Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830460 | XP_003610975.2 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830460 | sp|Q9SGW8|P4KG2_ARATH | 57.119 | 590 | 205 | 6 | 1 | 582 | 1 | 550 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830460 | G7K9A8 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0830460 | 0.829044 | 6.413495e-55 | -8.615850e-47 |
| Msa0028420 | Msa0830460 | 0.813074 | 3.077202e-51 | -8.615850e-47 |
| Msa0030370 | Msa0830460 | 0.822433 | 2.375006e-53 | -8.615850e-47 |
| Msa0052480 | Msa0830460 | 0.820447 | 6.825400e-53 | -8.615850e-47 |
| Msa0054690 | Msa0830460 | 0.820626 | 6.211127e-53 | -8.615850e-47 |
| Msa0067330 | Msa0830460 | 0.810856 | 9.362457e-51 | -8.615850e-47 |
| Msa0081570 | Msa0830460 | 0.812817 | 3.503184e-51 | -8.615850e-47 |
| Msa0090400 | Msa0830460 | 0.816805 | 4.577091e-52 | -8.615850e-47 |
| Msa0094780 | Msa0830460 | 0.832274 | 1.038029e-55 | -8.615850e-47 |
| Msa0624900 | Msa0830460 | 0.808196 | 3.487755e-50 | -8.615850e-47 |
| Msa0626450 | Msa0830460 | 0.822745 | 2.009739e-53 | -8.615850e-47 |
| Msa0626490 | Msa0830460 | 0.820696 | 5.983088e-53 | -8.615850e-47 |
| Msa0644410 | Msa0830460 | 0.804830 | 1.789333e-49 | -8.615850e-47 |
| Msa0658640 | Msa0830460 | 0.842345 | 2.737061e-58 | -8.615850e-47 |
| Msa0661150 | Msa0830460 | 0.804715 | 1.891175e-49 | -8.615850e-47 |
| Msa0664090 | Msa0830460 | 0.803660 | 3.135569e-49 | -8.615850e-47 |
| Msa0664150 | Msa0830460 | 0.803110 | 4.076817e-49 | -8.615850e-47 |
| Msa0664600 | Msa0830460 | 0.820407 | 6.973237e-53 | -8.615850e-47 |
| Msa0666700 | Msa0830460 | 0.806816 | 6.844847e-50 | -8.615850e-47 |
| Msa0683570 | Msa0830460 | 0.828186 | 1.033909e-54 | -8.615850e-47 |
| Msa0702810 | Msa0830460 | 0.801275 | 9.725448e-49 | -8.615850e-47 |
| Msa0703600 | Msa0830460 | 0.832413 | 9.586288e-56 | -8.615850e-47 |
| Msa0709200 | Msa0830460 | 0.834141 | 3.557549e-56 | -8.615850e-47 |
| Msa0709440 | Msa0830460 | 0.803146 | 4.006817e-49 | -8.615850e-47 |
| Msa0712110 | Msa0830460 | 0.822057 | 2.903380e-53 | -8.615850e-47 |
| Msa0721080 | Msa0830460 | 0.807916 | 4.000392e-50 | -8.615850e-47 |
| Msa0735780 | Msa0830460 | 0.815237 | 1.024515e-51 | -8.615850e-47 |
| Msa0749890 | Msa0830460 | 0.951701 | 1.171388e-109 | -8.615850e-47 |
| Msa0755760 | Msa0830460 | 0.803628 | 3.183099e-49 | -8.615850e-47 |
| Msa0756590 | Msa0830460 | 0.829728 | 4.376365e-55 | -8.615850e-47 |
| Msa0783530 | Msa0830460 | 0.810557 | 1.086346e-50 | -8.615850e-47 |
| Msa0795870 | Msa0830460 | 0.827462 | 1.544078e-54 | -8.615850e-47 |
| Msa0824450 | Msa0830460 | 0.830318 | 3.141266e-55 | -8.615850e-47 |
| Msa0828970 | Msa0830460 | 0.806358 | 8.552443e-50 | -8.615850e-47 |
| Msa0830130 | Msa0830460 | 0.985696 | 2.248611e-164 | -8.615850e-47 |
| Msa0830460 | Msa0833650 | 0.837281 | 5.701704e-57 | -8.615850e-47 |
| Msa0830460 | Msa0835900 | 0.807108 | 5.937121e-50 | -8.615850e-47 |
| Msa0830460 | Msa0861510 | 0.801776 | 7.675664e-49 | -8.615850e-47 |
| Msa0830460 | Msa0861600 | 0.802780 | 4.768671e-49 | -8.615850e-47 |
| Msa0830460 | Msa0945110 | 0.811484 | 6.842771e-51 | -8.615850e-47 |
| Msa0830460 | Msa0981320 | 0.800547 | 1.369271e-48 | -8.615850e-47 |
| Msa0830460 | Msa0997920 | 0.849583 | 2.946978e-60 | -8.615850e-47 |
| Msa0830460 | Msa1019430 | 0.800559 | 1.361743e-48 | -8.615850e-47 |
| Msa0830460 | Msa1042160 | 0.810875 | 9.275167e-51 | -8.615850e-47 |
| Msa0830460 | Msa1042190 | 0.812192 | 4.796995e-51 | -8.615850e-47 |
| Msa0830460 | Msa1123210 | 0.800445 | 1.436818e-48 | -8.615850e-47 |
| Msa0830460 | Msa1125820 | 0.800542 | 1.372874e-48 | -8.615850e-47 |
| Msa0830460 | Msa1125990 | 0.805231 | 1.474763e-49 | -8.615850e-47 |
| Msa0830460 | Msa1132530 | 0.800684 | 1.284259e-48 | -8.615850e-47 |
| Msa0830460 | Msa1132840 | 0.837108 | 6.313767e-57 | -8.615850e-47 |
| Msa0830460 | Msa1160920 | 0.815209 | 1.039553e-51 | -8.615850e-47 |
| Msa0830460 | Msa1167470 | 0.806061 | 9.874369e-50 | -8.615850e-47 |
| Msa0830460 | Msa1186020 | 0.803698 | 3.078778e-49 | -8.615850e-47 |
| Msa0830460 | Msa1192570 | 0.840079 | 1.078813e-57 | -8.615850e-47 |
| Msa0830460 | Msa1200890 | 0.801043 | 1.084548e-48 | -8.615850e-47 |
| Msa0830460 | Msa1208950 | 0.814731 | 1.326898e-51 | -8.615850e-47 |
| Msa0830460 | Msa1215870 | 0.812601 | 3.905628e-51 | -8.615850e-47 |
| Msa0830460 | Msa1217210 | 0.804175 | 2.450080e-49 | -8.615850e-47 |
| Msa0830460 | Msa1224930 | 0.816460 | 5.468574e-52 | -8.615850e-47 |
| Msa0830460 | Msa1226520 | 0.840873 | 6.688090e-58 | -8.615850e-47 |
| Msa0830460 | Msa1292590 | 0.824947 | 6.122538e-54 | -8.615850e-47 |
| Msa0830460 | Msa1307630 | 0.841498 | 4.582507e-58 | -8.615850e-47 |
| Msa0830460 | Msa1320670 | 0.800099 | 1.689411e-48 | -8.615850e-47 |
| Msa0830460 | Msa1321340 | 0.800346 | 1.504904e-48 | -8.615850e-47 |
| Msa0830460 | Msa1359690 | 0.821984 | 3.018819e-53 | -8.615850e-47 |
| Msa0830460 | Msa1392580 | 0.801165 | 1.023943e-48 | -8.615850e-47 |
| Msa0830460 | Msa1395190 | 0.825682 | 4.102676e-54 | -8.615850e-47 |
| Msa0830460 | Msa1397400 | 0.841188 | 5.528063e-58 | -8.615850e-47 |
| Msa0830460 | Msa1420950 | 0.823960 | 1.045083e-53 | -8.615850e-47 |
