AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970030 MtrunA17_Chr6g0448891 96.032 126 5 0 1 126 1 126 5.72e-71 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970030 AT1G08580.1 53.261 92 42 1 1 92 1 91 2.94e-27 97.8

Find 38 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCATAAAATATTATTTC+TGG 0.157938 6_4:-1464974 None:intergenic
TAAGGTTCAGAGAGTGAATT+AGG 0.175801 6_4:-1467486 Msa0970030:five_prime_UTR
CTTTGTCCTTTACTTTATAT+TGG 0.277243 6_4:-1465041 Msa0970030:three_prime_UTR
CTTTCTGATCTTAAGCTTGC+CGG 0.286439 6_4:+1467360 None:intergenic
TAACCTTGAATTGAGTGTTT+TGG 0.289455 6_4:-1465242 Msa0970030:three_prime_UTR
AGATGCAGCACTCTTATCTT+TGG 0.304089 6_4:+1467001 None:intergenic
AAATCAGTGAGCTTCCTTCT+AGG 0.306730 6_4:+1465118 None:intergenic
GAGCTTGCGCTTGCGTTTGC+CGG 0.309830 6_4:+1467321 None:intergenic
CGTTTGCCGGATAGATTAAC+AGG 0.331339 6_4:+1467334 None:intergenic
CTTCATCTAACATTTGATAA+AGG 0.333342 6_4:+1465085 None:intergenic
CTTCTATCCTCATACTATAA+AGG 0.366513 6_4:+1465292 None:intergenic
GAGCATAAAATATTATTTCT+GGG 0.417415 6_4:-1464973 None:intergenic
ACCCCAAAACACTCAATTCA+AGG 0.443624 6_4:+1465239 None:intergenic
AAGGTTCAGAGAGTGAATTA+GGG 0.459949 6_4:-1467485 Msa0970030:five_prime_UTR
AAGGAAATCAAATTAGCATA+TGG 0.462611 6_4:-1465015 Msa0970030:three_prime_UTR
AGTAAAGGACAAAGATAAAC+CGG 0.475592 6_4:+1465050 None:intergenic
ATCTTAAGCTTGCCGGTGGT+AGG 0.480726 6_4:+1467367 None:intergenic
ATTGTTGTCATATTCCTAGA+AGG 0.483581 6_4:-1465132 Msa0970030:three_prime_UTR
AAGCAGCCTGTTAATCTATC+CGG 0.484871 6_4:-1467340 Msa0970030:CDS
TTTGAGGGAGGAGGCAGGGA+TGG 0.490322 6_4:-1467461 Msa0970030:exon
CTTTACTTTATATTGGTGAA+AGG 0.493663 6_4:-1465034 Msa0970030:three_prime_UTR
CTTTCACCAATATAAAGTAA+AGG 0.505194 6_4:+1465035 None:intergenic
CTTGAAACTTAAACAGCTCA+AGG 0.522552 6_4:-1466949 Msa0970030:CDS
TCAGTTGAAACTTCAGCAGC+AGG 0.532061 6_4:+1465343 None:intergenic
TCTTAAGCTTGCCGGTGGTA+GGG 0.536083 6_4:+1467368 None:intergenic
TAGCATGGAAGATGTTCAAA+TGG 0.542838 6_4:-1467150 Msa0970030:CDS
CTTAAACAGCTCAAGGGCAA+AGG 0.565635 6_4:-1466942 Msa0970030:intron
GAGAGGAAGAGATTGATTCA+CGG 0.579715 6_4:-1467394 Msa0970030:CDS
AGAGAGTGGCTTGATTAGCA+TGG 0.596496 6_4:-1467165 Msa0970030:CDS
GATGAAGTAGTATATTGCAC+CGG 0.608910 6_4:-1465069 Msa0970030:three_prime_UTR
AGCGCAAGCTCTTCAAACAA+TGG 0.614028 6_4:-1467309 Msa0970030:CDS
TGAAGTTTCAACTGATGCAA+TGG 0.630524 6_4:-1465335 Msa0970030:CDS
GTTCAAATGGCTGTTGCTGA+AGG 0.631234 6_4:-1467137 Msa0970030:intron
