AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356440 MtrunA17_Chr6g0448891 96.032 126 5 0 1 126 1 126 5.72e-71 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356440 AT1G08580.1 53.261 92 42 1 1 92 1 91 2.94e-27 97.8

Find 38 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCATAAAATATTATTTC+TGG 0.157938 tig0015628:-51902 None:intergenic
TAAGGTTCAGAGAGTGAATT+AGG 0.175801 tig0015628:-54414 Msa1356440:five_prime_UTR
CTTTGTCCTTTACTTTATAT+TGG 0.277243 tig0015628:-51969 Msa1356440:three_prime_UTR
CTTTCTGATCTTAAGCTTGC+CGG 0.286439 tig0015628:+54288 None:intergenic
TAACCTTGAATTGAGTGTTT+TGG 0.289455 tig0015628:-52170 Msa1356440:three_prime_UTR
AGATGCAGCACTCTTATCTT+TGG 0.304089 tig0015628:+53929 None:intergenic
AAATCAGTGAGCTTCCTTCT+AGG 0.306730 tig0015628:+52046 None:intergenic
GAGCTTGCGCTTGCGTTTGC+CGG 0.309830 tig0015628:+54249 None:intergenic
CGTTTGCCGGATAGATTAAC+AGG 0.331339 tig0015628:+54262 None:intergenic
CTTCATCTAACATTTGATAA+AGG 0.333342 tig0015628:+52013 None:intergenic
CTTCTATCCTCATACTATAA+AGG 0.366513 tig0015628:+52220 None:intergenic
GAGCATAAAATATTATTTCT+GGG 0.417415 tig0015628:-51901 None:intergenic
ACCCCAAAACACTCAATTCA+AGG 0.443624 tig0015628:+52167 None:intergenic
AAGGTTCAGAGAGTGAATTA+GGG 0.459949 tig0015628:-54413 Msa1356440:five_prime_UTR
AAGGAAATCAAATTAGCATA+TGG 0.462611 tig0015628:-51943 Msa1356440:three_prime_UTR
AGTAAAGGACAAAGATAAAC+CGG 0.475592 tig0015628:+51978 None:intergenic
ATCTTAAGCTTGCCGGTGGT+AGG 0.480726 tig0015628:+54295 None:intergenic
ATTGTTGTCATATTCCTAGA+AGG 0.483581 tig0015628:-52060 Msa1356440:three_prime_UTR
AAGCAGCCTGTTAATCTATC+CGG 0.484871 tig0015628:-54268 Msa1356440:CDS
TTTGAGGGAGGAGGCAGGGA+TGG 0.490322 tig0015628:-54389 Msa1356440:exon
CTTTACTTTATATTGGTGAA+AGG 0.493663 tig0015628:-51962 Msa1356440:three_prime_UTR
CTTTCACCAATATAAAGTAA+AGG 0.505194 tig0015628:+51963 None:intergenic
CTTGAAACTTAAACAGCTCA+AGG 0.522552 tig0015628:-53877 Msa1356440:CDS
TCAGTTGAAACTTCAGCAGC+AGG 0.532061 tig0015628:+52271 None:intergenic
TCTTAAGCTTGCCGGTGGTA+GGG 0.536083 tig0015628:+54296 None:intergenic
TAGCATGGAAGATGTTCAAA+TGG 0.542838 tig0015628:-54078 Msa1356440:CDS
CTTAAACAGCTCAAGGGCAA+AGG 0.565635 tig0015628:-53870 Msa1356440:intron
GAGAGGAAGAGATTGATTCA+CGG 0.579715 tig0015628:-54322 Msa1356440:CDS
AGAGAGTGGCTTGATTAGCA+TGG 0.596496 tig0015628:-54093 Msa1356440:CDS
GATGAAGTAGTATATTGCAC+CGG 0.608910 tig0015628:-51997 Msa1356440:three_prime_UTR
AGCGCAAGCTCTTCAAACAA+TGG 0.614028 tig0015628:-54237 Msa1356440:CDS
