+AGG - tig0026810:17029-17048 None:intergenic 35.0%
! TTATTATCCCTTGTTGTCGA+AGG + tig0026810:17090-17109 Msa1431170:intron 35.0%
TAAAACATCTTAGCACCTCA+AGG - tig0026810:17126-17145 None:intergenic 35.0%
! ACTTTCTAATCATGCTGCTT+GGG - tig0026810:17352-17371 None:intergenic 35.0%
AACTTTCTAATCATGCTGCT+TGG - tig0026810:17353-17372 None:intergenic 35.0%
! AGTTAGATGACTGAGCTTTT+TGG + tig0026810:17369-17388 Msa1431170:intron 35.0%
CTAAAGTTCGATCATGAGAA+GGG - tig0026810:17708-17727 None:intergenic 35.0%
!! TTGTAGTTGTTTTGCGAATG+TGG + tig0026810:17795-17814 Msa1431170:intron 35.0%
! CTAGTGCTTATGTTTGTTGA+CGG + tig0026810:17940-17959 Msa1431170:intron 35.0%
!!! TTTGTTGACGGTGTTTTTTC+AGG + tig0026810:17952-17971 Msa1431170:intron 35.0%
AAAGTCATGTTGAAAGAGCA+AGG + tig0026810:18010-18029 Msa1431170:CDS 35.0%
CTATCTCGTTTGCCTAATAT+CGG + tig0026810:18066-18085 Msa1431170:CDS 35.0%
! TTTAGGTTATGGAAGACAAG+AGG + tig0026810:18095-18114 Msa1431170:CDS 35.0%
TGGATTGTACATTAACTGTC+TGG + tig0026810:18176-18195 Msa1431170:intron 35.0%
GGATTGTACATTAACTGTCT+GGG + tig0026810:18177-18196 Msa1431170:intron 35.0%
TCTGTTTGCCTTGATGAATT+TGG + tig0026810:18288-18307 Msa1431170:CDS 35.0%
TTTCTCCACCAAATTCATCA+AGG - tig0026810:18299-18318 None:intergenic 35.0%
ATGTTCTCCAGGGTTATTAA+AGG + tig0026810:18488-18507 Msa1431170:intron 35.0%
TGTTCTCCAGGGTTATTAAA+GGG + tig0026810:18489-18508 Msa1431170:intron 35.0%
TTCTCAAGTTAAATGTGGGA+AGG - tig0026810:18534-18553 None:intergenic 35.0%
ATTAAGACAGAAGCAAATGG+TGG - tig0026810:18664-18683 None:intergenic 35.0%
GACTTGACAGTTGAAATTCA+TGG + tig0026810:18766-18785 Msa1431170:CDS 35.0%
ATGTATAAATGTGAGGGGTA+AGG + tig0026810:18856-18875 Msa1431170:intron 35.0%
TAACATGTTATGCTGCTGTT+TGG + tig0026810:19062-19081 Msa1431170:intron 35.0%
AATTGCCTTGAAAAGATTCC+AGG + tig0026810:19151-19170 Msa1431170:CDS 35.0%
TAGAACATATTACTCAGACC+TGG - tig0026810:19172-19191 None:intergenic 35.0%
!! TGTTTGTTGTCAGATGCTTT+AGG + tig0026810:19197-19216 Msa1431170:intron 35.0%
ATATCACATGAAGCACAAAG+GGG - tig0026810:19265-19284 None:intergenic 35.0%
CATATCACATGAAGCACAAA+GGG - tig0026810:19266-19285 None:intergenic 35.0%
TCATATCACATGAAGCACAA+AGG - tig0026810:19267-19286 None:intergenic 35.0%
TCAAGTTTCTATGTGTTAGC+AGG - tig0026810:19354-19373 None:intergenic 35.0%
! AAGATTTAAAGTCTCAGGGA+AGG - tig0026810:19482-19501 None:intergenic 35.0%
! GGCTAAGATTTAAAGTCTCA+GGG - tig0026810:19486-19505 None:intergenic 35.0%
TCATTACATCTGCTACATCA+AGG + tig0026810:19597-19616 Msa1431170:CDS 35.0%
! GTATAGGATTGATGACTCAA+AGG + tig0026810:19636-19655 Msa1431170:CDS 35.0%
AATGTAATGCCACACAAATG+AGG - tig0026810:19740-19759 None:intergenic 35.0%
TGTGTGGCATTACATTTCTA+AGG + tig0026810:19744-19763 Msa1431170:intron 35.0%
!! CCAAAGAAAATTTTGAGGGA+AGG - tig0026810:19835-19854 None:intergenic 35.0%
! CCTTCCCTCAAAATTTTCTT+TGG + tig0026810:19832-19851 Msa1431170:intron 35.0%
TGAATATATCACGTTGGCAA+GGG - tig0026810:19872-19891 None:intergenic 35.0%
AGAGCAAATGCAGTATGTAT+TGG - tig0026810:19963-19982 None:intergenic 35.0%
AATAACCAGAGGTCTCAAAT+AGG - tig0026810:20021-20040 None:intergenic 35.0%
ATTCAAACTACCGAATCTTC+AGG + tig0026810:20222-20241 Msa1431170:CDS 35.0%
TTCAAACTACCGAATCTTCA+GGG + tig0026810:20223-20242 Msa1431170:CDS 35.0%
TGAATGCCTTTCAAATGTGA+AGG + tig0026810:20296-20315 Msa1431170:CDS 35.0%
ACAATCTCTATTGCAATCCA+AGG - tig0026810:20322-20341 None:intergenic 35.0%
