Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684570 | XP_024637040.1 | 68.212 | 151 | 48 | 0 | 7 | 157 | 16 | 166 | 7.81e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684570 | A0A072UKD9 | 70.345 | 145 | 43 | 0 | 13 | 157 | 10 | 154 | 5.02e-65 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054480 | Msa0684570 | 0.816850 | 4.470195e-52 | -8.615850e-47 |
| Msa0112750 | Msa0684570 | 0.804761 | 1.849285e-49 | -8.615850e-47 |
| Msa0625720 | Msa0684570 | 0.821821 | 3.292478e-53 | -8.615850e-47 |
| Msa0633060 | Msa0684570 | 0.815205 | 1.041718e-51 | -8.615850e-47 |
| Msa0638070 | Msa0684570 | 0.801084 | 1.063772e-48 | -8.615850e-47 |
| Msa0663390 | Msa0684570 | 0.813415 | 2.590031e-51 | -8.615850e-47 |
| Msa0667050 | Msa0684570 | 0.803358 | 3.621743e-49 | -8.615850e-47 |
| Msa0684570 | Msa0693380 | 0.819666 | 1.030548e-52 | -8.615850e-47 |
| Msa0684570 | Msa0708520 | 0.801595 | 8.359608e-49 | -8.615850e-47 |
| Msa0684570 | Msa0709500 | 0.808217 | 3.451749e-50 | -8.615850e-47 |
| Msa0684570 | Msa0711780 | 0.804614 | 1.985123e-49 | -8.615850e-47 |
| Msa0684570 | Msa0715470 | 0.816805 | 4.576395e-52 | -8.615850e-47 |
| Msa0684570 | Msa0723990 | 0.803470 | 3.433099e-49 | -8.615850e-47 |
| Msa0684570 | Msa0765380 | 0.808161 | 3.548669e-50 | -8.615850e-47 |
| Msa0684570 | Msa0790850 | 0.807961 | 3.914365e-50 | -8.615850e-47 |
| Msa0684570 | Msa0794670 | 0.801004 | 1.104642e-48 | -8.615850e-47 |
| Msa0684570 | Msa0796530 | 0.804794 | 1.820920e-49 | -8.615850e-47 |
| Msa0684570 | Msa0824660 | 0.801389 | 9.213027e-49 | -8.615850e-47 |
| Msa0684570 | Msa0867890 | 0.800124 | 1.669471e-48 | -8.615850e-47 |
| Msa0684570 | Msa0970030 | 0.806220 | 9.141943e-50 | -8.615850e-47 |
| Msa0684570 | Msa0999100 | 0.806003 | 1.015538e-49 | -8.615850e-47 |
| Msa0684570 | Msa1082500 | 0.820208 | 7.743570e-53 | -8.615850e-47 |
| Msa0684570 | Msa1098400 | 0.822818 | 1.932317e-53 | -8.615850e-47 |
| Msa0684570 | Msa1098420 | 0.835510 | 1.609215e-56 | -8.615850e-47 |
| Msa0684570 | Msa1125760 | 0.801930 | 7.136798e-49 | -8.615850e-47 |
| Msa0684570 | Msa1131220 | 0.811989 | 5.311631e-51 | -8.615850e-47 |
| Msa0684570 | Msa1171360 | 0.810648 | 1.038538e-50 | -8.615850e-47 |
| Msa0684570 | Msa1193290 | 0.801375 | 9.274081e-49 | -8.615850e-47 |
| Msa0684570 | Msa1208880 | 0.803508 | 3.371388e-49 | -8.615850e-47 |
| Msa0684570 | Msa1218600 | 0.801352 | 9.377122e-49 | -8.615850e-47 |
| Msa0684570 | Msa1276440 | 0.802503 | 5.440554e-49 | -8.615850e-47 |
| Msa0684570 | Msa1305340 | 0.823350 | 1.452541e-53 | -8.615850e-47 |
| Msa0684570 | Msa1340260 | 0.804485 | 2.111775e-49 | -8.615850e-47 |
| Msa0684570 | Msa1356440 | 0.803243 | 3.826161e-49 | -8.615850e-47 |
| Msa0684570 | Msa1385670 | 0.820376 | 7.086584e-53 | -8.615850e-47 |
| Msa0684570 | Msa1410210 | 0.810057 | 1.392460e-50 | -8.615850e-47 |
| Msa0684570 | Msa1463670 | 0.810975 | 8.822313e-51 | -8.615850e-47 |
| Msa0217680 | Msa0684570 | 0.808720 | 2.696396e-50 | -8.615850e-47 |
| Msa0223740 | Msa0684570 | 0.822265 | 2.598715e-53 | -8.615850e-47 |
| Msa0463060 | Msa0684570 | 0.811570 | 6.553113e-51 | -8.615850e-47 |
| Msa0481530 | Msa0684570 | 0.823749 | 1.171538e-53 | -8.615850e-47 |
| Msa0271530 | Msa0684570 | 0.806747 | 7.080197e-50 | -8.615850e-47 |
| Msa0287410 | Msa0684570 | 0.800745 | 1.247565e-48 | -8.615850e-47 |
| Msa0309750 | Msa0684570 | 0.802183 | 6.332380e-49 | -8.615850e-47 |
| Msa0309770 | Msa0684570 | 0.801976 | 6.983603e-49 | -8.615850e-47 |
| Msa0326520 | Msa0684570 | 0.811013 | 8.655675e-51 | -8.615850e-47 |
| Msa0329320 | Msa0684570 | 0.800483 | 1.410780e-48 | -8.615850e-47 |
| Msa0360210 | Msa0684570 | 0.800159 | 1.642894e-48 | -8.615850e-47 |
| Msa0484780 | Msa0684570 | 0.829933 | 3.900372e-55 | -8.615850e-47 |