TTATAGTATGAGGATAGAAG+AGG 0.639645 6_4:-1465289 Msa0970030:three_prime_UTR
AGTTTCAACTGATGCAATGG+TGG 0.646685 6_4:-1465332 Msa0970030:CDS
GAAGAGCTCTAGTTGCTGAG+AGG 0.671480 6_4:-1467411 Msa0970030:CDS
TTGAAACTTAAACAGCTCAA+GGG 0.676667 6_4:-1466948 Msa0970030:CDS
TCTGATCTTAAGCTTGCCGG+TGG 0.687271 6_4:+1467363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATATAAATAAAA+AGG + chr6_4:1467267-1467286 None:intergenic 0.0%
!!! TTTTTATTTATATTTTTTTA+TGG - chr6_4:1467266-1467285 Msa0970030:intron 0.0%
!! ATATAATAATATAATGTTTG+TGG - chr6_4:1465903-1465922 Msa0970030:intron 10.0%
!! TAAATTTCACTTGAAAAAAA+AGG - chr6_4:1465489-1465508 Msa0970030:intron 15.0%
!! AAATTTCACTTGAAAAAAAA+GGG - chr6_4:1465490-1465509 Msa0970030:intron 15.0%
!!! AAAACTAATTTCTAGTTATA+AGG + chr6_4:1465753-1465772 None:intergenic 15.0%
!!! ATCTGCTTTTAAATATATTT+TGG - chr6_4:1465991-1466010 Msa0970030:intron 15.0%
!!! TTTTAAATATATTTTGGAGT+TGG - chr6_4:1465997-1466016 Msa0970030:intron 15.0%
!!! AGTTGATTTATTTTTTTAAG+TGG - chr6_4:1466098-1466117 Msa0970030:intron 15.0%
!! ACATATAATTCAAAAAGAAA+GGG + chr6_4:1466580-1466599 None:intergenic 15.0%
!! AACATATAATTCAAAAAGAA+AGG + chr6_4:1466581-1466600 None:intergenic 15.0%
!!! ATATTTTGTAAACAATTTGA+TGG + chr6_4:1467030-1467049 None:intergenic 15.0%
!!! ATTTTTTTATGGTAAAAGAA+TGG - chr6_4:1467277-1467296 Msa0970030:intron 15.0%
!! TAATAATATAATGTTTGTGG+TGG - chr6_4:1465906-1465925 Msa0970030:intron 20.0%
!!! ATTTTTTTAAGTGGTATCTT+TGG - chr6_4:1466107-1466126 Msa0970030:intron 20.0%
!! TTAAAATGATTGAAAGATCT+AGG + chr6_4:1466722-1466741 None:intergenic 20.0%
!!! TTTTGTATAAATATGTCTAC+TGG + chr6_4:1466823-1466842 None:intergenic 20.0%
!!! TTTCACTTTCAATTTGATTT+TGG + chr6_4:1466851-1466870 None:intergenic 20.0%
!! AAATAAAACCTGTTACTATT+TGG + chr6_4:1466883-1466902 None:intergenic 20.0%
!!! ATGTTTTGAATATAGACATA+TGG - chr6_4:1466927-1466946 Msa0970030:intron 20.0%
!!! TGTTTTGAATATAGACATAT+GGG - chr6_4:1466928-1466947 Msa0970030:intron 20.0%
!!! ATTTTTTGAATTTCTTGTTG+TGG - chr6_4:1466985-1467004 Msa0970030:CDS 20.0%
!!! TTCACTTTTTGATTAACTGA+AGG - chr6_4:1465258-1465277 Msa0970030:three_prime_UTR 25.0%
! GGAAACTGAAATTCATTTAA+GGG + chr6_4:1465369-1465388 None:intergenic 25.0%
! AGGAAACTGAAATTCATTTA+AGG + chr6_4:1465370-1465389 None:intergenic 25.0%
! AAAAGAGCTCATTTATTGTT+TGG - chr6_4:1465420-1465439 Msa0970030:intron 25.0%
!!! ATTTTGACTACCTTGATTAT+TGG + chr6_4:1465793-1465812 None:intergenic 25.0%
! TCAAAATTGAGATTCTATCT+AGG - chr6_4:1465806-1465825 Msa0970030:intron 25.0%