| Msa0830460 | Msa1437640 | 0.924545 | 6.108495e-90 | -8.615850e-47 |
| Msa0830460 | Msa1440880 | 0.802768 | 4.796754e-49 | -8.615850e-47 |
| Msa0830460 | Msa1440960 | 0.814191 | 1.747050e-51 | -8.615850e-47 |
| Msa0830460 | Msa1446810 | 0.826856 | 2.155612e-54 | -8.615850e-47 |
| Msa0136650 | Msa0830460 | 0.819391 | 1.190473e-52 | -8.615850e-47 |
| Msa0137880 | Msa0830460 | 0.827080 | 1.906115e-54 | -8.615850e-47 |
| Msa0140280 | Msa0830460 | 0.824128 | 9.544836e-54 | -8.615850e-47 |
| Msa0158860 | Msa0830460 | 0.808605 | 2.853185e-50 | -8.615850e-47 |
| Msa0173730 | Msa0830460 | 0.822538 | 2.245271e-53 | -8.615850e-47 |
| Msa0173810 | Msa0830460 | 0.807700 | 4.447462e-50 | -8.615850e-47 |
| Msa0174450 | Msa0830460 | 0.818023 | 2.433351e-52 | -8.615850e-47 |
| Msa0182190 | Msa0830460 | 0.822175 | 2.725830e-53 | -8.615850e-47 |
| Msa0182240 | Msa0830460 | 0.825840 | 3.763290e-54 | -8.615850e-47 |
| Msa0190570 | Msa0830460 | 0.800775 | 1.230399e-48 | -8.615850e-47 |
| Msa0200050 | Msa0830460 | 0.810240 | 1.271984e-50 | -8.615850e-47 |
| Msa0225860 | Msa0830460 | 0.847055 | 1.473329e-59 | -8.615850e-47 |
| Msa0369790 | Msa0830460 | 0.807172 | 5.754007e-50 | -8.615850e-47 |
| Msa0378720 | Msa0830460 | 0.807146 | 5.828011e-50 | -8.615850e-47 |
| Msa0380620 | Msa0830460 | 0.816000 | 6.926961e-52 | -8.615850e-47 |
| Msa0380670 | Msa0830460 | 0.802102 | 6.578355e-49 | -8.615850e-47 |
| Msa0390970 | Msa0830460 | 0.800765 | 1.235880e-48 | -8.615850e-47 |
| Msa0428370 | Msa0830460 | 0.812274 | 4.604817e-51 | -8.615850e-47 |
| Msa0430260 | Msa0830460 | 0.814664 | 1.373242e-51 | -8.615850e-47 |
| Msa0430300 | Msa0830460 | 0.821492 | 3.923025e-53 | -8.615850e-47 |
| Msa0464000 | Msa0830460 | 0.806454 | 8.161849e-50 | -8.615850e-47 |
| Msa0465530 | Msa0830460 | 0.817497 | 3.198765e-52 | -8.615850e-47 |
| Msa0472950 | Msa0830460 | 0.813019 | 3.163155e-51 | -8.615850e-47 |
| Msa0474730 | Msa0830460 | 0.816953 | 4.238145e-52 | -8.615850e-47 |
| Msa0242590 | Msa0830460 | 0.833937 | 4.003200e-56 | -8.615850e-47 |
| Msa0258060 | Msa0830460 | 0.806408 | 8.346543e-50 | -8.615850e-47 |
| Msa0260510 | Msa0830460 | 0.833295 | 5.788566e-56 | -8.615850e-47 |
| Msa0267110 | Msa0830460 | 0.830143 | 3.466841e-55 | -8.615850e-47 |
| Msa0280790 | Msa0830460 | 0.808722 | 2.693225e-50 | -8.615850e-47 |
| Msa0292400 | Msa0830460 | 0.813413 | 2.592656e-51 | -8.615850e-47 |
| Msa0298470 | Msa0830460 | 0.849458 | 3.193289e-60 | -8.615850e-47 |
| Msa0320660 | Msa0830460 | 0.807868 | 4.095147e-50 | -8.615850e-47 |
| Msa0330380 | Msa0830460 | 0.818554 | 1.845425e-52 | -8.615850e-47 |
| Msa0339500 | Msa0830460 | 0.806343 | 8.612834e-50 | -8.615850e-47 |
| Msa0340500 | Msa0830460 | 0.845078 | 5.081802e-59 | -8.615850e-47 |
| Msa0509550 | Msa0830460 | 0.803490 | 3.399729e-49 | -8.615850e-47 |
| Msa0532070 | Msa0830460 | 0.801273 | 9.731136e-49 | -8.615850e-47 |
| Msa0567170 | Msa0830460 | 0.834831 | 2.387127e-56 | -8.615850e-47 |
| Msa0573850 | Msa0830460 | 0.800045 | 1.732346e-48 | -8.615850e-47 |
| Msa0580370 | Msa0830460 | 0.835036 | 2.120136e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830460 | MtrunA17_Chr5g0396531 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Msa0830460 | MtrunA17_Chr8g0388301 | 67.454 | 593 | 160 | 6 | 18 | 582 | 6 | 593 | 0.0 | 814 |
| Msa0830460 | MtrunA17_Chr8g0346901 | 55.281 | 606 | 231 | 12 | 1 | 581 | 1 | 591 | 0.0 | 663 |
| Msa0830460 | MtrunA17_Chr3g0126781 | 56.261 | 583 | 238 | 9 | 3 | 577 | 1 | 574 | 0.0 | 641 |
| Msa0830460 | MtrunA17_Chr7g0275661 | 55.826 | 575 | 224 | 11 | 23 | 580 | 29 | 590 | 0.0 | 624 |
| Msa0830460 | MtrunA17_Chr8g0366091 | 32.237 | 456 | 250 | 11 | 109 | 556 | 43 | 447 | 1.06e-63 | 220 |
| Msa0830460 | MtrunA17_Chr5g0420771 | 40.317 | 315 | 163 | 7 | 254 | 556 | 152 | 453 | 2.41e-62 | 217 |
| Msa0830460 | MtrunA17_Chr7g0220391 | 38.110 | 328 | 175 | 7 | 261 | 577 | 155 | 465 | 1.90e-59 | 209 |
| Msa0830460 | MtrunA17_Chr7g0255481 | 38.542 | 288 | 145 | 7 | 261 | 537 | 99 | 365 | 3.04e-58 | 201 |
| Msa0830460 | MtrunA17_Chr7g0274921 | 25.325 | 154 | 109 | 3 | 30 | 182 | 2 | 150 | 3.01e-11 | 63.5 |
| Msa0830460 | MtrunA17_Chr7g0274921 | 24.405 | 168 | 121 | 3 | 16 | 182 | 64 | 226 | 4.95e-11 | 63.2 |
| Msa0830460 | MtrunA17_Chr4g0041751 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 3.73e-11 | 63.5 |
| Msa0830460 | MtrunA17_Chr1g0181441 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 4.03e-11 | 63.5 |
| Msa0830460 | MtrunA17_Chr1g0181441 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 6.43e-11 | 62.8 |
| Msa0830460 | MtrunA17_Chr6g0475961 | 25.166 | 151 | 107 | 3 | 33 | 182 | 6 | 151 | 4.36e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830460 | AT2G46500.1 | 55.422 | 581 | 234 | 6 | 1 | 577 | 1 | 560 | 0.0 | 652 |
| Msa0830460 | AT2G46500.2 | 55.422 | 581 | 234 | 6 | 1 | 577 | 1 | 560 | 0.0 | 652 |
| Msa0830460 | AT5G24240.1 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 612 |
| Msa0830460 | AT5G24240.2 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 612 |
| Msa0830460 | AT2G46500.3 | 50.000 | 418 | 184 | 6 | 1 | 414 | 1 | 397 | 4.81e-133 | 395 |
| Msa0830460 | AT2G03890.1 | 38.788 | 330 | 178 | 6 | 238 | 556 | 139 | 455 | 8.96e-64 | 221 |
