AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223740 MtrunA17_Chr2g0329421 98.104 211 4 0 1 211 1 211 2.83e-155 428
Msa0223740 MtrunA17_Chr4g0033611 68.878 196 58 2 1 194 50 244 6.30e-96 280
Msa0223740 MtrunA17_Chr3g0078041 41.304 184 99 3 23 202 46 224 8.35e-41 138
Msa0223740 MtrunA17_Chr2g0329361 36.126 191 109 4 26 204 60 249 1.16e-35 126
Msa0223740 MtrunA17_Chr7g0233911 36.585 205 116 4 4 204 15 209 4.02e-34 120
Msa0223740 MtrunA17_Chr5g0448761 54.128 109 45 3 26 129 59 167 9.49e-22 92.8
Msa0223740 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 182 271 1.94e-21 91.7
Msa0223740 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 28 117 1.75e-18 83.2
Msa0223740 MtrunA17_Chr6g0458391 40.196 102 60 1 27 127 225 326 2.87e-20 88.6
Msa0223740 MtrunA17_Chr6g0458391 38.318 107 65 1 27 132 91 197 1.24e-16 77.8
Msa0223740 MtrunA17_Chr1g0202341 38.596 114 58 3 26 132 50 158 1.48e-19 86.3
Msa0223740 MtrunA17_Chr3g0082121 41.121 107 57 3 27 129 43 147 1.57e-18 83.2
Msa0223740 MtrunA17_Chr5g0401121 39.815 108 59 3 27 130 56 161 2.44e-18 78.6
Msa0223740 MtrunA17_Chr1g0203721 39.796 98 58 1 29 125 65 162 1.47e-17 80.5
Msa0223740 MtrunA17_Chr2g0291591 34.058 138 86 2 22 157 57 191 1.32e-15 74.7
Msa0223740 MtrunA17_Chr5g0440451 36.538 104 54 2 24 127 40 131 8.64e-15 72.4
Msa0223740 MtrunA17_Chr2g0291581 38.235 102 58 2 27 127 71 168 3.99e-13 67.8
Msa0223740 MtrunA17_Chr3g0080351 31.405 121 69 2 26 132 75 195 1.15e-12 66.2
Msa0223740 MtrunA17_Chr8g0363841 30.088 113 75 2 25 133 12 124 1.30e-12 66.2
Msa0223740 MtrunA17_Chr7g0258861 35.577 104 64 2 26 127 9 111 5.61e-12 63.5
Msa0223740 MtrunA17_Chr2g0329031 31.304 115 73 3 20 132 7 117 1.52e-11 63.2
Msa0223740 MtrunA17_Chr2g0324011 38.462 104 60 3 26 127 9 110 1.85e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223740 AT3G59470.3 67.391 184 60 0 25 208 68 251 1.84e-95 279
Msa0223740 AT3G59470.1 67.391 184 60 0 25 208 68 251 1.84e-95 279
Msa0223740 AT3G59470.2 67.391 184 60 0 25 208 80 263 2.90e-95 278
Msa0223740 AT3G07500.1 44.382 178 95 3 26 199 32 209 6.44e-47 154
Msa0223740 AT2G43280.1 40.113 177 97 3 26 198 21 192 2.09e-35 124
Msa0223740 AT4G12850.1 34.973 183 106 3 24 202 8 181 2.65e-34 120
Msa0223740 AT2G43280.2 39.394 165 91 3 42 202 2 161 9.84e-33 116
Msa0223740 AT4G38180.1 56.481 108 43 2 26 129 72 179 2.15e-25 103
Msa0223740 AT4G12850.4 44.231 104 56 1 24 127 8 109 1.57e-24 94.4
Msa0223740 AT4G12850.2 44.231 104 56 1 24 127 8 109 2.18e-24 94.0
Msa0223740 AT3G06250.2 44.118 102 45 1 26 127 27 116 9.86e-22 93.2
Msa0223740 AT3G06250.2 41.509 106 50 1 26 131 189 282 1.24e-21 92.8
Msa0223740 AT3G06250.1 44.118 102 45 1 26 127 27 116 9.86e-22 93.2
Msa0223740 AT3G06250.1 41.509 106 50 1 26 131 189 282 1.24e-21 92.8
Msa0223740 AT3G06250.3 44.118 102 45 1 26 127 27 116 9.86e-22 93.2
Msa0223740 AT3G06250.3 41.509 106 50 1 26 131 189 282 1.24e-21 92.8
Msa0223740 AT5G18960.2 40.367 109 53 1 23 131 207 303 2.66e-21 91.7
Msa0223740 AT5G18960.2 43.137 102 46 1 26 127 42 131 2.99e-21 91.7
Msa0223740 AT5G18960.1 40.367 109 53 1 23 131 207 303 2.66e-21 91.7
Msa0223740 AT5G18960.1 43.137 102 46 1 26 127 42 131 2.99e-21 91.7
Msa0223740 AT1G52520.1 36.792 106 64 1 22 127 80 182 6.99e-17 79.0
Msa0223740 AT1G80010.1 36.792 106 64 1 27 132 95 197 2.03e-15 74.7
Msa0223740 AT4G19990.6 30.000 150 75 3 24 159 21 154 1.94e-14 72.0