| Msa0529890 | Msa0684570 | 0.824202 | 9.173137e-54 | -8.615850e-47 |
| Msa0557070 | Msa0684570 | 0.822895 | 1.854490e-53 | -8.615850e-47 |
| Msa0585560 | Msa0684570 | 0.821380 | 4.162982e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684570 | MtrunA17_Chr4g0032451 | 70.345 | 145 | 43 | 0 | 13 | 157 | 10 | 154 | 9.67e-69 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 118 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCATCTAAATGATCATTT+TGG | 0.126510 | 4_4:+47944426 | None:intergenic |
| TCAAATCACTATTTAGATTT+AGG | 0.154366 | 4_4:-47944028 | Msa0684570:five_prime_UTR |
| TCCGCTGTCATACTGATTTA+TGG | 0.158707 | 4_4:-47944118 | Msa0684570:five_prime_UTR |
| GTCTCTTTCATTAATCATTT+TGG | 0.164526 | 4_4:-47944054 | Msa0684570:five_prime_UTR |
| CAAATCTTCTATTTAAATTA+TGG | 0.166708 | 4_4:+47944355 | None:intergenic |
| ATTAATGAAAGAGACATTTA+TGG | 0.193663 | 4_4:+47944062 | None:intergenic |
| CCCTTTAACTTTCCTGATTC+AGG | 0.200887 | 4_4:+47944744 | None:intergenic |
| TATGCTATAAGTTTAAAATT+AGG | 0.221337 | 4_4:-47944560 | Msa0684570:five_prime_UTR |
| TTATTCTAAATATTTATTAT+TGG | 0.235823 | 4_4:-47943652 | Msa0684570:five_prime_UTR |
| CAATAGTGTTGCTAGGCTTT+TGG | 0.236556 | 4_4:-47943707 | Msa0684570:five_prime_UTR |
| ACTATTTAGATTTAGGATAA+TGG | 0.247849 | 4_4:-47944021 | Msa0684570:five_prime_UTR |
| TATTCTAAATATTTATTATT+GGG | 0.266469 | 4_4:-47943651 | Msa0684570:five_prime_UTR |
| TGTCAATAGCATAGGTTCTA+TGG | 0.273055 | 4_4:+47944602 | None:intergenic |
| CTGATTTATGCACAATCTAT+TGG | 0.274318 | 4_4:+47943676 | None:intergenic |
| GCCTGAATCAGGAAAGTTAA+AGG | 0.307975 | 4_4:-47944745 | Msa0684570:five_prime_UTR |
| GCCTAATTTCCCCATATCTA+TGG | 0.308925 | 4_4:+47942835 | None:intergenic |
| TGTTAGGTCACTTGTTGAAT+AGG | 0.315732 | 4_4:-47943841 | Msa0684570:five_prime_UTR |
| CTATTTAGATTTAGGATAAT+GGG | 0.318815 | 4_4:-47944020 | Msa0684570:five_prime_UTR |
| GAAACGAGCTGAAACAATTT+AGG | 0.320035 | 4_4:+47942472 | None:intergenic |
| ACAAGAACATATTCTTTAGA+AGG | 0.321927 | 4_4:-47942719 | Msa0684570:three_prime_UTR |
| TTCACAATTACTTTCTAAAT+AGG | 0.322641 | 4_4:+47942742 | None:intergenic |
| GCTATTGACAGCTTATGTTT+AGG | 0.325524 | 4_4:-47944589 | Msa0684570:five_prime_UTR |
| CTTGTGGATGATTATTGATT+AGG | 0.326883 | 4_4:-47943767 | Msa0684570:five_prime_UTR |
| GCCATAGATATGGGGAAATT+AGG | 0.328183 | 4_4:-47942836 | Msa0684570:exon |
| AACATGAGAGGACGCGATTT+AGG | 0.338073 | 4_4:+47942663 | None:intergenic |
| GCGAGATAGAGGTAGCAAAA+TGG | 0.340749 | 4_4:-47942567 | Msa0684570:three_prime_UTR |
| AATAAGTTGAAAATAGCTTA+TGG | 0.352815 | 4_4:+47944676 | None:intergenic |
| GGAAGAGGAGATGTCTCTTC+AGG | 0.356927 | 4_4:-47943318 | Msa0684570:CDS |
| GAGAGAAGGGGAAACAAATC+TGG | 0.372460 | 4_4:+47944883 | None:intergenic |
| AGTCGGGTCTCCAGTTTGAT+AGG | 0.375292 | 4_4:-47944279 | Msa0684570:five_prime_UTR |
| CATAAACTAATTCATATGTT+AGG | 0.376981 | 4_4:-47943857 | Msa0684570:five_prime_UTR |
| TGCAGGTCCATTATGCAAAA+TGG | 0.385212 | 4_4:-47943180 | Msa0684570:CDS |
| GAACAACCGGAGCATCTTGC+AGG | 0.385771 | 4_4:-47943197 | Msa0684570:CDS |
| TGCATTAATTGCGGAACAAC+CGG | 0.397610 | 4_4:-47943210 | Msa0684570:CDS |
| AAGACAGAAAGCCATAGATA+TGG | 0.404902 | 4_4:-47942846 | Msa0684570:exon |
| GAAGAAACGGATCAAATTCC+AGG | 0.408892 | 4_4:-47943089 | Msa0684570:CDS |
| ATTATCATCAACTTATAGTC+AGG | 0.417078 | 4_4:+47944520 | None:intergenic |
| CCGCATTGAAGGGGCGGATA+CGG | 0.425659 | 4_4:+47944784 | None:intergenic |
| GCAAAATGGGTCTGACTTGT+CGG | 0.426581 | 4_4:-47942553 | Msa0684570:three_prime_UTR |
| TTTATACAAGCCTATGCTCC+TGG | 0.427481 | 4_4:-47943892 | Msa0684570:five_prime_UTR |
| TGAATTGATTGCAGCCGAAT+TGG | 0.427925 | 4_4:-47943339 | Msa0684570:CDS |
| ACTTATAGTCAGGGTGTGTA+TGG | 0.431270 | 4_4:+47944530 | None:intergenic |