GATTCTGGACTAATATCAGA+TGG - tig0026810:20354-20373 None:intergenic 35.0%
AGCTTCTGAGTTCAATTCAA+TGG - tig0026810:20409-20428 None:intergenic 35.0%
CAAGAATTGAAGGTTTCTTC+TGG + tig0026810:20519-20538 Msa1431170:CDS 35.0%
ACTCTCAAATGTGAAGGATT+TGG + tig0026810:20605-20624 Msa1431170:CDS 35.0%
AGATTTGGAAGATACAGATG+CGG + tig0026810:21019-21038 Msa1431170:CDS 35.0%
!! TTCTGGGGTTTCTTAATTTG+TGG + tig0026810:21312-21331 Msa1431170:intron 35.0%
!! TCTGGGGTTTCTTAATTTGT+GGG + tig0026810:21313-21332 Msa1431170:intron 35.0%
!! TTCTTAATTTGTGGGAACCT+TGG + tig0026810:21321-21340 Msa1431170:intron 35.0%
GATTGTACAAATTCATGCAC+AGG + tig0026810:21571-21590 Msa1431170:intron 35.0%
GTTCACAATTTGAAGAACAG+TGG + tig0026810:21593-21612 Msa1431170:intron 35.0%
TGACTCCTGCTATAAATACA+TGG - tig0026810:21647-21666 None:intergenic 35.0%
! ATTATTTCTCTAGGTTTCCG+AGG - tig0026810:21762-21781 None:intergenic 35.0%
TTGTCTAAGCATGTGATTCA+TGG + tig0026810:21842-21861 Msa1431170:intron 35.0%
CAAGTTGTACGTGAATTGTT+TGG - tig0026810:22230-22249 None:intergenic 35.0%
CGTAGAAAAATCACATAGGT+AGG + tig0026810:22312-22331 Msa1431170:intron 35.0%
AAATATGTGAACTCATGGAG+AGG + tig0026810:22371-22390 Msa1431170:intron 35.0%
CTCACATACTCAACAAAATG+GGG - tig0026810:22427-22446 None:intergenic 35.0%
GCTCACATACTCAACAAAAT+GGG - tig0026810:22428-22447 None:intergenic 35.0%
AGCTCACATACTCAACAAAA+TGG - tig0026810:22429-22448 None:intergenic 35.0%
AATCTGCTATTCCGTGAATT+TGG - tig0026810:22475-22494 None:intergenic 35.0%
AAATTCACGGAATAGCAGAT+TGG + tig0026810:22474-22493 Msa1431170:three_prime_UTR 35.0%
AGATTTGGAAGATACAGATG+CGG + tig0026810:21019-21038 Msa1431170:CDS 35.0%
!! TCTAAATTTGGCTTGCACAT+TGG - tig0026810:22635-22654 None:intergenic 35.0%
GAGCGGTGAATATGAATTGA+AGG - tig0026810:16006-16025 None:intergenic 40.0%
TCCAATAGCGATTACAAGAG+CGG - tig0026810:16023-16042 None:intergenic 40.0%
ATATCGAACGCCTTTACAAC+GGG - tig0026810:16209-16228 None:intergenic 40.0%
!! GTTGTAAAGGCGTTCGATAT+TGG + tig0026810:16209-16228 Msa1431170:CDS 40.0%
! CGGTGCCAATGTATTTAACT+CGG + tig0026810:16902-16921 Msa1431170:CDS 40.0%
TGGAGCCGAGTTAAATACAT+TGG - tig0026810:16910-16929 None:intergenic 40.0%
GTATTTAACTCGGCTCCAAA+TGG + tig0026810:16912-16931 Msa1431170:CDS 40.0%
ATTTAACTCGGCTCCAAATG+GGG + tig0026810:16914-16933 Msa1431170:CDS 40.0%
GGCAACTAATGGTGTGTTTA+AGG + tig0026810:16935-16954 Msa1431170:CDS 40.0%
AGGATCGAATTTGATTGCAC+TGG + tig0026810:16977-16996 Msa1431170:CDS 40.0%
! TAAGATGTTTTACTGCCTCG+AGG + tig0026810:17134-17153 Msa1431170:intron 40.0%
TCACTTAAGTGTGTGCTCTT+TGG - tig0026810:17167-17186 None:intergenic 40.0%
! CTTTCTAATCATGCTGCTTG+GGG - tig0026810:17351-17370 None:intergenic 40.0%
GGAAAACCTTGTCAGTTCAA+GGG - tig0026810:17439-17458 None:intergenic 40.0%
! CAGAAACCTCATGTTGGTTA+AGG - tig0026810:17481-17500 None:intergenic 40.0%
ATGAGGTTTCTGACCCTTTA+TGG + tig0026810:17489-17508 Msa1431170:intron 40.0%
ACTATTTAACTGGGACAAGC+CGG + tig0026810:17640-17659 Msa1431170:CDS 40.0%
GACTCTTGAATTGTGGAAAC+AGG + tig0026810:17678-17697 Msa1431170:CDS 40.0%
GCTAAAGTTCGATCATGAGA+AGG - tig0026810:17709-17728 None:intergenic 40.0%
! AACTGAGATATGAGGGTACA+TGG + tig0026810:17751-17770 Msa1431170:intron 40.0%
! CCTAAAGTACCACCGATATT+AGG - tig0026810:18081-18100 None:intergenic 40.0%
CCTAATATCGGTGGTACTTT+AGG + tig0026810:18078-18097 Msa1431170:CDS 40.0%