| Msa0830460 | AT1G13640.1 | 41.522 | 289 | 144 | 5 | 261 | 537 | 154 | 429 | 7.18e-63 | 218 |
| Msa0830460 | AT1G13640.2 | 41.522 | 289 | 144 | 5 | 261 | 537 | 154 | 429 | 7.18e-63 | 218 |
| Msa0830460 | AT1G26270.1 | 40.604 | 298 | 156 | 5 | 248 | 537 | 145 | 429 | 9.90e-63 | 218 |
| Msa0830460 | AT2G40850.1 | 37.647 | 340 | 180 | 9 | 243 | 565 | 94 | 418 | 2.40e-62 | 215 |
| Msa0830460 | AT3G56600.2 | 38.125 | 320 | 167 | 6 | 249 | 555 | 85 | 386 | 2.10e-61 | 212 |
| Msa0830460 | AT3G56600.1 | 38.125 | 320 | 167 | 6 | 249 | 555 | 88 | 389 | 2.38e-61 | 212 |
| Msa0830460 | AT3G56600.3 | 38.125 | 320 | 167 | 6 | 249 | 555 | 88 | 389 | 2.38e-61 | 212 |
| Msa0830460 | AT2G03890.2 | 40.161 | 249 | 127 | 4 | 318 | 556 | 99 | 335 | 1.11e-48 | 177 |
| Msa0830460 | AT1G27570.1 | 30.224 | 268 | 150 | 9 | 328 | 580 | 396 | 641 | 6.65e-25 | 109 |
| Msa0830460 | AT1G27570.2 | 30.224 | 268 | 150 | 9 | 328 | 580 | 387 | 632 | 6.71e-25 | 109 |
| Msa0830460 | AT4G05320.7 | 24.490 | 147 | 106 | 2 | 36 | 182 | 7 | 148 | 1.32e-11 | 63.5 |
| Msa0830460 | AT4G05050.4 | 24.490 | 147 | 106 | 2 | 36 | 182 | 7 | 148 | 1.32e-11 | 63.5 |
| Msa0830460 | AT3G43950.1 | 33.803 | 142 | 77 | 5 | 331 | 468 | 78 | 206 | 1.69e-11 | 64.7 |
| Msa0830460 | AT2G35635.1 | 26.712 | 146 | 102 | 3 | 36 | 181 | 7 | 147 | 3.11e-11 | 62.4 |
| Msa0830460 | AT4G02890.2 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830460 | AT4G02890.2 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830460 | AT4G02890.1 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830460 | AT4G02890.1 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830460 | AT4G05050.2 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830460 | AT4G05050.2 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830460 | AT4G05050.1 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830460 | AT4G05050.1 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830460 | AT4G05050.3 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830460 | AT4G05050.3 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
Find 147 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTGGTAGCAATGATTTC+TGG | 0.116857 | 5_4:-3524540 | None:intergenic |
| GAAGAAAACCAGTCCATATT+TGG | 0.218354 | 5_4:+3524691 | Msa0830460:three_prime_UTR |
| GCACATTTGATTGGCTTTAC+TGG | 0.236333 | 5_4:+3524266 | Msa0830460:CDS |
| ATAGAGCTTCTGAAATATTA+TGG | 0.291106 | 5_4:+3524358 | Msa0830460:CDS |
| TAATAATCCGCGTGGATTGC+CGG | 0.312705 | 5_4:+3522950 | Msa0830460:CDS |
| AGAAGTTGCGGCTTATATAT+TGG | 0.319276 | 5_4:+3523031 | Msa0830460:CDS |
| TCCATATTTGGATGGACTTA+AGG | 0.329114 | 5_4:+3524703 | Msa0830460:three_prime_UTR |
| TACTGGTAATGTTGTTCATT+TGG | 0.334044 | 5_4:+3522317 | Msa0830460:CDS |
| TGGTAAGAGGTGTTCTAATC+AGG | 0.334243 | 5_4:+3524745 | Msa0830460:three_prime_UTR |
| GCCTGGTAGCAATGATTTCT+GGG | 0.343431 | 5_4:-3524539 | None:intergenic |
| ACCTTAAGTCCATCCAAATA+TGG | 0.345436 | 5_4:-3524704 | None:intergenic |
| ATCCTAGGGTTCACGAAAAT+CGG | 0.363297 | 5_4:-3522753 | None:intergenic |
| TCCGCGTGGATTGCCGGTTT+CGG | 0.363471 | 5_4:+3522956 | Msa0830460:CDS |
| GTGGGGATTGTGGCTCTTTG+AGG | 0.363682 | 5_4:+3523165 | Msa0830460:CDS |
| TGGTGTTCCGCCTACGGTTA+TGG | 0.367323 | 5_4:+3523106 | Msa0830460:CDS |
| TTGAAGATTGCACATTTGAT+TGG | 0.370246 | 5_4:+3524257 | Msa0830460:CDS |
| AAGCAAAATCTAGTTTCTAA+TGG | 0.377281 | 5_4:+3522246 | Msa0830460:CDS |
| ACCAAACGCGGTCCAGCCTT+TGG | 0.378332 | 5_4:-3523059 | None:intergenic |
| CCCTCACCATTCACCGAAAC+CGG | 0.379422 | 5_4:-3522969 | None:intergenic |
| GCCATTGGTTCCTCATCAAT+TGG | 0.383037 | 5_4:-3522924 | None:intergenic |
| CGAATTTGTATCGCAGATCA+TGG | 0.384306 | 5_4:+3524582 | Msa0830460:CDS |
| TCCAAAGGCTGGACCGCGTT+TGG | 0.385239 | 5_4:+3523058 | Msa0830460:CDS |
| GGATTGCCGGTTTCGGTGAA+TGG | 0.392525 | 5_4:+3522963 | Msa0830460:CDS |
| CCACAATGTTGTTGAAGAAA+GGG | 0.392633 | 5_4:+3524422 | Msa0830460:CDS |
| ATGATAGATGCAACTTTCAA+TGG | 0.393750 | 5_4:+3522801 | Msa0830460:CDS |
| GATGGTAATTGTGAGGATAT+TGG | 0.395024 | 5_4:+3523230 | Msa0830460:CDS |
| AAACAATATAAGGAGGTGAT+TGG | 0.396649 | 5_4:-3524806 | None:intergenic |
| TCCACAATGTTGTTGAAGAA+AGG | 0.400392 | 5_4:+3524421 | Msa0830460:CDS |
| TTGAAGAGAGGGACAAAGGT+TGG | 0.402804 | 5_4:+3522993 | Msa0830460:CDS |
| CAGAAGTTTATGAGTAATGA+TGG | 0.410311 | 5_4:+3523212 | Msa0830460:CDS |
| TCAACTGTATCGGGAGAGTA+TGG | 0.410892 | 5_4:-3524304 | None:intergenic |
| GAGCCACAATCCCCACCATC+AGG | 0.414679 | 5_4:-3523158 | None:intergenic |
| GTTCCCTCAGAAGATCTAAC+AGG | 0.417109 | 5_4:-3522843 | None:intergenic |
| TAGGAATTGTATTAAAAGAA+AGG | 0.420136 | 5_4:+3522437 | Msa0830460:CDS |
| GCTGGACCGCGTTTGGTGTC+TGG | 0.423380 | 5_4:+3523065 | Msa0830460:CDS |
| AGGAATTGTATTAAAAGAAA+GGG | 0.424400 | 5_4:+3522438 | Msa0830460:CDS |
| GAATCAGGATGAGGTTGTTA+AGG | 0.426840 | 5_4:+3522692 | Msa0830460:CDS |
| ATAGGAACGTTGCACATCTT+AGG | 0.430624 | 5_4:+3522418 | Msa0830460:CDS |
| AAATGGTGACTTACTTTCTC+AGG | 0.430834 | 5_4:-3523404 | None:intergenic |
| AGTGTTCTAGCACTCTCAAC+TGG | 0.433384 | 5_4:-3524391 | None:intergenic |
| CTTAAGGTTGTTGTATAAGA+AGG | 0.434772 | 5_4:+3524719 | Msa0830460:three_prime_UTR |