! CAAAATTGAGATTCTATCTA+GGG - chr6_4:1465807-1465826 Msa0970030:intron 25.0%
!! CTTATCAATTGTTGTTGATA+AGG - chr6_4:1465932-1465951 Msa0970030:intron 25.0%
! TTCAAAACAACGATTAATCT+AGG - chr6_4:1466150-1466169 Msa0970030:intron 25.0%
!!! GATTTTTGACTATCAAAACA+AGG + chr6_4:1466257-1466276 None:intergenic 25.0%
! TAGCCATAAACATTAGAATA+GGG + chr6_4:1466354-1466373 None:intergenic 25.0%
! TTAGCCATAAACATTAGAAT+AGG + chr6_4:1466355-1466374 None:intergenic 25.0%
! AAAAAGAAAATGCAGAAACT+AGG - chr6_4:1466431-1466450 Msa0970030:intron 25.0%
!!! ATTCACTTTTAAGATTGTAG+TGG - chr6_4:1466767-1466786 Msa0970030:intron 25.0%
! CTTCATCTAACATTTGATAA+AGG + chr6_4:1467380-1467399 None:intergenic 25.0%
! CTTTGTCCTTTACTTTATAT+TGG - chr6_4:1467421-1467440 Msa0970030:CDS 25.0%
! CTTTCACCAATATAAAGTAA+AGG + chr6_4:1467430-1467449 None:intergenic 25.0%
! CTTTACTTTATATTGGTGAA+AGG - chr6_4:1467428-1467447 Msa0970030:CDS 25.0%
! AAGGAAATCAAATTAGCATA+TGG - chr6_4:1467447-1467466 Msa0970030:exon 25.0%
TTAACTGAAGGAACAAAAAG+AGG - chr6_4:1465270-1465289 Msa0970030:three_prime_UTR 30.0%
! GAGCTCTTTTGTTAAACTAA+AGG + chr6_4:1465410-1465429 None:intergenic 30.0%
TTGAAACTTAAACAGCTCAA+GGG - chr6_4:1465514-1465533 Msa0970030:intron 30.0%
!!! GGGCAAAGGTAATTTTTTTT+TGG - chr6_4:1465534-1465553 Msa0970030:intron 30.0%
!!! TTTTGGTTCTGTTTTGCATT+TGG - chr6_4:1465551-1465570 Msa0970030:intron 30.0%
AGGACTCAATTGTAAATCAT+GGG - chr6_4:1465837-1465856 Msa0970030:intron 30.0%
TAATATAATGTTTGTGGTGG+AGG - chr6_4:1465909-1465928 Msa0970030:intron 30.0%
TGTGATATCTAAATGAACGA+GGG + chr6_4:1466032-1466051 None:intergenic 30.0%
ATGTGATATCTAAATGAACG+AGG + chr6_4:1466033-1466052 None:intergenic 30.0%
ATATCACATGATATAGCCAA+GGG - chr6_4:1466044-1466063 Msa0970030:intron 30.0%
! AACGATTAATCTAGGATTCT+TGG - chr6_4:1466158-1466177 Msa0970030:intron 30.0%
GAGAATAAATCTGTTACAGA+GGG + chr6_4:1466558-1466577 None:intergenic 30.0%
! CTGTTACTATTTGGTTGATA+AGG + chr6_4:1466874-1466893 None:intergenic 30.0%
CTTATCAACCAAATAGTAAC+AGG - chr6_4:1466872-1466891 Msa0970030:intron 30.0%
CTGCGTAGTTAACTTATAAT+TGG - chr6_4:1467051-1467070 Msa0970030:intron 30.0%
! CTTATAATTGGTGTTTGTTG+TGG - chr6_4:1467063-1467082 Msa0970030:intron 30.0%
! AGGAACATCAGATTTTCTTT+TGG + chr6_4:1467102-1467121 None:intergenic 30.0%
! GTTTTCTCCTTTATAGTATG+AGG - chr6_4:1467163-1467182 Msa0970030:CDS 30.0%
CTTCTATCCTCATACTATAA+AGG + chr6_4:1467173-1467192 None:intergenic 30.0%
