Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437640 | XP_003610975.2 | 94.902 | 255 | 13 | 0 | 22 | 276 | 311 | 565 | 4.47e-176 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437640 | sp|Q9SGW8|P4KG2_ARATH | 68.359 | 256 | 78 | 2 | 22 | 276 | 280 | 533 | 1.15e-126 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437640 | G7K9A8 | 94.902 | 255 | 13 | 0 | 22 | 276 | 311 | 565 | 2.13e-176 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa1437640 | 0.815825 | 7.581288e-52 | -8.615850e-47 |
| Msa0049760 | Msa1437640 | 0.803923 | 2.764455e-49 | -8.615850e-47 |
| Msa0052480 | Msa1437640 | 0.816857 | 4.454491e-52 | -8.615850e-47 |
| Msa0054690 | Msa1437640 | 0.826082 | 3.297841e-54 | -8.615850e-47 |
| Msa0090400 | Msa1437640 | 0.801987 | 6.947460e-49 | -8.615850e-47 |
| Msa0094780 | Msa1437640 | 0.826904 | 2.099363e-54 | -8.615850e-47 |
| Msa1359690 | Msa1437640 | 0.829600 | 4.702014e-55 | -8.615850e-47 |
| Msa1392580 | Msa1437640 | 0.817647 | 2.959232e-52 | -8.615850e-47 |
| Msa1395190 | Msa1437640 | 0.847825 | 9.050206e-60 | -8.615850e-47 |
| Msa1397400 | Msa1437640 | 0.827706 | 1.349133e-54 | -8.615850e-47 |
| Msa1415540 | Msa1437640 | 0.801542 | 8.572735e-49 | -8.615850e-47 |
| Msa1420950 | Msa1437640 | 0.816244 | 6.109671e-52 | -8.615850e-47 |
| Msa1427200 | Msa1437640 | 0.818119 | 2.315072e-52 | -8.615850e-47 |
| Msa0626450 | Msa1437640 | 0.801465 | 8.888269e-49 | -8.615850e-47 |
| Msa0644410 | Msa1437640 | 0.812469 | 4.173867e-51 | -8.615850e-47 |
| Msa0658640 | Msa1437640 | 0.822821 | 1.930013e-53 | -8.615850e-47 |
| Msa0661150 | Msa1437640 | 0.813988 | 1.937034e-51 | -8.615850e-47 |
| Msa0666700 | Msa1437640 | 0.807408 | 5.129609e-50 | -8.615850e-47 |
| Msa0709200 | Msa1437640 | 0.800355 | 1.498243e-48 | -8.615850e-47 |
| Msa0712110 | Msa1437640 | 0.831217 | 1.891618e-55 | -8.615850e-47 |
| Msa0735780 | Msa1437640 | 0.810390 | 1.180267e-50 | -8.615850e-47 |
| Msa0741220 | Msa1437640 | 0.803756 | 2.994613e-49 | -8.615850e-47 |
| Msa0749890 | Msa1437640 | 0.898345 | 5.812108e-77 | -8.615850e-47 |
| Msa0761670 | Msa1437640 | 0.814397 | 1.573189e-51 | -8.615850e-47 |
| Msa0773630 | Msa1437640 | 0.800063 | 1.717728e-48 | -8.615850e-47 |
| Msa0783530 | Msa1437640 | 0.802542 | 5.340938e-49 | -8.615850e-47 |
| Msa0795870 | Msa1437640 | 0.833343 | 5.632771e-56 | -8.615850e-47 |
| Msa0824450 | Msa1437640 | 0.821072 | 4.903052e-53 | -8.615850e-47 |
| Msa0830130 | Msa1437640 | 0.935827 | 4.589802e-97 | -8.615850e-47 |
| Msa0830460 | Msa1437640 | 0.924545 | 6.108495e-90 | -8.615850e-47 |
| Msa0833650 | Msa1437640 | 0.841171 | 5.585559e-58 | -8.615850e-47 |
| Msa0136650 | Msa1437640 | 0.807758 | 4.322503e-50 | -8.615850e-47 |
| Msa0140280 | Msa1437640 | 0.826661 | 2.399858e-54 | -8.615850e-47 |
| Msa0158860 | Msa1437640 | 0.811768 | 5.933519e-51 | -8.615850e-47 |
| Msa0174450 | Msa1437640 | 0.801077 | 1.067339e-48 | -8.615850e-47 |
| Msa0182190 | Msa1437640 | 0.815521 | 8.861428e-52 | -8.615850e-47 |
| Msa0182240 | Msa1437640 | 0.822715 | 2.042073e-53 | -8.615850e-47 |
| Msa0190570 | Msa1437640 | 0.806607 | 7.575738e-50 | -8.615850e-47 |
| Msa0200050 | Msa1437640 | 0.819549 | 1.095639e-52 | -8.615850e-47 |
| Msa0223210 | Msa1437640 | 0.810142 | 1.335043e-50 | -8.615850e-47 |
| Msa0225860 | Msa1437640 | 0.843118 | 1.705972e-58 | -8.615850e-47 |
| Msa1224930 | Msa1437640 | 0.815550 | 8.729434e-52 | -8.615850e-47 |
| Msa1226520 | Msa1437640 | 0.820740 | 5.846497e-53 | -8.615850e-47 |
