AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005620 MtrunA17_Chr1g0150541 95.433 832 36 2 1 831 1 831 0.0 1645
Msa0005620 MtrunA17_Chr2g0313171 52.011 373 176 2 121 491 403 774 8.21e-125 398
Msa0005620 MtrunA17_Chr5g0412381 53.371 356 160 3 162 515 405 756 2.09e-124 397
Msa0005620 MtrunA17_Chr5g0427301 51.852 378 177 3 136 510 497 872 1.34e-123 397
Msa0005620 MtrunA17_Chr3g0133061 52.925 359 168 1 136 494 539 896 2.45e-123 398
Msa0005620 MtrunA17_Chr4g0074041 40.705 312 171 7 181 486 92 395 1.14e-64 232
Msa0005620 MtrunA17_Chr2g0312901 36.524 397 236 10 179 566 20 409 2.96e-61 219
Msa0005620 MtrunA17_Chr6g0458441 37.855 317 176 11 177 486 123 425 5.12e-55 201
Msa0005620 MtrunA17_Chr6g0458421 36.741 313 185 8 177 486 25 327 1.61e-53 195
Msa0005620 MtrunA17_Chr6g0458431 36.593 317 180 10 177 486 90 392 1.38e-51 191
Msa0005620 MtrunA17_Chr5g0411271 31.707 369 215 9 139 486 97 449 1.01e-49 187
Msa0005620 MtrunA17_Chr8g0366721 31.935 310 182 9 182 486 213 498 1.21e-41 160
Msa0005620 MtrunA17_Chr8g0365831 32.288 319 183 12 182 486 165 464 9.34e-36 142
Msa0005620 MtrunA17_Chr3g0123951 30.408 319 184 8 182 470 24 334 9.83e-33 130
Msa0005620 MtrunA17_Chr8g0382161 29.467 319 187 9 182 470 24 334 1.35e-31 127
Msa0005620 MtrunA17_Chr1g0149991 28.161 348 198 11 182 484 182 522 2.37e-30 127
Msa0005620 MtrunA17_Chr4g0062561 30.449 312 185 9 182 486 254 540 4.16e-28 121
Msa0005620 MtrunA17_Chr4g0062561 29.043 303 185 10 199 492 577 858 1.97e-21 100
Msa0005620 MtrunA17_Chr1g0148321 27.647 340 209 11 142 467 67 383 3.28e-24 109
Msa0005620 MtrunA17_Chr2g0322211 37.255 153 90 3 339 488 714 863 3.62e-22 102
Msa0005620 MtrunA17_Chr4g0062491 26.471 306 191 11 221 512 35 320 2.82e-20 92.8
Msa0005620 MtrunA17_Chr3g0138791 27.090 299 186 10 180 467 106 383 4.39e-20 96.3
Msa0005620 MtrunA17_Chr4g0064671 26.016 246 126 7 291 484 2 243 1.60e-19 89.4
Msa0005620 MtrunA17_Chr1g0189101 35.714 168 96 5 339 502 762 921 2.08e-18 90.5
Msa0005620 MtrunA17_Chr7g0267641 27.935 247 152 9 262 494 710 944 1.90e-17 87.4
Msa0005620 MtrunA17_Chr7g0255591 29.245 212 141 6 282 487 693 901 6.27e-16 82.4
Msa0005620 MtrunA17_Chr3g0121291 37.121 132 62 4 373 486 941 1069 2.06e-14 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005620 AT2G24640.1 63.619 514 167 6 6 513 5 504 0.0 676
Msa0005620 AT4G31670.1 63.860 487 164 3 6 492 5 479 0.0 652
Msa0005620 AT2G24640.2 74.251 334 84 1 180 513 3 334 0.0 544
Msa0005620 AT1G17110.3 50.521 384 185 1 160 543 417 795 4.42e-128 406
Msa0005620 AT1G17110.1 50.521 384 185 1 160 543 417 795 4.42e-128 406
Msa0005620 AT1G17110.2 50.521 384 185 1 160 543 421 799 4.51e-128 407
Msa0005620 AT4G24560.1 50.575 348 170 2 161 508 523 868 4.61e-115 374
Msa0005620 AT5G65450.1 52.870 331 151 3 162 491 311 637 1.13e-108 350
Msa0005620 AT5G65450.2 52.870 331 151 3 162 491 330 656 3.47e-108 349
Msa0005620 AT5G57990.1 38.636 308 182 5 181 486 107 409 9.32e-63 227
Msa0005620 AT3G14400.1 37.791 344 191 8 170 499 13 347 1.52e-60 218
Msa0005620 AT5G46740.1 34.251 327 197 9 171 486 149 468 2.08e-44 172
Msa0005620 AT4G17895.1 32.911 316 192 10 182 490 177 479 2.23e-38 153
Msa0005620 AT5G46740.2 36.681 229 134 6 262 486 38 259 7.35e-34 137
Msa0005620 AT2G22310.1 29.430 316 190 8 182 470 24 333 4.09e-33 132
Msa0005620 AT4G39910.1 28.660 321 191 8 182 470 24 338 1.29e-31 127
Msa0005620 AT2G22310.3 28.383 303 184 8 195 470 5 301 1.93e-28 117
Msa0005620 AT2G22310.2 28.094 299 182 8 199 470 4 296 5.16e-27 113
Msa0005620 AT5G10790.2 27.596 366 197 12 182 489 49 404 1.14e-23 105
Msa0005620 AT5G10790.1 27.596 366 197 12 182 489 178 533 5.54e-23 104
Msa0005620 AT3G49600.2 26.000 300 187 10 180 467 105 381 3.47e-20 97.1
Msa0005620 AT3G49600.1 26.000 300 187 10 180 467 105 381 3.47e-20 97.1
Msa0005620 AT3G49600.3 26.000 300 187 10 180 467 105 381 3.67e-20 96.7
Msa0005620 AT5G22030.1 37.013 154 90 4 339 488 720 870 4.68e-20 96.3
Msa0005620 AT5G22030.2 37.013 154 90 4 339 488 762 912 5.16e-20 96.3
Msa0005620 AT4G10590.4 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0005620 AT4G10590.3 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0005620 AT4G10590.1 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0005620 AT4G10590.2 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0005620 AT4G10570.1 35.088 171 101 5 339 505 746 910 7.63e-18 89.4
Msa0005620 AT1G32850.1 34.194 155 95 4 339 489 731 882 1.79e-16 84.7
Msa0005620 AT1G04860.1 36.719 128 64 4 373 486 832 956 3.14e-15 80.9
Msa0005620 AT2G40930.1 32.704 159 99 5 333 486 760 915 4.78e-14 77.0
Msa0005620 AT2G40930.2 32.704 159 99 5 333 486 760 915 4.78e-14 77.0
Msa0005620 AT3G11910.3 24.611 321 192 14 177 477 196 486 1.04e-13 75.9
Msa0005620 AT3G11910.1 24.611 321 192 14 177 477 196 486 1.04e-13 75.9
Msa0005620 AT3G11910.4 24.611 321 192 14 177 477 195 485 1.08e-13 75.9
Msa0005620 AT3G11910.2 24.611 321 192 14 177 477 195 485 1.08e-13 75.9
Msa0005620 AT5G06600.3 25.077 323 188 15 177 477 197 487 1.12e-13 75.9
Msa0005620 AT5G06600.2 25.077 323 188 15 177 477 196 486 1.31e-13 75.5
Msa0005620 AT5G06600.1 25.077 323 188 15 177 477 197 487 1.32e-13 75.5
Msa0005620 AT2G32780.1 37.121 132 62 5 373 486 954 1082 2.27e-13 74.7

Find 214 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAAATTGTGTTCTAAATT+TGG 0.084163 1_1:-8294554 None:intergenic
AAGGCAATTGTAAGAATATT+TGG 0.129076 1_1:-8291048 None:intergenic
GGCAACTAATGGTGTGTTTA+AGG 0.166498 1_1:+8288846 Msa0005620:CDS
CCTAATATCGGTGGTACTTT+AGG 0.209819 1_1:+8289989 Msa0005620:CDS
CTACGTTGAATTGTGATTCT+AGG 0.218939 1_1:-8287850 None:intergenic
AATTTGTTAAACTATTTAAC+TGG 0.221244 1_1:+8289541 Msa0005620:CDS
GTGTTTAAGGCTTCTGCTGC+TGG 0.231659 1_1:+8288859 Msa0005620:CDS
TAAAAGAAAATTACATCTTT+AGG 0.232918 1_1:-8288949 None:intergenic
TCTGCTACATCAAGGATTTC+AGG 0.234092 1_1:+8291517 Msa0005620:CDS
TCTAATTGTGATTGTGATTT+GGG 0.238449 1_1:+8287780 Msa0005620:five_prime_UTR
AATCTGCTATTCCGTGAATT+TGG 0.239552 1_1:-8294382 None:intergenic
AGATTTGATTGATGTGGATA+TGG 0.257969 1_1:+8292760 Msa0005620:CDS
ACCGCTCTTGTAATCGCTAT+TGG 0.263025 1_1:+8287930 Msa0005620:CDS
TTTCTTCTGTTCTATAAATC+AGG 0.263651 1_1:-8287716 None:intergenic
CATATATGCTGTTGTATAAA+AGG 0.272790 1_1:+8291718 Msa0005620:CDS
CAACAGTCGCATTGGAATTC+CGG 0.278181 1_1:+8288763 Msa0005620:CDS
TCTGTTTGCCTTGATGAATT+TGG 0.280351 1_1:+8290199 Msa0005620:CDS
CCAGAAGAAACCTTTGATTC+TGG 0.284036 1_1:-8292278 None:intergenic
TTCTAATTGTGATTGTGATT+TGG 0.296544 1_1:+8287779 Msa0005620:five_prime_UTR
TAGCTTAACCAGTGCAGATT+TGG 0.296940 1_1:+8294440 Msa0005620:three_prime_UTR
TCGAAATGTGGAGGAAGATT+TGG 0.318936 1_1:+8292916 Msa0005620:CDS
AATTGCCTTGAAAAGATTCC+AGG 0.322192 1_1:+8291062 Msa0005620:CDS
CCTAAAGTACCACCGATATT+AGG 0.326433 1_1:-8289989 None:intergenic
ATCGGTGGTACTTTAGGTTA+TGG 0.331235 1_1:+8289995 Msa0005620:CDS
GCTAACGACGATGCATATTA+TGG 0.332647 1_1:+8292974 Msa0005620:CDS
GCTAACGACGATGCATATTA+TGG 0.332647 1_1:+8294498 Msa0005620:three_prime_UTR
CAAGAATTGAAGGTTTCTTC+TGG 0.335200 1_1:+8292431 Msa0005620:CDS
ATTCAAACTACCGAATCTTC+AGG 0.340313 1_1:+8292134 Msa0005620:CDS
ATCTTCAACAACATGAGAAA+TGG 0.349453 1_1:-8292741 None:intergenic
CCGGATGAAACCTTCAATTC+TGG 0.349556 1_1:-8292581 None:intergenic