! ATCGGTGGTACTTTAGGTTA+TGG + tig0026810:18084-18103 Msa1431170:CDS 40.0%
GTTTGCCTTGATGAATTTGG+TGG + tig0026810:18291-18310 Msa1431170:CDS 40.0%
TTGTCTCCTGAAGGTTAGAA+GGG - tig0026810:18329-18348 None:intergenic 40.0%
GATGTCTAACCTCAGATTGA+AGG - tig0026810:18380-18399 None:intergenic 40.0%
GCTAAAGGTTATGTTCTCCA+GGG + tig0026810:18478-18497 Msa1431170:intron 40.0%
CCAATTCCCTTTAATAACCC+TGG - tig0026810:18498-18517 None:intergenic 40.0%
CCAGGGTTATTAAAGGGAAT+TGG + tig0026810:18495-18514 Msa1431170:intron 40.0%
ACTGTTAAAGAGTGGCTTGA+TGG + tig0026810:18826-18845 Msa1431170:CDS 40.0%
CTGTTAAAGAGTGGCTTGAT+GGG + tig0026810:18827-18846 Msa1431170:CDS 40.0%
TGTTAAAGAGTGGCTTGATG+GGG + tig0026810:18828-18847 Msa1431170:CDS 40.0%
! TTGTTTGGAACTTTGAGTGG+TGG + tig0026810:18973-18992 Msa1431170:intron 40.0%
! TCAGACCTGGAATCTTTTCA+AGG - tig0026810:19159-19178 None:intergenic 40.0%
! GGGCTAAGATTTAAAGTCTC+AGG - tig0026810:19487-19506 None:intergenic 40.0%
TCTGCTACATCAAGGATTTC+AGG + tig0026810:19605-19624 Msa1431170:CDS 40.0%
CTGCTACATCAAGGATTTCA+GGG + tig0026810:19606-19625 Msa1431170:CDS 40.0%
TGCTACATCAAGGATTTCAG+GGG + tig0026810:19607-19626 Msa1431170:CDS 40.0%
ATTTCAGGGGAAACTGGTAT+AGG + tig0026810:19620-19639 Msa1431170:CDS 40.0%
!! CATTTCTAAGGTTGCTTGTG+TGG + tig0026810:19756-19775 Msa1431170:intron 40.0%
TAAGGTTGCTTGTGTGGAAT+TGG + tig0026810:19762-19781 Msa1431170:intron 40.0%
GAATATATCACGTTGGCAAG+GGG - tig0026810:19871-19890 None:intergenic 40.0%
CTGAATATATCACGTTGGCA+AGG - tig0026810:19873-19892 None:intergenic 40.0%
GCCAATTACTCTGAGTGAAA+TGG + tig0026810:20142-20161 Msa1431170:intron 40.0%
GCCATTTCACTCAGAGTAAT+TGG - tig0026810:20146-20165 None:intergenic 40.0%
!!! TTCTTGTTTTGATCCTGGAC+AGG + tig0026810:20172-20191 Msa1431170:intron 40.0%
GTTTGAATTTGAAGGCCTGA+TGG - tig0026810:20210-20229 None:intergenic 40.0%
GAATGTAAAAGAGCGAACAG+TGG + tig0026810:20245-20264 Msa1431170:CDS 40.0%
GGATTGCAATAGAGATTGTG+AGG + tig0026810:20323-20342 Msa1431170:CDS 40.0%
CCAGAAGAAACCTTTGATTC+TGG - tig0026810:20369-20388 None:intergenic 40.0%
CCAGAATCAAAGGTTTCTTC+TGG + tig0026810:20366-20385 Msa1431170:CDS 40.0%
! ACTCTCAAATGTGAAGGTGT+TGG + tig0026810:20452-20471 Msa1431170:CDS 40.0%
TTCGGAATTCAATGGAATGG+AGG - tig0026810:20559-20578 None:intergenic 40.0%
AGCTTCGGAATTCAATGGAA+TGG - tig0026810:20562-20581 None:intergenic 40.0%
! CGTTTAGCTTCGGAATTCAA+TGG - tig0026810:20567-20586 None:intergenic 40.0%
CCAGAATTGAAGGTTTCATC+CGG + tig0026810:20669-20688 Msa1431170:CDS 40.0%
AGACCTATAGAAGAGACTTC+AGG + tig0026810:20873-20892 Msa1431170:CDS 40.0%
AGATCAAGATGATACTGGTG+TGG + tig0026810:20905-20924 Msa1431170:CDS 40.0%
TCATTTGGTAAACCTGGAGA+AGG - tig0026810:20942-20961 None:intergenic 40.0%
TCGAAATGTGGAGGAAGATT+TGG + tig0026810:21004-21023 Msa1431170:CDS 40.0%
GCTAACGACGATGCATATTA+TGG + tig0026810:21062-21081 Msa1431170:CDS 40.0%
GACGATGCATATTATGGCAA+TGG + tig0026810:21068-21087 Msa1431170:CDS 40.0%
! GATGCTGGTACTCTATTTTC+CGG + tig0026810:21128-21147 Msa1431170:CDS 40.0%
! TTTCCTCTGTCCTTTTCTGT+GGG - tig0026810:21167-21186 None:intergenic 40.0%
! ATTTCCTCTGTCCTTTTCTG+TGG - tig0026810:21168-21187 None:intergenic 40.0%
ACAGAAAAGGACAGAGGAAA+TGG + tig0026810:21167-21186 Msa1431170:CDS 40.0%
TATATCCCATCATCGGAAAG+AGG + tig0026810:21268-21287 Msa1431170:intron 40.0%
GTACAGAATGAAGGGCAATA+AGG - tig0026810:21418-21437 None:intergenic 40.0%