TTATAGTATGAGGATAGAAG+AGG - chr6_4:1467173-1467192 Msa0970030:CDS 30.0%
! TAACCTTGAATTGAGTGTTT+TGG - chr6_4:1467220-1467239 Msa0970030:intron 30.0%
! AACCTTGAATTGAGTGTTTT+GGG - chr6_4:1467221-1467240 Msa0970030:intron 30.0%
ATTGTTGTCATATTCCTAGA+AGG - chr6_4:1467330-1467349 Msa0970030:CDS 30.0%
AGTAAAGGACAAAGATAAAC+CGG + chr6_4:1467415-1467434 None:intergenic 30.0%
TAAGGTTCAGAGAGTGAATT+AGG - chr6_4:1464976-1464995 Msa0970030:three_prime_UTR 35.0%
AAGGTTCAGAGAGTGAATTA+GGG - chr6_4:1464977-1464996 Msa0970030:three_prime_UTR 35.0%
!! AGAGTGAATTAGGGTTTTGA+GGG - chr6_4:1464986-1465005 Msa0970030:three_prime_UTR 35.0%
TAGCATGGAAGATGTTCAAA+TGG - chr6_4:1465312-1465331 Msa0970030:exon 35.0%
!!! TATTGTTTGGTTTTGTGAGC+AGG - chr6_4:1465433-1465452 Msa0970030:intron 35.0%
!!! ATTGTTTGGTTTTGTGAGCA+GGG - chr6_4:1465434-1465453 Msa0970030:intron 35.0%
CTTGAAACTTAAACAGCTCA+AGG - chr6_4:1465513-1465532 Msa0970030:intron 35.0%
AAGGAAATTTGAATCAAGCC+AGG + chr6_4:1465734-1465753 None:intergenic 35.0%
! TGTTTGCTGACCAATAATCA+AGG - chr6_4:1465780-1465799 Msa0970030:intron 35.0%
GAGGACTCAATTGTAAATCA+TGG - chr6_4:1465836-1465855 Msa0970030:intron 35.0%
GATATCACATGATATAGCCA+AGG - chr6_4:1466043-1466062 Msa0970030:intron 35.0%
TATCACATGATATAGCCAAG+GGG - chr6_4:1466045-1466064 Msa0970030:intron 35.0%
!! GGGAAGTGTCAATGTTAATT+TGG - chr6_4:1466187-1466206 Msa0970030:intron 35.0%
AACATTAGAATAGGGACCAA+AGG + chr6_4:1466346-1466365 None:intergenic 35.0%
GGTCCCTATTCTAATGTTTA+TGG - chr6_4:1466348-1466367 Msa0970030:intron 35.0%
TATGGCTAAGATTGCACATT+TGG - chr6_4:1466366-1466385 Msa0970030:intron 35.0%
CTATACGCTGAAACTGAAAA+TGG - chr6_4:1466496-1466515 Msa0970030:intron 35.0%
GGAGAATAAATCTGTTACAG+AGG + chr6_4:1466559-1466578 None:intergenic 35.0%
AGTAGATTTCAGCTTCTCAT+TGG - chr6_4:1466686-1466705 Msa0970030:intron 35.0%
!! TCTACTGGTTCTACATGTTA+TGG + chr6_4:1466808-1466827 None:intergenic 35.0%
TGAAGTTTCAACTGATGCAA+TGG - chr6_4:1467127-1467146 Msa0970030:intron 35.0%
TAGAAGAGGCAAAAATGAGA+TGG - chr6_4:1467187-1467206 Msa0970030:intron 35.0%
! ACCTTGAATTGAGTGTTTTG+GGG - chr6_4:1467222-1467241 Msa0970030:intron 35.0%
GATGAAGTAGTATATTGCAC+CGG - chr6_4:1467393-1467412 Msa0970030:CDS 35.0%
! GAGAGTGAATTAGGGTTTTG+AGG - chr6_4:1464985-1465004 Msa0970030:three_prime_UTR 40.0%
! GAGAGGAAGAGATTGATTCA+CGG - chr6_4:1465068-1465087 Msa0970030:three_prime_UTR 40.0%
CTTTCTGATCTTAAGCTTGC+CGG + chr6_4:1465105-1465124 None:intergenic 40.0%
AAGCAGCCTGTTAATCTATC+CGG - chr6_4:1465122-1465141 Msa0970030:three_prime_UTR 40.0%