CCTTTCAAATGTGAAGGCCT+TGG 0.352877 1_1:+8292214 Msa0005620:CDS
TTTCAGGCATTTGTAATGAT+TGG 0.354105 1_1:+8289879 Msa0005620:intron
TTAAGAAATTACATTCATTT+CGG 0.357403 1_1:-8289787 None:intergenic
AGCTGTCCCTTCTAACCTTC+AGG 0.361138 1_1:+8290231 Msa0005620:CDS
TTTACAACGGGAGCACTTCT+TGG 0.364394 1_1:-8288105 None:intergenic
TAAGGTTGCTTGTGTGGAAT+TGG 0.364996 1_1:+8291674 Msa0005620:intron
CGTTTAGCTTCGGAATTCAA+TGG 0.369885 1_1:-8292476 None:intergenic
AGTTAAGAACACCGGGCATT+GGG 0.372286 1_1:-8288043 None:intergenic
GCCGCTTGTTGCCTACTTGT+TGG 0.374111 1_1:+8289754 Msa0005620:CDS
GTTGTAAAGGCGTTCGATAT+TGG 0.375635 1_1:+8288120 Msa0005620:CDS
ACTCTCAAATGTGAAGGATT+TGG 0.377040 1_1:+8292517 Msa0005620:CDS
ATTGGAGGAGGTGCTTTCTC+AGG 0.377052 1_1:+8291692 Msa0005620:CDS
GGGCTAAGATTTAAAGTCTC+AGG 0.378765 1_1:-8291396 None:intergenic
AACAGTCGCATTGGAATTCC+GGG 0.387892 1_1:+8288764 Msa0005620:CDS
ACATCTTTAGGCTTCTTGAT+AGG 0.387941 1_1:-8288937 None:intergenic
TGTTTAAGGCTTCTGCTGCT+GGG 0.390727 1_1:+8288860 Msa0005620:CDS
ACACCATTAGTTGCCCCATT+TGG 0.392340 1_1:-8288838 None:intergenic
AAGCATTTAACATATCAATA+TGG 0.393717 1_1:-8291476 None:intergenic
CTATCTCGTTTGCCTAATAT+CGG 0.393985 1_1:+8289977 Msa0005620:CDS
GCTGGGTCTTGTCCTTCTCC+AGG 0.397149 1_1:+8292839 Msa0005620:CDS
CCAGAATCAAAGGTTTCTTC+TGG 0.404756 1_1:+8292278 Msa0005620:CDS
ACAGAAAAGGACAGAGGAAA+TGG 0.411132 1_1:+8293079 Msa0005620:CDS
TCAAGGATTTCAGGGGAAAC+TGG 0.412917 1_1:+8291526 Msa0005620:CDS
ACTGTTAAAGAGTGGCTTGA+TGG 0.417050 1_1:+8290737 Msa0005620:CDS
AGCTTCTGAGTTCAATTCAA+TGG 0.418219 1_1:-8292318 None:intergenic
CAGCCTGAAGTCTCTTCTAT+AGG 0.419780 1_1:-8292788 None:intergenic
ATTGGGGAGGTGGGAGAAGA+AGG 0.422557 1_1:-8288026 None:intergenic
GCTGCTGTTTGGCAGGTGTC+AGG 0.425121 1_1:+8290984 Msa0005620:intron
ATATCGAACGCCTTTACAAC+GGG 0.425342 1_1:-8288117 None:intergenic
GTATTTAACTCGGCTCCAAA+TGG 0.425765 1_1:+8288823 Msa0005620:CDS
ATTTCAGGGGAAACTGGTAT+AGG 0.426965 1_1:+8291532 Msa0005620:CDS
TACATGCAGAGTGGGAGGTT+TGG 0.427282 1_1:+8291348 Msa0005620:intron
ATTCGGTAGTTTGAATTTGA+AGG 0.428268 1_1:-8292127 None:intergenic
CGAACAGTGGAAGTGGAACC+TGG 0.429811 1_1:+8292170 Msa0005620:CDS
CTAGTGGTTACGGTACTTCC+AGG 0.430005 1_1:+8288914 Msa0005620:CDS
AGTTTAACAAATTCATCATA+AGG 0.431172 1_1:-8289531 None:intergenic
AACACCGGGCATTGGGGAGG+TGG 0.435518 1_1:-8288036 None:intergenic
TCTCCAGCTTCACTCATGTA+AGG 0.436136 1_1:-8291417 None:intergenic
GCTCCAAATGGGGCAACTAA+TGG 0.437343 1_1:+8288835 Msa0005620:CDS
AGGTGTACTGCCCGACCATC+AGG 0.437934 1_1:+8292104 Msa0005620:intron
TATTTAACTCGGCTCCAAAT+GGG 0.439240 1_1:+8288824 Msa0005620:CDS
CATTTCTAAGGTTGCTTGTG+TGG 0.445065 1_1:+8291668 Msa0005620:intron
GACTCTTGAATTGTGGAAAC+AGG 0.446722 1_1:+8289589 Msa0005620:CDS
CTTCATGTGGAGTAGCAGAT+TGG 0.451994 1_1:-8293018 None:intergenic
TACGTTGAATTGTGATTCTA+GGG 0.454479 1_1:-8287849 None:intergenic
CTGTTAAAGAGTGGCTTGAT+GGG 0.454725 1_1:+8290738 Msa0005620:CDS
AATTTGAAGGCCTGATGGTC+GGG 0.458437 1_1:-8292114 None:intergenic
TCTCCCACCTCCCCAATGCC+CGG 0.458535 1_1:+8288032 Msa0005620:CDS
TGTTGCCTACTTGTTGGAGA+AGG 0.460863 1_1:+8289760 Msa0005620:CDS
GTTGTCTCCTGAAGGTTAGA+AGG 0.461570 1_1:-8290238 None:intergenic
TGATATTAGTCCAGAATTGA+AGG 0.462584 1_1:+8292571 Msa0005620:CDS
TCTTCAACAACATGAGAAAT+GGG 0.467804 1_1:-8292740 None:intergenic
GACTTGACAGTTGAAATTCA+TGG 0.470241 1_1:+8290677 Msa0005620:CDS
CAAGATGATACTGGTGTGGC+TGG 0.472932 1_1:+8292821 Msa0005620:CDS
CTGCTACATCAAGGATTTCA+GGG 0.473698 1_1:+8291518 Msa0005620:CDS
TAATATTAGTCAAGAATTGA+AGG 0.477301 1_1:+8292421 Msa0005620:CDS
GATGTCTAACCTCAGATTGA+AGG 0.479128 1_1:-8290288 None:intergenic
TCAACGTAGATGCTTGTAAT+CGG 0.479652 1_1:+8287864 Msa0005620:exon
AAATTCACGGAATAGCAGAT+TGG 0.485471 1_1:+8294384 Msa0005620:three_prime_UTR
GAGCGGTGAATATGAATTGA+AGG 0.486940 1_1:-8287914 None:intergenic
AGACCTATAGAAGAGACTTC+AGG 0.487841 1_1:+8292785 Msa0005620:CDS
CAGAATGTCAACAGTCGCAT+TGG 0.488151 1_1:+8288755 Msa0005620:CDS
ACTATTTAACTGGGACAAGC+CGG 0.489316 1_1:+8289551 Msa0005620:CDS
GAGTTAAGAACACCGGGCAT+TGG 0.490369 1_1:-8288044 None:intergenic
AGACTGCTCTCGTTTAGCTT+CGG 0.490718 1_1:-8292486 None:intergenic
TTCAAACTACCGAATCTTCA+GGG 0.492835 1_1:+8292135 Msa0005620:CDS
AGCTTCGGAATTCAATGGAA+TGG 0.494486 1_1:-8292471 None:intergenic
GTTGCCTACTTGTTGGAGAA+GGG 0.495969 1_1:+8289761 Msa0005620:CDS
TGGAGATGCTGCCTCGTTGG+AGG 0.497630 1_1:+8290697 Msa0005620:CDS
TTTAGGCTTCTTGATAGGCC+TGG 0.501943 1_1:-8288932 None:intergenic
GAAGCGCAAACAGCACAAAC+AGG 0.506304 1_1:-8288074 None:intergenic
AGCCCTTACATGAGTGAAGC+TGG 0.509985 1_1:+8291414 Msa0005620:CDS
GCGCAAGATCAAGATGATAC+TGG 0.513020 1_1:+8292812 Msa0005620:CDS
GGTTGCTTGTGTGGAATTGG+AGG 0.513299 1_1:+8291677 Msa0005620:intron
TCTAAATTTGGCTTGCACAT+TGG 0.514422 1_1:-8294542 None:intergenic
AGGAAATGGAATTAAGAAAG+TGG 0.515604 1_1:+8293093 Msa0005620:CDS
GTTTAAGGCTTCTGCTGCTG+GGG 0.516084 1_1:+8288861 Msa0005620:CDS
CCAGAATTGAAGGTTTCATC+CGG 0.517764 1_1:+8292581 Msa0005620:CDS
AGAAATTACATTCATTTCGG+TGG 0.518618 1_1:-8289784 None:intergenic
AAACGAGATAGAATATTCAT+TGG 0.521393 1_1:-8289965 None:intergenic
CCTTGTGGACTCTTGAATTG+TGG 0.523172 1_1:+8289582 Msa0005620:CDS
TCATGGAGATGCTGCCTCGT+TGG 0.523431 1_1:+8290694 Msa0005620:CDS
GATTTGATTGATGTGGATAT+GGG 0.526237 1_1:+8292761 Msa0005620:CDS
AAAAGAGCGAACAGTGGAAG+TGG 0.526891 1_1:+8292163 Msa0005620:CDS
AAGAAGTGCTCCCGTTGTAA+AGG 0.526930 1_1:+8288107 Msa0005620:CDS
GAAAATATGTATAAATGTGA+GGG 0.527072 1_1:+8290761 Msa0005620:CDS
GGCTAAGATTTAAAGTCTCA+GGG 0.529508 1_1:-8291395 None:intergenic
TGCTTCCTATCCCACAGAAA+AGG 0.530729 1_1:+8293066 Msa0005620:CDS
TGGTGGTCGCCTTCAATCTG+AGG 0.532511 1_1:+8290279 Msa0005620:CDS
CTATTTAACTGGGACAAGCC+GGG 0.536675 1_1:+8289552 Msa0005620:CDS
TGCTTGTGTGGAATTGGAGG+AGG 0.537419 1_1:+8291680 Msa0005620:CDS
ACAACGGGAGCACTTCTTGG+TGG 0.537857 1_1:-8288102 None:intergenic
TTTCTCCACCAAATTCATCA+AGG 0.540291 1_1:-8290207 None:intergenic
AAGGATTTGGCTTGCAGTAG+AGG 0.541242 1_1:+8292530 Msa0005620:CDS
GTTTGCCTTGATGAATTTGG+TGG 0.542148 1_1:+8290202 Msa0005620:CDS
GCACTGGTACCTAGTGGTTA+CGG 0.542766 1_1:+8288904 Msa0005620:CDS
GACGATGCATATTATGGCAA+TGG 0.543723 1_1:+8292980 Msa0005620:CDS
GACGATGCATATTATGGCAA+TGG 0.543723 1_1:+8294504 Msa0005620:three_prime_UTR
TGTATCTTCCAAATCTGCAC+TGG 0.545729 1_1:-8294448 None:intergenic
TCATTACATCTGCTACATCA+AGG 0.545852 1_1:+8291509 Msa0005620:CDS
AAATCAGTATGAAAGTATGA+TGG 0.546011 1_1:+8290655 Msa0005620:CDS
GAATTTGAAGGCCTGATGGT+CGG 0.546387 1_1:-8292115 None:intergenic
ACACCGGGCATTGGGGAGGT+GGG 0.548171 1_1:-8288035 None:intergenic
AGCGGATAAGTTAATAATGT+AGG 0.548228 1_1:+8293123 Msa0005620:CDS
AAAGTCATGTTGAAAGAGCA+AGG 0.548323 1_1:+8289921 Msa0005620:CDS
AAGAGCAAGGCTAAGTTCAC+AGG 0.548821 1_1:+8289934 Msa0005620:CDS
AGTCCACAAGGAGGAAATCC+CGG 0.549196 1_1:-8289570 None:intergenic
TGATATTAGTCCAGAATCAA+AGG 0.549744 1_1:+8292268 Msa0005620:CDS
AGGATCGAATTTGATTGCAC+TGG 0.551144 1_1:+8288888 Msa0005620:CDS
TGTTGAAGATTTGATTGATG+TGG 0.552841 1_1:+8292754 Msa0005620:CDS
CGGTGCCAATGTATTTAACT+CGG 0.553052 1_1:+8288813 Msa0005620:CDS
TACATGAGTGAAGCTGGAGA+TGG 0.554559 1_1:+8291420 Msa0005620:CDS
GATTCTGGACTAATATCAGA+TGG 0.557858 1_1:-8292263 None:intergenic
ATTTGTTAAACTATTTAACT+GGG 0.558747 1_1:+8289542 Msa0005620:CDS