! AGCTAACTTGTCAACACACA+TGG + tig0026810:21722-21741 Msa1431170:intron 40.0%
! CTGAGCGTCATTATTTCTCT+AGG - tig0026810:21771-21790 None:intergenic 40.0%
CTAGAGAAATAATGACGCTC+AGG + tig0026810:21769-21788 Msa1431170:intron 40.0%
GGTGATTAAGTCGGAAATTC+AGG + tig0026810:22015-22034 Msa1431170:intron 40.0%
! CCTATGTGATTTTTCTACGG+CGG - tig0026810:22311-22330 None:intergenic 40.0%
TAGCTTAACCAGTGCAGATT+TGG + tig0026810:22530-22549 Msa1431170:three_prime_UTR 40.0%
TGTATCTTCCAAATCTGCAC+TGG - tig0026810:22541-22560 None:intergenic 40.0%
GCTAACGACGATGCATATTA+TGG + tig0026810:21062-21081 Msa1431170:CDS 40.0%
GACGATGCATATTATGGCAA+TGG + tig0026810:21068-21087 Msa1431170:CDS 40.0%
ACGTAGATGCTTGTAATCGG+TGG + tig0026810:15956-15975 Msa1431170:exon 45.0%
TTGTAATCGGTGGTGTATCG+TGG + tig0026810:15966-15985 Msa1431170:CDS 45.0%
TGTAATCGGTGGTGTATCGT+GGG + tig0026810:15967-15986 Msa1431170:CDS 45.0%
ACCGCTCTTGTAATCGCTAT+TGG + tig0026810:16019-16038 Msa1431170:CDS 45.0%
GAAGTCGACGCTAATTTCGA+AGG + tig0026810:16082-16101 Msa1431170:CDS 45.0%
AGTTAAGAACACCGGGCATT+GGG - tig0026810:16135-16154 None:intergenic 45.0%
TCATCGGAGTTAAGAACACC+GGG - tig0026810:16142-16161 None:intergenic 45.0%
CTCATCGGAGTTAAGAACAC+CGG - tig0026810:16143-16162 None:intergenic 45.0%
AACAGCACAAACAGGCTCAT+CGG - tig0026810:16158-16177 None:intergenic 45.0%
!! TTTACAACGGGAGCACTTCT+TGG - tig0026810:16197-16216 None:intergenic 45.0%
!! AAGAAGTGCTCCCGTTGTAA+AGG + tig0026810:16196-16215 Msa1431170:CDS 45.0%
TTTGGCTGTGTGTGTTGTGT+TGG + tig0026810:16808-16827 Msa1431170:intron 45.0%
CTGTTGACATTCTGTTGAGC+TGG - tig0026810:16838-16857 None:intergenic 45.0%
CAGAATGTCAACAGTCGCAT+TGG + tig0026810:16844-16863 Msa1431170:CDS 45.0%
CAACAGTCGCATTGGAATTC+CGG + tig0026810:16852-16871 Msa1431170:CDS 45.0%
AACAGTCGCATTGGAATTCC+GGG + tig0026810:16853-16872 Msa1431170:CDS 45.0%
ACACCATTAGTTGCCCCATT+TGG - tig0026810:16930-16949 None:intergenic 45.0%
! TGTTTAAGGCTTCTGCTGCT+GGG + tig0026810:16949-16968 Msa1431170:CDS 45.0%
! TTGATTGCACTGGTACCTAG+TGG + tig0026810:16987-17006 Msa1431170:CDS 45.0%
TTTAGGCTTCTTGATAGGCC+TGG - tig0026810:17024-17043 None:intergenic 45.0%
CACTTCACCTTCGACAACAA+GGG - tig0026810:17100-17119 None:intergenic 45.0%
AAACCTTGTCAGTTCAAGGG+AGG - tig0026810:17436-17455 None:intergenic 45.0%
GGGAAAACCTTGTCAGTTCA+AGG - tig0026810:17440-17459 None:intergenic 45.0%
! GAACTGACAAGGTTTTCCCT+AGG + tig0026810:17441-17460 Msa1431170:intron 45.0%
AAGGGTCAGAAACCTCATGT+TGG - tig0026810:17487-17506 None:intergenic 45.0%
CCAAGGCAAGGAACCATAAA+GGG - tig0026810:17505-17524 None:intergenic 45.0%
ACCAAGGCAAGGAACCATAA+AGG - tig0026810:17506-17525 None:intergenic 45.0%
TAGACAAAGTCACCAAGGCA+AGG - tig0026810:17517-17536 None:intergenic 45.0%
CTATTTAACTGGGACAAGCC+GGG + tig0026810:17641-17660 Msa1431170:CDS 45.0%
CAATTCAAGAGTCCACAAGG+AGG - tig0026810:17671-17690 None:intergenic 45.0%
CCACAATTCAAGAGTCCACA+AGG - tig0026810:17674-17693 None:intergenic 45.0%
CCTTGTGGACTCTTGAATTG+TGG + tig0026810:17671-17690 Msa1431170:CDS 45.0%
TCCAACAAGTAGGCAACAAG+CGG - tig0026810:17847-17866 None:intergenic 45.0%
! TGTTGCCTACTTGTTGGAGA+AGG + tig0026810:17849-17868 Msa1431170:CDS 45.0%
! GTTGCCTACTTGTTGGAGAA+GGG + tig0026810:17850-17869 Msa1431170:CDS 45.0%
AAGAGCAAGGCTAAGTTCAC+AGG + tig0026810:18023-18042 Msa1431170:CDS 45.0%
TCTCGTTTGCCTAATATCGG+TGG + tig0026810:18069-18088 Msa1431170:CDS 45.0%