| CTCTTTGAGGATGGATCATA+AGG | 0.440712 | 5_4:+3523178 | Msa0830460:CDS |
| AAGACAATAACCATGATCAA+TGG | 0.441498 | 5_4:-3523381 | None:intergenic |
| ATACTCTCTGGATGCTGAAA+AGG | 0.444836 | 5_4:+3524333 | Msa0830460:CDS |
| GAATTTGAATAATCAGAATC+AGG | 0.447450 | 5_4:+3522677 | Msa0830460:CDS |
| AACAATATAAGGAGGTGATT+GGG | 0.456381 | 5_4:-3524805 | None:intergenic |
| CTGCTCATTCCCATTGATCA+TGG | 0.456539 | 5_4:+3523371 | Msa0830460:CDS |
| AGCTTCTGAAATATTATGGT+TGG | 0.458037 | 5_4:+3524362 | Msa0830460:CDS |
| CAGATCATGGATTCCCGCCT+TGG | 0.466401 | 5_4:+3524595 | Msa0830460:CDS |
| CCGGTTTCGGTGAATGGTGA+GGG | 0.469852 | 5_4:+3522969 | Msa0830460:CDS |
| GGATTGTGGCTCTTTGAGGA+TGG | 0.473673 | 5_4:+3523169 | Msa0830460:CDS |
| TACCCTGATGGTGGGGATTG+TGG | 0.474991 | 5_4:+3523155 | Msa0830460:CDS |
| GCTTCTGAAATATTATGGTT+GGG | 0.475469 | 5_4:+3524363 | Msa0830460:CDS |
| CGCGGATTATTAACCGCCAT+TGG | 0.475646 | 5_4:-3522939 | None:intergenic |
| TGGTGTTACTGCTCCGTCTA+CGG | 0.482678 | 5_4:-3522148 | None:intergenic |
| AGACAATAACCATGATCAAT+GGG | 0.483074 | 5_4:-3523380 | None:intergenic |
| TATATGTAATCAACTGTATC+GGG | 0.487936 | 5_4:-3524313 | None:intergenic |
| GTTAGATCTTCTGAGGGAAC+AGG | 0.492026 | 5_4:+3522846 | Msa0830460:CDS |
| TATAAGAAGGTGATGGTAAG+AGG | 0.499120 | 5_4:+3524732 | Msa0830460:three_prime_UTR |
| AATTTGAGTTTCAGATTGAT+CGG | 0.502943 | 5_4:+3522394 | Msa0830460:CDS |
| TTGAAGAAAGGGGTTGAGAG+AGG | 0.503562 | 5_4:+3524433 | Msa0830460:CDS |
| CGTTTAATTACCCTGATGGT+GGG | 0.504414 | 5_4:+3523147 | Msa0830460:CDS |
| GCGAAAAGCTTGATGATAAG+AGG | 0.505944 | 5_4:+3522511 | Msa0830460:CDS |
| CTGATATACGTCACCGTAGA+CGG | 0.506918 | 5_4:+3522135 | Msa0830460:CDS |
| GTATATGTAATCAACTGTAT+CGG | 0.506999 | 5_4:-3524314 | None:intergenic |
| AAATCAGATTCCTCCGTGCC+TGG | 0.508144 | 5_4:-3524556 | None:intergenic |
| GGGATTGAAGAGAGGGACAA+AGG | 0.509599 | 5_4:+3522989 | Msa0830460:CDS |
| TGTTCTAATCAGGGACATAT+AGG | 0.511537 | 5_4:+3524755 | Msa0830460:three_prime_UTR |
| TTGTTTAGAAAAGAGTCAAA+TGG | 0.514272 | 5_4:+3523341 | Msa0830460:CDS |
| GTAATAATATGCAATCTCTT+CGG | 0.516077 | 5_4:-3524779 | None:intergenic |
| ATGGTGAGGGATTGAAGAGA+GGG | 0.516819 | 5_4:+3522982 | Msa0830460:CDS |
| TTTCGACAGCTCACCAAGGC+GGG | 0.517562 | 5_4:-3524608 | None:intergenic |
| TAAGAATGGCGAATGCAGAT+AGG | 0.518671 | 5_4:+3523303 | Msa0830460:CDS |
| CAATTGCATCAGTGAAAATG+AGG | 0.519789 | 5_4:+3522193 | Msa0830460:CDS |
| AAAGAGTACGGTGTAACTAC+TGG | 0.519841 | 5_4:+3522300 | Msa0830460:CDS |
| CGTTGGAAGCATCATGTGTA+GGG | 0.519995 | 5_4:+3524471 | Msa0830460:CDS |
| AGTTGATTACATATACTCTC+TGG | 0.522946 | 5_4:+3524321 | Msa0830460:CDS |
| GCGAATGCAGATAGGCATGC+AGG | 0.523425 | 5_4:+3523311 | Msa0830460:CDS |
| GCCGGTTTCGGTGAATGGTG+AGG | 0.524007 | 5_4:+3522968 | Msa0830460:CDS |
| CATGATGCTTCCAACGGCAT+AGG | 0.525963 | 5_4:-3524464 | None:intergenic |
| CACAATGTTGTTGAAGAAAG+GGG | 0.526814 | 5_4:+3524423 | Msa0830460:CDS |
| ATATTGGATCATCCAAAGGC+TGG | 0.527791 | 5_4:+3523047 | Msa0830460:CDS |
| CCCTTTCTTCAACAACATTG+TGG | 0.535835 | 5_4:-3524422 | None:intergenic |
| ATCTTATGCACCTCTTGCAC+AGG | 0.541451 | 5_4:-3523266 | None:intergenic |
| AAGGTTATAGAACAACCCTC+TGG | 0.544988 | 5_4:+3522711 | Msa0830460:CDS |
| TCAGATTCCAACACACGCAT+TGG | 0.545912 | 5_4:-3522168 | None:intergenic |
| TGTATTAAAAGAAAGGGGAA+AGG | 0.545961 | 5_4:+3522444 | Msa0830460:CDS |
| TTGGTGTCTGGTGAAGCGAT+TGG | 0.546477 | 5_4:+3523077 | Msa0830460:CDS |
| AGTTTCAGATTGATCGGCAT+AGG | 0.546957 | 5_4:+3522400 | Msa0830460:CDS |
| GGAATTGTATTAAAAGAAAG+GGG | 0.547344 | 5_4:+3522439 | Msa0830460:CDS |
| AGGAGCTGTGAGAGAAGTTG+CGG | 0.549114 | 5_4:+3523019 | Msa0830460:CDS |
| AAGTCCATCCAAATATGGAC+TGG | 0.551955 | 5_4:-3524699 | None:intergenic |
| CAGTGTGCTTGATATAAGAA+TGG | 0.555819 | 5_4:+3523289 | Msa0830460:CDS |
| ATGATGCTTCCAACGGCATA+GGG | 0.557381 | 5_4:-3524463 | None:intergenic |
| GAAATCATTGCTACCAGGCA+CGG | 0.558584 | 5_4:+3524543 | Msa0830460:CDS |
| TAAACCTGTTAGATCTTCTG+AGG | 0.559006 | 5_4:+3522839 | Msa0830460:CDS |
| TTGAGGATGGATCATAAGGT+GGG | 0.562337 | 5_4:+3523182 | Msa0830460:CDS |
| GGTCTCACTCCCTATGCCGT+TGG | 0.563252 | 5_4:+3524454 | Msa0830460:CDS |
| AGAGGGACAAAGGTTGGAGA+AGG | 0.563732 | 5_4:+3522999 | Msa0830460:CDS |
| GAATAATCAGAATCAGGATG+AGG | 0.566712 | 5_4:+3522683 | Msa0830460:CDS |
| AATGGTGAGGGATTGAAGAG+AGG | 0.566744 | 5_4:+3522981 | Msa0830460:CDS |
| CCGTTGGAAGCATCATGTGT+AGG | 0.567994 | 5_4:+3524470 | Msa0830460:CDS |
| GCGTTTAATTACCCTGATGG+TGG | 0.572883 | 5_4:+3523146 | Msa0830460:CDS |
| TACTTCATGCAAGATTTCAA+AGG | 0.573102 | 5_4:+3522876 | Msa0830460:CDS |
| GCCAATTGATGAGGAACCAA+TGG | 0.574717 | 5_4:+3522923 | Msa0830460:CDS |
| TACGGTGACGTATATCAGAA+TGG | 0.576837 | 5_4:-3522130 | None:intergenic |
| GCCCAGAAATCATTGCTACC+AGG | 0.583800 | 5_4:+3524538 | Msa0830460:CDS |
| GGTAAGAGGTGTTCTAATCA+GGG | 0.586502 | 5_4:+3524746 | Msa0830460:three_prime_UTR |
| AGATCTTCTGAGGGAACAGG+TGG | 0.592366 | 5_4:+3522849 | Msa0830460:CDS |
| GTTTAATTACCCTGATGGTG+GGG | 0.592966 | 5_4:+3523148 | Msa0830460:CDS |
| CATGCAAGATTTCAAAGGTG+TGG | 0.594948 | 5_4:+3522881 | Msa0830460:CDS |
| GAAGCGTTTAATTACCCTGA+TGG | 0.595781 | 5_4:+3523143 | Msa0830460:CDS |