CCAAGGCCTTCACATTTGAA+AGG 0.559724 1_1:-8292214 None:intergenic
TGGAGCCGAGTTAAATACAT+TGG 0.560300 1_1:-8288818 None:intergenic
ATCAGTTTACTGTTAAAGAG+TGG 0.561460 1_1:+8290729 Msa0005620:CDS
TTGGAGGAGGTGCTTTCTCA+GGG 0.561855 1_1:+8291693 Msa0005620:CDS
TTCAATAGATTATCGAAATG+TGG 0.567333 1_1:+8292904 Msa0005620:CDS
AGAAGACTCGTAATCGTAGC+CGG 0.568605 1_1:-8292600 None:intergenic
GTCAGGACTATGTAAAGGCA+TGG 0.569704 1_1:+8291001 Msa0005620:CDS
AAGCCGGGATTTCCTCCTTG+TGG 0.571221 1_1:+8289567 Msa0005620:CDS
GTTTGAATTTGAAGGCCTGA+TGG 0.572545 1_1:-8292119 None:intergenic
GGAAAATATGTATAAATGTG+AGG 0.576041 1_1:+8290760 Msa0005620:CDS
AACAGCACAAACAGGCTCAT+CGG 0.576494 1_1:-8288066 None:intergenic
CTCCAGCTTCACTCATGTAA+GGG 0.583020 1_1:-8291416 None:intergenic
GGCTTGCAGTAGAGATTGTG+AGG 0.586486 1_1:+8292385 Msa0005620:CDS
GGCTTGCAGTAGAGGTTGTG+AGG 0.586486 1_1:+8292538 Msa0005620:CDS
TGAATGCCTTTCAAATGTGA+AGG 0.588206 1_1:+8292208 Msa0005620:CDS
TCTTGACTAATATTATCAGA+TGG 0.589574 1_1:-8292413 None:intergenic
CAGGTGTCAGGACTATGTAA+AGG 0.591503 1_1:+8290996 Msa0005620:intron
CTGGAAGTACCGTAACCACT+AGG 0.593348 1_1:-8288913 None:intergenic
AAGAACACCGGGCATTGGGG+AGG 0.596034 1_1:-8288039 None:intergenic
TTGTAATCGGTGGTGTATCG+TGG 0.596551 1_1:+8287877 Msa0005620:CDS
AATTCTGGACTAATATCAGA+TGG 0.597678 1_1:-8292566 None:intergenic
CTCATCGGAGTTAAGAACAC+CGG 0.597915 1_1:-8288051 None:intergenic
CCACAATTCAAGAGTCCACA+AGG 0.598367 1_1:-8289582 None:intergenic
AATATCGAACGCCTTTACAA+CGG 0.598805 1_1:-8288118 None:intergenic
GTATAGGATTGATGACTCAA+AGG 0.599011 1_1:+8291548 Msa0005620:CDS
GGATTGCAATAGAGATTGTG+AGG 0.599183 1_1:+8292235 Msa0005620:CDS
GCTACTCCACATGAAGATGC+TGG 0.600337 1_1:+8293025 Msa0005620:CDS
TTTAAGGCTTCTGCTGCTGG+GGG 0.600788 1_1:+8288862 Msa0005620:CDS
TGTTGTACATGCAGAGTGGG+AGG 0.601756 1_1:+8291343 Msa0005620:intron
TTGTCTCCTGAAGGTTAGAA+GGG 0.606448 1_1:-8290237 None:intergenic
GAAGTCGACGCTAATTTCGA+AGG 0.607230 1_1:+8287993 Msa0005620:CDS
ACAATCTCTATTGCAATCCA+AGG 0.607278 1_1:-8292231 None:intergenic
ACTCTCAAATGTGAAGGTGT+TGG 0.608500 1_1:+8292364 Msa0005620:CDS
TCATTTGGTAAACCTGGAGA+AGG 0.610432 1_1:-8292851 None:intergenic
TCATCGGAGTTAAGAACACC+GGG 0.610855 1_1:-8288050 None:intergenic
GGATAATGGTTGTCTCCTGA+AGG 0.611966 1_1:-8290246 None:intergenic
AAGATGATACTGGTGTGGCT+GGG 0.612233 1_1:+8292822 Msa0005620:CDS
AGGATGCTCACGAGTTCATG+AGG 0.612750 1_1:+8290026 Msa0005620:CDS
TGTTAAAGAGTGGCTTGATG+GGG 0.613216 1_1:+8290739 Msa0005620:CDS
GACTTCGAAGTATTTAGAAG+CGG 0.613603 1_1:-8287976 None:intergenic
GTGGCCCTTCTCCAACAAGT+AGG 0.614253 1_1:-8289765 None:intergenic
GTTAAGAACACCGGGCATTG+GGG 0.614434 1_1:-8288042 None:intergenic
AGCTAAAAGAGAGCAGTCTG+AGG 0.617289 1_1:+8292337 Msa0005620:CDS
TGTAATCGGTGGTGTATCGT+GGG 0.618092 1_1:+8287878 Msa0005620:CDS
TCCAACAAGTAGGCAACAAG+CGG 0.618914 1_1:-8289755 None:intergenic
AATAGATTATCGAAATGTGG+AGG 0.625891 1_1:+8292907 Msa0005620:CDS
TTTAGGTTATGGAAGACAAG+AGG 0.626868 1_1:+8290006 Msa0005620:CDS
AAGATTTAAAGTCTCAGGGA+AGG 0.629675 1_1:-8291391 None:intergenic
ATTTAACTCGGCTCCAAATG+GGG 0.631267 1_1:+8288825 Msa0005620:CDS
TCCAATAGCGATTACAAGAG+CGG 0.633349 1_1:-8287931 None:intergenic
CTAATTGTGATTGTGATTTG+GGG 0.635630 1_1:+8287781 Msa0005620:five_prime_UTR
TCTCGTTTGCCTAATATCGG+TGG 0.635704 1_1:+8289980 Msa0005620:CDS
ACGTAGATGCTTGTAATCGG+TGG 0.640137 1_1:+8287867 Msa0005620:exon
GGACACACTCTCAAATGTGA+AGG 0.640467 1_1:+8292511 Msa0005620:CDS
TTCGGAATTCAATGGAATGG+AGG 0.641913 1_1:-8292468 None:intergenic
TTGATTGCACTGGTACCTAG+TGG 0.650467 1_1:+8288898 Msa0005620:CDS
TAAGAAAGTGGAAATATCAG+CGG 0.652441 1_1:+8293105 Msa0005620:CDS
GGACACACTCTCAAATGTGA+AGG 0.654382 1_1:+8292358 Msa0005620:CDS
AAAATATGTATAAATGTGAG+GGG 0.663025 1_1:+8290762 Msa0005620:CDS
AGAGTACCAGCATCTTCATG+TGG 0.664519 1_1:-8293031 None:intergenic
TGTGGGATAGGAAGCAACAC+CGG 0.677681 1_1:-8293059 None:intergenic
TGCTACATCAAGGATTTCAG+GGG 0.678694 1_1:+8291519 Msa0005620:CDS
AGCTAAACGAGAGCAGTCTG+CGG 0.683742 1_1:+8292490 Msa0005620:CDS
AGATTTGGAAGATACAGATG+CGG 0.692292 1_1:+8292931 Msa0005620:CDS
AGATCAAGATGATACTGGTG+TGG 0.712390 1_1:+8292817 Msa0005620:CDS
GAATGTAAAAGAGCGAACAG+TGG 0.713953 1_1:+8292157 Msa0005620:CDS
AGATTTGGAAGATACAGATG+CGG 0.714200 1_1:+8294455 Msa0005620:three_prime_UTR
TATCCCACAGAAAAGGACAG+AGG 0.718301 1_1:+8293073 Msa0005620:CDS
CAATTCAAGAGTCCACAAGG+AGG 0.738078 1_1:-8289579 None:intergenic
ATCTAGACATTCCTCCAACG+AGG 0.743248 1_1:-8290708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAAAATATTTTTTT+AGG + chr1_1:8290155-8290174 Msa0005620:intron 0.0%
!! TAATAATGATGAAATAAAAA+GGG - chr1_1:8288402-8288421 None:intergenic 10.0%
!! TTAATAATGATGAAATAAAA+AGG - chr1_1:8288403-8288422 None:intergenic 10.0%
!!! AAATCTAAAATTTATATCTT+AGG - chr1_1:8290529-8290548 None:intergenic 10.0%
!!! TTATAATAACTATTTTTGTT+TGG + chr1_1:8290869-8290888 Msa0005620:intron 10.0%
!!! GATTTAATTTATCATTATTG+TGG + chr1_1:8288245-8288264 Msa0005620:intron 15.0%
!! TTAAATAGAGAAAGAAAAAA+AGG + chr1_1:8288336-8288355 Msa0005620:intron 15.0%
!! CAATAATAATGATGAATTAA+GGG - chr1_1:8288575-8288594 None:intergenic 15.0%
!! ACAATAATAATGATGAATTA+AGG - chr1_1:8288576-8288595 None:intergenic 15.0%
!! TAAAAGAAAATTACATCTTT+AGG - chr1_1:8288952-8288971 None:intergenic 15.0%
!! TTCGTAAAAAACTAAATTAT+TGG + chr1_1:8289187-8289206 Msa0005620:intron 15.0%
!!! TTTGTCTATATTTTGTTTAT+AGG + chr1_1:8289440-8289459 Msa0005620:intron 15.0%
!!! TTGTCTATATTTTGTTTATA+GGG + chr1_1:8289441-8289460 Msa0005620:intron 15.0%
!!! AATTTGTTAAACTATTTAAC+TGG + chr1_1:8289541-8289560 Msa0005620:CDS 15.0%
!!! ATTTGTTAAACTATTTAACT+GGG + chr1_1:8289542-8289561 Msa0005620:CDS 15.0%
!! TTAAGAAATTACATTCATTT+CGG - chr1_1:8289790-8289809 None:intergenic 15.0%
!!! TTAACTTCTTTTTTTCATAA+TGG + chr1_1:8289811-8289830 Msa0005620:intron 15.0%
!! TTACATCTATAATAAAATAG+AGG + chr1_1:8290367-8290386 Msa0005620:intron 15.0%
!! TTATTATTGTGAAACTAAAT+AGG + chr1_1:8290604-8290623 Msa0005620:intron 15.0%
!! CTATTTAGTTATACAATAAA+CGG + chr1_1:8290799-8290818 Msa0005620:intron 15.0%
!!! TTTTCTCATGTTTTTTTTTT+TGG + chr1_1:8291318-8291337 Msa0005620:intron 15.0%
!!! TTTCTCATGTTTTTTTTTTT+GGG + chr1_1:8291319-8291338 Msa0005620:intron 15.0%
!! AAATAGTAAAAAGTTTCATT+GGG - chr1_1:8291583-8291602 None:intergenic 15.0%
!! AAAATAGTAAAAAGTTTCAT+TGG - chr1_1:8291584-8291603 None:intergenic 15.0%
!!! CTTTTTACTATTTTTCTTTT+TGG + chr1_1:8291590-8291609 Msa0005620:intron 15.0%
!!! AAATCAAAAAAGTGTCATTA+TGG - chr1_1:8288230-8288249 None:intergenic 20.0%
!!! ATGATTATGATTAGTTGTTT+TGG + chr1_1:8288273-8288292 Msa0005620:intron 20.0%
!!! GTTGTTTTGTTTTGTTTATT+TGG + chr1_1:8288451-8288470 Msa0005620:intron 20.0%
!!! ACTAGTTGTTTTGATTTTTT+TGG + chr1_1:8288614-8288633 Msa0005620:intron 20.0%
!! GTTATGTGTTTGTAATAATT+AGG + chr1_1:8288636-8288655 Msa0005620:intron 20.0%
!! GTTTGTAATAATTAGGAATT+AGG + chr1_1:8288643-8288662 Msa0005620:intron 20.0%
!!! TTTAAGATCTGAATTTAGTT+TGG + chr1_1:8288701-8288720 Msa0005620:intron 20.0%
!! AAAAAATGCAAAAGTAATAG+CGG + chr1_1:8288793-8288812 Msa0005620:CDS 20.0%
!!! AAGCACAATATTTGTAATTT+TGG - chr1_1:8289497-8289516 None:intergenic 20.0%
!! AGTTTAACAAATTCATCATA+AGG - chr1_1:8289534-8289553 None:intergenic 20.0%
!! AGATAATCCAAAACTAAATA+TGG - chr1_1:8290127-8290146 None:intergenic 20.0%
