Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749890 | XP_003610975.2 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749890 | sp|Q9SGW8|P4KG2_ARATH | 57.119 | 590 | 205 | 6 | 1 | 582 | 1 | 550 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749890 | G7K9A8 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0749890 | 0.828707 | 7.738579e-55 | -8.615850e-47 |
| Msa0028420 | Msa0749890 | 0.807698 | 4.450453e-50 | -8.615850e-47 |
| Msa0030370 | Msa0749890 | 0.801673 | 8.059520e-49 | -8.615850e-47 |
| Msa0052480 | Msa0749890 | 0.822726 | 2.030783e-53 | -8.615850e-47 |
| Msa0054690 | Msa0749890 | 0.814580 | 1.432852e-51 | -8.615850e-47 |
| Msa0067330 | Msa0749890 | 0.815189 | 1.050187e-51 | -8.615850e-47 |
| Msa0090400 | Msa0749890 | 0.803393 | 3.561026e-49 | -8.615850e-47 |
| Msa0094780 | Msa0749890 | 0.810976 | 8.819035e-51 | -8.615850e-47 |
| Msa0658640 | Msa0749890 | 0.830491 | 2.850069e-55 | -8.615850e-47 |
| Msa0666700 | Msa0749890 | 0.804704 | 1.900654e-49 | -8.615850e-47 |
| Msa0683570 | Msa0749890 | 0.806486 | 8.035890e-50 | -8.615850e-47 |
| Msa0702810 | Msa0749890 | 0.802094 | 6.604357e-49 | -8.615850e-47 |
| Msa0703600 | Msa0749890 | 0.826311 | 2.909107e-54 | -8.615850e-47 |
| Msa0709200 | Msa0749890 | 0.828700 | 7.769811e-55 | -8.615850e-47 |
| Msa0712110 | Msa0749890 | 0.800117 | 1.675472e-48 | -8.615850e-47 |
| Msa0735780 | Msa0749890 | 0.807746 | 4.347471e-50 | -8.615850e-47 |
| Msa0749890 | Msa0756590 | 0.822360 | 2.469588e-53 | -8.615850e-47 |
| Msa0749890 | Msa0777750 | 0.802585 | 5.231257e-49 | -8.615850e-47 |
| Msa0749890 | Msa0795870 | 0.834643 | 2.662428e-56 | -8.615850e-47 |
| Msa0749890 | Msa0824450 | 0.806737 | 7.114139e-50 | -8.615850e-47 |
| Msa0749890 | Msa0828970 | 0.806912 | 6.531479e-50 | -8.615850e-47 |
| Msa0749890 | Msa0830130 | 0.957616 | 1.762205e-115 | -8.615850e-47 |
| Msa0749890 | Msa0830460 | 0.951701 | 1.171388e-109 | -8.615850e-47 |
| Msa0749890 | Msa0833650 | 0.843459 | 1.383028e-58 | -8.615850e-47 |
| Msa0749890 | Msa0835900 | 0.802230 | 6.191509e-49 | -8.615850e-47 |
| Msa0749890 | Msa0997920 | 0.836245 | 1.047958e-56 | -8.615850e-47 |
| Msa0749890 | Msa1042160 | 0.805641 | 1.210391e-49 | -8.615850e-47 |
| Msa0749890 | Msa1042190 | 0.806605 | 7.585272e-50 | -8.615850e-47 |
| Msa0749890 | Msa1132840 | 0.840067 | 1.086917e-57 | -8.615850e-47 |
| Msa0749890 | Msa1167470 | 0.806711 | 7.202654e-50 | -8.615850e-47 |
| Msa0749890 | Msa1192570 | 0.823534 | 1.315317e-53 | -8.615850e-47 |
| Msa0749890 | Msa1200890 | 0.800030 | 1.744918e-48 | -8.615850e-47 |
| Msa0749890 | Msa1208950 | 0.800461 | 1.425780e-48 | -8.615850e-47 |
| Msa0749890 | Msa1215870 | 0.809418 | 1.911402e-50 | -8.615850e-47 |
| Msa0749890 | Msa1224930 | 0.813628 | 2.324982e-51 | -8.615850e-47 |
| Msa0749890 | Msa1226520 | 0.827852 | 1.244368e-54 | -8.615850e-47 |
| Msa0749890 | Msa1307630 | 0.831630 | 1.497175e-55 | -8.615850e-47 |
| Msa0749890 | Msa1359690 | 0.813748 | 2.187405e-51 | -8.615850e-47 |
| Msa0749890 | Msa1397400 | 0.819801 | 9.597643e-53 | -8.615850e-47 |
| Msa0749890 | Msa1420950 | 0.818730 | 1.682890e-52 | -8.615850e-47 |
| Msa0749890 | Msa1437640 | 0.898345 | 5.812108e-77 | -8.615850e-47 |
| Msa0749890 | Msa1440880 | 0.817764 | 2.784845e-52 | -8.615850e-47 |
| Msa0749890 | Msa1446810 | 0.815349 | 9.674589e-52 | -8.615850e-47 |
| Msa0128460 | Msa0749890 | 0.801694 | 7.978012e-49 | -8.615850e-47 |
| Msa0136650 | Msa0749890 | 0.809018 | 2.327751e-50 | -8.615850e-47 |
| Msa0137880 | Msa0749890 | 0.808563 | 2.911889e-50 | -8.615850e-47 |
| Msa0140280 | Msa0749890 | 0.813665 | 2.281836e-51 | -8.615850e-47 |
| Msa0158860 | Msa0749890 | 0.811582 | 6.512718e-51 | -8.615850e-47 |
| Msa0173730 | Msa0749890 | 0.809903 | 1.503363e-50 | -8.615850e-47 |
| Msa0182190 | Msa0749890 | 0.817319 | 3.508064e-52 | -8.615850e-47 |
| Msa0182240 | Msa0749890 | 0.822857 | 1.892905e-53 | -8.615850e-47 |
| Msa0225860 | Msa0749890 | 0.828974 | 6.671051e-55 | -8.615850e-47 |
| Msa0369790 | Msa0749890 | 0.803297 | 3.727867e-49 | -8.615850e-47 |
| Msa0380620 | Msa0749890 | 0.802924 | 4.453999e-49 | -8.615850e-47 |
| Msa0430260 | Msa0749890 | 0.804097 | 2.544019e-49 | -8.615850e-47 |
| Msa0430300 | Msa0749890 | 0.809084 | 2.253493e-50 | -8.615850e-47 |
| Msa0464000 | Msa0749890 | 0.805290 | 1.433918e-49 | -8.615850e-47 |
| Msa0242590 | Msa0749890 | 0.803287 | 3.746028e-49 | -8.615850e-47 |
| Msa0260510 | Msa0749890 | 0.817993 | 2.471346e-52 | -8.615850e-47 |
| Msa0267110 | Msa0749890 | 0.812989 | 3.212163e-51 | -8.615850e-47 |
| Msa0298470 | Msa0749890 | 0.835723 | 1.421155e-56 | -8.615850e-47 |
| Msa0330380 | Msa0749890 | 0.813761 | 2.172937e-51 | -8.615850e-47 |
| Msa0340500 | Msa0749890 | 0.836314 | 1.006514e-56 | -8.615850e-47 |
| Msa0509550 | Msa0749890 | 0.800843 | 1.191423e-48 | -8.615850e-47 |