GTTGTCTCCTGAAGGTTAGA+AGG - tig0026810:18330-18349 None:intergenic 45.0%
! GGATAATGGTTGTCTCCTGA+AGG - tig0026810:18338-18357 None:intergenic 45.0%
GGCTAAAGGTTATGTTCTCC+AGG + tig0026810:18477-18496 Msa1431170:intron 45.0%
ATCTAGACATTCCTCCAACG+AGG - tig0026810:18800-18819 None:intergenic 45.0%
! ATGTTATGCTGCTGTTTGGC+AGG + tig0026810:19066-19085 Msa1431170:intron 45.0%
CAGGTGTCAGGACTATGTAA+AGG + tig0026810:19085-19104 Msa1431170:intron 45.0%
GTCAGGACTATGTAAAGGCA+TGG + tig0026810:19090-19109 Msa1431170:CDS 45.0%
GGATGTTGTACATGCAGAGT+GGG + tig0026810:19428-19447 Msa1431170:intron 45.0%
CTCCAGCTTCACTCATGTAA+GGG - tig0026810:19507-19526 None:intergenic 45.0%
TCTCCAGCTTCACTCATGTA+AGG - tig0026810:19508-19527 None:intergenic 45.0%
TACATGAGTGAAGCTGGAGA+TGG + tig0026810:19508-19527 Msa1431170:CDS 45.0%
TCAAGGATTTCAGGGGAAAC+TGG + tig0026810:19614-19633 Msa1431170:CDS 45.0%
! TTCCACCTATTTGAGACCTC+TGG + tig0026810:20013-20032 Msa1431170:intron 45.0%
AACCAGAGGTCTCAAATAGG+TGG - tig0026810:20018-20037 None:intergenic 45.0%
AATTTGAAGGCCTGATGGTC+GGG - tig0026810:20205-20224 None:intergenic 45.0%
GAATTTGAAGGCCTGATGGT+CGG - tig0026810:20206-20225 None:intergenic 45.0%
AAAAGAGCGAACAGTGGAAG+TGG + tig0026810:20251-20270 Msa1431170:CDS 45.0%
!! TCAGCTTGTTCAGTTTTGCC+AGG - tig0026810:20279-20298 None:intergenic 45.0%
CCAAGGCCTTCACATTTGAA+AGG - tig0026810:20305-20324 None:intergenic 45.0%
CCTTTCAAATGTGAAGGCCT+TGG + tig0026810:20302-20321 Msa1431170:CDS 45.0%
AGCTAAAAGAGAGCAGTCTG+AGG + tig0026810:20425-20444 Msa1431170:CDS 45.0%
GGACACACTCTCAAATGTGA+AGG + tig0026810:20446-20465 Msa1431170:CDS 45.0%
! AGACTGCTCTCGTTTAGCTT+CGG - tig0026810:20577-20596 None:intergenic 45.0%
GGACACACTCTCAAATGTGA+AGG + tig0026810:20446-20465 Msa1431170:CDS 45.0%
!! AAGGATTTGGCTTGCAGTAG+AGG + tig0026810:20618-20637 Msa1431170:CDS 45.0%
CCGGATGAAACCTTCAATTC+TGG - tig0026810:20672-20691 None:intergenic 45.0%
AGAAGACTCGTAATCGTAGC+CGG - tig0026810:20691-20710 None:intergenic 45.0%
CAGCCTGAAGTCTCTTCTAT+AGG - tig0026810:20879-20898 None:intergenic 45.0%
GCGCAAGATCAAGATGATAC+TGG + tig0026810:20900-20919 Msa1431170:CDS 45.0%
AAGATGATACTGGTGTGGCT+GGG + tig0026810:20910-20929 Msa1431170:CDS 45.0%
CTTCATGTGGAGTAGCAGAT+TGG - tig0026810:21109-21128 None:intergenic 45.0%
! AGAGTACCAGCATCTTCATG+TGG - tig0026810:21122-21141 None:intergenic 45.0%
TGCTTCCTATCCCACAGAAA+AGG + tig0026810:21154-21173 Msa1431170:CDS 45.0%
! TCTGTCCTTTTCTGTGGGAT+AGG - tig0026810:21162-21181 None:intergenic 45.0%
TATCCCACAGAAAAGGACAG+AGG + tig0026810:21161-21180 Msa1431170:CDS 45.0%
ATGAAGGGCAATAAGGACCA+AGG - tig0026810:21411-21430 None:intergenic 45.0%
GTTATAGCATGCATGAGCTG+TGG - tig0026810:22048-22067 None:intergenic 45.0%
CCGCCGTAGAAAAATCACAT+AGG + tig0026810:22308-22327 Msa1431170:intron 45.0%
GTGAACTCATGGAGAGGAAT+AGG + tig0026810:22377-22396 Msa1431170:intron 45.0%
! GTTAAGAACACCGGGCATTG+GGG - tig0026810:16134-16153 None:intergenic 50.0%
GAGTTAAGAACACCGGGCAT+TGG - tig0026810:16136-16155 None:intergenic 50.0%
GAAGCGCAAACAGCACAAAC+AGG - tig0026810:16166-16185 None:intergenic 50.0%
GCTCCAAATGGGGCAACTAA+TGG + tig0026810:16924-16943 Msa1431170:CDS 50.0%
! GTGTTTAAGGCTTCTGCTGC+TGG + tig0026810:16948-16967 Msa1431170:CDS 50.0%
! GTTTAAGGCTTCTGCTGCTG+GGG + tig0026810:16950-16969 Msa1431170:CDS 50.0%
! TTTAAGGCTTCTGCTGCTGG+GGG + tig0026810:16951-16970 Msa1431170:CDS 50.0%