| GTGAATCGCGCCGCATTGAA+GGG | 0.434887 | 4_4:+47944774 | None:intergenic |
| TTCACAACATAGCCTGAATC+AGG | 0.435462 | 4_4:-47944756 | Msa0684570:five_prime_UTR |
| TCTTCAGGATTCATTGAGAA+AGG | 0.440370 | 4_4:-47943303 | Msa0684570:CDS |
| TGTGAATCGCGCCGCATTGA+AGG | 0.443205 | 4_4:+47944773 | None:intergenic |
| TTCCTTCCCCTTTCTCGATA+CGG | 0.444008 | 4_4:-47944844 | Msa0684570:five_prime_UTR |
| CGAGATAGAGGTAGCAAAAT+GGG | 0.447215 | 4_4:-47942566 | Msa0684570:three_prime_UTR |
| GGTGTAAATTTAAAAGTTGA+GGG | 0.451398 | 4_4:-47943999 | Msa0684570:five_prime_UTR |
| GGTTCTCTGAGATATTTGTT+TGG | 0.454082 | 4_4:-47942698 | Msa0684570:three_prime_UTR |
| TGGAGTCGACCCTATCAAAC+TGG | 0.455066 | 4_4:+47944269 | None:intergenic |
| GTGCGCCGCCGTATCGAGAA+AGG | 0.456170 | 4_4:+47944836 | None:intergenic |
| CAAAAGCCTAGCAACACTAT+TGG | 0.456467 | 4_4:+47943708 | None:intergenic |
| AAATGAAATTCTTGAAAATG+TGG | 0.458691 | 4_4:-47944486 | Msa0684570:five_prime_UTR |
| TGAGATATTTGTTTGGAAAG+AGG | 0.461787 | 4_4:-47942691 | Msa0684570:three_prime_UTR |
| CCTGAATCAGGAAAGTTAAA+GGG | 0.465179 | 4_4:-47944744 | Msa0684570:five_prime_UTR |
| AGACATCTCCTCTTCCAATT+CGG | 0.470053 | 4_4:+47943325 | None:intergenic |
| TGAATTTATTGAGGAAGAAA+CGG | 0.471592 | 4_4:-47943102 | Msa0684570:CDS |
| AATAAATAGTGGTTAAATTG+TGG | 0.476337 | 4_4:-47942793 | Msa0684570:three_prime_UTR |
| AGACAGAAAGCCATAGATAT+GGG | 0.478143 | 4_4:-47942845 | Msa0684570:exon |
| GGGTGTAAATTTAAAAGTTG+AGG | 0.486142 | 4_4:-47944000 | Msa0684570:five_prime_UTR |
| CAAATATGCATGCGAGATAG+AGG | 0.488140 | 4_4:-47942578 | Msa0684570:three_prime_UTR |
| GTAATTCAAGTACAATGTAA+TGG | 0.490963 | 4_4:+47944249 | None:intergenic |
| CAATATTGATGAATTTATTG+AGG | 0.493374 | 4_4:-47943111 | Msa0684570:CDS |
| CAAAATGGGTCTGACTTGTC+GGG | 0.501229 | 4_4:-47942552 | Msa0684570:three_prime_UTR |
| TGCGCCGCCGTATCGAGAAA+GGG | 0.504500 | 4_4:+47944837 | None:intergenic |
| TTCCGAGAAGTCCATGGAAA+AGG | 0.505472 | 4_4:-47943580 | Msa0684570:intron |
| GGGTTGAGTAGACGACTGTT+TGG | 0.509139 | 4_4:-47944724 | Msa0684570:five_prime_UTR |
| TGACAGCGGAGTATACAATC+AGG | 0.509611 | 4_4:+47944131 | None:intergenic |
| GTCAATAGCATAGGTTCTAT+GGG | 0.519011 | 4_4:+47944603 | None:intergenic |
| GATTGCAGCCGAATTGGAAG+AGG | 0.519417 | 4_4:-47943333 | Msa0684570:CDS |
| AATGGACCTGCAAGATGCTC+CGG | 0.521336 | 4_4:+47943191 | None:intergenic |
| TATGTATGCGATTCCATCGC+TGG | 0.521854 | 4_4:-47944810 | Msa0684570:five_prime_UTR |
| CTGAGTCGAAGTGTTGGACT+TGG | 0.522840 | 4_4:-47942498 | Msa0684570:three_prime_UTR |
| GCGGATACGGCAGCCAGCGA+TGG | 0.523822 | 4_4:+47944797 | None:intergenic |
| GCAGAGCTAGCTAATAACTA+GGG | 0.529733 | 4_4:+47943962 | None:intergenic |
| GGCAGAGCTAGCTAATAACT+AGG | 0.530160 | 4_4:+47943961 | None:intergenic |
| ATTTGTCAATGAATTGTACA+TGG | 0.532546 | 4_4:-47943021 | Msa0684570:CDS |
| GGATGATTATTGATTAGGAT+CGG | 0.533324 | 4_4:-47943762 | Msa0684570:five_prime_UTR |
| GGTTAATACTGAAAATATAG+AGG | 0.533887 | 4_4:-47944465 | Msa0684570:five_prime_UTR |
| TTAGTCTATGGATGTTCTTG+TGG | 0.544620 | 4_4:-47943783 | Msa0684570:five_prime_UTR |
| AAAATAGATCCCAGGAGCAT+AGG | 0.545865 | 4_4:+47943882 | None:intergenic |
| CAACATTTCCGAGAAGTCCA+TGG | 0.547363 | 4_4:-47943586 | Msa0684570:CDS |
| GTCAATGAATTGTACATGGA+TGG | 0.549535 | 4_4:-47943017 | Msa0684570:CDS |
| AAATATTTATTATTGGGTGT+AGG | 0.553215 | 4_4:-47943645 | Msa0684570:five_prime_UTR |
| CGCCGTATCGAGAAAGGGGA+AGG | 0.556079 | 4_4:+47944842 | None:intergenic |
| TGATATCCAATAGTGTTGCT+AGG | 0.557729 | 4_4:-47943714 | Msa0684570:five_prime_UTR |
| TTTATGTTAAAATAGATCCC+AGG | 0.557900 | 4_4:+47943874 | None:intergenic |
| TTATACAAGCCTATGCTCCT+GGG | 0.561813 | 4_4:-47943891 | Msa0684570:five_prime_UTR |
| ACATAAGCTGTCAATAGCAT+AGG | 0.563161 | 4_4:+47944594 | None:intergenic |