| Msa0567170 | Msa0749890 | 0.823925 | 1.065214e-53 | -8.615850e-47 |
| Msa0580370 | Msa0749890 | 0.838858 | 2.240635e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749890 | MtrunA17_Chr5g0396531 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Msa0749890 | MtrunA17_Chr8g0388301 | 67.454 | 593 | 160 | 6 | 18 | 582 | 6 | 593 | 0.0 | 814 |
| Msa0749890 | MtrunA17_Chr8g0346901 | 55.281 | 606 | 231 | 12 | 1 | 581 | 1 | 591 | 0.0 | 663 |
| Msa0749890 | MtrunA17_Chr3g0126781 | 56.261 | 583 | 238 | 9 | 3 | 577 | 1 | 574 | 0.0 | 641 |
| Msa0749890 | MtrunA17_Chr7g0275661 | 55.826 | 575 | 224 | 11 | 23 | 580 | 29 | 590 | 0.0 | 624 |
| Msa0749890 | MtrunA17_Chr8g0366091 | 32.237 | 456 | 250 | 11 | 109 | 556 | 43 | 447 | 1.06e-63 | 220 |
| Msa0749890 | MtrunA17_Chr5g0420771 | 40.317 | 315 | 163 | 7 | 254 | 556 | 152 | 453 | 2.41e-62 | 217 |
| Msa0749890 | MtrunA17_Chr7g0220391 | 38.110 | 328 | 175 | 7 | 261 | 577 | 155 | 465 | 1.90e-59 | 209 |
| Msa0749890 | MtrunA17_Chr7g0255481 | 38.542 | 288 | 145 | 7 | 261 | 537 | 99 | 365 | 3.04e-58 | 201 |
| Msa0749890 | MtrunA17_Chr7g0274921 | 25.325 | 154 | 109 | 3 | 30 | 182 | 2 | 150 | 3.01e-11 | 63.5 |
| Msa0749890 | MtrunA17_Chr7g0274921 | 24.405 | 168 | 121 | 3 | 16 | 182 | 64 | 226 | 4.95e-11 | 63.2 |
| Msa0749890 | MtrunA17_Chr4g0041751 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 3.73e-11 | 63.5 |
| Msa0749890 | MtrunA17_Chr1g0181441 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 4.03e-11 | 63.5 |
| Msa0749890 | MtrunA17_Chr1g0181441 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 6.43e-11 | 62.8 |
| Msa0749890 | MtrunA17_Chr6g0475961 | 25.166 | 151 | 107 | 3 | 33 | 182 | 6 | 151 | 4.36e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749890 | AT2G46500.1 | 55.422 | 581 | 234 | 6 | 1 | 577 | 1 | 560 | 0.0 | 652 |
| Msa0749890 | AT2G46500.2 | 55.422 | 581 | 234 | 6 | 1 | 577 | 1 | 560 | 0.0 | 652 |
| Msa0749890 | AT5G24240.1 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 612 |
| Msa0749890 | AT5G24240.2 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 612 |
| Msa0749890 | AT2G46500.3 | 50.000 | 418 | 184 | 6 | 1 | 414 | 1 | 397 | 4.81e-133 | 395 |
| Msa0749890 | AT2G03890.1 | 38.788 | 330 | 178 | 6 | 238 | 556 | 139 | 455 | 8.96e-64 | 221 |
| Msa0749890 | AT1G13640.1 | 41.522 | 289 | 144 | 5 | 261 | 537 | 154 | 429 | 7.18e-63 | 218 |
| Msa0749890 | AT1G13640.2 | 41.522 | 289 | 144 | 5 | 261 | 537 | 154 | 429 | 7.18e-63 | 218 |
| Msa0749890 | AT1G26270.1 | 40.604 | 298 | 156 | 5 | 248 | 537 | 145 | 429 | 9.90e-63 | 218 |
| Msa0749890 | AT2G40850.1 | 37.647 | 340 | 180 | 9 | 243 | 565 | 94 | 418 | 2.40e-62 | 215 |
| Msa0749890 | AT3G56600.2 | 38.125 | 320 | 167 | 6 | 249 | 555 | 85 | 386 | 2.10e-61 | 212 |
| Msa0749890 | AT3G56600.1 | 38.125 | 320 | 167 | 6 | 249 | 555 | 88 | 389 | 2.38e-61 | 212 |
| Msa0749890 | AT3G56600.3 | 38.125 | 320 | 167 | 6 | 249 | 555 | 88 | 389 | 2.38e-61 | 212 |
| Msa0749890 | AT2G03890.2 | 40.161 | 249 | 127 | 4 | 318 | 556 | 99 | 335 | 1.11e-48 | 177 |
| Msa0749890 | AT1G27570.1 | 30.224 | 268 | 150 | 9 | 328 | 580 | 396 | 641 | 6.65e-25 | 109 |
| Msa0749890 | AT1G27570.2 | 30.224 | 268 | 150 | 9 | 328 | 580 | 387 | 632 | 6.71e-25 | 109 |
| Msa0749890 | AT4G05320.7 | 24.490 | 147 | 106 | 2 | 36 | 182 | 7 | 148 | 1.32e-11 | 63.5 |
| Msa0749890 | AT4G05050.4 | 24.490 | 147 | 106 | 2 | 36 | 182 | 7 | 148 | 1.32e-11 | 63.5 |
| Msa0749890 | AT3G43950.1 | 33.803 | 142 | 77 | 5 | 331 | 468 | 78 | 206 | 1.69e-11 | 64.7 |
| Msa0749890 | AT2G35635.1 | 26.712 | 146 | 102 | 3 | 36 | 181 | 7 | 147 | 3.11e-11 | 62.4 |
| Msa0749890 | AT4G02890.2 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0749890 | AT4G02890.2 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0749890 | AT4G02890.1 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0749890 | AT4G02890.1 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0749890 | AT4G05050.2 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0749890 | AT4G05050.2 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0749890 | AT4G05050.1 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0749890 | AT4G05050.1 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0749890 | AT4G05050.3 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0749890 | AT4G05050.3 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
Find 147 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTGGTAGCAATGATTTC+TGG | 0.116857 | 5_2:+3366934 | None:intergenic |
| GAAGAAAACCAGTCCATATT+TGG | 0.218354 | 5_2:-3366783 | Msa0749890:three_prime_UTR |
| GCACATTTGATTGGCTTTAC+TGG | 0.236333 | 5_2:-3367208 | Msa0749890:CDS |
| ATAGAGCTTCTGAAATATTA+TGG | 0.291106 | 5_2:-3367116 | Msa0749890:CDS |
| TAATAATCCGCGTGGATTGC+CGG | 0.312705 | 5_2:-3368524 | Msa0749890:CDS |