Msa0223740 AT4G19990.2 30.000 150 75 3 24 159 21 154 1.94e-14 72.0
Msa0223740 AT4G19990.7 30.000 150 75 3 24 159 35 168 2.29e-14 71.6
Msa0223740 AT4G19990.3 30.000 150 75 3 24 159 21 154 2.33e-14 71.6
Msa0223740 AT4G19990.4 30.000 150 75 3 24 159 21 154 2.33e-14 71.6
Msa0223740 AT4G19990.5 30.000 150 75 3 24 159 21 154 2.63e-14 71.6
Msa0223740 AT5G28530.3 31.707 123 78 4 10 127 38 159 5.34e-13 67.8
Msa0223740 AT5G28530.2 31.707 123 78 4 10 127 38 159 5.34e-13 67.8
Msa0223740 AT5G28530.1 31.707 123 78 4 10 127 38 159 5.51e-13 67.8
Msa0223740 AT5G28530.4 31.707 123 78 4 10 127 38 159 5.90e-13 67.4
Msa0223740 AT5G28530.5 31.707 123 78 4 10 127 38 159 5.94e-13 67.4
Msa0223740 AT2G32250.6 34.862 109 65 2 23 129 34 138 1.08e-12 66.6
Msa0223740 AT2G32250.1 34.862 109 65 2 23 129 34 138 1.08e-12 66.6
Msa0223740 AT2G32250.3 34.862 109 65 2 23 129 34 138 1.08e-12 66.6
Msa0223740 AT2G32250.2 34.862 109 65 2 23 129 34 138 1.12e-12 66.6
Msa0223740 AT2G32250.4 34.862 109 65 2 23 129 34 138 1.12e-12 66.6
Msa0223740 AT2G32250.5 34.862 109 65 2 23 129 34 138 1.16e-12 66.6
Msa0223740 AT3G22170.2 30.137 146 85 4 2 132 46 189 1.00e-11 63.9
Msa0223740 AT3G22170.1 30.137 146 85 4 2 132 46 189 1.00e-11 63.9
Msa0223740 AT2G32250.7 35.000 100 59 2 32 129 2 97 1.60e-11 63.5
Msa0223740 AT2G32250.8 35.000 100 59 2 32 129 2 97 1.66e-11 63.2
Msa0223740 AT2G27110.2 28.079 203 121 6 4 200 27 210 3.62e-11 62.4
Msa0223740 AT2G27110.1 28.079 203 121 6 4 200 27 210 3.62e-11 62.4
Msa0223740 AT1G76320.2 35.000 100 59 3 32 129 2 97 5.77e-11 61.6
Msa0223740 AT1G76320.1 35.000 100 59 3 32 129 2 97 5.94e-11 61.6
Msa0223740 AT1G76320.4 35.000 100 59 3 32 129 2 97 5.94e-11 61.6
Msa0223740 AT1G76320.3 35.000 100 59 3 32 129 2 97 6.77e-11 61.6

Find 72 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAATGCCTCACCATTAC+TGG 0.248927 2_1:+73385272 None:intergenic
AGGCGTGATGGATCTGTTAT+TGG 0.276667 2_1:-73384964 Msa0223740:CDS
TGGTTGCAGGGCAATGATTA+TGG 0.280378 2_1:-73384857 Msa0223740:CDS
CAGAAACAAGGGTTGGTTGC+AGG 0.300475 2_1:-73384870 Msa0223740:CDS
CAGGAACTATTGAGGTGATT+TGG 0.320322 2_1:+73385124 None:intergenic
TTGTAACTCAGTCCAGCTTT+AGG 0.332915 2_1:-73383687 Msa0223740:three_prime_UTR
AGCGAGCTGAAACCTATAAA+AGG 0.338658 2_1:-73383918 Msa0223740:CDS
AAGTCCCTTCTGCCTCTTCC+AGG 0.350515 2_1:+73384766 None:intergenic
GTTCTCATAAGCGATGTTAC+AGG 0.355609 2_1:+73385105 None:intergenic
GTTCAGTTTGTTAAGTTCAA+TGG 0.356308 2_1:-73383647 Msa0223740:three_prime_UTR
CAATGGAATTCAATATTCAT+TGG 0.361135 2_1:-73383630 Msa0223740:three_prime_UTR
AACAAACAGAGAATACAATT+TGG 0.369531 2_1:-73386106 Msa0223740:five_prime_UTR
AATATGACTCAAGATTCTTC+TGG 0.372511 2_1:-73385153 Msa0223740:CDS
TTTCGATCCAACTGATGAAC+AGG 0.398044 2_1:-73385187 Msa0223740:five_prime_UTR
GCATTAGCAAATGCTACTAT+TGG 0.399597 2_1:-73385258 Msa0223740:five_prime_UTR
GGAAATTAAATTCTGGTCTA+TGG 0.402271 2_1:-73384831 Msa0223740:CDS
AGTAGAGAGTGTGAAGGAGA+TGG 0.412908 2_1:-73383827 Msa0223740:CDS
ATGGTGAGGAAATTAAATTC+TGG 0.421065 2_1:-73384838 Msa0223740:CDS
GGAATAAGAAAATTCTATCA+TGG 0.429067 2_1:+73383473 None:intergenic
ACAAGAGAGTCAGTTTCAAT+TGG 0.429861 2_1:-73383794 Msa0223740:CDS
GTGCTGTATCTTCTTTGAAA+CGG 0.446703 2_1:+73383852 None:intergenic
ATAGCATTAATTCACAAGAA+TGG 0.453968 2_1:+73383534 None:intergenic
GGCGTGATGGATCTGTTATT+GGG 0.455689 2_1:-73384963 Msa0223740:CDS