| GACTGACTGAGTCGAAGTGT+TGG | 0.567320 | 4_4:-47942504 | Msa0684570:three_prime_UTR |
| TTTGGCGGGCTTAAGTGTGG+TGG | 0.571846 | 4_4:-47942440 | Msa0684570:three_prime_UTR |
| GCGGGCTTAAGTGTGGTGGA+CGG | 0.571879 | 4_4:-47942436 | Msa0684570:three_prime_UTR |
| TGTTGATGATATTGAAGATG+TGG | 0.579975 | 4_4:-47944381 | Msa0684570:five_prime_UTR |
| GTCGGGTCTCCAGTTTGATA+GGG | 0.580436 | 4_4:-47944278 | Msa0684570:five_prime_UTR |
| TGAATCGCGCCGCATTGAAG+GGG | 0.584126 | 4_4:+47944775 | None:intergenic |
| AAGGTATGCTGCTTTGTATG+TGG | 0.584948 | 4_4:-47942988 | Msa0684570:CDS |
| TGGGTGTAGGAACAAAATTG+AGG | 0.593531 | 4_4:-47943632 | Msa0684570:five_prime_UTR |
| TGTACATGGATGGACAAGAA+AGG | 0.594997 | 4_4:-47943007 | Msa0684570:CDS |
| ATAGTGGTTAAATTGTGGAC+TGG | 0.599291 | 4_4:-47942788 | Msa0684570:three_prime_UTR |
| GTACATGAAAGCGAGAAAAG+AGG | 0.599519 | 4_4:-47943147 | Msa0684570:CDS |
| CATCTATTAGGATAGTAAAG+TGG | 0.601538 | 4_4:+47942412 | None:intergenic |
| ATCGCGCCGCATTGAAGGGG+CGG | 0.602765 | 4_4:+47944778 | None:intergenic |
| AGTGACTACTTCAATACAGA+GGG | 0.608098 | 4_4:+47943917 | None:intergenic |
| GCGCCGCCGTATCGAGAAAG+GGG | 0.618039 | 4_4:+47944838 | None:intergenic |
| GGAGATGGATGCATTAATTG+CGG | 0.639286 | 4_4:-47943219 | Msa0684570:CDS |
| TTATCATCAACTTATAGTCA+GGG | 0.639664 | 4_4:+47944521 | None:intergenic |
| AATTAATCATTAATAATCAG+TGG | 0.641502 | 4_4:+47943940 | None:intergenic |
| TTGTATGTGGAGAAGTCTAG+TGG | 0.643539 | 4_4:-47942975 | Msa0684570:CDS |
| CCGTATCCGCCCCTTCAATG+CGG | 0.645904 | 4_4:-47944784 | Msa0684570:five_prime_UTR |
| GACAGCGGAGTATACAATCA+GGG | 0.648440 | 4_4:+47944132 | None:intergenic |
| GACAGAAAGCCATAGATATG+GGG | 0.651329 | 4_4:-47942844 | Msa0684570:exon |
| TGTATGTGGAGAAGTCTAGT+GGG | 0.662396 | 4_4:-47942974 | Msa0684570:intron |
| AGTATCGAATTAAACATGAG+AGG | 0.663731 | 4_4:+47942651 | None:intergenic |
| AAGTGACTACTTCAATACAG+AGG | 0.669060 | 4_4:+47943916 | None:intergenic |
| CAGAGCTAGCTAATAACTAG+GGG | 0.675417 | 4_4:+47943963 | None:intergenic |
| TCCATAAATCAGTATGACAG+CGG | 0.683452 | 4_4:+47944117 | None:intergenic |
| CTTCCCCTTTCTCGATACGG+CGG | 0.709564 | 4_4:-47944841 | Msa0684570:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGCTATAAGTTTAAAATT+AGG | - | chr4_4:47942762-47942781 | Msa0684570:three_prime_UTR | 15.0% |
| !! | CAAATCTTCTATTTAAATTA+TGG | + | chr4_4:47942970-47942989 | None:intergenic | 15.0% |
| !!! | TTTTGTGTTGTTATTTTATT+TGG | - | chr4_4:47943003-47943022 | Msa0684570:CDS | 15.0% |
| !!! | TTTGTGTTGTTATTTTATTT+GGG | - | chr4_4:47943004-47943023 | Msa0684570:CDS | 15.0% |
| !! | AATTAATCATTAATAATCAG+TGG | + | chr4_4:47943385-47943404 | None:intergenic | 15.0% |
| !!! | AATAAGTTGAAAATAGCTTA+TGG | + | chr4_4:47942649-47942668 | None:intergenic | 20.0% |
| !! | AAATGAAATTCTTGAAAATG+TGG | - | chr4_4:47942836-47942855 | Msa0684570:exon | 20.0% |
| !!! | ATCATCTAAATGATCATTTT+GGG | + | chr4_4:47942898-47942917 | None:intergenic | 20.0% |
| !!! | TATCATCTAAATGATCATTT+TGG | + | chr4_4:47942899-47942918 | None:intergenic | 20.0% |
| !!! | TTGTGTTGTTATTTTATTTG+GGG | - | chr4_4:47943005-47943024 | Msa0684570:CDS | 20.0% |
| !! | ATTAATGAAAGAGACATTTA+TGG | + | chr4_4:47943263-47943282 | None:intergenic | 20.0% |
| !! | TCAAATCACTATTTAGATTT+AGG | - | chr4_4:47943294-47943313 | Msa0684570:CDS | 20.0% |
| !!! | ACTATTTAGATTTAGGATAA+TGG | - | chr4_4:47943301-47943320 | Msa0684570:CDS | 20.0% |
| !!! | CTATTTAGATTTAGGATAAT+GGG | - | chr4_4:47943302-47943321 | Msa0684570:CDS | 20.0% |
| !! | CATAAACTAATTCATATGTT+AGG | - | chr4_4:47943465-47943484 | Msa0684570:intron | 20.0% |
| !!! | TTTTAAGTTTGATTAGTCTA+TGG | - | chr4_4:47943527-47943546 | Msa0684570:intron | 20.0% |
| !! | AAATATTTATTATTGGGTGT+AGG | - | chr4_4:47943677-47943696 | Msa0684570:five_prime_UTR | 20.0% |