| AGAAGTTGCGGCTTATATAT+TGG | 0.319276 | 5_2:-3368443 | Msa0749890:CDS |
| TCCATATTTGGATGGACTTA+AGG | 0.329114 | 5_2:-3366771 | Msa0749890:three_prime_UTR |
| TACTGGTAATGTTGTTCATT+TGG | 0.334044 | 5_2:-3369157 | Msa0749890:CDS |
| TGGTAAGAGGTGTTCTAATC+AGG | 0.334243 | 5_2:-3366729 | Msa0749890:three_prime_UTR |
| GCCTGGTAGCAATGATTTCT+GGG | 0.343431 | 5_2:+3366935 | None:intergenic |
| ACCTTAAGTCCATCCAAATA+TGG | 0.345436 | 5_2:+3366770 | None:intergenic |
| ATCCTAGGGTTCACGAAAAT+CGG | 0.363297 | 5_2:+3368721 | None:intergenic |
| TCCGCGTGGATTGCCGGTTT+CGG | 0.363471 | 5_2:-3368518 | Msa0749890:CDS |
| GTGGGGATTGTGGCTCTTTG+AGG | 0.363682 | 5_2:-3368309 | Msa0749890:CDS |
| TGGTGTTCCGCCTACGGTTA+TGG | 0.367323 | 5_2:-3368368 | Msa0749890:CDS |
| TTGAAGATTGCACATTTGAT+TGG | 0.370246 | 5_2:-3367217 | Msa0749890:CDS |
| AAGCAAAATCTAGTTTCTAA+TGG | 0.377281 | 5_2:-3369228 | Msa0749890:CDS |
| ACCAAACGCGGTCCAGCCTT+TGG | 0.378332 | 5_2:+3368415 | None:intergenic |
| CCCTCACCATTCACCGAAAC+CGG | 0.379422 | 5_2:+3368505 | None:intergenic |
| GCCATTGGTTCCTCATCAAT+TGG | 0.383037 | 5_2:+3368550 | None:intergenic |
| CGAATTTGTATCGCAGATCA+TGG | 0.384306 | 5_2:-3366892 | Msa0749890:CDS |
| TCCAAAGGCTGGACCGCGTT+TGG | 0.385239 | 5_2:-3368416 | Msa0749890:CDS |
| GGATTGCCGGTTTCGGTGAA+TGG | 0.392525 | 5_2:-3368511 | Msa0749890:CDS |
| CCACAATGTTGTTGAAGAAA+GGG | 0.392633 | 5_2:-3367052 | Msa0749890:CDS |
| ATGATAGATGCAACTTTCAA+TGG | 0.393750 | 5_2:-3368673 | Msa0749890:CDS |
| GATGGTAATTGTGAGGATAT+TGG | 0.395024 | 5_2:-3368244 | Msa0749890:CDS |
| AAACAATATAAGGAGGTGAT+TGG | 0.396649 | 5_2:+3366668 | None:intergenic |
| TCCACAATGTTGTTGAAGAA+AGG | 0.400392 | 5_2:-3367053 | Msa0749890:CDS |
| TTGAAGAGAGGGACAAAGGT+TGG | 0.402804 | 5_2:-3368481 | Msa0749890:CDS |
| CAGAAGTTTATGAGTAATGA+TGG | 0.410311 | 5_2:-3368262 | Msa0749890:CDS |
| TCAACTGTATCGGGAGAGTA+TGG | 0.410892 | 5_2:+3367170 | None:intergenic |
| GAGCCACAATCCCCACCATC+AGG | 0.414679 | 5_2:+3368316 | None:intergenic |
| GTTCCCTCAGAAGATCTAAC+AGG | 0.417109 | 5_2:+3368631 | None:intergenic |
| TAGGAATTGTATTAAAAGAA+AGG | 0.420136 | 5_2:-3369037 | Msa0749890:CDS |
| GCTGGACCGCGTTTGGTGTC+TGG | 0.423380 | 5_2:-3368409 | Msa0749890:CDS |
| AGGAATTGTATTAAAAGAAA+GGG | 0.424400 | 5_2:-3369036 | Msa0749890:CDS |
| GAATCAGGATGAGGTTGTTA+AGG | 0.426840 | 5_2:-3368782 | Msa0749890:CDS |
| ATAGGAACGTTGCACATCTT+AGG | 0.430624 | 5_2:-3369056 | Msa0749890:CDS |
| AAATGGTGACTTACTTTCTC+AGG | 0.430834 | 5_2:+3368070 | None:intergenic |
| AGTGTTCTAGCACTCTCAAC+TGG | 0.433384 | 5_2:+3367083 | None:intergenic |
| CTTAAGGTTGTTGTATAAGA+AGG | 0.434772 | 5_2:-3366755 | Msa0749890:three_prime_UTR |
| CTCTTTGAGGATGGATCATA+AGG | 0.440712 | 5_2:-3368296 | Msa0749890:CDS |
| AAGACAATAACCATGATCAA+TGG | 0.441498 | 5_2:+3368093 | None:intergenic |
| ATACTCTCTGGATGCTGAAA+AGG | 0.444836 | 5_2:-3367141 | Msa0749890:CDS |
| GAATTTGAATAATCAGAATC+AGG | 0.447450 | 5_2:-3368797 | Msa0749890:CDS |
| AACAATATAAGGAGGTGATT+GGG | 0.456381 | 5_2:+3366669 | None:intergenic |
| CTGCTCATTCCCATTGATCA+TGG | 0.456539 | 5_2:-3368103 | Msa0749890:CDS |
| AGCTTCTGAAATATTATGGT+TGG | 0.458037 | 5_2:-3367112 | Msa0749890:CDS |
| CAGATCATGGATTCCCGCCT+TGG | 0.466401 | 5_2:-3366879 | Msa0749890:CDS |
| CCGGTTTCGGTGAATGGTGA+GGG | 0.469852 | 5_2:-3368505 | Msa0749890:CDS |
| GGATTGTGGCTCTTTGAGGA+TGG | 0.473673 | 5_2:-3368305 | Msa0749890:CDS |
| TACCCTGATGGTGGGGATTG+TGG | 0.474991 | 5_2:-3368319 | Msa0749890:CDS |
| GCTTCTGAAATATTATGGTT+GGG | 0.475469 | 5_2:-3367111 | Msa0749890:CDS |
| CGCGGATTATTAACCGCCAT+TGG | 0.475646 | 5_2:+3368535 | None:intergenic |
| TGGTGTTACTGCTCCGTCTA+CGG | 0.482678 | 5_2:+3369326 | None:intergenic |
| AGACAATAACCATGATCAAT+GGG | 0.483074 | 5_2:+3368094 | None:intergenic |
| TATATGTAATCAACTGTATC+GGG | 0.487936 | 5_2:+3367161 | None:intergenic |
| GTTAGATCTTCTGAGGGAAC+AGG | 0.492026 | 5_2:-3368628 | Msa0749890:CDS |
| TATAAGAAGGTGATGGTAAG+AGG | 0.499120 | 5_2:-3366742 | Msa0749890:three_prime_UTR |
| AATTTGAGTTTCAGATTGAT+CGG | 0.502943 | 5_2:-3369080 | Msa0749890:CDS |
| TTGAAGAAAGGGGTTGAGAG+AGG | 0.503562 | 5_2:-3367041 | Msa0749890:CDS |
| CGTTTAATTACCCTGATGGT+GGG | 0.504414 | 5_2:-3368327 | Msa0749890:CDS |
| GCGAAAAGCTTGATGATAAG+AGG | 0.505944 | 5_2:-3368963 | Msa0749890:CDS |
| CTGATATACGTCACCGTAGA+CGG | 0.506918 | 5_2:-3369339 | Msa0749890:CDS |
| GTATATGTAATCAACTGTAT+CGG | 0.506999 | 5_2:+3367160 | None:intergenic |
| AAATCAGATTCCTCCGTGCC+TGG | 0.508144 | 5_2:+3366918 | None:intergenic |
| GGGATTGAAGAGAGGGACAA+AGG | 0.509599 | 5_2:-3368485 | Msa0749890:CDS |
| TGTTCTAATCAGGGACATAT+AGG | 0.511537 | 5_2:-3366719 | Msa0749890:three_prime_UTR |
| TTGTTTAGAAAAGAGTCAAA+TGG | 0.514272 | 5_2:-3368133 | Msa0749890:CDS |
| GTAATAATATGCAATCTCTT+CGG | 0.516077 | 5_2:+3366695 | None:intergenic |