!! TTTAAGGGATTGATAGCGCA+CGG + chr6_4:1465354-1465373 None:intergenic 40.0%
!!! TTGTTTGGTTTTGTGAGCAG+GGG - chr6_4:1465435-1465454 Msa0970030:intron 40.0%
AGATGCAGCACTCTTATCTT+TGG + chr6_4:1465464-1465483 None:intergenic 40.0%
!! GAGTTATGAAAGCACCGATA+TGG - chr6_4:1465577-1465596 Msa0970030:intron 40.0%
CTACATAGATTGAGTCTACC+TGG - chr6_4:1465713-1465732 Msa0970030:intron 40.0%
! ATTCTATCTAGGGTCAAGAG+AGG - chr6_4:1465817-1465836 Msa0970030:intron 40.0%
CATGGGATTGTAACATAGCA+TGG - chr6_4:1465854-1465873 Msa0970030:intron 40.0%
! AATCTAGGATTCTTGGATCG+AGG - chr6_4:1466165-1466184 Msa0970030:intron 40.0%
! ATCTAGGATTCTTGGATCGA+GGG - chr6_4:1466166-1466185 Msa0970030:intron 40.0%
CCATCACTCTTGAAGACTAA+TGG + chr6_4:1466286-1466305 None:intergenic 40.0%
!! CCATTAGTCTTCAAGAGTGA+TGG - chr6_4:1466283-1466302 Msa0970030:intron 40.0%
! TTAGTCTTCAAGAGTGATGG+TGG - chr6_4:1466286-1466305 Msa0970030:intron 40.0%
ATTAGAATAGGGACCAAAGG+AGG + chr6_4:1466343-1466362 None:intergenic 40.0%
TGTTACAGAGGGTAATTGAG+GGG + chr6_4:1466547-1466566 None:intergenic 40.0%
CTGTTACAGAGGGTAATTGA+GGG + chr6_4:1466548-1466567 None:intergenic 40.0%
TCTGTTACAGAGGGTAATTG+AGG + chr6_4:1466549-1466568 None:intergenic 40.0%
GATTTCAGCTTCTCATTGGA+TGG - chr6_4:1466690-1466709 Msa0970030:intron 40.0%
! TGGTTCTACATGTTATGGTG+CGG + chr6_4:1466803-1466822 None:intergenic 40.0%
!! TGGTGTTTGTTGTGGCATAT+AGG - chr6_4:1467071-1467090 Msa0970030:intron 40.0%
!! GGTGTTTGTTGTGGCATATA+GGG - chr6_4:1467072-1467091 Msa0970030:intron 40.0%
AGTTTCAACTGATGCAATGG+TGG - chr6_4:1467130-1467149 Msa0970030:intron 40.0%
ACCCCAAAACACTCAATTCA+AGG + chr6_4:1467226-1467245 None:intergenic 40.0%
!!! TGAATTGAGTGTTTTGGGGT+AGG - chr6_4:1467226-1467245 Msa0970030:intron 40.0%
AAATCAGTGAGCTTCCTTCT+AGG + chr6_4:1467347-1467366 None:intergenic 40.0%
!!! GTGAATTAGGGTTTTGAGGG+AGG - chr6_4:1464989-1465008 Msa0970030:three_prime_UTR 45.0%
!!! AATTAGGGTTTTGAGGGAGG+AGG - chr6_4:1464992-1465011 Msa0970030:three_prime_UTR 45.0%
CGTTTGCCGGATAGATTAAC+AGG + chr6_4:1465131-1465150 None:intergenic 45.0%
AGCGCAAGCTCTTCAAACAA+TGG - chr6_4:1465153-1465172 Msa0970030:three_prime_UTR 45.0%
CAAAAAGAGGCTGTAGAGAG+TGG - chr6_4:1465283-1465302 Msa0970030:three_prime_UTR 45.0%
AGAGAGTGGCTTGATTAGCA+TGG - chr6_4:1465297-1465316 Msa0970030:three_prime_UTR 45.0%
GTTCAAATGGCTGTTGCTGA+AGG - chr6_4:1465325-1465344 Msa0970030:exon 45.0%
AGGAATCAGCTAATCACTCG+AGG + chr6_4:1465390-1465409 None:intergenic 45.0%