| AAAACCAGTCCATATTTGGA+TGG | 0.597398 | 5_4:+3524695 | Msa0830460:three_prime_UTR |
| TTATATATTGGATCATCCAA+AGG | 0.598620 | 5_4:+3523043 | Msa0830460:CDS |
| TTTGAGGATGGATCATAAGG+TGG | 0.602051 | 5_4:+3523181 | Msa0830460:CDS |
| GTTGTTGTATAAGAAGGTGA+TGG | 0.602695 | 5_4:+3524725 | Msa0830460:three_prime_UTR |
| CGAATGCAGATAGGCATGCA+GGG | 0.605455 | 5_4:+3523312 | Msa0830460:CDS |
| GAGTATGGCTGACGTGCTTG+AGG | 0.611194 | 5_4:-3524289 | None:intergenic |
| TCTATCATATCCCATAGGAA+AGG | 0.618347 | 5_4:-3522786 | None:intergenic |
| AAACCTGTTAGATCTTCTGA+GGG | 0.622266 | 5_4:+3522840 | Msa0830460:CDS |
| CCTACACATGATGCTTCCAA+CGG | 0.625450 | 5_4:-3524470 | None:intergenic |
| GAACAAAGAATCAGTGATCG+AGG | 0.625787 | 5_4:+3524501 | Msa0830460:CDS |
| AGTAACACCAATGCGTGTGT+TGG | 0.628419 | 5_4:+3522161 | Msa0830460:CDS |
| TCAACAACATTGTGGAAATG+CGG | 0.628972 | 5_4:-3524414 | None:intergenic |
| AATGCGGTGATGAAAGAGTA+CGG | 0.631647 | 5_4:+3522288 | Msa0830460:CDS |
| AGCCACAATCCCCACCATCA+GGG | 0.637152 | 5_4:-3523157 | None:intergenic |
| TTGCATCTATCATATCCCAT+AGG | 0.637801 | 5_4:-3522791 | None:intergenic |
| TGAGGATGGATCATAAGGTG+GGG | 0.651663 | 5_4:+3523183 | Msa0830460:CDS |
| TCTTGCACAGGAAAAGCACC+AGG | 0.657475 | 5_4:-3523254 | None:intergenic |
| AATTGATGAGGAACCAATGG+CGG | 0.662251 | 5_4:+3522926 | Msa0830460:CDS |
| TGTGAGGACAATGTGTGGGA+AGG | 0.662882 | 5_4:+3522371 | Msa0830460:CDS |
| ATTGTTGTGAGGACAATGTG+TGG | 0.666886 | 5_4:+3522366 | Msa0830460:CDS |
| TTGTTGTGAGGACAATGTGT+GGG | 0.668421 | 5_4:+3522367 | Msa0830460:CDS |
| CACCGCACCATAACCGTAGG+CGG | 0.670788 | 5_4:-3523113 | None:intergenic |
| AATTGTGAGGATATTGGACC+TGG | 0.674707 | 5_4:+3523236 | Msa0830460:CDS |
| TTCCGCCTACGGTTATGGTG+CGG | 0.680938 | 5_4:+3523111 | Msa0830460:CDS |
| ATCATTGCTACCAGGCACGG+AGG | 0.695943 | 5_4:+3524546 | Msa0830460:CDS |
| ATTTCGACAGCTCACCAAGG+CGG | 0.700271 | 5_4:-3524609 | None:intergenic |
| TGGATTCGCTTGAACAACGA+CGG | 0.702171 | 5_4:-3522110 | None:intergenic |
| AAACACCGCACCATAACCGT+AGG | 0.703540 | 5_4:-3523116 | None:intergenic |
| GATCTTCTGAGGGAACAGGT+GGG | 0.712393 | 5_4:+3522850 | Msa0830460:CDS |
| ATGGCGGTTAATAATCCGCG+TGG | 0.713372 | 5_4:+3522942 | Msa0830460:CDS |
| GAGTAATGATGGTAATTGTG+AGG | 0.714535 | 5_4:+3523223 | Msa0830460:CDS |
| TCTATTTCGACAGCTCACCA+AGG | 0.716631 | 5_4:-3524612 | None:intergenic |
| ACCGAAACCGGCAATCCACG+CGG | 0.729544 | 5_4:-3522957 | None:intergenic |
| AGAATTATCTCGTAACAATG+CGG | 0.734694 | 5_4:+3522272 | Msa0830460:CDS |
| GCTTCACCAGACACCAAACG+CGG | 0.759039 | 5_4:-3523071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATCTTATTGTTAAAAAAT+CGG | + | chr5_4:3522572-3522591 | Msa0830460:CDS | 15.0% |
| !! | AATATTGAATATTGAATCTA+CGG | + | chr5_4:3523738-3523757 | Msa0830460:intron | 15.0% |
| !!! | TTTTCCGATTCTTTTAAAAT+CGG | - | chr5_4:3522072-3522091 | None:intergenic | 20.0% |
| !! | TAGGAATTGTATTAAAAGAA+AGG | + | chr5_4:3522437-3522456 | Msa0830460:CDS | 20.0% |
| !! | AGGAATTGTATTAAAAGAAA+GGG | + | chr5_4:3522438-3522457 | Msa0830460:CDS | 20.0% |
| !! | AATAAAACAAGAATGTGAAA+TGG | - | chr5_4:3523424-3523443 | None:intergenic | 20.0% |
| !! | AAAACATTATAATACTGCAT+AGG | - | chr5_4:3523449-3523468 | None:intergenic | 20.0% |
| !! | TATACAAAGTTAGCATAAAA+AGG | - | chr5_4:3523680-3523699 | None:intergenic | 20.0% |
| !! | CCAATAAAAATATATCTCTT+AGG | - | chr5_4:3523783-3523802 | None:intergenic | 20.0% |
| !!! | CCTAAGAGATATATTTTTAT+TGG | + | chr5_4:3523780-3523799 | Msa0830460:intron | 20.0% |
| !! | AAGCAAAATCTAGTTTCTAA+TGG | + | chr5_4:3522246-3522265 | Msa0830460:CDS | 25.0% |
| !! | ATATGATTTTCATTGTTGTG+AGG | + | chr5_4:3522355-3522374 | Msa0830460:CDS | 25.0% |
| !! | AATTTGAGTTTCAGATTGAT+CGG | + | chr5_4:3522394-3522413 | Msa0830460:CDS | 25.0% |
| ! | GGAATTGTATTAAAAGAAAG+GGG | + | chr5_4:3522439-3522458 | Msa0830460:CDS | 25.0% |
| !!! | TGCTACTTTTGTTCATAATA+AGG | + | chr5_4:3522605-3522624 | Msa0830460:CDS | 25.0% |
| ! | GAATTTGAATAATCAGAATC+AGG | + | chr5_4:3522677-3522696 | Msa0830460:CDS | 25.0% |
| ! | AACAAAAAATCAAAACCAGA+GGG | - | chr5_4:3522729-3522748 | None:intergenic | 25.0% |
| ! | TAACAAAAAATCAAAACCAG+AGG | - | chr5_4:3522730-3522749 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAATTGATCCTA+GGG | - | chr5_4:3522770-3522789 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAAATTGATCCT+AGG | - | chr5_4:3522771-3522790 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTTCCTTTCCTA+TGG | + | chr5_4:3522775-3522794 | Msa0830460:CDS | 25.0% |
| !!! | CAATTTTTTTCCTTTCCTAT+GGG | + | chr5_4:3522776-3522795 | Msa0830460:CDS | 25.0% |
| ! | ACTTTCAATGGTTTGAAAAA+AGG | + | chr5_4:3522813-3522832 | Msa0830460:CDS | 25.0% |
| ! | TTATATATTGGATCATCCAA+AGG | + | chr5_4:3523043-3523062 | Msa0830460:CDS | 25.0% |
| ! | TTGTTTAGAAAAGAGTCAAA+TGG | + | chr5_4:3523341-3523360 | Msa0830460:CDS | 25.0% |
| !! | AATGTTTTCTATGTTCTGTT+TGG | + | chr5_4:3523461-3523480 | Msa0830460:intron | 25.0% |
| !! | TCCATAGTATAGATCTATTT+TGG | + | chr5_4:3523568-3523587 | Msa0830460:intron | 25.0% |
| ! | TCCAAAATAGATCTATACTA+TGG | - | chr5_4:3523572-3523591 | None:intergenic | 25.0% |
| !! | TAACCATGTTCGTTATATTT+TGG | + | chr5_4:3523847-3523866 | Msa0830460:intron | 25.0% |