| ATGGTGAGGGATTGAAGAGA+GGG | 0.516819 | 5_2:-3368492 | Msa0749890:CDS |
| TTTCGACAGCTCACCAAGGC+GGG | 0.517562 | 5_2:+3366866 | None:intergenic |
| TAAGAATGGCGAATGCAGAT+AGG | 0.518671 | 5_2:-3368171 | Msa0749890:CDS |
| CAATTGCATCAGTGAAAATG+AGG | 0.519789 | 5_2:-3369281 | Msa0749890:CDS |
| AAAGAGTACGGTGTAACTAC+TGG | 0.519841 | 5_2:-3369174 | Msa0749890:CDS |
| CGTTGGAAGCATCATGTGTA+GGG | 0.519995 | 5_2:-3367003 | Msa0749890:CDS |
| AGTTGATTACATATACTCTC+TGG | 0.522946 | 5_2:-3367153 | Msa0749890:CDS |
| GCGAATGCAGATAGGCATGC+AGG | 0.523425 | 5_2:-3368163 | Msa0749890:CDS |
| GCCGGTTTCGGTGAATGGTG+AGG | 0.524007 | 5_2:-3368506 | Msa0749890:CDS |
| CATGATGCTTCCAACGGCAT+AGG | 0.525963 | 5_2:+3367010 | None:intergenic |
| CACAATGTTGTTGAAGAAAG+GGG | 0.526814 | 5_2:-3367051 | Msa0749890:CDS |
| ATATTGGATCATCCAAAGGC+TGG | 0.527791 | 5_2:-3368427 | Msa0749890:CDS |
| CCCTTTCTTCAACAACATTG+TGG | 0.535835 | 5_2:+3367052 | None:intergenic |
| ATCTTATGCACCTCTTGCAC+AGG | 0.541451 | 5_2:+3368208 | None:intergenic |
| AAGGTTATAGAACAACCCTC+TGG | 0.544988 | 5_2:-3368763 | Msa0749890:CDS |
| TCAGATTCCAACACACGCAT+TGG | 0.545912 | 5_2:+3369306 | None:intergenic |
| TGTATTAAAAGAAAGGGGAA+AGG | 0.545961 | 5_2:-3369030 | Msa0749890:CDS |
| TTGGTGTCTGGTGAAGCGAT+TGG | 0.546477 | 5_2:-3368397 | Msa0749890:CDS |
| AGTTTCAGATTGATCGGCAT+AGG | 0.546957 | 5_2:-3369074 | Msa0749890:CDS |
| GGAATTGTATTAAAAGAAAG+GGG | 0.547344 | 5_2:-3369035 | Msa0749890:CDS |
| AGGAGCTGTGAGAGAAGTTG+CGG | 0.549114 | 5_2:-3368455 | Msa0749890:CDS |
| AAGTCCATCCAAATATGGAC+TGG | 0.551955 | 5_2:+3366775 | None:intergenic |
| CAGTGTGCTTGATATAAGAA+TGG | 0.555819 | 5_2:-3368185 | Msa0749890:CDS |
| ATGATGCTTCCAACGGCATA+GGG | 0.557381 | 5_2:+3367011 | None:intergenic |
| GAAATCATTGCTACCAGGCA+CGG | 0.558584 | 5_2:-3366931 | Msa0749890:CDS |
| TAAACCTGTTAGATCTTCTG+AGG | 0.559006 | 5_2:-3368635 | Msa0749890:CDS |
| TTGAGGATGGATCATAAGGT+GGG | 0.562337 | 5_2:-3368292 | Msa0749890:CDS |
| GGTCTCACTCCCTATGCCGT+TGG | 0.563252 | 5_2:-3367020 | Msa0749890:CDS |
| AGAGGGACAAAGGTTGGAGA+AGG | 0.563732 | 5_2:-3368475 | Msa0749890:CDS |
| GAATAATCAGAATCAGGATG+AGG | 0.566712 | 5_2:-3368791 | Msa0749890:CDS |
| AATGGTGAGGGATTGAAGAG+AGG | 0.566744 | 5_2:-3368493 | Msa0749890:CDS |
| CCGTTGGAAGCATCATGTGT+AGG | 0.567994 | 5_2:-3367004 | Msa0749890:CDS |
| GCGTTTAATTACCCTGATGG+TGG | 0.572883 | 5_2:-3368328 | Msa0749890:CDS |
| TACTTCATGCAAGATTTCAA+AGG | 0.573102 | 5_2:-3368598 | Msa0749890:CDS |
| GCCAATTGATGAGGAACCAA+TGG | 0.574717 | 5_2:-3368551 | Msa0749890:CDS |
| TACGGTGACGTATATCAGAA+TGG | 0.576837 | 5_2:+3369344 | None:intergenic |
| GCCCAGAAATCATTGCTACC+AGG | 0.583800 | 5_2:-3366936 | Msa0749890:CDS |
| GGTAAGAGGTGTTCTAATCA+GGG | 0.586502 | 5_2:-3366728 | Msa0749890:three_prime_UTR |
| AGATCTTCTGAGGGAACAGG+TGG | 0.592366 | 5_2:-3368625 | Msa0749890:CDS |
| GTTTAATTACCCTGATGGTG+GGG | 0.592966 | 5_2:-3368326 | Msa0749890:CDS |
| CATGCAAGATTTCAAAGGTG+TGG | 0.594948 | 5_2:-3368593 | Msa0749890:CDS |
| GAAGCGTTTAATTACCCTGA+TGG | 0.595781 | 5_2:-3368331 | Msa0749890:CDS |
| AAAACCAGTCCATATTTGGA+TGG | 0.597398 | 5_2:-3366779 | Msa0749890:three_prime_UTR |
| TTATATATTGGATCATCCAA+AGG | 0.598620 | 5_2:-3368431 | Msa0749890:CDS |
| TTTGAGGATGGATCATAAGG+TGG | 0.602051 | 5_2:-3368293 | Msa0749890:CDS |
| GTTGTTGTATAAGAAGGTGA+TGG | 0.602695 | 5_2:-3366749 | Msa0749890:three_prime_UTR |
| CGAATGCAGATAGGCATGCA+GGG | 0.605455 | 5_2:-3368162 | Msa0749890:CDS |
| GAGTATGGCTGACGTGCTTG+AGG | 0.611194 | 5_2:+3367185 | None:intergenic |
| TCTATCATATCCCATAGGAA+AGG | 0.618347 | 5_2:+3368688 | None:intergenic |
| AAACCTGTTAGATCTTCTGA+GGG | 0.622266 | 5_2:-3368634 | Msa0749890:CDS |
| CCTACACATGATGCTTCCAA+CGG | 0.625450 | 5_2:+3367004 | None:intergenic |
| GAACAAAGAATCAGTGATCG+AGG | 0.625787 | 5_2:-3366973 | Msa0749890:CDS |
| AGTAACACCAATGCGTGTGT+TGG | 0.628419 | 5_2:-3369313 | Msa0749890:CDS |
| TCAACAACATTGTGGAAATG+CGG | 0.628972 | 5_2:+3367060 | None:intergenic |
| AATGCGGTGATGAAAGAGTA+CGG | 0.631647 | 5_2:-3369186 | Msa0749890:CDS |
| AGCCACAATCCCCACCATCA+GGG | 0.637152 | 5_2:+3368317 | None:intergenic |
| TTGCATCTATCATATCCCAT+AGG | 0.637801 | 5_2:+3368683 | None:intergenic |
| TGAGGATGGATCATAAGGTG+GGG | 0.651663 | 5_2:-3368291 | Msa0749890:CDS |
| TCTTGCACAGGAAAAGCACC+AGG | 0.657475 | 5_2:+3368220 | None:intergenic |
| AATTGATGAGGAACCAATGG+CGG | 0.662251 | 5_2:-3368548 | Msa0749890:CDS |
| TGTGAGGACAATGTGTGGGA+AGG | 0.662882 | 5_2:-3369103 | Msa0749890:CDS |
| ATTGTTGTGAGGACAATGTG+TGG | 0.666886 | 5_2:-3369108 | Msa0749890:CDS |
| TTGTTGTGAGGACAATGTGT+GGG | 0.668421 | 5_2:-3369107 | Msa0749890:CDS |
| CACCGCACCATAACCGTAGG+CGG | 0.670788 | 5_2:+3368361 | None:intergenic |
| AATTGTGAGGATATTGGACC+TGG | 0.674707 | 5_2:-3368238 | Msa0749890:CDS |