CTTAAACAGCTCAAGGGCAA+AGG - chr6_4:1465520-1465539 Msa0970030:intron 45.0%
!! TTGGTGTCAAGCGTCCATAT+CGG + chr6_4:1465594-1465613 None:intergenic 45.0%
CATGTGTACACTGACATGTG+TGG + chr6_4:1465653-1465672 None:intergenic 45.0%
CACACATGTCAGTGTACACA+TGG - chr6_4:1465651-1465670 Msa0970030:intron 45.0%
AGTGTACACATGGCTGACAT+TGG - chr6_4:1465661-1465680 Msa0970030:intron 45.0%
GTGTACACATGGCTGACATT+GGG - chr6_4:1465662-1465681 Msa0970030:intron 45.0%
! TCTAGGATTCTTGGATCGAG+GGG - chr6_4:1466167-1466186 Msa0970030:intron 45.0%
!! TCTTCAAGAGTGATGGTGGT+TGG - chr6_4:1466290-1466309 Msa0970030:intron 45.0%
CAACTATTAGCGACCTCCTT+TGG - chr6_4:1466327-1466346 Msa0970030:intron 45.0%
CAGTTTCAGCGTATAGCTTG+TGG + chr6_4:1466492-1466511 None:intergenic 45.0%
ACAAAGCAGCAAGAATGCTC+TGG + chr6_4:1466632-1466651 None:intergenic 45.0%
GTTCACAACAACGCAGTGTA+GGG + chr6_4:1466658-1466677 None:intergenic 45.0%
AGTTCACAACAACGCAGTGT+AGG + chr6_4:1466659-1466678 None:intergenic 45.0%
ACTGCGTTGTTGTGAACTAG+CGG - chr6_4:1466661-1466680 Msa0970030:intron 45.0%
TCTACATGTTATGGTGCGGT+AGG + chr6_4:1466799-1466818 None:intergenic 45.0%
TCAGTTGAAACTTCAGCAGC+AGG + chr6_4:1467122-1467141 None:intergenic 45.0%
!!! ATTTTTTTTCAAATAATTAT+TGG + chr6_4:1465613-1465632 None:intergenic 5.0%
! GAAGAGCTCTAGTTGCTGAG+AGG - chr6_4:1465051-1465070 Msa0970030:three_prime_UTR 50.0%
TCTTAAGCTTGCCGGTGGTA+GGG + chr6_4:1465097-1465116 None:intergenic 50.0%
ATCTTAAGCTTGCCGGTGGT+AGG + chr6_4:1465098-1465117 None:intergenic 50.0%
TCTGATCTTAAGCTTGCCGG+TGG + chr6_4:1465102-1465121 None:intergenic 50.0%
ACAGAGGGTAATTGAGGGGA+GGG + chr6_4:1466543-1466562 None:intergenic 50.0%
TACAGAGGGTAATTGAGGGG+AGG + chr6_4:1466544-1466563 None:intergenic 50.0%
ATGCAGTGCTACCAACTGAG+AGG - chr6_4:1466602-1466621 Msa0970030:intron 50.0%
! GCTCTGGTTTACCTCTCAGT+TGG + chr6_4:1466616-1466635 None:intergenic 50.0%
ATTGGGCACACGCCATCGAT+CGG - chr6_4:1465679-1465698 Msa0970030:intron 55.0%
! ACGCCATCGATCGGAAGTGT+TGG - chr6_4:1465688-1465707 Msa0970030:intron 55.0%
GCACCAACACTTCCGATCGA+TGG + chr6_4:1465694-1465713 None:intergenic 55.0%
TGATATAGCCAAGGGGCGAG+TGG - chr6_4:1466052-1466071 Msa0970030:intron 55.0%
GATATAGCCAAGGGGCGAGT+GGG - chr6_4:1466053-1466072 Msa0970030:intron 55.0%
GGCGAGTGGGTCTCTACATA+GGG - chr6_4:1466066-1466085 Msa0970030:intron 55.0%
AGAGGGTAATTGAGGGGAGG+GGG + chr6_4:1466541-1466560 None:intergenic 55.0%
CAGAGGGTAATTGAGGGGAG+GGG + chr6_4:1466542-1466561 None:intergenic 55.0%
!!! AGGGTTTTGAGGGAGGAGGC+AGG - chr6_4:1464996-1465015 Msa0970030:three_prime_UTR 60.0%