| ! | AAAAATCTTGCAATAACTAC+TGG | - | chr5_4:3523979-3523998 | None:intergenic | 25.0% |
| ! | AACAAGTTATAAAAGTAGTC+TGG | - | chr5_4:3524043-3524062 | None:intergenic | 25.0% |
| !! | TTCTTATACATCATTTTGCA+AGG | + | chr5_4:3524074-3524093 | Msa0830460:intron | 25.0% |
| ! | TATATGTAATCAACTGTATC+GGG | - | chr5_4:3524316-3524335 | None:intergenic | 25.0% |
| ! | GTATATGTAATCAACTGTAT+CGG | - | chr5_4:3524317-3524336 | None:intergenic | 25.0% |
| !!! | ATAGAGCTTCTGAAATATTA+TGG | + | chr5_4:3524358-3524377 | Msa0830460:CDS | 25.0% |
| !! | TTTTTCTTTGTCTGATTCAT+AGG | + | chr5_4:3524640-3524659 | Msa0830460:three_prime_UTR | 25.0% |
| ! | GTAATAATATGCAATCTCTT+CGG | - | chr5_4:3524782-3524801 | None:intergenic | 25.0% |
| !! | GAGACCGATTTTAAAAGAAT+CGG | + | chr5_4:3522065-3522084 | Msa0830460:CDS | 30.0% |
| AAACACGCAAAAATGTTTCA+TGG | + | chr5_4:3522220-3522239 | Msa0830460:CDS | 30.0% | |
| AGAATTATCTCGTAACAATG+CGG | + | chr5_4:3522272-3522291 | Msa0830460:CDS | 30.0% | |
| ! | TACTGGTAATGTTGTTCATT+TGG | + | chr5_4:3522317-3522336 | Msa0830460:CDS | 30.0% |
| TGTATTAAAAGAAAGGGGAA+AGG | + | chr5_4:3522444-3522463 | Msa0830460:CDS | 30.0% | |
| ATGATAGATGCAACTTTCAA+TGG | + | chr5_4:3522801-3522820 | Msa0830460:CDS | 30.0% | |
| TACTTCATGCAAGATTTCAA+AGG | + | chr5_4:3522876-3522895 | Msa0830460:CDS | 30.0% | |
| !! | TGTTTTTAAGCCAATTGATG+AGG | + | chr5_4:3522914-3522933 | Msa0830460:CDS | 30.0% |
| CAGAAGTTTATGAGTAATGA+TGG | + | chr5_4:3523212-3523231 | Msa0830460:CDS | 30.0% | |
| AGACAATAACCATGATCAAT+GGG | - | chr5_4:3523383-3523402 | None:intergenic | 30.0% | |
| AAGACAATAACCATGATCAA+TGG | - | chr5_4:3523384-3523403 | None:intergenic | 30.0% | |
| ! | TCTATACTATGGATTGACAT+CGG | - | chr5_4:3523561-3523580 | None:intergenic | 30.0% |
| GAGATTCATCGTAATAAATC+GGG | - | chr5_4:3523614-3523633 | None:intergenic | 30.0% | |
| CGAGATTCATCGTAATAAAT+CGG | - | chr5_4:3523615-3523634 | None:intergenic | 30.0% | |
| TTACTTAAACTTAGTGCAGT+CGG | + | chr5_4:3523653-3523672 | Msa0830460:intron | 30.0% | |
| CATCCAAAATATAACGAACA+TGG | - | chr5_4:3523853-3523872 | None:intergenic | 30.0% | |
| GATGTCAGTTTAGACTTATA+TGG | + | chr5_4:3523929-3523948 | Msa0830460:intron | 30.0% | |
| GAACTTAATACGTATGTCAT+AGG | + | chr5_4:3524164-3524183 | Msa0830460:intron | 30.0% | |
| TTGAAGATTGCACATTTGAT+TGG | + | chr5_4:3524257-3524276 | Msa0830460:CDS | 30.0% | |
| AGTTGATTACATATACTCTC+TGG | + | chr5_4:3524321-3524340 | Msa0830460:CDS | 30.0% | |
| !! | AGCTTCTGAAATATTATGGT+TGG | + | chr5_4:3524362-3524381 | Msa0830460:CDS | 30.0% |
| !! | GCTTCTGAAATATTATGGTT+GGG | + | chr5_4:3524363-3524382 | Msa0830460:CDS | 30.0% |
| CTTAAGGTTGTTGTATAAGA+AGG | + | chr5_4:3524719-3524738 | Msa0830460:three_prime_UTR | 30.0% | |
| AACAATATAAGGAGGTGATT+GGG | - | chr5_4:3524808-3524827 | None:intergenic | 30.0% | |
| AAACAATATAAGGAGGTGAT+TGG | - | chr5_4:3524809-3524828 | None:intergenic | 30.0% | |
| !! | CACCTCCTTATATTGTTTTT+CGG | + | chr5_4:3524811-3524830 | Msa0830460:three_prime_UTR | 30.0% |
| !! | ACCTCCTTATATTGTTTTTC+GGG | + | chr5_4:3524812-3524831 | Msa0830460:three_prime_UTR | 30.0% |
| CAATCCCGAAAAACAATATA+AGG | - | chr5_4:3524819-3524838 | None:intergenic | 30.0% | |
| CAATTGCATCAGTGAAAATG+AGG | + | chr5_4:3522193-3522212 | Msa0830460:CDS | 35.0% | |
| !!! | AGGTTTTGTTGATCTTGTTG+AGG | + | chr5_4:3522464-3522483 | Msa0830460:CDS | 35.0% |
| !!! | GAACAAGAGTTTTTTTGCAG+CGG | + | chr5_4:3522489-3522508 | Msa0830460:CDS | 35.0% |
| GAATAATCAGAATCAGGATG+AGG | + | chr5_4:3522683-3522702 | Msa0830460:CDS | 35.0% | |
| TCTATCATATCCCATAGGAA+AGG | - | chr5_4:3522789-3522808 | None:intergenic | 35.0% | |
| TTGCATCTATCATATCCCAT+AGG | - | chr5_4:3522794-3522813 | None:intergenic | 35.0% | |
| TAAACCTGTTAGATCTTCTG+AGG | + | chr5_4:3522839-3522858 | Msa0830460:CDS | 35.0% | |
| AAACCTGTTAGATCTTCTGA+GGG | + | chr5_4:3522840-3522859 | Msa0830460:CDS | 35.0% | |
| AGAAGTTGCGGCTTATATAT+TGG | + | chr5_4:3523031-3523050 | Msa0830460:CDS | 35.0% | |
| GAGTAATGATGGTAATTGTG+AGG | + | chr5_4:3523223-3523242 | Msa0830460:CDS | 35.0% | |
| GATGGTAATTGTGAGGATAT+TGG | + | chr5_4:3523230-3523249 | Msa0830460:CDS | 35.0% | |
| CAGTGTGCTTGATATAAGAA+TGG | + | chr5_4:3523289-3523308 | Msa0830460:CDS | 35.0% | |
| AAATGGTGACTTACTTTCTC+AGG | - | chr5_4:3523407-3523426 | None:intergenic | 35.0% | |
| AATGACAAAAGATAAGCGAC+TGG | - | chr5_4:3523704-3523723 | None:intergenic | 35.0% | |
| TCAACAACATTGTGGAAATG+CGG | - | chr5_4:3524417-3524436 | None:intergenic | 35.0% | |
| TCCACAATGTTGTTGAAGAA+AGG | + | chr5_4:3524421-3524440 | Msa0830460:CDS | 35.0% | |
| CCACAATGTTGTTGAAGAAA+GGG | + | chr5_4:3524422-3524441 | Msa0830460:CDS | 35.0% | |
| CACAATGTTGTTGAAGAAAG+GGG | + | chr5_4:3524423-3524442 | Msa0830460:CDS | 35.0% | |
| GAAGAAAACCAGTCCATATT+TGG | + | chr5_4:3524691-3524710 | Msa0830460:three_prime_UTR | 35.0% | |
| AAAACCAGTCCATATTTGGA+TGG | + | chr5_4:3524695-3524714 | Msa0830460:three_prime_UTR | 35.0% | |
| ! | TCCATATTTGGATGGACTTA+AGG | + | chr5_4:3524703-3524722 | Msa0830460:three_prime_UTR | 35.0% |
| ACCTTAAGTCCATCCAAATA+TGG | - | chr5_4:3524707-3524726 | None:intergenic | 35.0% | |
| GTTGTTGTATAAGAAGGTGA+TGG | + | chr5_4:3524725-3524744 | Msa0830460:three_prime_UTR | 35.0% | |