CTTCGTTTATGAGCAATATC+CGG 0.471781 2_1:-73384746 Msa0223740:intron
TTGTAAATTTGATTCATGGC+TGG 0.473514 2_1:-73383440 None:intergenic
GCTCTAGTTTGTAACAAAGA+AGG 0.478666 2_1:-73384937 Msa0223740:CDS
AACTCACTTGCACCTAAAGC+TGG 0.484241 2_1:+73383675 None:intergenic
AAATGCATGTGCTTCAGCTT+CGG 0.486804 2_1:+73385047 None:intergenic
GGTGCAGTGGAGATTGAGAT+TGG 0.489609 2_1:-73385300 Msa0223740:intron
AATTCATATGCTACACGTGT+TGG 0.492545 2_1:-73385021 Msa0223740:CDS
TGATGGATCTGTTATTGGGC+GGG 0.492905 2_1:-73384959 Msa0223740:CDS
TCTTGATCCTGTTCATCAGT+TGG 0.497177 2_1:+73385180 None:intergenic
CTTTATCAGTGAATGAATGA+TGG 0.507759 2_1:-73383750 Msa0223740:three_prime_UTR
AGAAACAAGGGTTGGTTGCA+GGG 0.508414 2_1:-73384869 Msa0223740:CDS
CTGCCTCTTCCAGGTGTCAG+AGG 0.510409 2_1:+73384775 None:intergenic
GAATAAGAAAATTCTATCAT+GGG 0.524623 2_1:+73383474 None:intergenic
TACAAACTCCTGGCCGATGT+AGG 0.525221 2_1:+73385071 None:intergenic
ACAAGCGGGAAAAGATTGTA+AGG 0.526019 2_1:-73384900 Msa0223740:CDS
CACACACATCCTCTGACACC+TGG 0.532917 2_1:-73384784 Msa0223740:CDS
TACAATAAGCTGCTGAAATG+TGG 0.534589 2_1:-73386131 Msa0223740:five_prime_UTR
CTCTCAAGATCAAGGCGTGA+TGG 0.535255 2_1:-73384976 Msa0223740:CDS
ACAAACTCCTGGCCGATGTA+GGG 0.537780 2_1:+73385072 None:intergenic
TTTCAGAATGCCTGACAAGC+GGG 0.539722 2_1:-73384914 Msa0223740:CDS
GACTAGTTCAGTCAATGTAC+AGG 0.545014 2_1:-73383570 Msa0223740:three_prime_UTR
CATCCTCTGACACCTGGAAG+AGG 0.555269 2_1:-73384778 Msa0223740:CDS
GACTCAAGATTCTTCTGGAG+TGG 0.558618 2_1:-73385148 Msa0223740:CDS
TAAGTAAGCTCTCAAGATCA+AGG 0.559347 2_1:-73384984 Msa0223740:CDS
CAAATTTACAAAATTAACCA+TGG 0.560215 2_1:+73383452 None:intergenic
TAAGGCAAAGGGCAGAAACA+AGG 0.561852 2_1:-73384882 Msa0223740:CDS
TCGAGAACTAACTCAACAGT+TGG 0.562574 2_1:-73383953 Msa0223740:CDS
TGACACCTGGAAGAGGCAGA+AGG 0.566441 2_1:-73384771 Msa0223740:CDS
AAATATAAATAATGCTACAC+AGG 0.567351 2_1:+73386158 None:intergenic
TGATGAACCCTACATCGGCC+AGG 0.568038 2_1:-73385079 Msa0223740:CDS
GGGAAAAGATTGTAAGGCAA+AGG 0.569600 2_1:-73384894 Msa0223740:CDS
GGAAAAGATTGTAAGGCAAA+GGG 0.570713 2_1:-73384893 Msa0223740:CDS
CAGCTTCGGATACAAACTCC+TGG 0.571675 2_1:+73385061 None:intergenic
GGACTGAGTTACAAGTTCAA+TGG 0.572522 2_1:+73383696 None:intergenic
CGATGTTACAGGAACTATTG+AGG 0.574679 2_1:+73385116 None:intergenic
GACACCTGGAAGAGGCAGAA+GGG 0.590498 2_1:-73384770 Msa0223740:CDS
TGTACTCATATAACAAGTCA+AGG 0.602934 2_1:+73383893 None:intergenic
GTGATGGATCTGTTATTGGG+CGG 0.611640 2_1:-73384960 Msa0223740:CDS
CAAAGGGCAGAAACAAGGGT+TGG 0.628129 2_1:-73384877 Msa0223740:CDS
AGCAAATGCTACTATTGGAG+AGG 0.632541 2_1:-73385253 Msa0223740:five_prime_UTR
GTTTCAGAATGCCTGACAAG+CGG 0.633841 2_1:-73384915 Msa0223740:CDS
GAGATTGGTGACTCCAGTAA+TGG 0.635105 2_1:-73385285 Msa0223740:five_prime_UTR
ACAATTGATGAACCCTACAT+CGG 0.643960 2_1:-73385084 Msa0223740:CDS
TGGTGACTCCAGTAATGGTG+AGG 0.657202 2_1:-73385280 Msa0223740:five_prime_UTR
AAGGCAAAGGGCAGAAACAA+GGG 0.671184 2_1:-73384881 Msa0223740:CDS
GCAGGGCAATGATTATGGTG+AGG 0.678028 2_1:-73384852 Msa0223740:CDS
GCACATAGTAGAGAGTGTGA+AGG 0.682029 2_1:-73383833 Msa0223740:CDS
ATTCACAAGAATGGACTCAG+AGG 0.720890 2_1:+73383543 None:intergenic
CTTGTTATATGAGTACATCG+AGG 0.731335 2_1:-73383887 Msa0223740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAATAGATTAATAAATTT+TGG + chr2_1:73383711-73383730 None:intergenic 10.0%