! GCACTGGTACCTAGTGGTTA+CGG + tig0026810:16993-17012 Msa1431170:CDS 50.0%
!! CTGGAAGTACCGTAACCACT+AGG - tig0026810:17005-17024 None:intergenic 50.0%
CTAGTGGTTACGGTACTTCC+AGG + tig0026810:17003-17022 Msa1431170:CDS 50.0%
GCACTTCACCTTCGACAACA+AGG - tig0026810:17101-17120 None:intergenic 50.0%
GAAGGTGAAGTGCATCCTTG+AGG + tig0026810:17108-17127 Msa1431170:intron 50.0%
ATGCCTCCCTTGAACTGACA+AGG + tig0026810:17430-17449 Msa1431170:intron 50.0%
GCAGCTCCTTAACCAACATG+AGG + tig0026810:17472-17491 Msa1431170:intron 50.0%
CCCTTTATGGTTCCTTGCCT+TGG + tig0026810:17502-17521 Msa1431170:intron 50.0%
AGTCCACAAGGAGGAAATCC+CGG - tig0026810:17662-17681 None:intergenic 50.0%
AGGATGCTCACGAGTTCATG+AGG + tig0026810:18115-18134 Msa1431170:CDS 50.0%
AGCTGTCCCTTCTAACCTTC+AGG + tig0026810:18320-18339 Msa1431170:CDS 50.0%
GGCGACCACCAAAAATGTGT+TGG - tig0026810:18359-18378 None:intergenic 50.0%
GGGATGTTGTACATGCAGAG+TGG + tig0026810:19427-19446 Msa1431170:intron 50.0%
TGTTGTACATGCAGAGTGGG+AGG + tig0026810:19431-19450 Msa1431170:intron 50.0%
TACATGCAGAGTGGGAGGTT+TGG + tig0026810:19436-19455 Msa1431170:intron 50.0%
AGCCCTTACATGAGTGAAGC+TGG + tig0026810:19502-19521 Msa1431170:CDS 50.0%
GGTTGCTTGTGTGGAATTGG+AGG + tig0026810:19765-19784 Msa1431170:intron 50.0%
TGCTTGTGTGGAATTGGAGG+AGG + tig0026810:19768-19787 Msa1431170:CDS 50.0%
GGCTTGCAGTAGAGATTGTG+AGG + tig0026810:20473-20492 Msa1431170:CDS 50.0%
AGCTAAACGAGAGCAGTCTG+CGG + tig0026810:20578-20597 Msa1431170:CDS 50.0%
CAAGATGATACTGGTGTGGC+TGG + tig0026810:20909-20928 Msa1431170:CDS 50.0%
GCTACTCCACATGAAGATGC+TGG + tig0026810:21113-21132 Msa1431170:CDS 50.0%
TGTGGGATAGGAAGCAACAC+CGG - tig0026810:21150-21169 None:intergenic 50.0%
ATCCCATCATCGGAAAGAGG+TGG + tig0026810:21271-21290 Msa1431170:intron 50.0%
CACCACCTCTTTCCGATGAT+GGG - tig0026810:21276-21295 None:intergenic 50.0%
TCACCACCTCTTTCCGATGA+TGG - tig0026810:21277-21296 None:intergenic 50.0%
ATCGGAAAGAGGTGGTGAGT+TGG + tig0026810:21279-21298 Msa1431170:intron 50.0%
TCGGAAAGAGGTGGTGAGTT+GGG + tig0026810:21280-21299 Msa1431170:intron 50.0%
TGGTCGTGAACTCACTACCT+CGG + tig0026810:21742-21761 Msa1431170:intron 50.0%
ATTGGGGAGGTGGGAGAAGA+AGG - tig0026810:16118-16137 None:intergenic 55.0%
!! ACAACGGGAGCACTTCTTGG+TGG - tig0026810:16194-16213 None:intergenic 55.0%
CTCTTTGGCATCTCTCCTCG+AGG - tig0026810:17152-17171 None:intergenic 55.0%
! TCAAGGGAGGCATATGCGCT+TGG - tig0026810:17423-17442 None:intergenic 55.0%
! AGGTTTTCCCTAGGCACCAG+AGG + tig0026810:17450-17469 Msa1431170:intron 55.0%
GTTGGTTAAGGAGCTGCCTC+TGG - tig0026810:17469-17488 None:intergenic 55.0%
AAGCCGGGATTTCCTCCTTG+TGG + tig0026810:17656-17675 Msa1431170:CDS 55.0%
! GCCGCTTGTTGCCTACTTGT+TGG + tig0026810:17843-17862 Msa1431170:CDS 55.0%
GTGGCCCTTCTCCAACAAGT+AGG - tig0026810:17857-17876 None:intergenic 55.0%
TGGTGGTCGCCTTCAATCTG+AGG + tig0026810:18368-18387 Msa1431170:CDS 55.0%
TCATGGAGATGCTGCCTCGT+TGG + tig0026810:18783-18802 Msa1431170:CDS 55.0%
CGAACAGTGGAAGTGGAACC+TGG + tig0026810:20258-20277 Msa1431170:CDS 55.0%
GGCTTGCAGTAGAGGTTGTG+AGG + tig0026810:20626-20645 Msa1431170:CDS 55.0%
!! AAGAACACCGGGCATTGGGG+AGG - tig0026810:16131-16150 None:intergenic 60.0%
GCTTCTGCTGCTGGGGGTAA+AGG + tig0026810:16957-16976 Msa1431170:CDS 60.0%
TGGAGATGCTGCCTCGTTGG+AGG + tig0026810:18786-18805 Msa1431170:CDS 60.0%
! GCTGCTGTTTGGCAGGTGTC+AGG + tig0026810:19073-19092 Msa1431170:intron 60.0%