| !!! | GAATTTTTTTTTTCAAAAGC+AGG | + | chr4_4:47943816-47943835 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAATTCTTGCTGT+GGG | - | chr4_4:47943823-47943842 | Msa0684570:five_prime_UTR | 20.0% |
| !! | CAATATTGATGAATTTATTG+AGG | - | chr4_4:47944211-47944230 | Msa0684570:five_prime_UTR | 20.0% |
| !! | AAAACTGTAAGAAGTTAAAA+GGG | + | chr4_4:47944416-47944435 | None:intergenic | 20.0% |
| !! | AAAAACTGTAAGAAGTTAAA+AGG | + | chr4_4:47944417-47944436 | None:intergenic | 20.0% |
| !!! | GTGTTTTTTCAAATAAATAG+TGG | - | chr4_4:47944518-47944537 | Msa0684570:five_prime_UTR | 20.0% |
| !! | AATAAATAGTGGTTAAATTG+TGG | - | chr4_4:47944529-47944548 | Msa0684570:five_prime_UTR | 20.0% |
| !! | TTCACAATTACTTTCTAAAT+AGG | + | chr4_4:47944583-47944602 | None:intergenic | 20.0% |
| !!! | GCTGTTTTAATAAGCTATAT+TGG | + | chr4_4:47942684-47942703 | None:intergenic | 25.0% |
| ! | TTATCATCAACTTATAGTCA+GGG | + | chr4_4:47942804-47942823 | None:intergenic | 25.0% |
| ! | ATTATCATCAACTTATAGTC+AGG | + | chr4_4:47942805-47942824 | None:intergenic | 25.0% |
| ! | GGTTAATACTGAAAATATAG+AGG | - | chr4_4:47942857-47942876 | Msa0684570:CDS | 25.0% |
| ! | GTAATTCAAGTACAATGTAA+TGG | + | chr4_4:47943076-47943095 | None:intergenic | 25.0% |
| !! | GTCTCTTTCATTAATCATTT+TGG | - | chr4_4:47943268-47943287 | Msa0684570:CDS | 25.0% |
| ! | GGTGTAAATTTAAAAGTTGA+GGG | - | chr4_4:47943323-47943342 | Msa0684570:CDS | 25.0% |
| ! | TTTATGTTAAAATAGATCCC+AGG | + | chr4_4:47943451-47943470 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAATTCTTGCTG+TGG | - | chr4_4:47943822-47943841 | Msa0684570:five_prime_UTR | 25.0% |
| ! | TGAATTTATTGAGGAAGAAA+CGG | - | chr4_4:47944220-47944239 | Msa0684570:five_prime_UTR | 25.0% |
| ! | ATTTGTCAATGAATTGTACA+TGG | - | chr4_4:47944301-47944320 | Msa0684570:five_prime_UTR | 25.0% |
| ! | ACAAGAACATATTCTTTAGA+AGG | - | chr4_4:47944603-47944622 | Msa0684570:five_prime_UTR | 25.0% |
| !! | TGTTGATGATATTGAAGATG+TGG | - | chr4_4:47942941-47942960 | Msa0684570:intron | 30.0% |
| !! | GGCATATTTTTACTTAGAGT+CGG | - | chr4_4:47943026-47943045 | Msa0684570:CDS | 30.0% |
| !! | GCATATTTTTACTTAGAGTC+GGG | - | chr4_4:47943027-47943046 | Msa0684570:CDS | 30.0% |
| GGGTGTAAATTTAAAAGTTG+AGG | - | chr4_4:47943322-47943341 | Msa0684570:CDS | 30.0% | |
| ! | CTTGTGGATGATTATTGATT+AGG | - | chr4_4:47943555-47943574 | Msa0684570:intron | 30.0% |
| ! | GGATGATTATTGATTAGGAT+CGG | - | chr4_4:47943560-47943579 | Msa0684570:intron | 30.0% |
| CTGATTTATGCACAATCTAT+TGG | + | chr4_4:47943649-47943668 | None:intergenic | 30.0% | |
| AACTTGAATTTGGCTGTAAA+TGG | - | chr4_4:47943899-47943918 | Msa0684570:five_prime_UTR | 30.0% | |
| !! | TTACGCTACTATTTTGAAAG+AGG | - | chr4_4:47944082-47944101 | Msa0684570:five_prime_UTR | 30.0% |
| !! | TACTATTTTGAAAGAGGAGA+TGG | - | chr4_4:47944088-47944107 | Msa0684570:five_prime_UTR | 30.0% |
| ! | TTAGTGACCATTTTGCATAA+TGG | + | chr4_4:47944152-47944171 | None:intergenic | 30.0% |
| ! | ACAGTTTTTCTTGTCACTAT+AGG | - | chr4_4:47944428-47944447 | Msa0684570:five_prime_UTR | 30.0% |
| TGAGATATTTGTTTGGAAAG+AGG | - | chr4_4:47944631-47944650 | Msa0684570:five_prime_UTR | 30.0% | |
| ! | AGTATCGAATTAAACATGAG+AGG | + | chr4_4:47944674-47944693 | None:intergenic | 30.0% |
| CCTGAATCAGGAAAGTTAAA+GGG | - | chr4_4:47942578-47942597 | Msa0684570:three_prime_UTR | 35.0% | |
| GTCAATAGCATAGGTTCTAT+GGG | + | chr4_4:47942722-47942741 | None:intergenic | 35.0% | |
| TGTCAATAGCATAGGTTCTA+TGG | + | chr4_4:47942723-47942742 | None:intergenic | 35.0% | |
| ACATAAGCTGTCAATAGCAT+AGG | + | chr4_4:47942731-47942750 | None:intergenic | 35.0% | |
| GCTATTGACAGCTTATGTTT+AGG | - | chr4_4:47942733-47942752 | Msa0684570:three_prime_UTR | 35.0% | |