!!! TAAAATTAACAGTTTGTTGT+TGG + chr1_1:8290320-8290339 Msa0005620:intron 20.0%
!! TATAATAAAATAGAGGCTAA+AGG + chr1_1:8290374-8290393 Msa0005620:intron 20.0%
!! ATTGCATAGAAATCAAATAT+TGG - chr1_1:8290486-8290505 None:intergenic 20.0%
!! GAAAATATGTATAAATGTGA+GGG + chr1_1:8290761-8290780 Msa0005620:CDS 20.0%
!! AAAATATGTATAAATGTGAG+GGG + chr1_1:8290762-8290781 Msa0005620:CDS 20.0%
!! CGTTTATTGTATAACTAAAT+AGG - chr1_1:8290801-8290820 None:intergenic 20.0%
!! TGTTTATTAATTGAATGTAG+AGG + chr1_1:8290824-8290843 Msa0005620:intron 20.0%
!! AAGCATTTAACATATCAATA+TGG - chr1_1:8291479-8291498 None:intergenic 20.0%
!!! ATGTTAAATGCTTCATTTTT+TGG + chr1_1:8291486-8291505 Msa0005620:CDS 20.0%
!!! TAAACCAAAGAAAATTTTGA+GGG - chr1_1:8291751-8291770 None:intergenic 20.0%
!! TTTCTAAGTGCTAAAATTTA+AGG - chr1_1:8291900-8291919 None:intergenic 20.0%
!! TAATATTAGTCAAGAATTGA+AGG + chr1_1:8292421-8292440 Msa0005620:CDS 20.0%
!!! ATTATTAAGAAAGTTGTTTC+TGG + chr1_1:8293434-8293453 Msa0005620:intron 20.0%
!!! GTAATCTTAAATGTGTTATT+AGG + chr1_1:8293821-8293840 Msa0005620:intron 20.0%
!!! AATTTTCTCATAAATCTCTT+GGG + chr1_1:8293846-8293865 Msa0005620:intron 20.0%
!!! TGAAAAGTGTTTTTTTTTTG+TGG + chr1_1:8293869-8293888 Msa0005620:intron 20.0%
!!! CTTTTTTATTGTGTTTCTTT+TGG + chr1_1:8293981-8294000 Msa0005620:intron 20.0%
! TTCTAATTGTGATTGTGATT+TGG + chr1_1:8287779-8287798 Msa0005620:five_prime_UTR 25.0%
! TCTAATTGTGATTGTGATTT+GGG + chr1_1:8287780-8287799 Msa0005620:five_prime_UTR 25.0%
!! TTTTCATTGATCGTGAATTA+GGG - chr1_1:8287828-8287847 None:intergenic 25.0%
!! TTTTTCATTGATCGTGAATT+AGG - chr1_1:8287829-8287848 None:intergenic 25.0%
!! CAACGATTTTTAAATATAGC+AGG - chr1_1:8288199-8288218 None:intergenic 25.0%
!!! TTAGTTGTTTTGATTGTGTT+AGG + chr1_1:8288367-8288386 Msa0005620:intron 25.0%
!!! TTTTTGTTGTGTTAGAATAC+TGG + chr1_1:8288541-8288560 Msa0005620:intron 25.0%
! TTATAGGGTTAAATCTTGTA+TGG + chr1_1:8289456-8289475 Msa0005620:intron 25.0%
!! TTACAAATATTGTGCTTTTC+AGG + chr1_1:8289500-8289519 Msa0005620:intron 25.0%
! TCATTATTAACTGAGATATG+AGG + chr1_1:8289654-8289673 Msa0005620:intron 25.0%
! CATTATTAACTGAGATATGA+GGG + chr1_1:8289655-8289674 Msa0005620:intron 25.0%
! AAACGAGATAGAATATTCAT+TGG - chr1_1:8289968-8289987 None:intergenic 25.0%
!! TACCATTTCAATTTTTGTAG+TGG + chr1_1:8290067-8290086 Msa0005620:intron 25.0%
! ATCCACTACAAAAATTGAAA+TGG - chr1_1:8290072-8290091 None:intergenic 25.0%
! TCCAAAACTAAATATGGAAT+AGG - chr1_1:8290121-8290140 None:intergenic 25.0%
! TAACTTCTCAAGTTAAATGT+GGG - chr1_1:8290449-8290468 None:intergenic 25.0%
! GAAATCAAATATTGGCAATT+GGG - chr1_1:8290478-8290497 None:intergenic 25.0%
! AGAAATCAAATATTGGCAAT+TGG - chr1_1:8290479-8290498 None:intergenic 25.0%
! TGATTTCTATGCAATCTTTA+TGG + chr1_1:8290491-8290510 Msa0005620:intron 25.0%
!! AAATCAGTATGAAAGTATGA+TGG + chr1_1:8290655-8290674 Msa0005620:CDS 25.0%
! GGAAAATATGTATAAATGTG+AGG + chr1_1:8290760-8290779 Msa0005620:CDS 25.0%
! AAGGCAATTGTAAGAATATT+TGG - chr1_1:8291051-8291070 None:intergenic 25.0%
!! GTAAACCAAAGAAAATTTTG+AGG - chr1_1:8291752-8291771 None:intergenic 25.0%
! AAAAACTGAATATATCACGT+TGG - chr1_1:8291790-8291809 None:intergenic 25.0%
! TAAGTTATTCAAATAACCAG+AGG - chr1_1:8291944-8291963 None:intergenic 25.0%
! TGAATAACTTACAGTTTATC+TGG + chr1_1:8291953-8291972 Msa0005620:intron 25.0%
! TCTTGACTAATATTATCAGA+TGG - chr1_1:8292416-8292435 None:intergenic 25.0%
!! ACCAAATGATTTTTCTTTCT+TGG + chr1_1:8292865-8292884 Msa0005620:CDS 25.0%
! TCCAAGAAAGAAAAATCATT+TGG - chr1_1:8292869-8292888 None:intergenic 25.0%
! TTCAATAGATTATCGAAATG+TGG + chr1_1:8292904-8292923 Msa0005620:CDS 25.0%
! TATCATTTATATCCCATCAT+CGG + chr1_1:8293173-8293192 Msa0005620:intron 25.0%
!!! AGTTGGGAAATTTTTTTTCT+GGG + chr1_1:8293208-8293227 Msa0005620:intron 25.0%
! AAAAGTTAAAATGAGATCCA+AGG - chr1_1:8293253-8293272 None:intergenic 25.0%
!!! CTCATTTTAACTTTTCTAGA+TGG + chr1_1:8293258-8293277 Msa0005620:intron 25.0%
! TTCTTTATGTACAGAATGAA+GGG - chr1_1:8293338-8293357 None:intergenic 25.0%
! TTTCTTTATGTACAGAATGA+AGG - chr1_1:8293339-8293358 None:intergenic 25.0%
! ATTTGTACAATCATAGTATC+AGG - chr1_1:8293475-8293494 None:intergenic 25.0%
! AAATACATGGCAAAAAAATG+TGG - chr1_1:8293546-8293565 None:intergenic 25.0%
!!! ATAAGCAATGAATGTTGTTT+TGG + chr1_1:8293710-8293729 Msa0005620:intron 25.0%
!! GAATTTTCTCATAAATCTCT+TGG + chr1_1:8293845-8293864 Msa0005620:intron 25.0%
! TTTGTGGTCAAATAATCTAA+TGG + chr1_1:8293885-8293904 Msa0005620:intron 25.0%
! AATACAAATATGTGAACTCA+TGG + chr1_1:8294276-8294295 Msa0005620:intron 25.0%
CTAATTGTGATTGTGATTTG+GGG + chr1_1:8287781-8287800 Msa0005620:five_prime_UTR 30.0%
TACGTTGAATTGTGATTCTA+GGG - chr1_1:8287852-8287871 None:intergenic 30.0%
!! TTTTGATTGTGTTAGGATAC+TGG + chr1_1:8288374-8288393 Msa0005620:intron 30.0%
! TGGTTAACTGATTGTTGATT+AGG + chr1_1:8288471-8288490 Msa0005620:intron 30.0%
! CTGATTGTTGATTAGGAATT+AGG + chr1_1:8288478-8288497 Msa0005620:intron 30.0%
!!! TTTGCATTTTTTCTTATGCC+CGG - chr1_1:8288785-8288804 None:intergenic 30.0%
AAATATAGACAAAGTCACCA+AGG - chr1_1:8289433-8289452 None:intergenic 30.0%
AGAAATTACATTCATTTCGG+TGG - chr1_1:8289787-8289806 None:intergenic 30.0%
TTTCAGGCATTTGTAATGAT+TGG + chr1_1:8289879-8289898 Msa0005620:intron 30.0%
!! GCCTATTCCATATTTAGTTT+TGG + chr1_1:8290117-8290136 Msa0005620:intron 30.0%
! ACCATTATCCAACACATTTT+TGG + chr1_1:8290259-8290278 Msa0005620:CDS 30.0%
ACCAAAAATGTGTTGGATAA+TGG - chr1_1:8290263-8290282 None:intergenic 30.0%
!! ATTATCCAACACATTTTTGG+TGG + chr1_1:8290262-8290281 Msa0005620:CDS 30.0%
!! ATTAACAGTTTGTTGTTGGA+AGG + chr1_1:8290324-8290343 Msa0005620:intron 30.0%
CTAACTTCTCAAGTTAAATG+TGG - chr1_1:8290450-8290469 None:intergenic 30.0%
AAGATTAAGACAGAAGCAAA+TGG - chr1_1:8290578-8290597 None:intergenic 30.0%
ATCAGTTTACTGTTAAAGAG+TGG + chr1_1:8290729-8290748 Msa0005620:CDS 30.0%
!! TTTTTGTTTGGAACTTTGAG+TGG + chr1_1:8290881-8290900 Msa0005620:intron 30.0%
CAGCATAACATGTTAAAAGA+CGG - chr1_1:8290968-8290987 None:intergenic 30.0%
ACATAGAAACTTGAAACTTC+AGG + chr1_1:8291271-8291290 Msa0005620:intron 30.0%
! TTTTAGTATCCTCATTTGTG+TGG + chr1_1:8291640-8291659 Msa0005620:intron 30.0%
TCTGGTGTTTGTTTAAAGAA+TGG + chr1_1:8291971-8291990 Msa0005620:intron 30.0%
ATGGTTACGATATTTGATGT+TGG + chr1_1:8291990-8292009 Msa0005620:intron 30.0%
TGGTTACGATATTTGATGTT+GGG + chr1_1:8291991-8292010 Msa0005620:intron 30.0%
!!! TGTAATTCTTGTTTTGATCC+TGG + chr1_1:8292079-8292098 Msa0005620:intron 30.0%
ATTCGGTAGTTTGAATTTGA+AGG - chr1_1:8292130-8292149 None:intergenic 30.0%
! TTTTACATTCCCTGAAGATT+CGG - chr1_1:8292147-8292166 None:intergenic 30.0%
TGATATTAGTCCAGAATCAA+AGG + chr1_1:8292268-8292287 Msa0005620:CDS 30.0%
AATTCTGGACTAATATCAGA+TGG - chr1_1:8292569-8292588 None:intergenic 30.0%
TGATATTAGTCCAGAATTGA+AGG + chr1_1:8292571-8292590 Msa0005620:CDS 30.0%
TCTTCAACAACATGAGAAAT+GGG - chr1_1:8292743-8292762 None:intergenic 30.0%
ATCTTCAACAACATGAGAAA+TGG - chr1_1:8292744-8292763 None:intergenic 30.0%
TGTTGAAGATTTGATTGATG+TGG + chr1_1:8292754-8292773 Msa0005620:CDS 30.0%
AGATTTGATTGATGTGGATA+TGG + chr1_1:8292760-8292779 Msa0005620:CDS 30.0%
GATTTGATTGATGTGGATAT+GGG + chr1_1:8292761-8292780 Msa0005620:CDS 30.0%
GAAAAATCATTTGGTAAACC+TGG - chr1_1:8292860-8292879 None:intergenic 30.0%