TGAAGTTTCAACTGATGCAA+TGG 0.630524 tig0015628:-52263 Msa1356440:CDS
GTTCAAATGGCTGTTGCTGA+AGG 0.631234 tig0015628:-54065 Msa1356440:intron
TTATAGTATGAGGATAGAAG+AGG 0.639645 tig0015628:-52217 Msa1356440:three_prime_UTR
AGTTTCAACTGATGCAATGG+TGG 0.646685 tig0015628:-52260 Msa1356440:CDS
GAAGAGCTCTAGTTGCTGAG+AGG 0.671480 tig0015628:-54339 Msa1356440:CDS
TTGAAACTTAAACAGCTCAA+GGG 0.676667 tig0015628:-53876 Msa1356440:CDS
TCTGATCTTAAGCTTGCCGG+TGG 0.687271 tig0015628:+54291 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATATAAATAAAA+AGG + tig0015628:54195-54214 None:intergenic 0.0%
!!! TTTTTATTTATATTTTTTTA+TGG - tig0015628:54194-54213 Msa1356440:intron 0.0%
!! TAAATTTCACTTGAAAAAAA+AGG - tig0015628:52417-52436 Msa1356440:intron 15.0%
!! AAATTTCACTTGAAAAAAAA+GGG - tig0015628:52418-52437 Msa1356440:intron 15.0%
!!! AAAACTAATTTCTAGTTATA+AGG + tig0015628:52681-52700 None:intergenic 15.0%
!!! ATCTGCTTTTAAATATATTT+TGG - tig0015628:52904-52923 Msa1356440:intron 15.0%
!!! TTTTAAATATATTTTGGAGT+TGG - tig0015628:52910-52929 Msa1356440:intron 15.0%
!!! AGTTGATTTATTTTTTTAAG+TGG - tig0015628:53011-53030 Msa1356440:intron 15.0%
!! ACATATAATTCAAAAAGAAA+GGG + tig0015628:53493-53512 None:intergenic 15.0%
!! AACATATAATTCAAAAAGAA+AGG + tig0015628:53494-53513 None:intergenic 15.0%
!!! ATATTTTGTAAACAATTTGA+TGG + tig0015628:53958-53977 None:intergenic 15.0%
!!! ATTTTTTTATGGTAAAAGAA+TGG - tig0015628:54205-54224 Msa1356440:intron 15.0%
!! CAACAATAATATAATGTTTG+TGG - tig0015628:52816-52835 Msa1356440:intron 20.0%
!!! ATTTTTTTAAGTGGTATCTT+TGG - tig0015628:53020-53039 Msa1356440:intron 20.0%
!! TTAAAATGATTGAAAGATCT+AGG + tig0015628:53650-53669 None:intergenic 20.0%
!!! TTTTGTATAAATATGTCTAC+TGG + tig0015628:53751-53770 None:intergenic 20.0%
!!! TTTCACTTTCAATTTGATTT+TGG + tig0015628:53779-53798 None:intergenic 20.0%
!! AAATAAAACCTGTTACTATT+TGG + tig0015628:53811-53830 None:intergenic 20.0%
!!! ATGTTTTGAATATAGACATA+TGG - tig0015628:53855-53874 Msa1356440:intron 20.0%
!!! TGTTTTGAATATAGACATAT+GGG - tig0015628:53856-53875 Msa1356440:intron 20.0%
!!! ATTTTTTGAATTTCTTGTTG+TGG - tig0015628:53913-53932 Msa1356440:CDS 20.0%
!!! TTCACTTTTTGATTAACTGA+AGG - tig0015628:52186-52205 Msa1356440:three_prime_UTR 25.0%
! GGAAACTGAAATTCATTTAA+GGG + tig0015628:52297-52316 None:intergenic 25.0%
! AGGAAACTGAAATTCATTTA+AGG + tig0015628:52298-52317 None:intergenic 25.0%
! AAAAGAGCTCATTTATTGTT+TGG - tig0015628:52348-52367 Msa1356440:intron 25.0%
!!! ATTTTGACTACCTTGATTAT+TGG + tig0015628:52721-52740 None:intergenic 25.0%