AGGTGTACTGCCCGACCATC+AGG + tig0026810:20192-20211 Msa1431170:intron 60.0%
! GCTGGGTCTTGTCCTTCTCC+AGG + tig0026810:20927-20946 Msa1431170:CDS 60.0%
TCTCCCACCTCCCCAATGCC+CGG + tig0026810:16121-16140 Msa1431170:CDS 65.0%
!! ACACCGGGCATTGGGGAGGT+GGG - tig0026810:16127-16146 None:intergenic 65.0%
!! AACACCGGGCATTGGGGAGG+TGG - tig0026810:16128-16147 None:intergenic 65.0%
GGAGCTGCCTCTGGTGCCTA+GGG - tig0026810:17460-17479 None:intergenic 65.0%
AGGAGCTGCCTCTGGTGCCT+AGG - tig0026810:17461-17480 None:intergenic 65.0%
GTCGGGCAGTACACCTGTCC+AGG - tig0026810:20188-20207 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0026810 gene 15796 22654 15796 ID=Msa1431170;Name=Msa1431170
tig0026810 mRNA 15796 22654 15796 ID=Msa1431170-mRNA-1;Parent=Msa1431170;Name=Msa1431170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=166|1|1|1|0.90|0.83|12|194|831
tig0026810 exon 15796 16230 15796 ID=Msa1431170-mRNA-1:exon:7434;Parent=Msa1431170-mRNA-1
tig0026810 exon 16839 17046 16839 ID=Msa1431170-mRNA-1:exon:7435;Parent=Msa1431170-mRNA-1
tig0026810 exon 17611 17699 17611 ID=Msa1431170-mRNA-1:exon:7436;Parent=Msa1431170-mRNA-1
tig0026810 exon 17801 17886 17801 ID=Msa1431170-mRNA-1:exon:7437;Parent=Msa1431170-mRNA-1
tig0026810 exon 17974 18136 17974 ID=Msa1431170-mRNA-1:exon:7438;Parent=Msa1431170-mRNA-1
tig0026810 exon 18266 18389 18266 ID=Msa1431170-mRNA-1:exon:7439;Parent=Msa1431170-mRNA-1
tig0026810 exon 18715 18872 18715 ID=Msa1431170-mRNA-1:exon:7440;Parent=Msa1431170-mRNA-1
tig0026810 exon 19088 19172 19088 ID=Msa1431170-mRNA-1:exon:7441;Parent=Msa1431170-mRNA-1
tig0026810 exon 19445 19657 19445 ID=Msa1431170-mRNA-1:exon:7442;Parent=Msa1431170-mRNA-1
tig0026810 exon 19766 19827 19766 ID=Msa1431170-mRNA-1:exon:7443;Parent=Msa1431170-mRNA-1
tig0026810 exon 20194 21243 20194 ID=Msa1431170-mRNA-1:exon:7444;Parent=Msa1431170-mRNA-1
tig0026810 exon 22472 22654 22472 ID=Msa1431170-mRNA-1:exon:7445;Parent=Msa1431170-mRNA-1
tig0026810 five_prime_UTR 15796 15961 15796 ID=Msa1431170-mRNA-1:five_prime_utr;Parent=Msa1431170-mRNA-1
tig0026810 CDS 15962 16230 15962 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 16839 17046 16839 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 17611 17699 17611 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 17801 17886 17801 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 17974 18136 17974 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 18266 18389 18266 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 18715 18872 18715 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 19088 19172 19088 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 19445 19657 19445 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 19766 19827 19766 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 CDS 20194 21232 20194 ID=Msa1431170-mRNA-1:cds;Parent=Msa1431170-mRNA-1
tig0026810 three_prime_UTR 21233 21243 21233 ID=Msa1431170-mRNA-1:three_prime_utr;Parent=Msa1431170-mRNA-1
tig0026810 three_prime_UTR 22472 22654 22472 ID=Msa1431170-mRNA-1:three_prime_utr;Parent=Msa1431170-mRNA-1
Gene Sequence

>Msa1431170