| TTCCGCCTACGGTTATGGTG+CGG | 0.680938 | 5_2:-3368363 | Msa0749890:CDS |
| ATCATTGCTACCAGGCACGG+AGG | 0.695943 | 5_2:-3366928 | Msa0749890:CDS |
| ATTTCGACAGCTCACCAAGG+CGG | 0.700271 | 5_2:+3366865 | None:intergenic |
| TGGATTCGCTTGAACAACGA+CGG | 0.702171 | 5_2:+3369364 | None:intergenic |
| AAACACCGCACCATAACCGT+AGG | 0.703540 | 5_2:+3368358 | None:intergenic |
| GATCTTCTGAGGGAACAGGT+GGG | 0.712393 | 5_2:-3368624 | Msa0749890:CDS |
| ATGGCGGTTAATAATCCGCG+TGG | 0.713372 | 5_2:-3368532 | Msa0749890:CDS |
| GAGTAATGATGGTAATTGTG+AGG | 0.714535 | 5_2:-3368251 | Msa0749890:CDS |
| TCTATTTCGACAGCTCACCA+AGG | 0.716631 | 5_2:+3366862 | None:intergenic |
| ACCGAAACCGGCAATCCACG+CGG | 0.729544 | 5_2:+3368517 | None:intergenic |
| AGAATTATCTCGTAACAATG+CGG | 0.734694 | 5_2:-3369202 | Msa0749890:CDS |
| GCTTCACCAGACACCAAACG+CGG | 0.759039 | 5_2:+3368403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATCTTATTGTTAAAAAAT+CGG | - | chr5_2:3367167-3367186 | Msa0749890:CDS | 15.0% |
| !! | AATATTGAATATTGAATCTA+CGG | - | chr5_2:3368333-3368352 | Msa0749890:CDS | 15.0% |
| !!! | TTTTCCGATTCTTTTAAAAT+CGG | + | chr5_2:3366667-3366686 | None:intergenic | 20.0% |
| !! | TAGGAATTGTATTAAAAGAA+AGG | - | chr5_2:3367032-3367051 | Msa0749890:CDS | 20.0% |
| !! | AGGAATTGTATTAAAAGAAA+GGG | - | chr5_2:3367033-3367052 | Msa0749890:CDS | 20.0% |
| !! | AATAAAACAAGAATGTGAAA+TGG | + | chr5_2:3368019-3368038 | None:intergenic | 20.0% |
| !! | AAAACATTATAATACTGCAT+AGG | + | chr5_2:3368044-3368063 | None:intergenic | 20.0% |
| !! | TATACAAAGTTAGCATAAAA+AGG | + | chr5_2:3368275-3368294 | None:intergenic | 20.0% |
| !! | CCAATAAAAATATATCTCTT+AGG | + | chr5_2:3368378-3368397 | None:intergenic | 20.0% |
| !!! | CCTAAGAGATATATTTTTAT+TGG | - | chr5_2:3368375-3368394 | Msa0749890:CDS | 20.0% |
| !! | AAGCAAAATCTAGTTTCTAA+TGG | - | chr5_2:3366841-3366860 | Msa0749890:three_prime_UTR | 25.0% |
| !! | ATATGATTTTCATTGTTGTG+AGG | - | chr5_2:3366950-3366969 | Msa0749890:CDS | 25.0% |
| !! | AATTTGAGTTTCAGATTGAT+CGG | - | chr5_2:3366989-3367008 | Msa0749890:CDS | 25.0% |
| ! | GGAATTGTATTAAAAGAAAG+GGG | - | chr5_2:3367034-3367053 | Msa0749890:CDS | 25.0% |
| !!! | TGCTACTTTTGTTCATAATA+AGG | - | chr5_2:3367200-3367219 | Msa0749890:CDS | 25.0% |
| ! | GAATTTGAATAATCAGAATC+AGG | - | chr5_2:3367272-3367291 | Msa0749890:intron | 25.0% |
| ! | AACAAAAAATCAAAACCAGA+GGG | + | chr5_2:3367324-3367343 | None:intergenic | 25.0% |
| ! | TAACAAAAAATCAAAACCAG+AGG | + | chr5_2:3367325-3367344 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAATTGATCCTA+GGG | + | chr5_2:3367365-3367384 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAAATTGATCCT+AGG | + | chr5_2:3367366-3367385 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTTCCTTTCCTA+TGG | - | chr5_2:3367370-3367389 | Msa0749890:intron | 25.0% |
| !!! | CAATTTTTTTCCTTTCCTAT+GGG | - | chr5_2:3367371-3367390 | Msa0749890:intron | 25.0% |
| ! | ACTTTCAATGGTTTGAAAAA+AGG | - | chr5_2:3367408-3367427 | Msa0749890:intron | 25.0% |
| ! | TTATATATTGGATCATCCAA+AGG | - | chr5_2:3367638-3367657 | Msa0749890:intron | 25.0% |
| ! | TTGTTTAGAAAAGAGTCAAA+TGG | - | chr5_2:3367936-3367955 | Msa0749890:intron | 25.0% |
| !! | AATGTTTTCTATGTTCTGTT+TGG | - | chr5_2:3368056-3368075 | Msa0749890:intron | 25.0% |
| !! | TCCATAGTATAGATCTATTT+TGG | - | chr5_2:3368163-3368182 | Msa0749890:CDS | 25.0% |
| ! | TCCAAAATAGATCTATACTA+TGG | + | chr5_2:3368167-3368186 | None:intergenic | 25.0% |
| !! | TAACCATGTTCGTTATATTT+TGG | - | chr5_2:3368442-3368461 | Msa0749890:CDS | 25.0% |
| ! | AAAAATCTTGCAATAACTAC+TGG | + | chr5_2:3368574-3368593 | None:intergenic | 25.0% |
| ! | AACAAGTTATAAAAGTAGTC+TGG | + | chr5_2:3368638-3368657 | None:intergenic | 25.0% |
| !! | TTCTTATACATCATTTTGCA+AGG | - | chr5_2:3368669-3368688 | Msa0749890:CDS | 25.0% |
| ! | TATATGTAATCAACTGTATC+GGG | + | chr5_2:3368911-3368930 | None:intergenic | 25.0% |
| ! | GTATATGTAATCAACTGTAT+CGG | + | chr5_2:3368912-3368931 | None:intergenic | 25.0% |
| !!! | ATAGAGCTTCTGAAATATTA+TGG | - | chr5_2:3368953-3368972 | Msa0749890:CDS | 25.0% |
| !! | TTTTTCTTTGTCTGATTCAT+AGG | - | chr5_2:3369235-3369254 | Msa0749890:CDS | 25.0% |
| ! | GTAATAATATGCAATCTCTT+CGG | + | chr5_2:3369377-3369396 | None:intergenic | 25.0% |
| !! | GAGACCGATTTTAAAAGAAT+CGG | - | chr5_2:3366660-3366679 | Msa0749890:three_prime_UTR | 30.0% |
| AAACACGCAAAAATGTTTCA+TGG | - | chr5_2:3366815-3366834 | Msa0749890:three_prime_UTR | 30.0% | |
| AGAATTATCTCGTAACAATG+CGG | - | chr5_2:3366867-3366886 | Msa0749890:CDS | 30.0% | |
| ! | TACTGGTAATGTTGTTCATT+TGG | - | chr5_2:3366912-3366931 | Msa0749890:CDS | 30.0% |
| TGTATTAAAAGAAAGGGGAA+AGG | - | chr5_2:3367039-3367058 | Msa0749890:CDS | 30.0% | |
| ATGATAGATGCAACTTTCAA+TGG | - | chr5_2:3367396-3367415 | Msa0749890:intron | 30.0% | |