! TCAAAATTGAGATTCTATCT+AGG - tig0015628:52734-52753 Msa1356440:intron 25.0%
! CAAAATTGAGATTCTATCTA+GGG - tig0015628:52735-52754 Msa1356440:intron 25.0%
! CAATAATATAATGTTTGTGG+TGG - tig0015628:52819-52838 Msa1356440:intron 25.0%
!! CTTATCAATTGTTGTTGATA+AGG - tig0015628:52845-52864 Msa1356440:intron 25.0%
! TTCAAAACAACGATTAATCT+AGG - tig0015628:53063-53082 Msa1356440:intron 25.0%
!!! GATTTTTGACTATCAAAACA+AGG + tig0015628:53170-53189 None:intergenic 25.0%
! AAAAAGAAAATGCAGAAACT+AGG - tig0015628:53344-53363 Msa1356440:intron 25.0%
!!! ATTCACTTTTAAGATTGTAG+TGG - tig0015628:53695-53714 Msa1356440:intron 25.0%
! CTTCATCTAACATTTGATAA+AGG + tig0015628:54308-54327 None:intergenic 25.0%
! CTTTGTCCTTTACTTTATAT+TGG - tig0015628:54349-54368 Msa1356440:CDS 25.0%
! CTTTCACCAATATAAAGTAA+AGG + tig0015628:54358-54377 None:intergenic 25.0%
! CTTTACTTTATATTGGTGAA+AGG - tig0015628:54356-54375 Msa1356440:CDS 25.0%
! AAGGAAATCAAATTAGCATA+TGG - tig0015628:54375-54394 Msa1356440:exon 25.0%
TTAACTGAAGGAACAAAAAG+AGG - tig0015628:52198-52217 Msa1356440:three_prime_UTR 30.0%
! GAGCTCTTTTGTTAAACTAA+AGG + tig0015628:52338-52357 None:intergenic 30.0%
TTGAAACTTAAACAGCTCAA+GGG - tig0015628:52442-52461 Msa1356440:intron 30.0%
!!! GGGCAAAGGTAATTTTTTTT+TGG - tig0015628:52462-52481 Msa1356440:intron 30.0%
!!! TTTTGGTTCTGTTTTGCATT+TGG - tig0015628:52479-52498 Msa1356440:intron 30.0%
AGGACTCAATTGTAAATCAT+GGG - tig0015628:52765-52784 Msa1356440:intron 30.0%
TAATATAATGTTTGTGGTGG+AGG - tig0015628:52822-52841 Msa1356440:intron 30.0%
TGTGATATCTAAATGAACGA+GGG + tig0015628:52945-52964 None:intergenic 30.0%
ATGTGATATCTAAATGAACG+AGG + tig0015628:52946-52965 None:intergenic 30.0%
ATATCACATGATATAGCCAA+GGG - tig0015628:52957-52976 Msa1356440:intron 30.0%
! AACGATTAATCTAGGATTCT+TGG - tig0015628:53071-53090 Msa1356440:intron 30.0%
TAGCCACAAACATTAGAATA+GGG + tig0015628:53267-53286 None:intergenic 30.0%
TTAGCCACAAACATTAGAAT+AGG + tig0015628:53268-53287 None:intergenic 30.0%
TATTCTAATGTTTGTGGCTA+AGG - tig0015628:53267-53286 Msa1356440:intron 30.0%
GAGAATAAATCTGTTACAGA+GGG + tig0015628:53471-53490 None:intergenic 30.0%
! CTGTTACTATTTGGTTGATA+AGG + tig0015628:53802-53821 None:intergenic 30.0%
CTTATCAACCAAATAGTAAC+AGG - tig0015628:53800-53819 Msa1356440:intron 30.0%
CTGCGTAGTTAACTTATAAT+TGG - tig0015628:53979-53998 Msa1356440:intron 30.0%
! CTTATAATTGGTGTTTGTTG+TGG - tig0015628:53991-54010 Msa1356440:intron 30.0%
! AGGAACATCAGATTTTCTTT+TGG + tig0015628:54030-54049 None:intergenic 30.0%
! GTTTTCTCCTTTATAGTATG+AGG - tig0015628:54091-54110 Msa1356440:CDS 30.0%