AATAGATTATCGAAATGTGG+AGG + chr1_1:8292907-8292926 Msa0005620:CDS 30.0%
AGGAAATGGAATTAAGAAAG+TGG + chr1_1:8293093-8293112 Msa0005620:CDS 30.0%
TAAGAAAGTGGAAATATCAG+CGG + chr1_1:8293105-8293124 Msa0005620:CDS 30.0%
AGCGGATAAGTTAATAATGT+AGG + chr1_1:8293123-8293142 Msa0005620:CDS 30.0%
!!! GAGTTGGGAAATTTTTTTTC+TGG + chr1_1:8293207-8293226 Msa0005620:intron 30.0%
!!! GTTGGGAAATTTTTTTTCTG+GGG + chr1_1:8293209-8293228 Msa0005620:intron 30.0%
AATGATAGAGCATAATTCCT+TGG + chr1_1:8293303-8293322 Msa0005620:intron 30.0%
!! GTTTCTGGTACAAAATACTT+TGG + chr1_1:8293449-8293468 Msa0005620:intron 30.0%
TTCACAATTTGAAGAACAGT+GGG + chr1_1:8293506-8293525 Msa0005620:intron 30.0%
! TTTTGCCATGTATTTATAGC+AGG + chr1_1:8293551-8293570 Msa0005620:intron 30.0%
TGGCTAGAAATTCACATTTA+AGG + chr1_1:8293905-8293924 Msa0005620:intron 30.0%
! CACATTTAAGGTGATTAAGT+CGG + chr1_1:8293917-8293936 Msa0005620:intron 30.0%
CCACATATAATTCTTAAACG+TGG - chr1_1:8294015-8294034 None:intergenic 30.0%
CCACGTTTAAGAATTATATG+TGG + chr1_1:8294012-8294031 Msa0005620:intron 30.0%
GAAGTCATTTCAGTTATATG+TGG + chr1_1:8294187-8294206 Msa0005620:intron 30.0%
! CTACCTATGTGATTTTTCTA+CGG - chr1_1:8294224-8294243 None:intergenic 30.0%
!! CACAATTTTAGCCAAATTCA+CGG + chr1_1:8294371-8294390 Msa0005620:intron 30.0%
CTACGTTGAATTGTGATTCT+AGG - chr1_1:8287853-8287872 None:intergenic 35.0%
TCAACGTAGATGCTTGTAAT+CGG + chr1_1:8287864-8287883 Msa0005620:exon 35.0%
! GACTTCGAAGTATTTAGAAG+CGG - chr1_1:8287979-8287998 None:intergenic 35.0%
AATATCGAACGCCTTTACAA+CGG - chr1_1:8288121-8288140 None:intergenic 35.0%
TTGTGTTAGAATACTGGTAG+TGG + chr1_1:8288547-8288566 Msa0005620:intron 35.0%
TATTTAACTCGGCTCCAAAT+GGG + chr1_1:8288824-8288843 Msa0005620:CDS 35.0%
ACATCTTTAGGCTTCTTGAT+AGG - chr1_1:8288940-8288959 None:intergenic 35.0%
! TTATTATCCCTTGTTGTCGA+AGG + chr1_1:8289001-8289020 Msa0005620:intron 35.0%
TAAAACATCTTAGCACCTCA+AGG - chr1_1:8289037-8289056 None:intergenic 35.0%
! ACTTTCTAATCATGCTGCTT+GGG - chr1_1:8289263-8289282 None:intergenic 35.0%
AACTTTCTAATCATGCTGCT+TGG - chr1_1:8289264-8289283 None:intergenic 35.0%
! AGTTAGATGACTGAGCTTTT+TGG + chr1_1:8289280-8289299 Msa0005620:intron 35.0%
CTAAAGTTCGATCATGAGAA+GGG - chr1_1:8289619-8289638 None:intergenic 35.0%
!! TTGTAGTTGTTTTGCGAATG+TGG + chr1_1:8289706-8289725 Msa0005620:intron 35.0%
! CTAGTGCTTATGTTTGTTGA+CGG + chr1_1:8289851-8289870 Msa0005620:intron 35.0%
!!! TTTGTTGACGGTGTTTTTTC+AGG + chr1_1:8289863-8289882 Msa0005620:intron 35.0%
AAAGTCATGTTGAAAGAGCA+AGG + chr1_1:8289921-8289940 Msa0005620:CDS 35.0%
CTATCTCGTTTGCCTAATAT+CGG + chr1_1:8289977-8289996 Msa0005620:CDS 35.0%
! TTTAGGTTATGGAAGACAAG+AGG + chr1_1:8290006-8290025 Msa0005620:CDS 35.0%
TGGATTGTACATTAACTGTC+TGG + chr1_1:8290087-8290106 Msa0005620:intron 35.0%
GGATTGTACATTAACTGTCT+GGG + chr1_1:8290088-8290107 Msa0005620:intron 35.0%
TCTGTTTGCCTTGATGAATT+TGG + chr1_1:8290199-8290218 Msa0005620:CDS 35.0%
TTTCTCCACCAAATTCATCA+AGG - chr1_1:8290210-8290229 None:intergenic 35.0%
ATGTTCTCCAGGGTTATTAA+AGG + chr1_1:8290399-8290418 Msa0005620:intron 35.0%
TGTTCTCCAGGGTTATTAAA+GGG + chr1_1:8290400-8290419 Msa0005620:intron 35.0%
TTCTCAAGTTAAATGTGGGA+AGG - chr1_1:8290445-8290464 None:intergenic 35.0%
ATTAAGACAGAAGCAAATGG+TGG - chr1_1:8290575-8290594 None:intergenic 35.0%
GACTTGACAGTTGAAATTCA+TGG + chr1_1:8290677-8290696 Msa0005620:CDS 35.0%
ATGTATAAATGTGAGGGGTA+AGG + chr1_1:8290767-8290786 Msa0005620:intron 35.0%
TAACATGTTATGCTGCTGTT+TGG + chr1_1:8290973-8290992 Msa0005620:intron 35.0%
AATTGCCTTGAAAAGATTCC+AGG + chr1_1:8291062-8291081 Msa0005620:CDS 35.0%
TAGAACATATTACTCAGACC+TGG - chr1_1:8291083-8291102 None:intergenic 35.0%
!! TGTTTGTTGTCAGATGCTTT+AGG + chr1_1:8291108-8291127 Msa0005620:intron 35.0%
ATATCACATGAAGCACAAAG+GGG - chr1_1:8291176-8291195 None:intergenic 35.0%
CATATCACATGAAGCACAAA+GGG - chr1_1:8291177-8291196 None:intergenic 35.0%
TCATATCACATGAAGCACAA+AGG - chr1_1:8291178-8291197 None:intergenic 35.0%
TCAAGTTTCTATGTGTTAGC+AGG - chr1_1:8291265-8291284 None:intergenic 35.0%
! AAGATTTAAAGTCTCAGGGA+AGG - chr1_1:8291394-8291413 None:intergenic 35.0%
! GGCTAAGATTTAAAGTCTCA+GGG - chr1_1:8291398-8291417 None:intergenic 35.0%
TCATTACATCTGCTACATCA+AGG + chr1_1:8291509-8291528 Msa0005620:CDS 35.0%
! GTATAGGATTGATGACTCAA+AGG + chr1_1:8291548-8291567 Msa0005620:CDS 35.0%
AATGTAATGCCACACAAATG+AGG - chr1_1:8291652-8291671 None:intergenic 35.0%
TGTGTGGCATTACATTTCTA+AGG + chr1_1:8291656-8291675 Msa0005620:intron 35.0%
!! CCAAAGAAAATTTTGAGGGA+AGG - chr1_1:8291747-8291766 None:intergenic 35.0%
! CCTTCCCTCAAAATTTTCTT+TGG + chr1_1:8291744-8291763 Msa0005620:intron 35.0%
TGAATATATCACGTTGGCAA+GGG - chr1_1:8291784-8291803 None:intergenic 35.0%
AGAGCAAATGCAGTATGTAT+TGG - chr1_1:8291875-8291894 None:intergenic 35.0%
AATAACCAGAGGTCTCAAAT+AGG - chr1_1:8291933-8291952 None:intergenic 35.0%
ATTCAAACTACCGAATCTTC+AGG + chr1_1:8292134-8292153 Msa0005620:CDS 35.0%
TTCAAACTACCGAATCTTCA+GGG + chr1_1:8292135-8292154 Msa0005620:CDS 35.0%
TGAATGCCTTTCAAATGTGA+AGG + chr1_1:8292208-8292227 Msa0005620:CDS 35.0%
ACAATCTCTATTGCAATCCA+AGG - chr1_1:8292234-8292253 None:intergenic 35.0%
GATTCTGGACTAATATCAGA+TGG - chr1_1:8292266-8292285 None:intergenic 35.0%
AGCTTCTGAGTTCAATTCAA+TGG - chr1_1:8292321-8292340 None:intergenic 35.0%
CAAGAATTGAAGGTTTCTTC+TGG + chr1_1:8292431-8292450 Msa0005620:CDS 35.0%
ACTCTCAAATGTGAAGGATT+TGG + chr1_1:8292517-8292536 Msa0005620:CDS 35.0%
AGATTTGGAAGATACAGATG+CGG + chr1_1:8292931-8292950 Msa0005620:CDS 35.0%
!! TTCTGGGGTTTCTTAATTTG+TGG + chr1_1:8293224-8293243 Msa0005620:intron 35.0%
!! TCTGGGGTTTCTTAATTTGT+GGG + chr1_1:8293225-8293244 Msa0005620:intron 35.0%
!! TTCTTAATTTGTGGGAACCT+TGG + chr1_1:8293233-8293252 Msa0005620:intron 35.0%
GATTGTACAAATTCATGCAC+AGG + chr1_1:8293483-8293502 Msa0005620:intron 35.0%
GTTCACAATTTGAAGAACAG+TGG + chr1_1:8293505-8293524 Msa0005620:intron 35.0%
TGACTCCTGCTATAAATACA+TGG - chr1_1:8293559-8293578 None:intergenic 35.0%
! ATTATTTCTCTAGGTTTCCG+AGG - chr1_1:8293674-8293693 None:intergenic 35.0%
TTGTCTAAGCATGTGATTCA+TGG + chr1_1:8293754-8293773 Msa0005620:intron 35.0%
CAAGTTGTACGTGAATTGTT+TGG - chr1_1:8294140-8294159 None:intergenic 35.0%
CGTAGAAAAATCACATAGGT+AGG + chr1_1:8294222-8294241 Msa0005620:intron 35.0%
AAATATGTGAACTCATGGAG+AGG + chr1_1:8294281-8294300 Msa0005620:intron 35.0%
CTCACATACTCAACAAAATG+GGG - chr1_1:8294337-8294356 None:intergenic 35.0%
GCTCACATACTCAACAAAAT+GGG - chr1_1:8294338-8294357 None:intergenic 35.0%
AGCTCACATACTCAACAAAA+TGG - chr1_1:8294339-8294358 None:intergenic 35.0%
AATCTGCTATTCCGTGAATT+TGG - chr1_1:8294385-8294404 None:intergenic 35.0%
AAATTCACGGAATAGCAGAT+TGG + chr1_1:8294384-8294403 Msa0005620:three_prime_UTR 35.0%
AGATTTGGAAGATACAGATG+CGG + chr1_1:8292931-8292950 Msa0005620:CDS 35.0%
!! TCTAAATTTGGCTTGCACAT+TGG - chr1_1:8294545-8294564 None:intergenic 35.0%
GAGCGGTGAATATGAATTGA+AGG - chr1_1:8287917-8287936 None:intergenic 40.0%
TCCAATAGCGATTACAAGAG+CGG - chr1_1:8287934-8287953 None:intergenic 40.0%
ATATCGAACGCCTTTACAAC+GGG - chr1_1:8288120-8288139 None:intergenic 40.0%
!! GTTGTAAAGGCGTTCGATAT+TGG + chr1_1:8288120-8288139 Msa0005620:CDS 40.0%
! CGGTGCCAATGTATTTAACT+CGG + chr1_1:8288813-8288832 Msa0005620:CDS 40.0%