| TACTTCATGCAAGATTTCAA+AGG | - | chr5_2:3367471-3367490 | Msa0749890:intron | 30.0% | |
| !! | TGTTTTTAAGCCAATTGATG+AGG | - | chr5_2:3367509-3367528 | Msa0749890:intron | 30.0% |
| CAGAAGTTTATGAGTAATGA+TGG | - | chr5_2:3367807-3367826 | Msa0749890:intron | 30.0% | |
| AGACAATAACCATGATCAAT+GGG | + | chr5_2:3367978-3367997 | None:intergenic | 30.0% | |
| AAGACAATAACCATGATCAA+TGG | + | chr5_2:3367979-3367998 | None:intergenic | 30.0% | |
| ! | TCTATACTATGGATTGACAT+CGG | + | chr5_2:3368156-3368175 | None:intergenic | 30.0% |
| GAGATTCATCGTAATAAATC+GGG | + | chr5_2:3368209-3368228 | None:intergenic | 30.0% | |
| CGAGATTCATCGTAATAAAT+CGG | + | chr5_2:3368210-3368229 | None:intergenic | 30.0% | |
| TTACTTAAACTTAGTGCAGT+CGG | - | chr5_2:3368248-3368267 | Msa0749890:CDS | 30.0% | |
| CATCCAAAATATAACGAACA+TGG | + | chr5_2:3368448-3368467 | None:intergenic | 30.0% | |
| GATGTCAGTTTAGACTTATA+TGG | - | chr5_2:3368524-3368543 | Msa0749890:CDS | 30.0% | |
| GAACTTAATACGTATGTCAT+AGG | - | chr5_2:3368759-3368778 | Msa0749890:CDS | 30.0% | |
| TTGAAGATTGCACATTTGAT+TGG | - | chr5_2:3368852-3368871 | Msa0749890:CDS | 30.0% | |
| AGTTGATTACATATACTCTC+TGG | - | chr5_2:3368916-3368935 | Msa0749890:CDS | 30.0% | |
| !! | AGCTTCTGAAATATTATGGT+TGG | - | chr5_2:3368957-3368976 | Msa0749890:CDS | 30.0% |
| !! | GCTTCTGAAATATTATGGTT+GGG | - | chr5_2:3368958-3368977 | Msa0749890:CDS | 30.0% |
| CTTAAGGTTGTTGTATAAGA+AGG | - | chr5_2:3369314-3369333 | Msa0749890:CDS | 30.0% | |
| AACAATATAAGGAGGTGATT+GGG | + | chr5_2:3369403-3369422 | None:intergenic | 30.0% | |
| AAACAATATAAGGAGGTGAT+TGG | + | chr5_2:3369404-3369423 | None:intergenic | 30.0% | |
| !! | CACCTCCTTATATTGTTTTT+CGG | - | chr5_2:3369406-3369425 | Msa0749890:CDS | 30.0% |
| !! | ACCTCCTTATATTGTTTTTC+GGG | - | chr5_2:3369407-3369426 | Msa0749890:CDS | 30.0% |
| CAATCCCGAAAAACAATATA+AGG | + | chr5_2:3369414-3369433 | None:intergenic | 30.0% | |
| CAATTGCATCAGTGAAAATG+AGG | - | chr5_2:3366788-3366807 | Msa0749890:three_prime_UTR | 35.0% | |
| !!! | AGGTTTTGTTGATCTTGTTG+AGG | - | chr5_2:3367059-3367078 | Msa0749890:CDS | 35.0% |
| !!! | GAACAAGAGTTTTTTTGCAG+CGG | - | chr5_2:3367084-3367103 | Msa0749890:CDS | 35.0% |
| GAATAATCAGAATCAGGATG+AGG | - | chr5_2:3367278-3367297 | Msa0749890:intron | 35.0% | |
| TCTATCATATCCCATAGGAA+AGG | + | chr5_2:3367384-3367403 | None:intergenic | 35.0% | |
| TTGCATCTATCATATCCCAT+AGG | + | chr5_2:3367389-3367408 | None:intergenic | 35.0% | |
| TAAACCTGTTAGATCTTCTG+AGG | - | chr5_2:3367434-3367453 | Msa0749890:intron | 35.0% | |
| AAACCTGTTAGATCTTCTGA+GGG | - | chr5_2:3367435-3367454 | Msa0749890:intron | 35.0% | |
| AGAAGTTGCGGCTTATATAT+TGG | - | chr5_2:3367626-3367645 | Msa0749890:intron | 35.0% | |
| GAGTAATGATGGTAATTGTG+AGG | - | chr5_2:3367818-3367837 | Msa0749890:intron | 35.0% | |
| GATGGTAATTGTGAGGATAT+TGG | - | chr5_2:3367825-3367844 | Msa0749890:intron | 35.0% | |
| CAGTGTGCTTGATATAAGAA+TGG | - | chr5_2:3367884-3367903 | Msa0749890:intron | 35.0% | |
| AAATGGTGACTTACTTTCTC+AGG | + | chr5_2:3368002-3368021 | None:intergenic | 35.0% | |
| AATGACAAAAGATAAGCGAC+TGG | + | chr5_2:3368299-3368318 | None:intergenic | 35.0% | |
| TCAACAACATTGTGGAAATG+CGG | + | chr5_2:3369012-3369031 | None:intergenic | 35.0% | |
| TCCACAATGTTGTTGAAGAA+AGG | - | chr5_2:3369016-3369035 | Msa0749890:CDS | 35.0% | |
| CCACAATGTTGTTGAAGAAA+GGG | - | chr5_2:3369017-3369036 | Msa0749890:CDS | 35.0% | |
| CACAATGTTGTTGAAGAAAG+GGG | - | chr5_2:3369018-3369037 | Msa0749890:CDS | 35.0% | |
| GAAGAAAACCAGTCCATATT+TGG | - | chr5_2:3369286-3369305 | Msa0749890:CDS | 35.0% | |
| AAAACCAGTCCATATTTGGA+TGG | - | chr5_2:3369290-3369309 | Msa0749890:CDS | 35.0% | |
| ! | TCCATATTTGGATGGACTTA+AGG | - | chr5_2:3369298-3369317 | Msa0749890:CDS | 35.0% |
| ACCTTAAGTCCATCCAAATA+TGG | + | chr5_2:3369302-3369321 | None:intergenic | 35.0% | |
| GTTGTTGTATAAGAAGGTGA+TGG | - | chr5_2:3369320-3369339 | Msa0749890:CDS | 35.0% | |
| ! | TATAAGAAGGTGATGGTAAG+AGG | - | chr5_2:3369327-3369346 | Msa0749890:CDS | 35.0% |
| TGTTCTAATCAGGGACATAT+AGG | - | chr5_2:3369350-3369369 | Msa0749890:CDS | 35.0% | |
| TCCCGAAAAACAATATAAGG+AGG | + | chr5_2:3369411-3369430 | None:intergenic | 35.0% | |
| TACGGTGACGTATATCAGAA+TGG | + | chr5_2:3366728-3366747 | None:intergenic | 40.0% | |
| AATGCGGTGATGAAAGAGTA+CGG | - | chr5_2:3366883-3366902 | Msa0749890:CDS | 40.0% | |
| ! | AAAGAGTACGGTGTAACTAC+TGG | - | chr5_2:3366895-3366914 | Msa0749890:CDS | 40.0% |
| ATTGTTGTGAGGACAATGTG+TGG | - | chr5_2:3366961-3366980 | Msa0749890:CDS | 40.0% | |
| TTGTTGTGAGGACAATGTGT+GGG | - | chr5_2:3366962-3366981 | Msa0749890:CDS | 40.0% | |
| AGTTTCAGATTGATCGGCAT+AGG | - | chr5_2:3366995-3367014 | Msa0749890:CDS | 40.0% | |
| ATAGGAACGTTGCACATCTT+AGG | - | chr5_2:3367013-3367032 | Msa0749890:CDS | 40.0% | |