CTTCTATCCTCATACTATAA+AGG + tig0015628:54101-54120 None:intergenic 30.0%
TTATAGTATGAGGATAGAAG+AGG - tig0015628:54101-54120 Msa1356440:CDS 30.0%
! TAACCTTGAATTGAGTGTTT+TGG - tig0015628:54148-54167 Msa1356440:intron 30.0%
! AACCTTGAATTGAGTGTTTT+GGG - tig0015628:54149-54168 Msa1356440:intron 30.0%
ATTGTTGTCATATTCCTAGA+AGG - tig0015628:54258-54277 Msa1356440:CDS 30.0%
AGTAAAGGACAAAGATAAAC+CGG + tig0015628:54343-54362 None:intergenic 30.0%
TAAGGTTCAGAGAGTGAATT+AGG - tig0015628:51904-51923 Msa1356440:three_prime_UTR 35.0%
AAGGTTCAGAGAGTGAATTA+GGG - tig0015628:51905-51924 Msa1356440:three_prime_UTR 35.0%
!! AGAGTGAATTAGGGTTTTGA+GGG - tig0015628:51914-51933 Msa1356440:three_prime_UTR 35.0%
TAGCATGGAAGATGTTCAAA+TGG - tig0015628:52240-52259 Msa1356440:exon 35.0%
!!! TATTGTTTGGTTTTGTGAGC+AGG - tig0015628:52361-52380 Msa1356440:intron 35.0%
!!! ATTGTTTGGTTTTGTGAGCA+GGG - tig0015628:52362-52381 Msa1356440:intron 35.0%
CTTGAAACTTAAACAGCTCA+AGG - tig0015628:52441-52460 Msa1356440:intron 35.0%
AAGGAAATTTGAATCAAGCC+AGG + tig0015628:52662-52681 None:intergenic 35.0%
! TGTTTGCTGACCAATAATCA+AGG - tig0015628:52708-52727 Msa1356440:intron 35.0%
GAGGACTCAATTGTAAATCA+TGG - tig0015628:52764-52783 Msa1356440:intron 35.0%
GATATCACATGATATAGCCA+AGG - tig0015628:52956-52975 Msa1356440:intron 35.0%
TATCACATGATATAGCCAAG+GGG - tig0015628:52958-52977 Msa1356440:intron 35.0%
!! GGGAAGTGTCAATGTTAATT+TGG - tig0015628:53100-53119 Msa1356440:intron 35.0%
AACATTAGAATAGGGACCAA+AGG + tig0015628:53259-53278 None:intergenic 35.0%
CTATACGCTGAAACTGAAAA+TGG - tig0015628:53409-53428 Msa1356440:intron 35.0%
GGAGAATAAATCTGTTACAG+AGG + tig0015628:53472-53491 None:intergenic 35.0%
AGTAGATTTCAGCTTCTCAT+TGG - tig0015628:53614-53633 Msa1356440:intron 35.0%
!! TCTACTGGTTCTACATGTTA+TGG + tig0015628:53736-53755 None:intergenic 35.0%
TGAAGTTTCAACTGATGCAA+TGG - tig0015628:54055-54074 Msa1356440:intron 35.0%
TAGAAGAGGCAAAAATGAGA+TGG - tig0015628:54115-54134 Msa1356440:intron 35.0%
! ACCTTGAATTGAGTGTTTTG+GGG - tig0015628:54150-54169 Msa1356440:intron 35.0%
GATGAAGTAGTATATTGCAC+CGG - tig0015628:54321-54340 Msa1356440:CDS 35.0%
! GAGAGTGAATTAGGGTTTTG+AGG - tig0015628:51913-51932 Msa1356440:three_prime_UTR 40.0%
! GAGAGGAAGAGATTGATTCA+CGG - tig0015628:51996-52015 Msa1356440:three_prime_UTR 40.0%
CTTTCTGATCTTAAGCTTGC+CGG + tig0015628:52033-52052 None:intergenic 40.0%
AAGCAGCCTGTTAATCTATC+CGG - tig0015628:52050-52069 Msa1356440:three_prime_UTR 40.0%
!! TTTAAGGGATTGATAGCGCA+CGG + tig0015628:52282-52301 None:intergenic 40.0%