!!! TTTTTTTCTTATAAGAAATT+AGG - chr2_1:73383989-73384008 Msa0223740:intron 10.0%
!!! TTTTTTCTTATAAGAAATTA+GGG - chr2_1:73383990-73384009 Msa0223740:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385561-73385580 None:intergenic 100.0%
!!! TTCTTTTCTTTTTTTCATTT+AGG - chr2_1:73383805-73383824 Msa0223740:CDS 15.0%
!!! TTTTTTTCATTTAGGTTTTT+GGG - chr2_1:73383813-73383832 Msa0223740:CDS 15.0%
!! GGGAAATTATTATTAATAAT+CGG - chr2_1:73384016-73384035 Msa0223740:intron 15.0%
!!! TCTTATATCAAATTTTTTGT+TGG - chr2_1:73384302-73384321 Msa0223740:intron 15.0%
!!! TTTTAAATAAAGATTTGTAC+AGG + chr2_1:73384989-73385008 None:intergenic 15.0%
!!! AATTTTGTAAATTTGATTCA+TGG - chr2_1:73386179-73386198 Msa0223740:five_prime_UTR 15.0%
!! AAATATAAATAATGCTACAC+AGG + chr2_1:73383468-73383487 None:intergenic 20.0%
!!! TGCTTCTTTTAGTAATAAAT+AGG - chr2_1:73383541-73383560 Msa0223740:three_prime_UTR 20.0%
!! TTGGATTTGATAAAACTTAA+CGG + chr2_1:73383692-73383711 None:intergenic 20.0%
!! AAAATATGAAAATAACCATC+TGG - chr2_1:73383746-73383765 Msa0223740:three_prime_UTR 20.0%
!! GAAAAAAATTGACAATCTTT+AGG + chr2_1:73383788-73383807 None:intergenic 20.0%
!!! CTTTTTTTCATTTAGGTTTT+TGG - chr2_1:73383812-73383831 Msa0223740:CDS 20.0%
!!! AAATATTTAGTGTCATTCAT+AGG - chr2_1:73384069-73384088 Msa0223740:intron 20.0%
!!! AATATTTAGTGTCATTCATA+GGG - chr2_1:73384070-73384089 Msa0223740:intron 20.0%
!!! TAGTATTTAGTTTAAACCAT+AGG - chr2_1:73384145-73384164 Msa0223740:intron 20.0%
!!! AGTATTTAGTTTAAACCATA+GGG - chr2_1:73384146-73384165 Msa0223740:intron 20.0%
!!! AATTCCAAAATTATCCTTTT+TGG + chr2_1:73384175-73384194 None:intergenic 20.0%
!! AAGTGAAAAGATTAAATGAA+AGG - chr2_1:73385047-73385066 Msa0223740:CDS 20.0%
!! AAATAAAACATTGAAGTCTT+TGG + chr2_1:73385268-73385287 None:intergenic 20.0%
!! GAATAAGAAAATTCTATCAT+GGG + chr2_1:73386152-73386171 None:intergenic 20.0%
!! CAAATTTACAAAATTAACCA+TGG + chr2_1:73386174-73386193 None:intergenic 20.0%
! AACAAACAGAGAATACAATT+TGG - chr2_1:73383517-73383536 Msa0223740:three_prime_UTR 25.0%
! TGGTTATTACTGAGTTATAA+AGG + chr2_1:73383653-73383672 None:intergenic 25.0%
! AATCTTTAGGTAAAGCTTAA+TGG + chr2_1:73383775-73383794 None:intergenic 25.0%
!!! TTTAAGTTGACTGATCTTTA+TGG - chr2_1:73383851-73383870 Msa0223740:CDS 25.0%
! ATGCTAACTTAACTAGTAAT+CGG - chr2_1:73383952-73383971 Msa0223740:CDS 25.0%
!! GTTTCCAAAAAGGATAATTT+TGG - chr2_1:73384168-73384187 Msa0223740:intron 25.0%
! GATGGAAATAAAAAACCAAA+AGG - chr2_1:73385073-73385092 Msa0223740:CDS 25.0%
! AAAAAACTATGCCCATTTAA+GGG + chr2_1:73385099-73385118 None:intergenic 25.0%
! TAAAAAACTATGCCCATTTA+AGG + chr2_1:73385100-73385119 None:intergenic 25.0%
! TTTACAATGAAAAATCATCG+AGG - chr2_1:73385123-73385142 Msa0223740:CDS 25.0%
! CTGAAACCATTAGAATTTAA+AGG - chr2_1:73385151-73385170 Msa0223740:CDS 25.0%
! TGAGATCCTTTAAATTCTAA+TGG + chr2_1:73385160-73385179 None:intergenic 25.0%
!!! TCCATTTTAATTTATCTTCG+AGG - chr2_1:73385307-73385326 Msa0223740:intron 25.0%
! ACCTCGAAGATAAATTAAAA+TGG + chr2_1:73385311-73385330 None:intergenic 25.0%
! AATCCATACACATGAAAAAT+AGG - chr2_1:73385339-73385358 Msa0223740:intron 25.0%
!!! TTACCTATTTTTCATGTGTA+TGG + chr2_1:73385345-73385364 None:intergenic 25.0%
! AAAATAGGTAAAATTACTCC+CGG - chr2_1:73385354-73385373 Msa0223740:intron 25.0%
!! ATTTTGCCAGGTAAATATTT+TGG - chr2_1:73385465-73385484 Msa0223740:intron 25.0%