| ! | TATAAGAAGGTGATGGTAAG+AGG | + | chr5_4:3524732-3524751 | Msa0830460:three_prime_UTR | 35.0% |
| TGTTCTAATCAGGGACATAT+AGG | + | chr5_4:3524755-3524774 | Msa0830460:three_prime_UTR | 35.0% | |
| TCCCGAAAAACAATATAAGG+AGG | - | chr5_4:3524816-3524835 | None:intergenic | 35.0% | |
| TACGGTGACGTATATCAGAA+TGG | - | chr5_4:3522133-3522152 | None:intergenic | 40.0% | |
| AATGCGGTGATGAAAGAGTA+CGG | + | chr5_4:3522288-3522307 | Msa0830460:CDS | 40.0% | |
| ! | AAAGAGTACGGTGTAACTAC+TGG | + | chr5_4:3522300-3522319 | Msa0830460:CDS | 40.0% |
| ATTGTTGTGAGGACAATGTG+TGG | + | chr5_4:3522366-3522385 | Msa0830460:CDS | 40.0% | |
| TTGTTGTGAGGACAATGTGT+GGG | + | chr5_4:3522367-3522386 | Msa0830460:CDS | 40.0% | |
| AGTTTCAGATTGATCGGCAT+AGG | + | chr5_4:3522400-3522419 | Msa0830460:CDS | 40.0% | |
| ATAGGAACGTTGCACATCTT+AGG | + | chr5_4:3522418-3522437 | Msa0830460:CDS | 40.0% | |
| ! | GCGAAAAGCTTGATGATAAG+AGG | + | chr5_4:3522511-3522530 | Msa0830460:CDS | 40.0% |
| GAATCAGGATGAGGTTGTTA+AGG | + | chr5_4:3522692-3522711 | Msa0830460:CDS | 40.0% | |
| AAGGTTATAGAACAACCCTC+TGG | + | chr5_4:3522711-3522730 | Msa0830460:CDS | 40.0% | |
| ATCCTAGGGTTCACGAAAAT+CGG | - | chr5_4:3522756-3522775 | None:intergenic | 40.0% | |
| CATGCAAGATTTCAAAGGTG+TGG | + | chr5_4:3522881-3522900 | Msa0830460:CDS | 40.0% | |
| AATTGATGAGGAACCAATGG+CGG | + | chr5_4:3522926-3522945 | Msa0830460:CDS | 40.0% | |
| ATATTGGATCATCCAAAGGC+TGG | + | chr5_4:3523047-3523066 | Msa0830460:CDS | 40.0% | |
| ! | GAAGCGTTTAATTACCCTGA+TGG | + | chr5_4:3523143-3523162 | Msa0830460:CDS | 40.0% |
| CGTTTAATTACCCTGATGGT+GGG | + | chr5_4:3523147-3523166 | Msa0830460:CDS | 40.0% | |
| ! | GTTTAATTACCCTGATGGTG+GGG | + | chr5_4:3523148-3523167 | Msa0830460:CDS | 40.0% |
| ! | CTCTTTGAGGATGGATCATA+AGG | + | chr5_4:3523178-3523197 | Msa0830460:CDS | 40.0% |
| TTTGAGGATGGATCATAAGG+TGG | + | chr5_4:3523181-3523200 | Msa0830460:CDS | 40.0% | |
| TTGAGGATGGATCATAAGGT+GGG | + | chr5_4:3523182-3523201 | Msa0830460:CDS | 40.0% | |
| AATTGTGAGGATATTGGACC+TGG | + | chr5_4:3523236-3523255 | Msa0830460:CDS | 40.0% | |
| TAAGAATGGCGAATGCAGAT+AGG | + | chr5_4:3523303-3523322 | Msa0830460:CDS | 40.0% | |
| !! | GCACATTTGATTGGCTTTAC+TGG | + | chr5_4:3524266-3524285 | Msa0830460:CDS | 40.0% |
| ATACTCTCTGGATGCTGAAA+AGG | + | chr5_4:3524333-3524352 | Msa0830460:CDS | 40.0% | |
| CCCTTTCTTCAACAACATTG+TGG | - | chr5_4:3524425-3524444 | None:intergenic | 40.0% | |
| GAACAAAGAATCAGTGATCG+AGG | + | chr5_4:3524501-3524520 | Msa0830460:CDS | 40.0% | |
| CGAATTTGTATCGCAGATCA+TGG | + | chr5_4:3524582-3524601 | Msa0830460:CDS | 40.0% | |
| AAGTCCATCCAAATATGGAC+TGG | - | chr5_4:3524702-3524721 | None:intergenic | 40.0% | |
| !! | TGGTAAGAGGTGTTCTAATC+AGG | + | chr5_4:3524745-3524764 | Msa0830460:three_prime_UTR | 40.0% |
| !! | GGTAAGAGGTGTTCTAATCA+GGG | + | chr5_4:3524746-3524765 | Msa0830460:three_prime_UTR | 40.0% |
| TGGATTCGCTTGAACAACGA+CGG | - | chr5_4:3522113-3522132 | None:intergenic | 45.0% | |
| CTGATATACGTCACCGTAGA+CGG | + | chr5_4:3522135-3522154 | Msa0830460:CDS | 45.0% | |
| AGTAACACCAATGCGTGTGT+TGG | + | chr5_4:3522161-3522180 | Msa0830460:CDS | 45.0% | |
| TCAGATTCCAACACACGCAT+TGG | - | chr5_4:3522171-3522190 | None:intergenic | 45.0% | |
| !! | AACCGATTTTCGTGAACCCT+AGG | + | chr5_4:3522751-3522770 | Msa0830460:CDS | 45.0% |
| GTTCCCTCAGAAGATCTAAC+AGG | - | chr5_4:3522846-3522865 | None:intergenic | 45.0% | |
| ! | GTTAGATCTTCTGAGGGAAC+AGG | + | chr5_4:3522846-3522865 | Msa0830460:CDS | 45.0% |
| GCCAATTGATGAGGAACCAA+TGG | + | chr5_4:3522923-3522942 | Msa0830460:CDS | 45.0% | |
| !! | GCCATTGGTTCCTCATCAAT+TGG | - | chr5_4:3522927-3522946 | None:intergenic | 45.0% |
| ! | TAATAATCCGCGTGGATTGC+CGG | + | chr5_4:3522950-3522969 | Msa0830460:CDS | 45.0% |
| AATGGTGAGGGATTGAAGAG+AGG | + | chr5_4:3522981-3523000 | Msa0830460:CDS | 45.0% | |
| ATGGTGAGGGATTGAAGAGA+GGG | + | chr5_4:3522982-3523001 | Msa0830460:CDS | 45.0% | |
| TTGAAGAGAGGGACAAAGGT+TGG | + | chr5_4:3522993-3523012 | Msa0830460:CDS | 45.0% | |
| GCGTTTAATTACCCTGATGG+TGG | + | chr5_4:3523146-3523165 | Msa0830460:CDS | 45.0% | |
| TGAGGATGGATCATAAGGTG+GGG | + | chr5_4:3523183-3523202 | Msa0830460:CDS | 45.0% | |
| ATCTTATGCACCTCTTGCAC+AGG | - | chr5_4:3523269-3523288 | None:intergenic | 45.0% | |
| CTGCTCATTCCCATTGATCA+TGG | + | chr5_4:3523371-3523390 | Msa0830460:CDS | 45.0% | |
| ACTGACATCTGCATCTCAGT+TGG | - | chr5_4:3523918-3523937 | None:intergenic | 45.0% | |
| CTTCAGCAACTTCGTATGCA+TGG | - | chr5_4:3524124-3524143 | None:intergenic | 45.0% | |
| CATGCATACGAAGTTGCTGA+AGG | + | chr5_4:3524122-3524141 | Msa0830460:intron | 45.0% | |
| TCAACTGTATCGGGAGAGTA+TGG | - | chr5_4:3524307-3524326 | None:intergenic | 45.0% | |
| AGTGTTCTAGCACTCTCAAC+TGG | - | chr5_4:3524394-3524413 | None:intergenic | 45.0% | |
| TTGAAGAAAGGGGTTGAGAG+AGG | + | chr5_4:3524433-3524452 | Msa0830460:CDS | 45.0% | |
| ATGATGCTTCCAACGGCATA+GGG | - | chr5_4:3524466-3524485 | None:intergenic | 45.0% | |
| CCTACACATGATGCTTCCAA+CGG | - | chr5_4:3524473-3524492 | None:intergenic | 45.0% | |
| !! | CGTTGGAAGCATCATGTGTA+GGG | + | chr5_4:3524471-3524490 | Msa0830460:CDS | 45.0% |