!!! TTGTTTGGTTTTGTGAGCAG+GGG - tig0015628:52363-52382 Msa1356440:intron 40.0%
AGATGCAGCACTCTTATCTT+TGG + tig0015628:52392-52411 None:intergenic 40.0%
!! GAGTTATGAAAGCACCGATA+TGG - tig0015628:52505-52524 Msa1356440:intron 40.0%
CTACATAGATTGAGTCTACC+TGG - tig0015628:52641-52660 Msa1356440:intron 40.0%
! ATTCTATCTAGGGTCAAGAG+AGG - tig0015628:52745-52764 Msa1356440:intron 40.0%
CATGGGATTGTAACATAGCA+TGG - tig0015628:52782-52801 Msa1356440:intron 40.0%
! AATCTAGGATTCTTGGATCG+AGG - tig0015628:53078-53097 Msa1356440:intron 40.0%
! ATCTAGGATTCTTGGATCGA+GGG - tig0015628:53079-53098 Msa1356440:intron 40.0%
CCATCACTCTTGAAGACTAA+TGG + tig0015628:53199-53218 None:intergenic 40.0%
!! CCATTAGTCTTCAAGAGTGA+TGG - tig0015628:53196-53215 Msa1356440:intron 40.0%
! TTAGTCTTCAAGAGTGATGG+TGG - tig0015628:53199-53218 Msa1356440:intron 40.0%
ATTAGAATAGGGACCAAAGG+AGG + tig0015628:53256-53275 None:intergenic 40.0%
GGTCCCTATTCTAATGTTTG+TGG - tig0015628:53261-53280 Msa1356440:intron 40.0%
TGTTACAGAGGGTAATTGAG+GGG + tig0015628:53460-53479 None:intergenic 40.0%
CTGTTACAGAGGGTAATTGA+GGG + tig0015628:53461-53480 None:intergenic 40.0%
TCTGTTACAGAGGGTAATTG+AGG + tig0015628:53462-53481 None:intergenic 40.0%
GTTGATGCAGTGATTACACA+TGG - tig0015628:53511-53530 Msa1356440:intron 40.0%
GATTTCAGCTTCTCATTGGA+TGG - tig0015628:53618-53637 Msa1356440:intron 40.0%
! TGGTTCTACATGTTATGGTG+CGG + tig0015628:53731-53750 None:intergenic 40.0%
!! TGGTGTTTGTTGTGGCATAT+AGG - tig0015628:53999-54018 Msa1356440:intron 40.0%
!! GGTGTTTGTTGTGGCATATA+GGG - tig0015628:54000-54019 Msa1356440:intron 40.0%
AGTTTCAACTGATGCAATGG+TGG - tig0015628:54058-54077 Msa1356440:intron 40.0%
ACCCCAAAACACTCAATTCA+AGG + tig0015628:54154-54173 None:intergenic 40.0%
!!! TGAATTGAGTGTTTTGGGGT+AGG - tig0015628:54154-54173 Msa1356440:intron 40.0%
AAATCAGTGAGCTTCCTTCT+AGG + tig0015628:54275-54294 None:intergenic 40.0%
!!! GTGAATTAGGGTTTTGAGGG+AGG - tig0015628:51917-51936 Msa1356440:three_prime_UTR 45.0%
!!! AATTAGGGTTTTGAGGGAGG+AGG - tig0015628:51920-51939 Msa1356440:three_prime_UTR 45.0%
CGTTTGCCGGATAGATTAAC+AGG + tig0015628:52059-52078 None:intergenic 45.0%
AGCGCAAGCTCTTCAAACAA+TGG - tig0015628:52081-52100 Msa1356440:three_prime_UTR 45.0%
CAAAAAGAGGCTGTAGAGAG+TGG - tig0015628:52211-52230 Msa1356440:three_prime_UTR 45.0%
AGAGAGTGGCTTGATTAGCA+TGG - tig0015628:52225-52244 Msa1356440:three_prime_UTR 45.0%
GTTCAAATGGCTGTTGCTGA+AGG - tig0015628:52253-52272 Msa1356440:exon 45.0%
AGGAATCAGCTAATCACTCG+AGG + tig0015628:52318-52337 None:intergenic 45.0%