! AATTCTTGTTACATGTCTTT+GGG - chr2_1:73385526-73385545 Msa0223740:intron 25.0%
! AAAACAAATATGTAAGACGT+GGG + chr2_1:73385619-73385638 None:intergenic 25.0%
! AAAAACAAATATGTAAGACG+TGG + chr2_1:73385620-73385639 None:intergenic 25.0%
! CAATGGAATTCAATATTCAT+TGG - chr2_1:73385993-73386012 Msa0223740:intron 25.0%
! ATAGCATTAATTCACAAGAA+TGG + chr2_1:73386092-73386111 None:intergenic 25.0%
! GGAATAAGAAAATTCTATCA+TGG + chr2_1:73386153-73386172 None:intergenic 25.0%
!! GATAGAATTTTCTTATTCCA+TGG - chr2_1:73386154-73386173 Msa0223740:five_prime_UTR 25.0%
! TTTTTCTTCTATGTTTGAGC+TGG - chr2_1:73383598-73383617 Msa0223740:three_prime_UTR 30.0%
! TTTTCTTCTATGTTTGAGCT+GGG - chr2_1:73383599-73383618 Msa0223740:three_prime_UTR 30.0%
ATAACTCAGTAATAACCATC+TGG - chr2_1:73383655-73383674 Msa0223740:three_prime_UTR 30.0%
! GATTTTGTGCAAAGTCTTTT+TGG - chr2_1:73383922-73383941 Msa0223740:CDS 30.0%
TTCTTATAAGAAATTAGGGC+AGG - chr2_1:73383994-73384013 Msa0223740:intron 30.0%
TCTTATAAGAAATTAGGGCA+GGG - chr2_1:73383995-73384014 Msa0223740:intron 30.0%
!!! ATCGGTTTTATTTGTTGAAG+TGG - chr2_1:73384034-73384053 Msa0223740:intron 30.0%
!!! GTTTTATTTGTTGAAGTGGA+GGG - chr2_1:73384038-73384057 Msa0223740:intron 30.0%
!! ATTAGCAACTTTGACTTGTA+TGG - chr2_1:73384101-73384120 Msa0223740:intron 30.0%
AATATGACTCAAGATTCTTC+TGG - chr2_1:73384470-73384489 Msa0223740:intron 30.0%
ATGGTGAGGAAATTAAATTC+TGG - chr2_1:73384785-73384804 Msa0223740:CDS 30.0%
GGAAATTAAATTCTGGTCTA+TGG - chr2_1:73384792-73384811 Msa0223740:CDS 30.0%
!! TTTCTAGAACTGCAAATAAC+TGG + chr2_1:73384917-73384936 None:intergenic 30.0%
AAAGAGTGAAAACAGAGAAA+GGG + chr2_1:73384966-73384985 None:intergenic 30.0%
TGAAACATAGTAAAACAGTG+TGG - chr2_1:73385012-73385031 Msa0223740:CDS 30.0%
AGATTAAATGAAAGGAGAGA+TGG - chr2_1:73385055-73385074 Msa0223740:CDS 30.0%
AAATAGGTAAAATTACTCCC+GGG - chr2_1:73385355-73385374 Msa0223740:intron 30.0%
! ATGCACTTAACTTAGAGTTT+TGG - chr2_1:73385383-73385402 Msa0223740:intron 30.0%
CAATTCTTGTTACATGTCTT+TGG - chr2_1:73385525-73385544 Msa0223740:intron 30.0%
AAACAAATATGTAAGACGTG+GGG + chr2_1:73385618-73385637 None:intergenic 30.0%
! TTTTTATGCAATTTCCAGAG+TGG - chr2_1:73385635-73385654 Msa0223740:intron 30.0%
TGTACTCATATAACAAGTCA+AGG + chr2_1:73385733-73385752 None:intergenic 30.0%
CTTTATCAGTGAATGAATGA+TGG - chr2_1:73385873-73385892 Msa0223740:intron 30.0%
!! GTTCAGTTTGTTAAGTTCAA+TGG - chr2_1:73385976-73385995 Msa0223740:intron 30.0%
TACAATAAGCTGCTGAAATG+TGG - chr2_1:73383492-73383511 Msa0223740:three_prime_UTR 35.0%
! GTAATAACCATCTGGAATTC+TGG - chr2_1:73383663-73383682 Msa0223740:three_prime_UTR 35.0%
TTTGCACAAAATCAAAGCGA+AGG + chr2_1:73383915-73383934 None:intergenic 35.0%
CTTATAAGAAATTAGGGCAG+GGG - chr2_1:73383996-73384015 Msa0223740:intron 35.0%
!!! GGTTTTATTTGTTGAAGTGG+AGG - chr2_1:73384037-73384056 Msa0223740:intron 35.0%
CAAGTCAAAGTTGCTAATAC+AGG + chr2_1:73384099-73384118 None:intergenic 35.0%
AAACCATAGGGTTTCCAAAA+AGG - chr2_1:73384158-73384177 Msa0223740:intron 35.0%
!! TATCCTTTTTGGAAACCCTA+TGG + chr2_1:73384164-73384183 None:intergenic 35.0%
!!! CAAATTTTTTGTTGGTGCAG+TGG - chr2_1:73384310-73384329 Msa0223740:intron 35.0%
GCATTAGCAAATGCTACTAT+TGG - chr2_1:73384365-73384384 Msa0223740:intron 35.0%
ACAATTGATGAACCCTACAT+CGG - chr2_1:73384539-73384558 Msa0223740:intron 35.0%