| ! | GCGAAAAGCTTGATGATAAG+AGG | - | chr5_2:3367106-3367125 | Msa0749890:CDS | 40.0% |
| GAATCAGGATGAGGTTGTTA+AGG | - | chr5_2:3367287-3367306 | Msa0749890:intron | 40.0% | |
| AAGGTTATAGAACAACCCTC+TGG | - | chr5_2:3367306-3367325 | Msa0749890:intron | 40.0% | |
| ATCCTAGGGTTCACGAAAAT+CGG | + | chr5_2:3367351-3367370 | None:intergenic | 40.0% | |
| CATGCAAGATTTCAAAGGTG+TGG | - | chr5_2:3367476-3367495 | Msa0749890:intron | 40.0% | |
| AATTGATGAGGAACCAATGG+CGG | - | chr5_2:3367521-3367540 | Msa0749890:intron | 40.0% | |
| ATATTGGATCATCCAAAGGC+TGG | - | chr5_2:3367642-3367661 | Msa0749890:intron | 40.0% | |
| ! | GAAGCGTTTAATTACCCTGA+TGG | - | chr5_2:3367738-3367757 | Msa0749890:intron | 40.0% |
| CGTTTAATTACCCTGATGGT+GGG | - | chr5_2:3367742-3367761 | Msa0749890:intron | 40.0% | |
| ! | GTTTAATTACCCTGATGGTG+GGG | - | chr5_2:3367743-3367762 | Msa0749890:intron | 40.0% |
| ! | CTCTTTGAGGATGGATCATA+AGG | - | chr5_2:3367773-3367792 | Msa0749890:intron | 40.0% |
| TTTGAGGATGGATCATAAGG+TGG | - | chr5_2:3367776-3367795 | Msa0749890:intron | 40.0% | |
| TTGAGGATGGATCATAAGGT+GGG | - | chr5_2:3367777-3367796 | Msa0749890:intron | 40.0% | |
| AATTGTGAGGATATTGGACC+TGG | - | chr5_2:3367831-3367850 | Msa0749890:intron | 40.0% | |
| TAAGAATGGCGAATGCAGAT+AGG | - | chr5_2:3367898-3367917 | Msa0749890:intron | 40.0% | |
| !! | GCACATTTGATTGGCTTTAC+TGG | - | chr5_2:3368861-3368880 | Msa0749890:CDS | 40.0% |
| ATACTCTCTGGATGCTGAAA+AGG | - | chr5_2:3368928-3368947 | Msa0749890:CDS | 40.0% | |
| CCCTTTCTTCAACAACATTG+TGG | + | chr5_2:3369020-3369039 | None:intergenic | 40.0% | |
| GAACAAAGAATCAGTGATCG+AGG | - | chr5_2:3369096-3369115 | Msa0749890:CDS | 40.0% | |
| CGAATTTGTATCGCAGATCA+TGG | - | chr5_2:3369177-3369196 | Msa0749890:CDS | 40.0% | |
| AAGTCCATCCAAATATGGAC+TGG | + | chr5_2:3369297-3369316 | None:intergenic | 40.0% | |
| !! | TGGTAAGAGGTGTTCTAATC+AGG | - | chr5_2:3369340-3369359 | Msa0749890:CDS | 40.0% |
| !! | GGTAAGAGGTGTTCTAATCA+GGG | - | chr5_2:3369341-3369360 | Msa0749890:CDS | 40.0% |
| TGGATTCGCTTGAACAACGA+CGG | + | chr5_2:3366708-3366727 | None:intergenic | 45.0% | |
| CTGATATACGTCACCGTAGA+CGG | - | chr5_2:3366730-3366749 | Msa0749890:three_prime_UTR | 45.0% | |
| AGTAACACCAATGCGTGTGT+TGG | - | chr5_2:3366756-3366775 | Msa0749890:three_prime_UTR | 45.0% | |
| TCAGATTCCAACACACGCAT+TGG | + | chr5_2:3366766-3366785 | None:intergenic | 45.0% | |
| !! | AACCGATTTTCGTGAACCCT+AGG | - | chr5_2:3367346-3367365 | Msa0749890:intron | 45.0% |
| GTTCCCTCAGAAGATCTAAC+AGG | + | chr5_2:3367441-3367460 | None:intergenic | 45.0% | |
| ! | GTTAGATCTTCTGAGGGAAC+AGG | - | chr5_2:3367441-3367460 | Msa0749890:intron | 45.0% |
| GCCAATTGATGAGGAACCAA+TGG | - | chr5_2:3367518-3367537 | Msa0749890:intron | 45.0% | |
| !! | GCCATTGGTTCCTCATCAAT+TGG | + | chr5_2:3367522-3367541 | None:intergenic | 45.0% |
| ! | TAATAATCCGCGTGGATTGC+CGG | - | chr5_2:3367545-3367564 | Msa0749890:intron | 45.0% |
| AATGGTGAGGGATTGAAGAG+AGG | - | chr5_2:3367576-3367595 | Msa0749890:intron | 45.0% | |
| ATGGTGAGGGATTGAAGAGA+GGG | - | chr5_2:3367577-3367596 | Msa0749890:intron | 45.0% | |
| TTGAAGAGAGGGACAAAGGT+TGG | - | chr5_2:3367588-3367607 | Msa0749890:intron | 45.0% | |
| GCGTTTAATTACCCTGATGG+TGG | - | chr5_2:3367741-3367760 | Msa0749890:intron | 45.0% | |
| TGAGGATGGATCATAAGGTG+GGG | - | chr5_2:3367778-3367797 | Msa0749890:intron | 45.0% | |
| ATCTTATGCACCTCTTGCAC+AGG | + | chr5_2:3367864-3367883 | None:intergenic | 45.0% | |
| CTGCTCATTCCCATTGATCA+TGG | - | chr5_2:3367966-3367985 | Msa0749890:intron | 45.0% | |
| ACTGACATCTGCATCTCAGT+TGG | + | chr5_2:3368513-3368532 | None:intergenic | 45.0% | |
| CTTCAGCAACTTCGTATGCA+TGG | + | chr5_2:3368719-3368738 | None:intergenic | 45.0% | |
| CATGCATACGAAGTTGCTGA+AGG | - | chr5_2:3368717-3368736 | Msa0749890:CDS | 45.0% | |
| TCAACTGTATCGGGAGAGTA+TGG | + | chr5_2:3368902-3368921 | None:intergenic | 45.0% | |
| AGTGTTCTAGCACTCTCAAC+TGG | + | chr5_2:3368989-3369008 | None:intergenic | 45.0% | |
| TTGAAGAAAGGGGTTGAGAG+AGG | - | chr5_2:3369028-3369047 | Msa0749890:CDS | 45.0% | |
| ATGATGCTTCCAACGGCATA+GGG | + | chr5_2:3369061-3369080 | None:intergenic | 45.0% | |
| CCTACACATGATGCTTCCAA+CGG | + | chr5_2:3369068-3369087 | None:intergenic | 45.0% | |
| !! | CGTTGGAAGCATCATGTGTA+GGG | - | chr5_2:3369066-3369085 | Msa0749890:CDS | 45.0% |
| GCCTGGTAGCAATGATTTCT+GGG | + | chr5_2:3369137-3369156 | None:intergenic | 45.0% | |
| TGCCTGGTAGCAATGATTTC+TGG | + | chr5_2:3369138-3369157 | None:intergenic | 45.0% | |
| GAAATCATTGCTACCAGGCA+CGG | - | chr5_2:3369138-3369157 | Msa0749890:CDS | 45.0% | |
| TCTATTTCGACAGCTCACCA+AGG | + | chr5_2:3369210-3369229 | None:intergenic | 45.0% | |
| !! | TGGTGTTACTGCTCCGTCTA+CGG | + | chr5_2:3366746-3366765 | None:intergenic | 50.0% |