| TCCATAAATCAGTATGACAG+CGG | + | chr4_4:47943208-47943227 | None:intergenic | 35.0% | |
| AGTGACTACTTCAATACAGA+GGG | + | chr4_4:47943408-47943427 | None:intergenic | 35.0% | |
| AAGTGACTACTTCAATACAG+AGG | + | chr4_4:47943409-47943428 | None:intergenic | 35.0% | |
| ! | TGTTAGGTCACTTGTTGAAT+AGG | - | chr4_4:47943481-47943500 | Msa0684570:intron | 35.0% |
| TTAGTCTATGGATGTTCTTG+TGG | - | chr4_4:47943539-47943558 | Msa0684570:intron | 35.0% | |
| ! | TGATATCCAATAGTGTTGCT+AGG | - | chr4_4:47943608-47943627 | Msa0684570:exon | 35.0% |
| AGAAGAGAAGAATAAGCAAC+CGG | - | chr4_4:47943874-47943893 | Msa0684570:five_prime_UTR | 35.0% | |
| ! | ACAGCCAAATTCAAGTTTAC+CGG | + | chr4_4:47943896-47943915 | None:intergenic | 35.0% |
| TGAATTTGGCTGTAAATGGA+TGG | - | chr4_4:47943903-47943922 | Msa0684570:five_prime_UTR | 35.0% | |
| GAATTTGGCTGTAAATGGAT+GGG | - | chr4_4:47943904-47943923 | Msa0684570:five_prime_UTR | 35.0% | |
| TGCTTACTAGAAACTGTTTG+TGG | - | chr4_4:47943946-47943965 | Msa0684570:five_prime_UTR | 35.0% | |
| TCTTCAGGATTCATTGAGAA+AGG | - | chr4_4:47944019-47944038 | Msa0684570:five_prime_UTR | 35.0% | |
| AAAAACCCTAAAAGAGAACG+AGG | - | chr4_4:47944058-47944077 | Msa0684570:five_prime_UTR | 35.0% | |
| ! | GTAAACCTCGTTCTCTTTTA+GGG | + | chr4_4:47944066-47944085 | None:intergenic | 35.0% |
| ! | ATCTCTATTTTCAATGCACC+TGG | + | chr4_4:47944254-47944273 | None:intergenic | 35.0% |
| GTCAATGAATTGTACATGGA+TGG | - | chr4_4:47944305-47944324 | Msa0684570:five_prime_UTR | 35.0% | |
| AAGACAGAAAGCCATAGATA+TGG | - | chr4_4:47944476-47944495 | Msa0684570:five_prime_UTR | 35.0% | |
| AGACAGAAAGCCATAGATAT+GGG | - | chr4_4:47944477-47944496 | Msa0684570:five_prime_UTR | 35.0% | |
| ATAGTGGTTAAATTGTGGAC+TGG | - | chr4_4:47944534-47944553 | Msa0684570:five_prime_UTR | 35.0% | |
| !! | GGTTCTCTGAGATATTTGTT+TGG | - | chr4_4:47944624-47944643 | Msa0684570:five_prime_UTR | 35.0% |
| TCAAAAAAAGAGGGCTAAAC+GGG | + | chr4_4:47944800-47944819 | None:intergenic | 35.0% | |
| GTCAAAAAAAGAGGGCTAAA+CGG | + | chr4_4:47944801-47944820 | None:intergenic | 35.0% | |
| CTCAGTCAGTCAAAAAAAGA+GGG | + | chr4_4:47944809-47944828 | None:intergenic | 35.0% | |
| ACTCAGTCAGTCAAAAAAAG+AGG | + | chr4_4:47944810-47944829 | None:intergenic | 35.0% | |
| GAAACGAGCTGAAACAATTT+AGG | + | chr4_4:47944853-47944872 | None:intergenic | 35.0% | |
| CGAACAGAAAAAGAGAGAAG+GGG | + | chr4_4:47942454-47942473 | None:intergenic | 40.0% | |
| CCGAACAGAAAAAGAGAGAA+GGG | + | chr4_4:47942455-47942474 | None:intergenic | 40.0% | |
| ! | CCCTTCTCTCTTTTTCTGTT+CGG | - | chr4_4:47942452-47942471 | Msa0684570:three_prime_UTR | 40.0% |
| TCCGAACAGAAAAAGAGAGA+AGG | + | chr4_4:47942456-47942475 | None:intergenic | 40.0% | |
| TTCACAACATAGCCTGAATC+AGG | - | chr4_4:47942566-47942585 | Msa0684570:three_prime_UTR | 40.0% | |
| GCCTGAATCAGGAAAGTTAA+AGG | - | chr4_4:47942577-47942596 | Msa0684570:three_prime_UTR | 40.0% | |
| ! | CCCTTTAACTTTCCTGATTC+AGG | + | chr4_4:47942581-47942600 | None:intergenic | 40.0% |
| ACTTATAGTCAGGGTGTGTA+TGG | + | chr4_4:47942795-47942814 | None:intergenic | 40.0% | |
| !! | TCCGCTGTCATACTGATTTA+TGG | - | chr4_4:47943204-47943223 | Msa0684570:CDS | 40.0% |
| CAGAGCTAGCTAATAACTAG+GGG | + | chr4_4:47943362-47943381 | None:intergenic | 40.0% | |
| GCAGAGCTAGCTAATAACTA+GGG | + | chr4_4:47943363-47943382 | None:intergenic | 40.0% | |
| TTTATACAAGCCTATGCTCC+TGG | - | chr4_4:47943430-47943449 | Msa0684570:intron | 40.0% | |
| TTATACAAGCCTATGCTCCT+GGG | - | chr4_4:47943431-47943450 | Msa0684570:intron | 40.0% | |
| ! | AAAATAGATCCCAGGAGCAT+AGG | + | chr4_4:47943443-47943462 | None:intergenic | 40.0% |
| CAAAAGCCTAGCAACACTAT+TGG | + | chr4_4:47943617-47943636 | None:intergenic | 40.0% | |
| !! | CAATAGTGTTGCTAGGCTTT+TGG | - | chr4_4:47943615-47943634 | Msa0684570:exon | 40.0% |