CTTAAACAGCTCAAGGGCAA+AGG - tig0015628:52448-52467 Msa1356440:intron 45.0%
!! TTGGTGTCAAGCGTCCATAT+CGG + tig0015628:52522-52541 None:intergenic 45.0%
CATGTGTACACTGACATGTG+TGG + tig0015628:52581-52600 None:intergenic 45.0%
CACACATGTCAGTGTACACA+TGG - tig0015628:52579-52598 Msa1356440:intron 45.0%
AGTGTACACATGGCTGACAT+TGG - tig0015628:52589-52608 Msa1356440:intron 45.0%
GTGTACACATGGCTGACATT+GGG - tig0015628:52590-52609 Msa1356440:intron 45.0%
! TCTAGGATTCTTGGATCGAG+GGG - tig0015628:53080-53099 Msa1356440:intron 45.0%
!! TCTTCAAGAGTGATGGTGGT+TGG - tig0015628:53203-53222 Msa1356440:intron 45.0%
CAACTATTAGCGACCTCCTT+TGG - tig0015628:53240-53259 Msa1356440:intron 45.0%
CAGTTTCAGCGTATAGCTTG+TGG + tig0015628:53405-53424 None:intergenic 45.0%
ACAAAGCAGCAAGAATGCTC+TGG + tig0015628:53560-53579 None:intergenic 45.0%
GTTCACAACAACGCAGTGTA+GGG + tig0015628:53586-53605 None:intergenic 45.0%
AGTTCACAACAACGCAGTGT+AGG + tig0015628:53587-53606 None:intergenic 45.0%
ACTGCGTTGTTGTGAACTAG+CGG - tig0015628:53589-53608 Msa1356440:intron 45.0%
TCTACATGTTATGGTGCGGT+AGG + tig0015628:53727-53746 None:intergenic 45.0%
TCAGTTGAAACTTCAGCAGC+AGG + tig0015628:54050-54069 None:intergenic 45.0%
!!! ATTTTTTTTCAAATAATTAT+TGG + tig0015628:52541-52560 None:intergenic 5.0%
! GAAGAGCTCTAGTTGCTGAG+AGG - tig0015628:51979-51998 Msa1356440:three_prime_UTR 50.0%
TCTTAAGCTTGCCGGTGGTA+GGG + tig0015628:52025-52044 None:intergenic 50.0%
ATCTTAAGCTTGCCGGTGGT+AGG + tig0015628:52026-52045 None:intergenic 50.0%
TCTGATCTTAAGCTTGCCGG+TGG + tig0015628:52030-52049 None:intergenic 50.0%
TGTGGCTAAGGCTGCACATT+TGG - tig0015628:53279-53298 Msa1356440:intron 50.0%
ACAGAGGGTAATTGAGGGGA+GGG + tig0015628:53456-53475 None:intergenic 50.0%
TACAGAGGGTAATTGAGGGG+AGG + tig0015628:53457-53476 None:intergenic 50.0%
ATGGCATGCTACCAACTGAG+AGG - tig0015628:53530-53549 Msa1356440:intron 50.0%
! GCTCTGGTTTACCTCTCAGT+TGG + tig0015628:53544-53563 None:intergenic 50.0%
ATTGGGCACACGCCATCGAT+CGG - tig0015628:52607-52626 Msa1356440:intron 55.0%
! ACGCCATCGATCGGAAGTGT+TGG - tig0015628:52616-52635 Msa1356440:intron 55.0%
GCACCAACACTTCCGATCGA+TGG + tig0015628:52622-52641 None:intergenic 55.0%
TGATATAGCCAAGGGGCGAG+TGG - tig0015628:52965-52984 Msa1356440:intron 55.0%
GATATAGCCAAGGGGCGAGT+GGG - tig0015628:52966-52985 Msa1356440:intron 55.0%
GGCGAGTGGGTCTCTACATA+GGG - tig0015628:52979-52998 Msa1356440:intron 55.0%
AGAGGGTAATTGAGGGGAGG+GGG + tig0015628:53454-53473 None:intergenic 55.0%
CAGAGGGTAATTGAGGGGAG+GGG + tig0015628:53455-53474 None:intergenic 55.0%