AATTCATATGCTACACGTGT+TGG - chr2_1:73384602-73384621 Msa0223740:intron 35.0%
TAAGTAAGCTCTCAAGATCA+AGG - chr2_1:73384639-73384658 Msa0223740:intron 35.0%
! GCTCTAGTTTGTAACAAAGA+AGG - chr2_1:73384686-73384705 Msa0223740:intron 35.0%
GGAAAAGATTGTAAGGCAAA+GGG - chr2_1:73384730-73384749 Msa0223740:intron 35.0%
CTTCGTTTATGAGCAATATC+CGG - chr2_1:73384877-73384896 Msa0223740:CDS 35.0%
!! TGCAGTTCTAGAAAAGTGTA+TGG - chr2_1:73384923-73384942 Msa0223740:CDS 35.0%
! AGAAAAGTGTATGGTCTGTT+TGG - chr2_1:73384932-73384951 Msa0223740:CDS 35.0%
AAGAGTGAAAACAGAGAAAG+GGG + chr2_1:73384965-73384984 None:intergenic 35.0%
GAAAGAGTGAAAACAGAGAA+AGG + chr2_1:73384967-73384986 None:intergenic 35.0%
AAAACCAAAAGGCCCTTAAA+TGG - chr2_1:73385084-73385103 Msa0223740:CDS 35.0%
AAACCAAAAGGCCCTTAAAT+GGG - chr2_1:73385085-73385104 Msa0223740:CDS 35.0%
AATAGGTAAAATTACTCCCG+GGG - chr2_1:73385356-73385375 Msa0223740:intron 35.0%
!! GAAACTCGAAGTATCGATTT+GGG + chr2_1:73385438-73385457 None:intergenic 35.0%
!! AGAAACTCGAAGTATCGATT+TGG + chr2_1:73385439-73385458 None:intergenic 35.0%
! AAATCGATACTTCGAGTTTC+TGG - chr2_1:73385438-73385457 Msa0223740:intron 35.0%
CTGTTGCCAAAATATTTACC+TGG + chr2_1:73385474-73385493 None:intergenic 35.0%
AACAAATATGTAAGACGTGG+GGG + chr2_1:73385617-73385636 None:intergenic 35.0%
! CAAGTCAAGGTTCCTTTTAT+AGG + chr2_1:73385720-73385739 None:intergenic 35.0%
! CTTGTTATATGAGTACATCG+AGG - chr2_1:73385736-73385755 Msa0223740:intron 35.0%
! GTGCTGTATCTTCTTTGAAA+CGG + chr2_1:73385774-73385793 None:intergenic 35.0%
ACAAGAGAGTCAGTTTCAAT+TGG - chr2_1:73385829-73385848 Msa0223740:intron 35.0%
AAAGCTTAATGGCATCCAGA+TGG + chr2_1:73383764-73383783 None:intergenic 40.0%
AGCAAATGCTACTATTGGAG+AGG - chr2_1:73384370-73384389 Msa0223740:intron 40.0%
TTTCGATCCAACTGATGAAC+AGG - chr2_1:73384436-73384455 Msa0223740:intron 40.0%
TCTTGATCCTGTTCATCAGT+TGG + chr2_1:73384446-73384465 None:intergenic 40.0%
CAGGAACTATTGAGGTGATT+TGG + chr2_1:73384502-73384521 None:intergenic 40.0%
CGATGTTACAGGAACTATTG+AGG + chr2_1:73384510-73384529 None:intergenic 40.0%
GTTCTCATAAGCGATGTTAC+AGG + chr2_1:73384521-73384540 None:intergenic 40.0%
AAATGCATGTGCTTCAGCTT+CGG + chr2_1:73384579-73384598 None:intergenic 40.0%
ACAAGCGGGAAAAGATTGTA+AGG - chr2_1:73384723-73384742 Msa0223740:intron 40.0%
GGGAAAAGATTGTAAGGCAA+AGG - chr2_1:73384729-73384748 Msa0223740:intron 40.0%
ACTGGTAGAACATGACTAAC+CGG + chr2_1:73384899-73384918 None:intergenic 40.0%
ATAGGTAAAATTACTCCCGG+GGG - chr2_1:73385357-73385376 Msa0223740:intron 40.0%
!!! GTTTCTGGAGTAATTTTGCC+AGG - chr2_1:73385453-73385472 Msa0223740:intron 40.0%
ACAAATATGTAAGACGTGGG+GGG + chr2_1:73385616-73385635 None:intergenic 40.0%
TCGAGAACTAACTCAACAGT+TGG - chr2_1:73385670-73385689 Msa0223740:intron 40.0%
AGCGAGCTGAAACCTATAAA+AGG - chr2_1:73385705-73385724 Msa0223740:intron 40.0%
GGACTGAGTTACAAGTTCAA+TGG + chr2_1:73385930-73385949 None:intergenic 40.0%
TTGTAACTCAGTCCAGCTTT+AGG - chr2_1:73385936-73385955 Msa0223740:intron 40.0%
! GACTAGTTCAGTCAATGTAC+AGG - chr2_1:73386053-73386072 Msa0223740:intron 40.0%
! ATTCACAAGAATGGACTCAG+AGG + chr2_1:73386083-73386102 None:intergenic 40.0%
! GAGATTGGTGACTCCAGTAA+TGG - chr2_1:73384338-73384357 Msa0223740:intron 45.0%
TGCTAATGCCTCACCATTAC+TGG + chr2_1:73384354-73384373 None:intergenic 45.0%
! GACTCAAGATTCTTCTGGAG+TGG - chr2_1:73384475-73384494 Msa0223740:intron 45.0%