| TGGGTGTAGGAACAAAATTG+AGG | - | chr4_4:47943690-47943709 | Msa0684570:five_prime_UTR | 40.0% | |
| GCAACCGGTAAACTTGAATT+TGG | - | chr4_4:47943889-47943908 | Msa0684570:five_prime_UTR | 40.0% | |
| TGAATTGATTGCAGCCGAAT+TGG | - | chr4_4:47943983-47944002 | Msa0684570:five_prime_UTR | 40.0% | |
| AGACATCTCCTCTTCCAATT+CGG | + | chr4_4:47944000-47944019 | None:intergenic | 40.0% | |
| ! | CGTAAACCTCGTTCTCTTTT+AGG | + | chr4_4:47944067-47944086 | None:intergenic | 40.0% |
| GGAGATGGATGCATTAATTG+CGG | - | chr4_4:47944103-47944122 | Msa0684570:five_prime_UTR | 40.0% | |
| TGCATTAATTGCGGAACAAC+CGG | - | chr4_4:47944112-47944131 | Msa0684570:five_prime_UTR | 40.0% | |
| TGCAGGTCCATTATGCAAAA+TGG | - | chr4_4:47944142-47944161 | Msa0684570:five_prime_UTR | 40.0% | |
| GTACATGAAAGCGAGAAAAG+AGG | - | chr4_4:47944175-47944194 | Msa0684570:five_prime_UTR | 40.0% | |
| GAAGAAACGGATCAAATTCC+AGG | - | chr4_4:47944233-47944252 | Msa0684570:five_prime_UTR | 40.0% | |
| TGTACATGGATGGACAAGAA+AGG | - | chr4_4:47944315-47944334 | Msa0684570:five_prime_UTR | 40.0% | |
| !! | AAGGTATGCTGCTTTGTATG+TGG | - | chr4_4:47944334-47944353 | Msa0684570:five_prime_UTR | 40.0% |
| TTGTATGTGGAGAAGTCTAG+TGG | - | chr4_4:47944347-47944366 | Msa0684570:five_prime_UTR | 40.0% | |
| TGTATGTGGAGAAGTCTAGT+GGG | - | chr4_4:47944348-47944367 | Msa0684570:five_prime_UTR | 40.0% | |
| ! | CTAGTGGGTAAGTTATACAC+TGG | - | chr4_4:47944363-47944382 | Msa0684570:five_prime_UTR | 40.0% |
| GACAGAAAGCCATAGATATG+GGG | - | chr4_4:47944478-47944497 | Msa0684570:five_prime_UTR | 40.0% | |
| GCCATAGATATGGGGAAATT+AGG | - | chr4_4:47944486-47944505 | Msa0684570:five_prime_UTR | 40.0% | |
| GCCTAATTTCCCCATATCTA+TGG | + | chr4_4:47944490-47944509 | None:intergenic | 40.0% | |
| CAAATATGCATGCGAGATAG+AGG | - | chr4_4:47944744-47944763 | Msa0684570:five_prime_UTR | 40.0% | |
| CGAGATAGAGGTAGCAAAAT+GGG | - | chr4_4:47944756-47944775 | Msa0684570:five_prime_UTR | 40.0% | |
| CAAAAAAAGAGGGCTAAACG+GGG | + | chr4_4:47944799-47944818 | None:intergenic | 40.0% | |
| GAGAGAAGGGGAAACAAATC+TGG | + | chr4_4:47942442-47942461 | None:intergenic | 45.0% | |
| TTCCTTCCCCTTTCTCGATA+CGG | - | chr4_4:47942478-47942497 | Msa0684570:three_prime_UTR | 45.0% | |
| TATGTATGCGATTCCATCGC+TGG | - | chr4_4:47942512-47942531 | Msa0684570:three_prime_UTR | 45.0% | |
| GACAGCGGAGTATACAATCA+GGG | + | chr4_4:47943193-47943212 | None:intergenic | 45.0% | |
| TGACAGCGGAGTATACAATC+AGG | + | chr4_4:47943194-47943213 | None:intergenic | 45.0% | |
| GGCAGAGCTAGCTAATAACT+AGG | + | chr4_4:47943364-47943383 | None:intergenic | 45.0% | |
| CAACATTTCCGAGAAGTCCA+TGG | - | chr4_4:47943736-47943755 | Msa0684570:five_prime_UTR | 45.0% | |
| TTCCGAGAAGTCCATGGAAA+AGG | - | chr4_4:47943742-47943761 | Msa0684570:five_prime_UTR | 45.0% | |
| ! | CACCTTTTCCATGGACTTCT+CGG | + | chr4_4:47943747-47943766 | None:intergenic | 45.0% |
| ! | TGTATGTCGCACCTTTTCCA+TGG | + | chr4_4:47943756-47943775 | None:intergenic | 45.0% |
| AACATGAGAGGACGCGATTT+AGG | + | chr4_4:47944662-47944681 | None:intergenic | 45.0% | |
| GCGAGATAGAGGTAGCAAAA+TGG | - | chr4_4:47944755-47944774 | Msa0684570:five_prime_UTR | 45.0% | |
| ! | GCAAAATGGGTCTGACTTGT+CGG | - | chr4_4:47944769-47944788 | Msa0684570:five_prime_UTR | 45.0% |
| ! | CAAAATGGGTCTGACTTGTC+GGG | - | chr4_4:47944770-47944789 | Msa0684570:five_prime_UTR | 45.0% |
| !!! | GCTCGTTTCGTCTCGTTTTT+TGG | - | chr4_4:47944864-47944883 | Msa0684570:five_prime_UTR | 45.0% |
| !!! | CGTTTCGTCTCGTTTTTTGG+CGG | - | chr4_4:47944867-47944886 | Msa0684570:five_prime_UTR | 45.0% |
| !!! | GTTTCGTCTCGTTTTTTGGC+GGG | - | chr4_4:47944868-47944887 | Msa0684570:five_prime_UTR | 45.0% |
| !!! | TTTTTTGGCGGGCTTAAGTG+TGG | - | chr4_4:47944879-47944898 | Msa0684570:five_prime_UTR | 45.0% |