TGGAGCCGAGTTAAATACAT+TGG - chr1_1:8288821-8288840 None:intergenic 40.0%
GTATTTAACTCGGCTCCAAA+TGG + chr1_1:8288823-8288842 Msa0005620:CDS 40.0%
ATTTAACTCGGCTCCAAATG+GGG + chr1_1:8288825-8288844 Msa0005620:CDS 40.0%
GGCAACTAATGGTGTGTTTA+AGG + chr1_1:8288846-8288865 Msa0005620:CDS 40.0%
AGGATCGAATTTGATTGCAC+TGG + chr1_1:8288888-8288907 Msa0005620:CDS 40.0%
! TAAGATGTTTTACTGCCTCG+AGG + chr1_1:8289045-8289064 Msa0005620:intron 40.0%
TCACTTAAGTGTGTGCTCTT+TGG - chr1_1:8289078-8289097 None:intergenic 40.0%
! CTTTCTAATCATGCTGCTTG+GGG - chr1_1:8289262-8289281 None:intergenic 40.0%
GGAAAACCTTGTCAGTTCAA+GGG - chr1_1:8289350-8289369 None:intergenic 40.0%
! CAGAAACCTCATGTTGGTTA+AGG - chr1_1:8289392-8289411 None:intergenic 40.0%
ATGAGGTTTCTGACCCTTTA+TGG + chr1_1:8289400-8289419 Msa0005620:intron 40.0%
ACTATTTAACTGGGACAAGC+CGG + chr1_1:8289551-8289570 Msa0005620:CDS 40.0%
GACTCTTGAATTGTGGAAAC+AGG + chr1_1:8289589-8289608 Msa0005620:CDS 40.0%
GCTAAAGTTCGATCATGAGA+AGG - chr1_1:8289620-8289639 None:intergenic 40.0%
! AACTGAGATATGAGGGTACA+TGG + chr1_1:8289662-8289681 Msa0005620:intron 40.0%
! CCTAAAGTACCACCGATATT+AGG - chr1_1:8289992-8290011 None:intergenic 40.0%
CCTAATATCGGTGGTACTTT+AGG + chr1_1:8289989-8290008 Msa0005620:CDS 40.0%
! ATCGGTGGTACTTTAGGTTA+TGG + chr1_1:8289995-8290014 Msa0005620:CDS 40.0%
GTTTGCCTTGATGAATTTGG+TGG + chr1_1:8290202-8290221 Msa0005620:CDS 40.0%
TTGTCTCCTGAAGGTTAGAA+GGG - chr1_1:8290240-8290259 None:intergenic 40.0%
GATGTCTAACCTCAGATTGA+AGG - chr1_1:8290291-8290310 None:intergenic 40.0%
GCTAAAGGTTATGTTCTCCA+GGG + chr1_1:8290389-8290408 Msa0005620:intron 40.0%
CCAATTCCCTTTAATAACCC+TGG - chr1_1:8290409-8290428 None:intergenic 40.0%
CCAGGGTTATTAAAGGGAAT+TGG + chr1_1:8290406-8290425 Msa0005620:intron 40.0%
ACTGTTAAAGAGTGGCTTGA+TGG + chr1_1:8290737-8290756 Msa0005620:CDS 40.0%
CTGTTAAAGAGTGGCTTGAT+GGG + chr1_1:8290738-8290757 Msa0005620:CDS 40.0%
TGTTAAAGAGTGGCTTGATG+GGG + chr1_1:8290739-8290758 Msa0005620:CDS 40.0%
! TTGTTTGGAACTTTGAGTGG+TGG + chr1_1:8290884-8290903 Msa0005620:intron 40.0%
! TCAGACCTGGAATCTTTTCA+AGG - chr1_1:8291070-8291089 None:intergenic 40.0%
! GGGCTAAGATTTAAAGTCTC+AGG - chr1_1:8291399-8291418 None:intergenic 40.0%
TCTGCTACATCAAGGATTTC+AGG + chr1_1:8291517-8291536 Msa0005620:CDS 40.0%
CTGCTACATCAAGGATTTCA+GGG + chr1_1:8291518-8291537 Msa0005620:CDS 40.0%
TGCTACATCAAGGATTTCAG+GGG + chr1_1:8291519-8291538 Msa0005620:CDS 40.0%
ATTTCAGGGGAAACTGGTAT+AGG + chr1_1:8291532-8291551 Msa0005620:CDS 40.0%
!! CATTTCTAAGGTTGCTTGTG+TGG + chr1_1:8291668-8291687 Msa0005620:intron 40.0%
TAAGGTTGCTTGTGTGGAAT+TGG + chr1_1:8291674-8291693 Msa0005620:intron 40.0%
GAATATATCACGTTGGCAAG+GGG - chr1_1:8291783-8291802 None:intergenic 40.0%
CTGAATATATCACGTTGGCA+AGG - chr1_1:8291785-8291804 None:intergenic 40.0%
GCCAATTACTCTGAGTGAAA+TGG + chr1_1:8292054-8292073 Msa0005620:intron 40.0%
GCCATTTCACTCAGAGTAAT+TGG - chr1_1:8292058-8292077 None:intergenic 40.0%
!!! TTCTTGTTTTGATCCTGGAC+AGG + chr1_1:8292084-8292103 Msa0005620:intron 40.0%
GTTTGAATTTGAAGGCCTGA+TGG - chr1_1:8292122-8292141 None:intergenic 40.0%
GAATGTAAAAGAGCGAACAG+TGG + chr1_1:8292157-8292176 Msa0005620:CDS 40.0%
GGATTGCAATAGAGATTGTG+AGG + chr1_1:8292235-8292254 Msa0005620:CDS 40.0%
CCAGAAGAAACCTTTGATTC+TGG - chr1_1:8292281-8292300 None:intergenic 40.0%
CCAGAATCAAAGGTTTCTTC+TGG + chr1_1:8292278-8292297 Msa0005620:CDS 40.0%
! ACTCTCAAATGTGAAGGTGT+TGG + chr1_1:8292364-8292383 Msa0005620:CDS 40.0%
TTCGGAATTCAATGGAATGG+AGG - chr1_1:8292471-8292490 None:intergenic 40.0%
AGCTTCGGAATTCAATGGAA+TGG - chr1_1:8292474-8292493 None:intergenic 40.0%
! CGTTTAGCTTCGGAATTCAA+TGG - chr1_1:8292479-8292498 None:intergenic 40.0%
CCAGAATTGAAGGTTTCATC+CGG + chr1_1:8292581-8292600 Msa0005620:CDS 40.0%
AGACCTATAGAAGAGACTTC+AGG + chr1_1:8292785-8292804 Msa0005620:CDS 40.0%
AGATCAAGATGATACTGGTG+TGG + chr1_1:8292817-8292836 Msa0005620:CDS 40.0%
TCATTTGGTAAACCTGGAGA+AGG - chr1_1:8292854-8292873 None:intergenic 40.0%
TCGAAATGTGGAGGAAGATT+TGG + chr1_1:8292916-8292935 Msa0005620:CDS 40.0%
GCTAACGACGATGCATATTA+TGG + chr1_1:8292974-8292993 Msa0005620:CDS 40.0%
GACGATGCATATTATGGCAA+TGG + chr1_1:8292980-8292999 Msa0005620:CDS 40.0%
! GATGCTGGTACTCTATTTTC+CGG + chr1_1:8293040-8293059 Msa0005620:CDS 40.0%
! TTTCCTCTGTCCTTTTCTGT+GGG - chr1_1:8293079-8293098 None:intergenic 40.0%
! ATTTCCTCTGTCCTTTTCTG+TGG - chr1_1:8293080-8293099 None:intergenic 40.0%
ACAGAAAAGGACAGAGGAAA+TGG + chr1_1:8293079-8293098 Msa0005620:CDS 40.0%
TATATCCCATCATCGGAAAG+AGG + chr1_1:8293180-8293199 Msa0005620:intron 40.0%
GTACAGAATGAAGGGCAATA+AGG - chr1_1:8293330-8293349 None:intergenic 40.0%
! AGCTAACTTGTCAACACACA+TGG + chr1_1:8293634-8293653 Msa0005620:intron 40.0%
! CTGAGCGTCATTATTTCTCT+AGG - chr1_1:8293683-8293702 None:intergenic 40.0%
CTAGAGAAATAATGACGCTC+AGG + chr1_1:8293681-8293700 Msa0005620:intron 40.0%
GGTGATTAAGTCGGAAATTC+AGG + chr1_1:8293926-8293945 Msa0005620:intron 40.0%
! CCTATGTGATTTTTCTACGG+CGG - chr1_1:8294221-8294240 None:intergenic 40.0%
TAGCTTAACCAGTGCAGATT+TGG + chr1_1:8294440-8294459 Msa0005620:three_prime_UTR 40.0%
TGTATCTTCCAAATCTGCAC+TGG - chr1_1:8294451-8294470 None:intergenic 40.0%
GCTAACGACGATGCATATTA+TGG + chr1_1:8292974-8292993 Msa0005620:CDS 40.0%
GACGATGCATATTATGGCAA+TGG + chr1_1:8292980-8292999 Msa0005620:CDS 40.0%
ACGTAGATGCTTGTAATCGG+TGG + chr1_1:8287867-8287886 Msa0005620:exon 45.0%
TTGTAATCGGTGGTGTATCG+TGG + chr1_1:8287877-8287896 Msa0005620:CDS 45.0%
TGTAATCGGTGGTGTATCGT+GGG + chr1_1:8287878-8287897 Msa0005620:CDS 45.0%
ACCGCTCTTGTAATCGCTAT+TGG + chr1_1:8287930-8287949 Msa0005620:CDS 45.0%
GAAGTCGACGCTAATTTCGA+AGG + chr1_1:8287993-8288012 Msa0005620:CDS 45.0%
AGTTAAGAACACCGGGCATT+GGG - chr1_1:8288046-8288065 None:intergenic 45.0%
TCATCGGAGTTAAGAACACC+GGG - chr1_1:8288053-8288072 None:intergenic 45.0%
CTCATCGGAGTTAAGAACAC+CGG - chr1_1:8288054-8288073 None:intergenic 45.0%
AACAGCACAAACAGGCTCAT+CGG - chr1_1:8288069-8288088 None:intergenic 45.0%
!! TTTACAACGGGAGCACTTCT+TGG - chr1_1:8288108-8288127 None:intergenic 45.0%
!! AAGAAGTGCTCCCGTTGTAA+AGG + chr1_1:8288107-8288126 Msa0005620:CDS 45.0%
TTTGGCTGTGTGTGTTGTGT+TGG + chr1_1:8288719-8288738 Msa0005620:intron 45.0%
CTGTTGACATTCTGTTGAGC+TGG - chr1_1:8288749-8288768 None:intergenic 45.0%
CAGAATGTCAACAGTCGCAT+TGG + chr1_1:8288755-8288774 Msa0005620:CDS 45.0%
CAACAGTCGCATTGGAATTC+CGG + chr1_1:8288763-8288782 Msa0005620:CDS 45.0%
AACAGTCGCATTGGAATTCC+GGG + chr1_1:8288764-8288783 Msa0005620:CDS 45.0%
ACACCATTAGTTGCCCCATT+TGG - chr1_1:8288841-8288860 None:intergenic 45.0%
! TGTTTAAGGCTTCTGCTGCT+GGG + chr1_1:8288860-8288879 Msa0005620:CDS 45.0%
! TTGATTGCACTGGTACCTAG+TGG + chr1_1:8288898-8288917 Msa0005620:CDS 45.0%
TTTAGGCTTCTTGATAGGCC+TGG - chr1_1:8288935-8288954 None:intergenic 45.0%
CACTTCACCTTCGACAACAA+GGG - chr1_1:8289011-8289030 None:intergenic 45.0%
AAACCTTGTCAGTTCAAGGG+AGG - chr1_1:8289347-8289366 None:intergenic 45.0%
GGGAAAACCTTGTCAGTTCA+AGG - chr1_1:8289351-8289370 None:intergenic 45.0%
! GAACTGACAAGGTTTTCCCT+AGG + chr1_1:8289352-8289371 Msa0005620:intron 45.0%
AAGGGTCAGAAACCTCATGT+TGG - chr1_1:8289398-8289417 None:intergenic 45.0%
CCAAGGCAAGGAACCATAAA+GGG - chr1_1:8289416-8289435 None:intergenic 45.0%