!!! GGGTTTTGAGGGAGGAGGCA+GGG - chr6_4:1464997-1465016 Msa0970030:three_prime_UTR 60.0%
TTTGAGGGAGGAGGCAGGGA+TGG - chr6_4:1465001-1465020 Msa0970030:three_prime_UTR 60.0%
ATTCACGGCGACCCTACCAC+CGG - chr6_4:1465083-1465102 Msa0970030:three_prime_UTR 60.0%
GAGCTTGCGCTTGCGTTTGC+CGG + chr6_4:1465144-1465163 None:intergenic 60.0%
GGGCGAGTGGGTCTCTACAT+AGG - chr6_4:1466065-1466084 Msa0970030:intron 60.0%
TAATTGAGGGGAGGGGGCTG+GGG + chr6_4:1466535-1466554 None:intergenic 60.0%
GTAATTGAGGGGAGGGGGCT+GGG + chr6_4:1466536-1466555 None:intergenic 60.0%
GTAGAGACCCACTCGCCCCT+TGG + chr6_4:1466063-1466082 None:intergenic 65.0%
GGTAATTGAGGGGAGGGGGC+TGG + chr6_4:1466537-1466556 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1464975 1467509 1464975 ID=Msa0970030;Name=Msa0970030
chr6_4 mRNA 1464975 1467509 1464975 ID=Msa0970030-mRNA-1;Parent=Msa0970030;Name=Msa0970030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|4|352|126
chr6_4 exon 1464975 1465391 1464975 ID=Msa0970030-mRNA-1:exon:751;Parent=Msa0970030-mRNA-1
chr6_4 exon 1466943 1467029 1466943 ID=Msa0970030-mRNA-1:exon:750;Parent=Msa0970030-mRNA-1
chr6_4 exon 1467138 1467204 1467138 ID=Msa0970030-mRNA-1:exon:749;Parent=Msa0970030-mRNA-1
chr6_4 exon 1467303 1467509 1467303 ID=Msa0970030-mRNA-1:exon:748;Parent=Msa0970030-mRNA-1
chr6_4 five_prime_UTR 1467465 1467509 1467465 ID=Msa0970030-mRNA-1:five_prime_utr;Parent=Msa0970030-mRNA-1
chr6_4 CDS 1467303 1467464 1467303 ID=Msa0970030-mRNA-1:cds;Parent=Msa0970030-mRNA-1
chr6_4 CDS 1467138 1467204 1467138 ID=Msa0970030-mRNA-1:cds;Parent=Msa0970030-mRNA-1
chr6_4 CDS 1466943 1467029 1466943 ID=Msa0970030-mRNA-1:cds;Parent=Msa0970030-mRNA-1
chr6_4 CDS 1465327 1465391 1465327 ID=Msa0970030-mRNA-1:cds;Parent=Msa0970030-mRNA-1
chr6_4 three_prime_UTR 1464975 1465326 1464975 ID=Msa0970030-mRNA-1:three_prime_utr;Parent=Msa0970030-mRNA-1
Gene Sequence

>Msa0970030

ATGGCGAAGTTCAACGTTGTTCAGAAAAGAAGAAGAGCTCTAGTTGCTGAGAGGAAGAGATTGATTCACGGCGACCCTACCACCGGCAAGCTTAAGATCAGAAAGCAGCCTGTTAATCTATCCGGCAAACGCAAGCGCAAGCTCTTCAAACAATGGCGTCGTGAACAAAAAGAGGCTGTAGAGAGTGGCTTGATTAGCATGGAAGATGTTCAAATGGCTGTTGCTGAAGGGGAAACCAAAGATAAGAGTGCTGCATCTTCAGCTAAATTTCACTTGAAAAAAAAGGGCTTGAAACTTAAACAGCTCAAGGGCAAAGGGAAGACCAAAAGAAAATCTGATGTTCCTGCTGCTGAAGTTTCAACTGATGCAATGGTGGAGTAA

Protein sequence

>Msa0970030

MAKFNVVQKRRRALVAERKRLIHGDPTTGKLKIRKQPVNLSGKRKRKLFKQWRREQKEAVESGLISMEDVQMAVAEGETKDKSAASSAKFHLKKKGLKLKQLKGKGKTKRKSDVPAAEVSTDAMVE*