!!! AGGGTTTTGAGGGAGGAGGC+AGG - tig0015628:51924-51943 Msa1356440:three_prime_UTR 60.0%
!!! GGGTTTTGAGGGAGGAGGCA+GGG - tig0015628:51925-51944 Msa1356440:three_prime_UTR 60.0%
TTTGAGGGAGGAGGCAGGGA+TGG - tig0015628:51929-51948 Msa1356440:three_prime_UTR 60.0%
ATTCACGGCGACCCTACCAC+CGG - tig0015628:52011-52030 Msa1356440:three_prime_UTR 60.0%
GAGCTTGCGCTTGCGTTTGC+CGG + tig0015628:52072-52091 None:intergenic 60.0%
GGGCGAGTGGGTCTCTACAT+AGG - tig0015628:52978-52997 Msa1356440:intron 60.0%
TAATTGAGGGGAGGGGGCTG+GGG + tig0015628:53448-53467 None:intergenic 60.0%
GTAATTGAGGGGAGGGGGCT+GGG + tig0015628:53449-53468 None:intergenic 60.0%
GTAGAGACCCACTCGCCCCT+TGG + tig0015628:52976-52995 None:intergenic 65.0%
GGTAATTGAGGGGAGGGGGC+TGG + tig0015628:53450-53469 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0015628 gene 51903 54437 51903 ID=Msa1356440;Name=Msa1356440
tig0015628 mRNA 51903 54437 51903 ID=Msa1356440-mRNA-1;Parent=Msa1356440;Name=Msa1356440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|4|352|126
tig0015628 exon 51903 52319 51903 ID=Msa1356440-mRNA-1:exon:9905;Parent=Msa1356440-mRNA-1
tig0015628 exon 53871 53957 53871 ID=Msa1356440-mRNA-1:exon:9904;Parent=Msa1356440-mRNA-1
tig0015628 exon 54066 54132 54066 ID=Msa1356440-mRNA-1:exon:9903;Parent=Msa1356440-mRNA-1
tig0015628 exon 54231 54437 54231 ID=Msa1356440-mRNA-1:exon:9902;Parent=Msa1356440-mRNA-1
tig0015628 five_prime_UTR 54393 54437 54393 ID=Msa1356440-mRNA-1:five_prime_utr;Parent=Msa1356440-mRNA-1
tig0015628 CDS 54231 54392 54231 ID=Msa1356440-mRNA-1:cds;Parent=Msa1356440-mRNA-1
tig0015628 CDS 54066 54132 54066 ID=Msa1356440-mRNA-1:cds;Parent=Msa1356440-mRNA-1
tig0015628 CDS 53871 53957 53871 ID=Msa1356440-mRNA-1:cds;Parent=Msa1356440-mRNA-1
tig0015628 CDS 52255 52319 52255 ID=Msa1356440-mRNA-1:cds;Parent=Msa1356440-mRNA-1
tig0015628 three_prime_UTR 51903 52254 51903 ID=Msa1356440-mRNA-1:three_prime_utr;Parent=Msa1356440-mRNA-1
Gene Sequence

>Msa1356440

ATGGCGAAGTTCAACGTTGTTCAGAAAAGAAGAAGAGCTCTAGTTGCTGAGAGGAAGAGATTGATTCACGGCGACCCTACCACCGGCAAGCTTAAGATCAGAAAGCAGCCTGTTAATCTATCCGGCAAACGCAAGCGCAAGCTCTTCAAACAATGGCGTCGTGAACAAAAAGAGGCTGTAGAGAGTGGCTTGATTAGCATGGAAGATGTTCAAATGGCTGTTGCTGAAGGGGAAACCAAAGATAAGAGTGCTGCATCTTCAGCTAAATTTCACTTGAAAAAAAAGGGCTTGAAACTTAAACAGCTCAAGGGCAAAGGGAAGACCAAAAGAAAATCTGATGTTCCTGCTGCTGAAGTTTCAACTGATGCAATGGTGGAGTAA

Protein sequence

>Msa1356440

MAKFNVVQKRRRALVAERKRLIHGDPTTGKLKIRKQPVNLSGKRKRKLFKQWRREQKEAVESGLISMEDVQMAVAEGETKDKSAASSAKFHLKKKGLKLKQLKGKGKTKRKSDVPAAEVSTDAMVE*