ACCAAGGCAAGGAACCATAA+AGG - chr1_1:8289417-8289436 None:intergenic 45.0%
TAGACAAAGTCACCAAGGCA+AGG - chr1_1:8289428-8289447 None:intergenic 45.0%
CTATTTAACTGGGACAAGCC+GGG + chr1_1:8289552-8289571 Msa0005620:CDS 45.0%
CAATTCAAGAGTCCACAAGG+AGG - chr1_1:8289582-8289601 None:intergenic 45.0%
CCACAATTCAAGAGTCCACA+AGG - chr1_1:8289585-8289604 None:intergenic 45.0%
CCTTGTGGACTCTTGAATTG+TGG + chr1_1:8289582-8289601 Msa0005620:CDS 45.0%
TCCAACAAGTAGGCAACAAG+CGG - chr1_1:8289758-8289777 None:intergenic 45.0%
! TGTTGCCTACTTGTTGGAGA+AGG + chr1_1:8289760-8289779 Msa0005620:CDS 45.0%
! GTTGCCTACTTGTTGGAGAA+GGG + chr1_1:8289761-8289780 Msa0005620:CDS 45.0%
AAGAGCAAGGCTAAGTTCAC+AGG + chr1_1:8289934-8289953 Msa0005620:CDS 45.0%
TCTCGTTTGCCTAATATCGG+TGG + chr1_1:8289980-8289999 Msa0005620:CDS 45.0%
GTTGTCTCCTGAAGGTTAGA+AGG - chr1_1:8290241-8290260 None:intergenic 45.0%
! GGATAATGGTTGTCTCCTGA+AGG - chr1_1:8290249-8290268 None:intergenic 45.0%
GGCTAAAGGTTATGTTCTCC+AGG + chr1_1:8290388-8290407 Msa0005620:intron 45.0%
ATCTAGACATTCCTCCAACG+AGG - chr1_1:8290711-8290730 None:intergenic 45.0%
! ATGTTATGCTGCTGTTTGGC+AGG + chr1_1:8290977-8290996 Msa0005620:intron 45.0%
CAGGTGTCAGGACTATGTAA+AGG + chr1_1:8290996-8291015 Msa0005620:intron 45.0%
GTCAGGACTATGTAAAGGCA+TGG + chr1_1:8291001-8291020 Msa0005620:CDS 45.0%
GGATGTTGTACATGCAGAGT+GGG + chr1_1:8291340-8291359 Msa0005620:intron 45.0%
CTCCAGCTTCACTCATGTAA+GGG - chr1_1:8291419-8291438 None:intergenic 45.0%
TCTCCAGCTTCACTCATGTA+AGG - chr1_1:8291420-8291439 None:intergenic 45.0%
TACATGAGTGAAGCTGGAGA+TGG + chr1_1:8291420-8291439 Msa0005620:CDS 45.0%
TCAAGGATTTCAGGGGAAAC+TGG + chr1_1:8291526-8291545 Msa0005620:CDS 45.0%
! TTCCACCTATTTGAGACCTC+TGG + chr1_1:8291925-8291944 Msa0005620:intron 45.0%
AACCAGAGGTCTCAAATAGG+TGG - chr1_1:8291930-8291949 None:intergenic 45.0%
AATTTGAAGGCCTGATGGTC+GGG - chr1_1:8292117-8292136 None:intergenic 45.0%
GAATTTGAAGGCCTGATGGT+CGG - chr1_1:8292118-8292137 None:intergenic 45.0%
AAAAGAGCGAACAGTGGAAG+TGG + chr1_1:8292163-8292182 Msa0005620:CDS 45.0%
!! TCAGCTTGTTCAGTTTTGCC+AGG - chr1_1:8292191-8292210 None:intergenic 45.0%
CCAAGGCCTTCACATTTGAA+AGG - chr1_1:8292217-8292236 None:intergenic 45.0%
CCTTTCAAATGTGAAGGCCT+TGG + chr1_1:8292214-8292233 Msa0005620:CDS 45.0%
AGCTAAAAGAGAGCAGTCTG+AGG + chr1_1:8292337-8292356 Msa0005620:CDS 45.0%
GGACACACTCTCAAATGTGA+AGG + chr1_1:8292358-8292377 Msa0005620:CDS 45.0%
! AGACTGCTCTCGTTTAGCTT+CGG - chr1_1:8292489-8292508 None:intergenic 45.0%
GGACACACTCTCAAATGTGA+AGG + chr1_1:8292358-8292377 Msa0005620:CDS 45.0%
!! AAGGATTTGGCTTGCAGTAG+AGG + chr1_1:8292530-8292549 Msa0005620:CDS 45.0%
CCGGATGAAACCTTCAATTC+TGG - chr1_1:8292584-8292603 None:intergenic 45.0%
AGAAGACTCGTAATCGTAGC+CGG - chr1_1:8292603-8292622 None:intergenic 45.0%
CAGCCTGAAGTCTCTTCTAT+AGG - chr1_1:8292791-8292810 None:intergenic 45.0%
GCGCAAGATCAAGATGATAC+TGG + chr1_1:8292812-8292831 Msa0005620:CDS 45.0%
AAGATGATACTGGTGTGGCT+GGG + chr1_1:8292822-8292841 Msa0005620:CDS 45.0%
CTTCATGTGGAGTAGCAGAT+TGG - chr1_1:8293021-8293040 None:intergenic 45.0%
! AGAGTACCAGCATCTTCATG+TGG - chr1_1:8293034-8293053 None:intergenic 45.0%
TGCTTCCTATCCCACAGAAA+AGG + chr1_1:8293066-8293085 Msa0005620:CDS 45.0%
! TCTGTCCTTTTCTGTGGGAT+AGG - chr1_1:8293074-8293093 None:intergenic 45.0%
TATCCCACAGAAAAGGACAG+AGG + chr1_1:8293073-8293092 Msa0005620:CDS 45.0%
ATGAAGGGCAATAAGGACCA+AGG - chr1_1:8293323-8293342 None:intergenic 45.0%
GTTATAGCATGCATGAGCTG+TGG - chr1_1:8293959-8293978 None:intergenic 45.0%
CCGCCGTAGAAAAATCACAT+AGG + chr1_1:8294218-8294237 Msa0005620:intron 45.0%
GTGAACTCATGGAGAGGAAT+AGG + chr1_1:8294287-8294306 Msa0005620:intron 45.0%
! GTTAAGAACACCGGGCATTG+GGG - chr1_1:8288045-8288064 None:intergenic 50.0%
GAGTTAAGAACACCGGGCAT+TGG - chr1_1:8288047-8288066 None:intergenic 50.0%
GAAGCGCAAACAGCACAAAC+AGG - chr1_1:8288077-8288096 None:intergenic 50.0%
GCTCCAAATGGGGCAACTAA+TGG + chr1_1:8288835-8288854 Msa0005620:CDS 50.0%
! GTGTTTAAGGCTTCTGCTGC+TGG + chr1_1:8288859-8288878 Msa0005620:CDS 50.0%
! GTTTAAGGCTTCTGCTGCTG+GGG + chr1_1:8288861-8288880 Msa0005620:CDS 50.0%
! TTTAAGGCTTCTGCTGCTGG+GGG + chr1_1:8288862-8288881 Msa0005620:CDS 50.0%
! GCACTGGTACCTAGTGGTTA+CGG + chr1_1:8288904-8288923 Msa0005620:CDS 50.0%
!! CTGGAAGTACCGTAACCACT+AGG - chr1_1:8288916-8288935 None:intergenic 50.0%
CTAGTGGTTACGGTACTTCC+AGG + chr1_1:8288914-8288933 Msa0005620:CDS 50.0%
GCACTTCACCTTCGACAACA+AGG - chr1_1:8289012-8289031 None:intergenic 50.0%
GAAGGTGAAGTGCATCCTTG+AGG + chr1_1:8289019-8289038 Msa0005620:intron 50.0%
ATGCCTCCCTTGAACTGACA+AGG + chr1_1:8289341-8289360 Msa0005620:intron 50.0%
GCAGCTCCTTAACCAACATG+AGG + chr1_1:8289383-8289402 Msa0005620:intron 50.0%
CCCTTTATGGTTCCTTGCCT+TGG + chr1_1:8289413-8289432 Msa0005620:intron 50.0%
AGTCCACAAGGAGGAAATCC+CGG - chr1_1:8289573-8289592 None:intergenic 50.0%
AGGATGCTCACGAGTTCATG+AGG + chr1_1:8290026-8290045 Msa0005620:CDS 50.0%
AGCTGTCCCTTCTAACCTTC+AGG + chr1_1:8290231-8290250 Msa0005620:CDS 50.0%
GGCGACCACCAAAAATGTGT+TGG - chr1_1:8290270-8290289 None:intergenic 50.0%
GGGATGTTGTACATGCAGAG+TGG + chr1_1:8291339-8291358 Msa0005620:intron 50.0%
TGTTGTACATGCAGAGTGGG+AGG + chr1_1:8291343-8291362 Msa0005620:intron 50.0%
TACATGCAGAGTGGGAGGTT+TGG + chr1_1:8291348-8291367 Msa0005620:intron 50.0%
AGCCCTTACATGAGTGAAGC+TGG + chr1_1:8291414-8291433 Msa0005620:CDS 50.0%
GGTTGCTTGTGTGGAATTGG+AGG + chr1_1:8291677-8291696 Msa0005620:intron 50.0%
TGCTTGTGTGGAATTGGAGG+AGG + chr1_1:8291680-8291699 Msa0005620:CDS 50.0%
!! ATTGGAGGAGGTGCTTTCTC+AGG + chr1_1:8291692-8291711 Msa0005620:CDS 50.0%
!! TTGGAGGAGGTGCTTTCTCA+GGG + chr1_1:8291693-8291712 Msa0005620:CDS 50.0%
GGCTTGCAGTAGAGATTGTG+AGG + chr1_1:8292385-8292404 Msa0005620:CDS 50.0%
AGCTAAACGAGAGCAGTCTG+CGG + chr1_1:8292490-8292509 Msa0005620:CDS 50.0%
CAAGATGATACTGGTGTGGC+TGG + chr1_1:8292821-8292840 Msa0005620:CDS 50.0%
GCTACTCCACATGAAGATGC+TGG + chr1_1:8293025-8293044 Msa0005620:CDS 50.0%
TGTGGGATAGGAAGCAACAC+CGG - chr1_1:8293062-8293081 None:intergenic 50.0%
ATCCCATCATCGGAAAGAGG+TGG + chr1_1:8293183-8293202 Msa0005620:intron 50.0%
CACCACCTCTTTCCGATGAT+GGG - chr1_1:8293188-8293207 None:intergenic 50.0%
TCACCACCTCTTTCCGATGA+TGG - chr1_1:8293189-8293208 None:intergenic 50.0%
ATCGGAAAGAGGTGGTGAGT+TGG + chr1_1:8293191-8293210 Msa0005620:intron 50.0%
TCGGAAAGAGGTGGTGAGTT+GGG + chr1_1:8293192-8293211 Msa0005620:intron 50.0%
TGGTCGTGAACTCACTACCT+CGG + chr1_1:8293654-8293673 Msa0005620:intron 50.0%
ATTGGGGAGGTGGGAGAAGA+AGG - chr1_1:8288029-8288048 None:intergenic 55.0%
!! ACAACGGGAGCACTTCTTGG+TGG - chr1_1:8288105-8288124 None:intergenic 55.0%
CTCTTTGGCATCTCTCCTCG+AGG - chr1_1:8289063-8289082 None:intergenic 55.0%
! TCAAGGGAGGCATATGCGCT+TGG - chr1_1:8289334-8289353 None:intergenic 55.0%
! AGGTTTTCCCTAGGCACCAG+AGG + chr1_1:8289361-8289380 Msa0005620:intron 55.0%
GTTGGTTAAGGAGCTGCCTC+TGG - chr1_1:8289380-8289399 None:intergenic 55.0%
AAGCCGGGATTTCCTCCTTG+TGG + chr1_1:8289567-8289586 Msa0005620:CDS 55.0%
! GCCGCTTGTTGCCTACTTGT+TGG + chr1_1:8289754-8289773 Msa0005620:CDS 55.0%
GTGGCCCTTCTCCAACAAGT+AGG - chr1_1:8289768-8289787 None:intergenic 55.0%
TGGTGGTCGCCTTCAATCTG+AGG + chr1_1:8290279-8290298 Msa0005620:CDS 55.0%
TCATGGAGATGCTGCCTCGT+TGG + chr1_1:8290694-8290713 Msa0005620:CDS 55.0%