| GCCTGGTAGCAATGATTTCT+GGG | - | chr5_4:3524542-3524561 | None:intergenic | 45.0% | |
| TGCCTGGTAGCAATGATTTC+TGG | - | chr5_4:3524543-3524562 | None:intergenic | 45.0% | |
| GAAATCATTGCTACCAGGCA+CGG | + | chr5_4:3524543-3524562 | Msa0830460:CDS | 45.0% | |
| TCTATTTCGACAGCTCACCA+AGG | - | chr5_4:3524615-3524634 | None:intergenic | 45.0% | |
| !! | TGGTGTTACTGCTCCGTCTA+CGG | - | chr5_4:3522151-3522170 | None:intergenic | 50.0% |
| TGTGAGGACAATGTGTGGGA+AGG | + | chr5_4:3522371-3522390 | Msa0830460:CDS | 50.0% | |
| ! | AGATCTTCTGAGGGAACAGG+TGG | + | chr5_4:3522849-3522868 | Msa0830460:CDS | 50.0% |
| ! | GATCTTCTGAGGGAACAGGT+GGG | + | chr5_4:3522850-3522869 | Msa0830460:CDS | 50.0% |
| ! | CGCGGATTATTAACCGCCAT+TGG | - | chr5_4:3522942-3522961 | None:intergenic | 50.0% |
| ATGGCGGTTAATAATCCGCG+TGG | + | chr5_4:3522942-3522961 | Msa0830460:CDS | 50.0% | |
| GGGATTGAAGAGAGGGACAA+AGG | + | chr5_4:3522989-3523008 | Msa0830460:CDS | 50.0% | |
| AGAGGGACAAAGGTTGGAGA+AGG | + | chr5_4:3522999-3523018 | Msa0830460:CDS | 50.0% | |
| AGGAGCTGTGAGAGAAGTTG+CGG | + | chr5_4:3523019-3523038 | Msa0830460:CDS | 50.0% | |
| ! | TTGGTGTCTGGTGAAGCGAT+TGG | + | chr5_4:3523077-3523096 | Msa0830460:CDS | 50.0% |
| !!! | GGTGAAGCGATTGGTTTTGC+TGG | + | chr5_4:3523086-3523105 | Msa0830460:CDS | 50.0% |
| ! | TTTTGCTGGTGTTCCGCCTA+CGG | + | chr5_4:3523100-3523119 | Msa0830460:CDS | 50.0% |
| AAACACCGCACCATAACCGT+AGG | - | chr5_4:3523119-3523138 | None:intergenic | 50.0% | |
| ! | GGATTGTGGCTCTTTGAGGA+TGG | + | chr5_4:3523169-3523188 | Msa0830460:CDS | 50.0% |
| !! | TCTTGCACAGGAAAAGCACC+AGG | - | chr5_4:3523257-3523276 | None:intergenic | 50.0% |
| ! | TGGTGCTTTTCCTGTGCAAG+AGG | + | chr5_4:3523256-3523275 | Msa0830460:CDS | 50.0% |
| CGAATGCAGATAGGCATGCA+GGG | + | chr5_4:3523312-3523331 | Msa0830460:CDS | 50.0% | |
| GCATACGAAGTTGCTGAAGG+TGG | + | chr5_4:3524125-3524144 | Msa0830460:intron | 50.0% | |
| CATGATGCTTCCAACGGCAT+AGG | - | chr5_4:3524467-3524486 | None:intergenic | 50.0% | |
| !! | CCGTTGGAAGCATCATGTGT+AGG | + | chr5_4:3524470-3524489 | Msa0830460:CDS | 50.0% |
| GCCCAGAAATCATTGCTACC+AGG | + | chr5_4:3524538-3524557 | Msa0830460:CDS | 50.0% | |
| AAATCAGATTCCTCCGTGCC+TGG | - | chr5_4:3524559-3524578 | None:intergenic | 50.0% | |
| ATTTCGACAGCTCACCAAGG+CGG | - | chr5_4:3524612-3524631 | None:intergenic | 50.0% | |
| !! | GGATTGCCGGTTTCGGTGAA+TGG | + | chr5_4:3522963-3522982 | Msa0830460:CDS | 55.0% |
| CCCTCACCATTCACCGAAAC+CGG | - | chr5_4:3522972-3522991 | None:intergenic | 55.0% | |
| CCGGTTTCGGTGAATGGTGA+GGG | + | chr5_4:3522969-3522988 | Msa0830460:CDS | 55.0% | |
| GCTTCACCAGACACCAAACG+CGG | - | chr5_4:3523074-3523093 | None:intergenic | 55.0% | |
| TGGTGTTCCGCCTACGGTTA+TGG | + | chr5_4:3523106-3523125 | Msa0830460:CDS | 55.0% | |
| TTCCGCCTACGGTTATGGTG+CGG | + | chr5_4:3523111-3523130 | Msa0830460:CDS | 55.0% | |
| !! | TACCCTGATGGTGGGGATTG+TGG | + | chr5_4:3523155-3523174 | Msa0830460:CDS | 55.0% |
| AGCCACAATCCCCACCATCA+GGG | - | chr5_4:3523160-3523179 | None:intergenic | 55.0% | |
| GTGGGGATTGTGGCTCTTTG+AGG | + | chr5_4:3523165-3523184 | Msa0830460:CDS | 55.0% | |
| GCGAATGCAGATAGGCATGC+AGG | + | chr5_4:3523311-3523330 | Msa0830460:CDS | 55.0% | |
| GAGTATGGCTGACGTGCTTG+AGG | - | chr5_4:3524292-3524311 | None:intergenic | 55.0% | |
| ATCATTGCTACCAGGCACGG+AGG | + | chr5_4:3524546-3524565 | Msa0830460:CDS | 55.0% | |
| CAGATCATGGATTCCCGCCT+TGG | + | chr5_4:3524595-3524614 | Msa0830460:CDS | 55.0% | |
| TTTCGACAGCTCACCAAGGC+GGG | - | chr5_4:3524611-3524630 | None:intergenic | 55.0% | |
| !! | TCCGCGTGGATTGCCGGTTT+CGG | + | chr5_4:3522956-3522975 | Msa0830460:CDS | 60.0% |
| ACCGAAACCGGCAATCCACG+CGG | - | chr5_4:3522960-3522979 | None:intergenic | 60.0% | |
| ! | GCCGGTTTCGGTGAATGGTG+AGG | + | chr5_4:3522968-3522987 | Msa0830460:CDS | 60.0% |
| TCCAAAGGCTGGACCGCGTT+TGG | + | chr5_4:3523058-3523077 | Msa0830460:CDS | 60.0% | |
| ACCAAACGCGGTCCAGCCTT+TGG | - | chr5_4:3523062-3523081 | None:intergenic | 60.0% | |
| CACCGCACCATAACCGTAGG+CGG | - | chr5_4:3523116-3523135 | None:intergenic | 60.0% | |
| GAGCCACAATCCCCACCATC+AGG | - | chr5_4:3523161-3523180 | None:intergenic | 60.0% | |
| GGTCTCACTCCCTATGCCGT+TGG | + | chr5_4:3524454-3524473 | Msa0830460:CDS | 60.0% | |
| !! | GCTGGACCGCGTTTGGTGTC+TGG | + | chr5_4:3523065-3523084 | Msa0830460:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3522042 | 3524859 | 3522042 | ID=Msa0830460;Name=Msa0830460 |
| chr5_4 | mRNA | 3522042 | 3524859 | 3522042 | ID=Msa0830460-mRNA-1;Parent=Msa0830460;Name=Msa0830460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.5|1|1|1|2|226|582 |
| chr5_4 | exon | 3522042 | 3523412 | 3522042 | ID=Msa0830460-mRNA-1:exon:1361;Parent=Msa0830460-mRNA-1 |
| chr5_4 | exon | 3524256 | 3524859 | 3524256 | ID=Msa0830460-mRNA-1:exon:1362;Parent=Msa0830460-mRNA-1 |
| chr5_4 | CDS | 3522042 | 3523412 | 3522042 | ID=Msa0830460-mRNA-1:cds;Parent=Msa0830460-mRNA-1 |
| chr5_4 | CDS | 3524256 | 3524633 | 3524256 | ID=Msa0830460-mRNA-1:cds;Parent=Msa0830460-mRNA-1 |
| chr5_4 | three_prime_UTR | 3524634 | 3524859 | 3524634 | ID=Msa0830460-mRNA-1:three_prime_utr;Parent=Msa0830460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