!! AGGCGTGATGGATCTGTTAT+TGG - chr2_1:73384659-73384678 Msa0223740:intron 45.0%
!! GGCGTGATGGATCTGTTATT+GGG - chr2_1:73384660-73384679 Msa0223740:intron 45.0%
!! GTGATGGATCTGTTATTGGG+CGG - chr2_1:73384663-73384682 Msa0223740:intron 45.0%
! TGATGGATCTGTTATTGGGC+GGG - chr2_1:73384664-73384683 Msa0223740:intron 45.0%
GTTTCAGAATGCCTGACAAG+CGG - chr2_1:73384708-73384727 Msa0223740:intron 45.0%
TTTCAGAATGCCTGACAAGC+GGG - chr2_1:73384709-73384728 Msa0223740:intron 45.0%
! ACAATCTTTTCCCGCTTGTC+AGG + chr2_1:73384722-73384741 None:intergenic 45.0%
TAAGGCAAAGGGCAGAAACA+AGG - chr2_1:73384741-73384760 Msa0223740:intron 45.0%
AAGGCAAAGGGCAGAAACAA+GGG - chr2_1:73384742-73384761 Msa0223740:intron 45.0%
!! AGAAACAAGGGTTGGTTGCA+GGG - chr2_1:73384754-73384773 Msa0223740:CDS 45.0%
TGGTTGCAGGGCAATGATTA+TGG - chr2_1:73384766-73384785 Msa0223740:CDS 45.0%
! ATGCCCATTTAAGGGCCTTT+TGG + chr2_1:73385091-73385110 None:intergenic 45.0%
AAGTTAAGTGCATAGACCCC+CGG + chr2_1:73385376-73385395 None:intergenic 45.0%
AAATATGTAAGACGTGGGGG+GGG + chr2_1:73385614-73385633 None:intergenic 45.0%
CAAATATGTAAGACGTGGGG+GGG + chr2_1:73385615-73385634 None:intergenic 45.0%
! GCACATAGTAGAGAGTGTGA+AGG - chr2_1:73385790-73385809 Msa0223740:intron 45.0%
! AGTAGAGAGTGTGAAGGAGA+TGG - chr2_1:73385796-73385815 Msa0223740:intron 45.0%
AACTCACTTGCACCTAAAGC+TGG + chr2_1:73385951-73385970 None:intergenic 45.0%
ACGGCATCCAGAATTCCAGA+TGG + chr2_1:73383673-73383692 None:intergenic 50.0%
CCGAGTGATACTCTACAGAG+CGG + chr2_1:73384273-73384292 None:intergenic 50.0%
! CCGCTCTGTAGAGTATCACT+CGG - chr2_1:73384270-73384289 Msa0223740:intron 50.0%
GGTGCAGTGGAGATTGAGAT+TGG - chr2_1:73384323-73384342 Msa0223740:intron 50.0%
TGGTGACTCCAGTAATGGTG+AGG - chr2_1:73384343-73384362 Msa0223740:intron 50.0%
ACAAACTCCTGGCCGATGTA+GGG + chr2_1:73384554-73384573 None:intergenic 50.0%
TACAAACTCCTGGCCGATGT+AGG + chr2_1:73384555-73384574 None:intergenic 50.0%
CAGCTTCGGATACAAACTCC+TGG + chr2_1:73384565-73384584 None:intergenic 50.0%
CTCTCAAGATCAAGGCGTGA+TGG - chr2_1:73384647-73384666 Msa0223740:intron 50.0%
CAAAGGGCAGAAACAAGGGT+TGG - chr2_1:73384746-73384765 Msa0223740:intron 50.0%
!! CAGAAACAAGGGTTGGTTGC+AGG - chr2_1:73384753-73384772 Msa0223740:CDS 50.0%
GCAGGGCAATGATTATGGTG+AGG - chr2_1:73384771-73384790 Msa0223740:CDS 50.0%
AGTTAAGTGCATAGACCCCC+GGG + chr2_1:73385375-73385394 None:intergenic 50.0%
TGATGAACCCTACATCGGCC+AGG - chr2_1:73384544-73384563 Msa0223740:intron 55.0%
CACACACATCCTCTGACACC+TGG - chr2_1:73384839-73384858 Msa0223740:CDS 55.0%
CATCCTCTGACACCTGGAAG+AGG - chr2_1:73384845-73384864 Msa0223740:CDS 55.0%
TGACACCTGGAAGAGGCAGA+AGG - chr2_1:73384852-73384871 Msa0223740:CDS 55.0%
GACACCTGGAAGAGGCAGAA+GGG - chr2_1:73384853-73384872 Msa0223740:CDS 55.0%
AAGTCCCTTCTGCCTCTTCC+AGG + chr2_1:73384860-73384879 None:intergenic 55.0%
GAACTCTGTCGTGTCCACTC+TGG + chr2_1:73385652-73385671 None:intergenic 55.0%
CTGCCTCTTCCAGGTGTCAG+AGG + chr2_1:73384851-73384870 None:intergenic 60.0%
ATGTAAGACGTGGGGGGGGT+GGG + chr2_1:73385610-73385629 None:intergenic 60.0%
TATGTAAGACGTGGGGGGGG+TGG + chr2_1:73385611-73385630 None:intergenic 60.0%
TGTAAGACGTGGGGGGGGTG+GGG + chr2_1:73385609-73385628 None:intergenic 65.0%
TAAGACGTGGGGGGGGTGGG+GGG + chr2_1:73385607-73385626 None:intergenic 70.0%
GTAAGACGTGGGGGGGGTGG+GGG + chr2_1:73385608-73385627 None:intergenic 70.0%