| TGTGAGGACAATGTGTGGGA+AGG | - | chr5_2:3366966-3366985 | Msa0749890:CDS | 50.0% | |
| ! | AGATCTTCTGAGGGAACAGG+TGG | - | chr5_2:3367444-3367463 | Msa0749890:intron | 50.0% |
| ! | GATCTTCTGAGGGAACAGGT+GGG | - | chr5_2:3367445-3367464 | Msa0749890:intron | 50.0% |
| ! | CGCGGATTATTAACCGCCAT+TGG | + | chr5_2:3367537-3367556 | None:intergenic | 50.0% |
| ATGGCGGTTAATAATCCGCG+TGG | - | chr5_2:3367537-3367556 | Msa0749890:intron | 50.0% | |
| GGGATTGAAGAGAGGGACAA+AGG | - | chr5_2:3367584-3367603 | Msa0749890:intron | 50.0% | |
| AGAGGGACAAAGGTTGGAGA+AGG | - | chr5_2:3367594-3367613 | Msa0749890:intron | 50.0% | |
| AGGAGCTGTGAGAGAAGTTG+CGG | - | chr5_2:3367614-3367633 | Msa0749890:intron | 50.0% | |
| ! | TTGGTGTCTGGTGAAGCGAT+TGG | - | chr5_2:3367672-3367691 | Msa0749890:intron | 50.0% |
| !!! | GGTGAAGCGATTGGTTTTGC+TGG | - | chr5_2:3367681-3367700 | Msa0749890:intron | 50.0% |
| ! | TTTTGCTGGTGTTCCGCCTA+CGG | - | chr5_2:3367695-3367714 | Msa0749890:intron | 50.0% |
| AAACACCGCACCATAACCGT+AGG | + | chr5_2:3367714-3367733 | None:intergenic | 50.0% | |
| ! | GGATTGTGGCTCTTTGAGGA+TGG | - | chr5_2:3367764-3367783 | Msa0749890:intron | 50.0% |
| !! | TCTTGCACAGGAAAAGCACC+AGG | + | chr5_2:3367852-3367871 | None:intergenic | 50.0% |
| ! | TGGTGCTTTTCCTGTGCAAG+AGG | - | chr5_2:3367851-3367870 | Msa0749890:intron | 50.0% |
| CGAATGCAGATAGGCATGCA+GGG | - | chr5_2:3367907-3367926 | Msa0749890:intron | 50.0% | |
| GCATACGAAGTTGCTGAAGG+TGG | - | chr5_2:3368720-3368739 | Msa0749890:CDS | 50.0% | |
| CATGATGCTTCCAACGGCAT+AGG | + | chr5_2:3369062-3369081 | None:intergenic | 50.0% | |
| !! | CCGTTGGAAGCATCATGTGT+AGG | - | chr5_2:3369065-3369084 | Msa0749890:CDS | 50.0% |
| GCCCAGAAATCATTGCTACC+AGG | - | chr5_2:3369133-3369152 | Msa0749890:CDS | 50.0% | |
| AAATCAGATTCCTCCGTGCC+TGG | + | chr5_2:3369154-3369173 | None:intergenic | 50.0% | |
| ATTTCGACAGCTCACCAAGG+CGG | + | chr5_2:3369207-3369226 | None:intergenic | 50.0% | |
| !! | GGATTGCCGGTTTCGGTGAA+TGG | - | chr5_2:3367558-3367577 | Msa0749890:intron | 55.0% |
| CCCTCACCATTCACCGAAAC+CGG | + | chr5_2:3367567-3367586 | None:intergenic | 55.0% | |
| CCGGTTTCGGTGAATGGTGA+GGG | - | chr5_2:3367564-3367583 | Msa0749890:intron | 55.0% | |
| GCTTCACCAGACACCAAACG+CGG | + | chr5_2:3367669-3367688 | None:intergenic | 55.0% | |
| TGGTGTTCCGCCTACGGTTA+TGG | - | chr5_2:3367701-3367720 | Msa0749890:intron | 55.0% | |
| TTCCGCCTACGGTTATGGTG+CGG | - | chr5_2:3367706-3367725 | Msa0749890:intron | 55.0% | |
| !! | TACCCTGATGGTGGGGATTG+TGG | - | chr5_2:3367750-3367769 | Msa0749890:intron | 55.0% |
| AGCCACAATCCCCACCATCA+GGG | + | chr5_2:3367755-3367774 | None:intergenic | 55.0% | |
| GTGGGGATTGTGGCTCTTTG+AGG | - | chr5_2:3367760-3367779 | Msa0749890:intron | 55.0% | |
| GCGAATGCAGATAGGCATGC+AGG | - | chr5_2:3367906-3367925 | Msa0749890:intron | 55.0% | |
| GAGTATGGCTGACGTGCTTG+AGG | + | chr5_2:3368887-3368906 | None:intergenic | 55.0% | |
| ATCATTGCTACCAGGCACGG+AGG | - | chr5_2:3369141-3369160 | Msa0749890:CDS | 55.0% | |
| CAGATCATGGATTCCCGCCT+TGG | - | chr5_2:3369190-3369209 | Msa0749890:CDS | 55.0% | |
| TTTCGACAGCTCACCAAGGC+GGG | + | chr5_2:3369206-3369225 | None:intergenic | 55.0% | |
| !! | TCCGCGTGGATTGCCGGTTT+CGG | - | chr5_2:3367551-3367570 | Msa0749890:intron | 60.0% |
| ACCGAAACCGGCAATCCACG+CGG | + | chr5_2:3367555-3367574 | None:intergenic | 60.0% | |
| ! | GCCGGTTTCGGTGAATGGTG+AGG | - | chr5_2:3367563-3367582 | Msa0749890:intron | 60.0% |
| TCCAAAGGCTGGACCGCGTT+TGG | - | chr5_2:3367653-3367672 | Msa0749890:intron | 60.0% | |
| ACCAAACGCGGTCCAGCCTT+TGG | + | chr5_2:3367657-3367676 | None:intergenic | 60.0% | |
| CACCGCACCATAACCGTAGG+CGG | + | chr5_2:3367711-3367730 | None:intergenic | 60.0% | |
| GAGCCACAATCCCCACCATC+AGG | + | chr5_2:3367756-3367775 | None:intergenic | 60.0% | |
| GGTCTCACTCCCTATGCCGT+TGG | - | chr5_2:3369049-3369068 | Msa0749890:CDS | 60.0% | |
| !! | GCTGGACCGCGTTTGGTGTC+TGG | - | chr5_2:3367660-3367679 | Msa0749890:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 3366637 | 3369454 | 3366637 | ID=Msa0749890;Name=Msa0749890 |
| chr5_2 | mRNA | 3366637 | 3369454 | 3366637 | ID=Msa0749890-mRNA-1;Parent=Msa0749890;Name=Msa0749890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.5|1|1|1|2|226|582 |
| chr5_2 | exon | 3366637 | 3367240 | 3366637 | ID=Msa0749890-mRNA-1:exon:1190;Parent=Msa0749890-mRNA-1 |
| chr5_2 | exon | 3368084 | 3369454 | 3368084 | ID=Msa0749890-mRNA-1:exon:1189;Parent=Msa0749890-mRNA-1 |
| chr5_2 | CDS | 3368084 | 3369454 | 3368084 | ID=Msa0749890-mRNA-1:cds;Parent=Msa0749890-mRNA-1 |
| chr5_2 | CDS | 3366863 | 3367240 | 3366863 | ID=Msa0749890-mRNA-1:cds;Parent=Msa0749890-mRNA-1 |
| chr5_2 | three_prime_UTR | 3366637 | 3366862 | 3366637 | ID=Msa0749890-mRNA-1:three_prime_utr;Parent=Msa0749890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