ATGCTTGTAATCGGTGGTGTATCGTGGGATCTCAATCGATTCCTTCAATTCATATTCACCGCTCTTGTAATCGCTATTGGATTGCACACTCTTGTCAAGAACACCGCTTCTAAATACTTCGAAGTCGACGCTAATTTCGAAGGAGATCATCATCCTTCTTCTCCCACCTCCCCAATGCCCGGTGTTCTTAACTCCGATGAGCCTGTTTGTGCTGTTTGCGCTTCTCATGCCACCAAGAAGTGCTCCCGTTGTAAAGGCGTTCGATATTGCTCAACAGAATGTCAACAGTCGCATTGGAATTCCGGGCATAAGAAAAAATGCAAAAGTAATAGCGGTGCCAATGTATTTAACTCGGCTCCAAATGGGGCAACTAATGGTGTGTTTAAGGCTTCTGCTGCTGGGGGTAAAGGATCGAATTTGATTGCACTGGTACCTAGTGGTTACGGTACTTCCAGGCCTATCAAGAAGCCTAAAGATGTTCTTTTTCCTTATGATGAATTTGTTAAACTATTTAACTGGGACAAGCCGGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGTTTTGCGAATGTGGTTCTTCAGTGTCTCTCATTCACAAAGCCGCTTGTTGCCTACTTGTTGGAGAAGGGCCACCGAAATGAATGCATTTGTAATGATTGGTGCTTTCTATGTGAGTTTGAAAGTCATGTTGAAAGAGCAAGGCTAAGTTCACAGGCGTTTTCTCCAATGAATATTCTATCTCGTTTGCCTAATATCGGTGGTACTTTAGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCAATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTTCTAACCTTCAGGAGACAACCATTATCCAACACATTTTTGGTGGTCGCCTTCAATCTGAGGTTATTTGCACAAAGTGTGATAAGACTTCAAATCAGTATGAAAGTATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCCTCGTTGGAGGAATGTCTAGATCAGTTTACTGTTAAAGAGTGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGTCAGGACTATGTAAAGGCATGGAAACGTCTTACTGTGAAATGTGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTCCAGAGTGGGAGGTTTGGAAAACTTAACAAAAGAGTAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTACATGAGTGAAGCTGGAGATGGATCTGATATCTATAATTTGTATGCTGTTGTAGTCCATATTGATATGTTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCAGGGGAAACTGGTATAGGATTGATGACTCAAAGGTTGCTTGTGTGGAATTGGAGGAGGTGCTTTCTCAGGGAGCATATATGCTGTTGTATAAAAGGTGTACTGCCCGACCATCAGGCCTTCAAATTCAAACTACCGAATCTTCAGGGAATGTAAAAGAGCGAACAGTGGAAGTGGAACCTGGCAAAACTGAACAAGCTGAATGCCTTTCAAATGTGAAGGCCTTGGATTGCAATAGAGATTGTGAGGTTTCACCATCTGATATTAGTCCAGAATCAAAGGTTTCTTCTGGTGATGAATACGAGTCTTCCATTGAATTGAACTCAGAAGCTAAAAGAGAGCAGTCTGAGGACACACTCTCAAATGTGAAGGTGTTGGCTTGCAGTAGAGATTGTGAGGTTTCACCATCTGATAATATTAGTCAAGAATTGAAGGTTTCTTCTGGTTATGAATATGAGTCCTCCATTCCATTGAATTCCGAAGCTAAACGAGAGCAGTCTGCGGACACACTCTCAAATGTGAAGGATTTGGCTTGCAGTAGAGGTTGTGAGGTTGTACCATCTGATATTAGTCCAGAATTGAAGGTTTCATCCGGCTACGATTACGAGTCTTCTGTTGAAGTGAACTCAGAAGCTAAAAGAGAGCAGTCTGACGCAGACATGATTGATGTTGAGTCAACTGATAATTGTAATGATATTTCTTATAGTGCTGTTGATGAATCATCTTATTTACCCATTTCTCATGTTGTTGAAGATTTGATTGATGTGGATATGGGAAGACCTATAGAAGAGACTTCAGGCTGTGCGCAAGATCAAGATGATACTGGTGTGGCTGGGTCTTGTCCTTCTCCAGGTTTACCAAATGATTTTTCTTTCTTGGATAAGCATTCTTCTGTTTCAATAGATTATCGAAATGTGGAGGAAGATTTGGAAGATACAGATGCGGTTAAATGCAAGTTGCTAACAGCTAACGACGATGCATATTATGGCAATGGATATGTTAGTGCAAACCAATCTGCTACTCCACATGAAGATGCTGGTACTCTATTTTCCGGTGTTGCTTCCTATCCCACAGAAAAGGACAGAGGAAATGGAATTAAGAAAGTGGAAATATCAGCGGATAAGTTAATAATGTAG
Protein sequence

>Msa1431170

MLVIGGVSWDLNRFLQFIFTALVIAIGLHTLVKNTASKYFEVDANFEGDHHPSSPTSPMPGVLNSDEPVCAVCASHATKKCSRCKGVRYCSTECQQSHWNSGHKKKCKSNSGANVFNSAPNGATNGVFKASAAGGKGSNLIALVPSGYGTSRPIKKPKDVLFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTKPLVAYLLEKGHRNECICNDWCFLCEFESHVERARLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPSNLQETTIIQHIFGGRLQSEVICTKCDKTSNQYESMMDLTVEIHGDAASLEECLDQFTVKEWLDGENMYKCEGCQDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRVAFPETLNLSPYMSEAGDGSDIYNLYAVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDSKVACVELEEVLSQGAYMLLYKRCTARPSGLQIQTTESSGNVKERTVEVEPGKTEQAECLSNVKALDCNRDCEVSPSDISPESKVSSGDEYESSIELNSEAKREQSEDTLSNVKVLACSRDCEVSPSDNISQELKVSSGYEYESSIPLNSEAKREQSADTLSNVKDLACSRGCEVVPSDISPELKVSSGYDYESSVEVNSEAKREQSDADMIDVESTDNCNDISYSAVDESSYLPISHVVEDLIDVDMGRPIEETSGCAQDQDDTGVAGSCPSPGLPNDFSFLDKHSSVSIDYRNVEEDLEDTDAVKCKLLTANDDAYYGNGYVSANQSATPHEDAGTLFSGVASYPTEKDRGNGIKKVEISADKLIM*