GGGGGGGGGGGGCTGAAAAG+GGG + chr2_1:73385553-73385572 None:intergenic 75.0%
GGGGGGGGGGGGGCTGAAAA+GGG + chr2_1:73385554-73385573 None:intergenic 75.0%
AAGACGTGGGGGGGGTGGGG+GGG + chr2_1:73385606-73385625 None:intergenic 75.0%
! GGGGGGGGGGGGGGCTGAAA+AGG + chr2_1:73385555-73385574 None:intergenic 80.0%
! AGACGTGGGGGGGGTGGGGG+GGG + chr2_1:73385605-73385624 None:intergenic 80.0%
! ACGTGGGGGGGGTGGGGGGG+GGG + chr2_1:73385603-73385622 None:intergenic 85.0%
! GACGTGGGGGGGGTGGGGGG+GGG + chr2_1:73385604-73385623 None:intergenic 85.0%
! TGGGGGGGGTGGGGGGGGGG+GGG + chr2_1:73385600-73385619 None:intergenic 90.0%
! GTGGGGGGGGTGGGGGGGGG+GGG + chr2_1:73385601-73385620 None:intergenic 90.0%
! CGTGGGGGGGGTGGGGGGGG+GGG + chr2_1:73385602-73385621 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385591-73385610 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385592-73385611 None:intergenic 95.0%
! GGTGGGGGGGGGGGGGGGGG+GGG + chr2_1:73385593-73385612 None:intergenic 95.0%
! GGGTGGGGGGGGGGGGGGGG+GGG + chr2_1:73385594-73385613 None:intergenic 95.0%
! GGGGTGGGGGGGGGGGGGGG+GGG + chr2_1:73385595-73385614 None:intergenic 95.0%
! GGGGGTGGGGGGGGGGGGGG+GGG + chr2_1:73385596-73385615 None:intergenic 95.0%
! GGGGGGTGGGGGGGGGGGGG+GGG + chr2_1:73385597-73385616 None:intergenic 95.0%
! GGGGGGGTGGGGGGGGGGGG+GGG + chr2_1:73385598-73385617 None:intergenic 95.0%
! GGGGGGGGTGGGGGGGGGGG+GGG + chr2_1:73385599-73385618 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 73383441 73386204 73383441 ID=Msa0223740;Name=Msa0223740
chr2_1 mRNA 73383441 73386204 73383441 ID=Msa0223740-mRNA-1;Parent=Msa0223740;Name=Msa0223740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=265|1|1|1|0.5|0.66|3|342|211
chr2_1 exon 73383441 73383992 73383441 ID=Msa0223740-mRNA-1:exon:21558;Parent=Msa0223740-mRNA-1
chr2_1 exon 73384747 73385315 73384747 ID=Msa0223740-mRNA-1:exon:21557;Parent=Msa0223740-mRNA-1
chr2_1 exon 73386083 73386204 73386083 ID=Msa0223740-mRNA-1:exon:21556;Parent=Msa0223740-mRNA-1
chr2_1 five_prime_UTR 73386083 73386204 73386083 ID=Msa0223740-mRNA-1:five_prime_utr;Parent=Msa0223740-mRNA-1
chr2_1 five_prime_UTR 73385173 73385315 73385173 ID=Msa0223740-mRNA-1:five_prime_utr;Parent=Msa0223740-mRNA-1
chr2_1 CDS 73384747 73385172 73384747 ID=Msa0223740-mRNA-1:cds;Parent=Msa0223740-mRNA-1
chr2_1 CDS 73383783 73383992 73383783 ID=Msa0223740-mRNA-1:cds;Parent=Msa0223740-mRNA-1
chr2_1 three_prime_UTR 73383441 73383782 73383441 ID=Msa0223740-mRNA-1:three_prime_utr;Parent=Msa0223740-mRNA-1
Gene Sequence

>Msa0223740

ATGACTCAAGATTCTTCTGGAGTGGACCAAATCACCTCAATAGTTCCTGTAACATCGCTTATGAGAACAATTGATGAACCCTACATCGGCCAGGAGTTTGTATCCGAAGCTGAAGCACATGCATTTTATAATTCATATGCTACACGTGTTGGATTCGTCATACGTGTAAGTAAGCTCTCAAGATCAAGGCGTGATGGATCTGTTATTGGGCGGGCTCTAGTTTGTAACAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAATTAAATTCTGGTCTATGGTCTATAACAAAGTTTGTAAAAGAGCACACACATCCTCTGACACCTGGAAGAGGCAGAAGGGACTTCGTTTATGAGCAATATCCGAGTGGACACGACAGAGTTCGAGAACTAACTCAACAGTTGGCTATAGAGAAAAAGCGAGCTGAAACCTATAAAAGGAACCTTGACTTGTTATATGAGTACATCGAGGAGCATAATGAAGCCGTTTCAAAGAAGATACAGCACATAGTAGAGAGTGTGAAGGAGATGGAAGCTAAAGAACAAGAGAGTCAGTTTCAATTGGCTGTTATCTAG

Protein sequence

>Msa0223740

MTQDSSGVDQITSIVPVTSLMRTIDEPYIGQEFVSEAEAHAFYNSYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVRELTQQLAIEKKRAETYKRNLDLLYEYIEEHNEAVSKKIQHIVESVKEMEAKEQESQFQLAVI*