CGAACAGTGGAAGTGGAACC+TGG + chr1_1:8292170-8292189 Msa0005620:CDS 55.0%
GGCTTGCAGTAGAGGTTGTG+AGG + chr1_1:8292538-8292557 Msa0005620:CDS 55.0%
!! AAGAACACCGGGCATTGGGG+AGG - chr1_1:8288042-8288061 None:intergenic 60.0%
GCTTCTGCTGCTGGGGGTAA+AGG + chr1_1:8288868-8288887 Msa0005620:CDS 60.0%
TGGAGATGCTGCCTCGTTGG+AGG + chr1_1:8290697-8290716 Msa0005620:CDS 60.0%
! GCTGCTGTTTGGCAGGTGTC+AGG + chr1_1:8290984-8291003 Msa0005620:intron 60.0%
AGGTGTACTGCCCGACCATC+AGG + chr1_1:8292104-8292123 Msa0005620:intron 60.0%
! GCTGGGTCTTGTCCTTCTCC+AGG + chr1_1:8292839-8292858 Msa0005620:CDS 60.0%
TCTCCCACCTCCCCAATGCC+CGG + chr1_1:8288032-8288051 Msa0005620:CDS 65.0%
!! ACACCGGGCATTGGGGAGGT+GGG - chr1_1:8288038-8288057 None:intergenic 65.0%
!! AACACCGGGCATTGGGGAGG+TGG - chr1_1:8288039-8288058 None:intergenic 65.0%
GGAGCTGCCTCTGGTGCCTA+GGG - chr1_1:8289371-8289390 None:intergenic 65.0%
AGGAGCTGCCTCTGGTGCCT+AGG - chr1_1:8289372-8289391 None:intergenic 65.0%
GTCGGGCAGTACACCTGTCC+AGG - chr1_1:8292100-8292119 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8287719 8294564 8287719 ID=Msa0005620;Name=Msa0005620
chr1_1 mRNA 8287719 8294564 8287719 ID=Msa0005620-mRNA-1;Parent=Msa0005620;Name=Msa0005620-mRNA-1;_AED=0.11;_eAED=0.11;_QI=154|1|1|1|0.90|0.83|12|194|831
chr1_1 exon 8287719 8288141 8287719 ID=Msa0005620-mRNA-1:exon:2937;Parent=Msa0005620-mRNA-1
chr1_1 exon 8288750 8288957 8288750 ID=Msa0005620-mRNA-1:exon:2938;Parent=Msa0005620-mRNA-1
chr1_1 exon 8289522 8289610 8289522 ID=Msa0005620-mRNA-1:exon:2939;Parent=Msa0005620-mRNA-1
chr1_1 exon 8289712 8289797 8289712 ID=Msa0005620-mRNA-1:exon:2940;Parent=Msa0005620-mRNA-1
chr1_1 exon 8289885 8290047 8289885 ID=Msa0005620-mRNA-1:exon:2941;Parent=Msa0005620-mRNA-1
chr1_1 exon 8290177 8290300 8290177 ID=Msa0005620-mRNA-1:exon:2942;Parent=Msa0005620-mRNA-1
chr1_1 exon 8290626 8290783 8290626 ID=Msa0005620-mRNA-1:exon:2943;Parent=Msa0005620-mRNA-1
chr1_1 exon 8290999 8291083 8290999 ID=Msa0005620-mRNA-1:exon:2944;Parent=Msa0005620-mRNA-1
chr1_1 exon 8291357 8291569 8291357 ID=Msa0005620-mRNA-1:exon:2945;Parent=Msa0005620-mRNA-1
chr1_1 exon 8291678 8291739 8291678 ID=Msa0005620-mRNA-1:exon:2946;Parent=Msa0005620-mRNA-1
chr1_1 exon 8292106 8293155 8292106 ID=Msa0005620-mRNA-1:exon:2947;Parent=Msa0005620-mRNA-1
chr1_1 exon 8294382 8294564 8294382 ID=Msa0005620-mRNA-1:exon:2948;Parent=Msa0005620-mRNA-1
chr1_1 five_prime_UTR 8287719 8287872 8287719 ID=Msa0005620-mRNA-1:five_prime_utr;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8287873 8288141 8287873 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8288750 8288957 8288750 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8289522 8289610 8289522 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8289712 8289797 8289712 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8289885 8290047 8289885 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8290177 8290300 8290177 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8290626 8290783 8290626 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8290999 8291083 8290999 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8291357 8291569 8291357 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8291678 8291739 8291678 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 CDS 8292106 8293144 8292106 ID=Msa0005620-mRNA-1:cds;Parent=Msa0005620-mRNA-1
chr1_1 three_prime_UTR 8293145 8293155 8293145 ID=Msa0005620-mRNA-1:three_prime_utr;Parent=Msa0005620-mRNA-1
chr1_1 three_prime_UTR 8294382 8294564 8294382 ID=Msa0005620-mRNA-1:three_prime_utr;Parent=Msa0005620-mRNA-1
Gene Sequence

>Msa0005620

ATGCTTGTAATCGGTGGTGTATCGTGGGATCTCAATCGATTCCTTCAATTCATATTCACCGCTCTTGTAATCGCTATTGGATTGCACACTCTTGTCAAGAACACCGCTTCTAAATACTTCGAAGTCGACGCTAATTTCGAAGGAGATCATCATCCTTCTTCTCCCACCTCCCCAATGCCCGGTGTTCTTAACTCCGATGAGCCTGTTTGTGCTGTTTGCGCTTCTCATGCCACCAAGAAGTGCTCCCGTTGTAAAGGCGTTCGATATTGCTCAACAGAATGTCAACAGTCGCATTGGAATTCCGGGCATAAGAAAAAATGCAAAAGTAATAGCGGTGCCAATGTATTTAACTCGGCTCCAAATGGGGCAACTAATGGTGTGTTTAAGGCTTCTGCTGCTGGGGGTAAAGGATCGAATTTGATTGCACTGGTACCTAGTGGTTACGGTACTTCCAGGCCTATCAAGAAGCCTAAAGATGTTCTTTTTCCTTATGATGAATTTGTTAAACTATTTAACTGGGACAAGCCGGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGTTTTGCGAATGTGGTTCTTCAGTGTCTCTCATTCACAAAGCCGCTTGTTGCCTACTTGTTGGAGAAGGGCCACCGAAATGAATGCATTTGTAATGATTGGTGCTTTCTATGTGAGTTTGAAAGTCATGTTGAAAGAGCAAGGCTAAGTTCACAGGCGTTTTCTCCAATGAATATTCTATCTCGTTTGCCTAATATCGGTGGTACTTTAGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCAATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTTCTAACCTTCAGGAGACAACCATTATCCAACACATTTTTGGTGGTCGCCTTCAATCTGAGGTTATTTGCACAAAGTGTGATAAGACTTCAAATCAGTATGAAAGTATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCCTCGTTGGAGGAATGTCTAGATCAGTTTACTGTTAAAGAGTGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGTCAGGACTATGTAAAGGCATGGAAACGTCTTACTGTGAAATGTGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTCCAGAGTGGGAGGTTTGGAAAACTTAACAAAAGAGTAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTACATGAGTGAAGCTGGAGATGGATCTGATATCTATAATTTGTATGCTGTTGTAGTCCATATTGATATGTTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCAGGGGAAACTGGTATAGGATTGATGACTCAAAGGTTGCTTGTGTGGAATTGGAGGAGGTGCTTTCTCAGGGAGCATATATGCTGTTGTATAAAAGGTGTACTGCCCGACCATCAGGCCTTCAAATTCAAACTACCGAATCTTCAGGGAATGTAAAAGAGCGAACAGTGGAAGTGGAACCTGGCAAAACTGAACAAGCTGAATGCCTTTCAAATGTGAAGGCCTTGGATTGCAATAGAGATTGTGAGGTTTCACCATCTGATATTAGTCCAGAATCAAAGGTTTCTTCTGGTGATGAATACGAGTCTTCCATTGAATTGAACTCAGAAGCTAAAAGAGAGCAGTCTGAGGACACACTCTCAAATGTGAAGGTGTTGGCTTGCAGTAGAGATTGTGAGGTTTCACCATCTGATAATATTAGTCAAGAATTGAAGGTTTCTTCTGGTTATGAATATGAGTCCTCCATTCCATTGAATTCCGAAGCTAAACGAGAGCAGTCTGCGGACACACTCTCAAATGTGAAGGATTTGGCTTGCAGTAGAGGTTGTGAGGTTGTACCATCTGATATTAGTCCAGAATTGAAGGTTTCATCCGGCTACGATTACGAGTCTTCTGTTGAAGTGAACTCAGAAGCTAAAAGAGAGCAGTCTGACGCAGACATGATTGATGTTGAGTCAACTGATAATTGTAATGATATTTCTTATAGTGCTGTTGATGAATCATCTTATTTACCCATTTCTCATGTTGTTGAAGATTTGATTGATGTGGATATGGGAAGACCTATAGAAGAGACTTCAGGCTGTGCGCAAGATCAAGATGATACTGGTGTGGCTGGGTCTTGTCCTTCTCCAGGTTTACCAAATGATTTTTCTTTCTTGGATAAGCATTCTTCTGTTTCAATAGATTATCGAAATGTGGAGGAAGATTTGGAAGATACAGATGCGGTTAAATGCAAGTTGCTAACAGCTAACGACGATGCATATTATGGCAATGGATATGTTAGTGCAAACCAATCTGCTACTCCACATGAAGATGCTGGTACTCTATTTTCCGGTGTTGCTTCCTATCCCACAGAAAAGGACAGAGGAAATGGAATTAAGAAAGTGGAAATATCAGCGGATAAGTTAATAATGTAG
Protein sequence

>Msa0005620

MLVIGGVSWDLNRFLQFIFTALVIAIGLHTLVKNTASKYFEVDANFEGDHHPSSPTSPMPGVLNSDEPVCAVCASHATKKCSRCKGVRYCSTECQQSHWNSGHKKKCKSNSGANVFNSAPNGATNGVFKASAAGGKGSNLIALVPSGYGTSRPIKKPKDVLFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTKPLVAYLLEKGHRNECICNDWCFLCEFESHVERARLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPSNLQETTIIQHIFGGRLQSEVICTKCDKTSNQYESMMDLTVEIHGDAASLEECLDQFTVKEWLDGENMYKCEGCQDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRVAFPETLNLSPYMSEAGDGSDIYNLYAVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDSKVACVELEEVLSQGAYMLLYKRCTARPSGLQIQTTESSGNVKERTVEVEPGKTEQAECLSNVKALDCNRDCEVSPSDISPESKVSSGDEYESSIELNSEAKREQSEDTLSNVKVLACSRDCEVSPSDNISQELKVSSGYEYESSIPLNSEAKREQSADTLSNVKDLACSRGCEVVPSDISPELKVSSGYDYESSVEVNSEAKREQSDADMIDVESTDNCNDISYSAVDESSYLPISHVVEDLIDVDMGRPIEETSGCAQDQDDTGVAGSCPSPGLPNDFSFLDKHSSVSIDYRNVEEDLEDTDAVKCKLLTANDDAYYGNGYVSANQSATPHEDAGTLFSGVASYPTEKDRGNGIKKVEISADKLIM*