| !! | TTATTCTAAATATTTATTAT+TGG | - | chr4_4:47943670-47943689 | Msa0684570:five_prime_UTR | 5.0% |
| !! | TATTCTAAATATTTATTATT+GGG | - | chr4_4:47943671-47943690 | Msa0684570:five_prime_UTR | 5.0% |
| GGGTTGAGTAGACGACTGTT+TGG | - | chr4_4:47942598-47942617 | Msa0684570:three_prime_UTR | 50.0% | |
| AGTCGGGTCTCCAGTTTGAT+AGG | - | chr4_4:47943043-47943062 | Msa0684570:CDS | 50.0% | |
| GTCGGGTCTCCAGTTTGATA+GGG | - | chr4_4:47943044-47943063 | Msa0684570:CDS | 50.0% | |
| TGGAGTCGACCCTATCAAAC+TGG | + | chr4_4:47943056-47943075 | None:intergenic | 50.0% | |
| ! | CTTGCTGTGGGCAAAACTGA+AGG | - | chr4_4:47943835-47943854 | Msa0684570:five_prime_UTR | 50.0% |
| GATTGCAGCCGAATTGGAAG+AGG | - | chr4_4:47943989-47944008 | Msa0684570:five_prime_UTR | 50.0% | |
| GGAAGAGGAGATGTCTCTTC+AGG | - | chr4_4:47944004-47944023 | Msa0684570:five_prime_UTR | 50.0% | |
| AATGGACCTGCAAGATGCTC+CGG | + | chr4_4:47944134-47944153 | None:intergenic | 50.0% | |
| GACTGACTGAGTCGAAGTGT+TGG | - | chr4_4:47944818-47944837 | Msa0684570:five_prime_UTR | 50.0% | |
| !! | CTGAGTCGAAGTGTTGGACT+TGG | - | chr4_4:47944824-47944843 | Msa0684570:five_prime_UTR | 50.0% |
| CTTCCCCTTTCTCGATACGG+CGG | - | chr4_4:47942481-47942500 | Msa0684570:three_prime_UTR | 55.0% | |
| TGAATCGCGCCGCATTGAAG+GGG | + | chr4_4:47942550-47942569 | None:intergenic | 55.0% | |
| GTGAATCGCGCCGCATTGAA+GGG | + | chr4_4:47942551-47942570 | None:intergenic | 55.0% | |
| TGTGAATCGCGCCGCATTGA+AGG | + | chr4_4:47942552-47942571 | None:intergenic | 55.0% | |
| ! | GAACAACCGGAGCATCTTGC+AGG | - | chr4_4:47944125-47944144 | Msa0684570:five_prime_UTR | 55.0% |
| !! | TTTGGCGGGCTTAAGTGTGG+TGG | - | chr4_4:47944882-47944901 | Msa0684570:five_prime_UTR | 55.0% |
| CGCCGTATCGAGAAAGGGGA+AGG | + | chr4_4:47942483-47942502 | None:intergenic | 60.0% | |
| TGCGCCGCCGTATCGAGAAA+GGG | + | chr4_4:47942488-47942507 | None:intergenic | 60.0% | |
| CCGCATTGAAGGGGCGGATA+CGG | + | chr4_4:47942541-47942560 | None:intergenic | 60.0% | |
| CCGTATCCGCCCCTTCAATG+CGG | - | chr4_4:47942538-47942557 | Msa0684570:three_prime_UTR | 60.0% | |
| ! | GCGGGCTTAAGTGTGGTGGA+CGG | - | chr4_4:47944886-47944905 | Msa0684570:five_prime_UTR | 60.0% |
| GCGCCGCCGTATCGAGAAAG+GGG | + | chr4_4:47942487-47942506 | None:intergenic | 65.0% | |
| GTGCGCCGCCGTATCGAGAA+AGG | + | chr4_4:47942489-47942508 | None:intergenic | 65.0% | |
| ATCGCGCCGCATTGAAGGGG+CGG | + | chr4_4:47942547-47942566 | None:intergenic | 65.0% | |
| GCGGATACGGCAGCCAGCGA+TGG | + | chr4_4:47942528-47942547 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47942419 | 47944925 | 47942419 | ID=Msa0684570;Name=Msa0684570 |
| chr4_4 | mRNA | 47942419 | 47944925 | 47942419 | ID=Msa0684570-mRNA-1;Parent=Msa0684570;Name=Msa0684570-mRNA-1;_AED=0.16;_eAED=0.16;_QI=1309|1|1|1|1|1|3|433|157 |
| chr4_4 | exon | 47942419 | 47942894 | 47942419 | ID=Msa0684570-mRNA-1:exon:11867;Parent=Msa0684570-mRNA-1 |
| chr4_4 | exon | 47942975 | 47943369 | 47942975 | ID=Msa0684570-mRNA-1:exon:11866;Parent=Msa0684570-mRNA-1 |
| chr4_4 | exon | 47943581 | 47944925 | 47943581 | ID=Msa0684570-mRNA-1:exon:11865;Parent=Msa0684570-mRNA-1 |
| chr4_4 | five_prime_UTR | 47943617 | 47944925 | 47943617 | ID=Msa0684570-mRNA-1:five_prime_utr;Parent=Msa0684570-mRNA-1 |
| chr4_4 | CDS | 47943581 | 47943616 | 47943581 | ID=Msa0684570-mRNA-1:cds;Parent=Msa0684570-mRNA-1 |
| chr4_4 | CDS | 47942975 | 47943369 | 47942975 | ID=Msa0684570-mRNA-1:cds;Parent=Msa0684570-mRNA-1 |
| chr4_4 | CDS | 47942852 | 47942894 | 47942852 | ID=Msa0684570-mRNA-1:cds;Parent=Msa0684570-mRNA-1 |
| chr4_4 | three_prime_UTR | 47942419 | 47942851 | 47942419 | ID=Msa0684570-mRNA-1:three_prime_utr;Parent=Msa0684570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