| Msa1236410 | Msa1437640 | 0.804481 | 2.115826e-49 | -8.615850e-47 |
| Msa1292590 | Msa1437640 | 0.806268 | 8.931676e-50 | -8.615850e-47 |
| Msa1307630 | Msa1437640 | 0.836454 | 9.272607e-57 | -8.615850e-47 |
| Msa1320670 | Msa1437640 | 0.802630 | 5.121039e-49 | -8.615850e-47 |
| Msa1343170 | Msa1437640 | 0.807668 | 4.516295e-50 | -8.615850e-47 |
| Msa0369790 | Msa1437640 | 0.805537 | 1.272482e-49 | -8.615850e-47 |
| Msa0380620 | Msa1437640 | 0.815421 | 9.323967e-52 | -8.615850e-47 |
| Msa0380670 | Msa1437640 | 0.806195 | 9.255327e-50 | -8.615850e-47 |
| Msa0430260 | Msa1437640 | 0.809767 | 1.608037e-50 | -8.615850e-47 |
| Msa0430300 | Msa1437640 | 0.818337 | 2.066327e-52 | -8.615850e-47 |
| Msa0464000 | Msa1437640 | 0.804410 | 2.189642e-49 | -8.615850e-47 |
| Msa0472950 | Msa1437640 | 0.819882 | 9.193918e-53 | -8.615850e-47 |
| Msa0997920 | Msa1437640 | 0.823362 | 1.442986e-53 | -8.615850e-47 |
| Msa1042160 | Msa1437640 | 0.803807 | 2.922353e-49 | -8.615850e-47 |
| Msa1042190 | Msa1437640 | 0.805578 | 1.247908e-49 | -8.615850e-47 |
| Msa1081390 | Msa1437640 | 0.803896 | 2.800225e-49 | -8.615850e-47 |
| Msa0242590 | Msa1437640 | 0.817302 | 3.538145e-52 | -8.615850e-47 |
| Msa0260510 | Msa1437640 | 0.812611 | 3.885060e-51 | -8.615850e-47 |
| Msa0280790 | Msa1437640 | 0.802343 | 5.869500e-49 | -8.615850e-47 |
| Msa0298470 | Msa1437640 | 0.854267 | 1.379507e-61 | -8.615850e-47 |
| Msa0330380 | Msa1437640 | 0.821417 | 4.082744e-53 | -8.615850e-47 |
| Msa0339650 | Msa1437640 | 0.814690 | 1.354782e-51 | -8.615850e-47 |
| Msa0340500 | Msa1437640 | 0.827935 | 1.188283e-54 | -8.615850e-47 |
| Msa1132840 | Msa1437640 | 0.840614 | 7.819041e-58 | -8.615850e-47 |
| Msa1186020 | Msa1437640 | 0.815800 | 7.679693e-52 | -8.615850e-47 |
| Msa1192570 | Msa1437640 | 0.824372 | 8.366556e-54 | -8.615850e-47 |
| Msa1200890 | Msa1437640 | 0.804141 | 2.491207e-49 | -8.615850e-47 |
| Msa1208950 | Msa1437640 | 0.820557 | 6.442503e-53 | -8.615850e-47 |
| Msa1215870 | Msa1437640 | 0.802851 | 4.610746e-49 | -8.615850e-47 |
| Msa0484380 | Msa1437640 | 0.810125 | 1.346207e-50 | -8.615850e-47 |
| Msa0528570 | Msa1437640 | 0.807778 | 4.280078e-50 | -8.615850e-47 |
| Msa0530780 | Msa1437640 | 0.804589 | 2.008967e-49 | -8.615850e-47 |
| Msa0548470 | Msa1437640 | 0.805783 | 1.130014e-49 | -8.615850e-47 |
| Msa0567170 | Msa1437640 | 0.818583 | 1.817436e-52 | -8.615850e-47 |
| Msa0580370 | Msa1437640 | 0.840149 | 1.034743e-57 | -8.615850e-47 |
| Msa0597270 | Msa1437640 | 0.802319 | 5.936756e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437640 | MtrunA17_Chr5g0396531 | 94.902 | 255 | 13 | 0 | 22 | 276 | 311 | 565 | 4.11e-180 | 509 |
| Msa1437640 | MtrunA17_Chr8g0388301 | 78.346 | 254 | 53 | 1 | 23 | 276 | 325 | 576 | 2.25e-147 | 426 |
| Msa1437640 | MtrunA17_Chr8g0346901 | 67.188 | 256 | 76 | 2 | 22 | 276 | 327 | 575 | 2.58e-126 | 373 |
| Msa1437640 | MtrunA17_Chr3g0126781 | 64.231 | 260 | 89 | 3 | 22 | 279 | 308 | 565 | 6.14e-120 | 356 |
| Msa1437640 | MtrunA17_Chr7g0275661 | 68.924 | 251 | 70 | 3 | 22 | 271 | 327 | 570 | 1.65e-118 | 353 |
| Msa1437640 | MtrunA17_Chr8g0366091 | 41.296 | 247 | 126 | 4 | 28 | 267 | 213 | 447 | 3.01e-51 | 178 |
| Msa1437640 | MtrunA17_Chr5g0420771 | 40.637 | 251 | 126 | 5 | 28 | 267 | 215 | 453 | 3.01e-50 | 176 |
| Msa1437640 | MtrunA17_Chr7g0220391 | 39.113 | 248 | 129 | 4 | 28 | 265 | 211 | 446 | 6.07e-47 | 166 |
| Msa1437640 | MtrunA17_Chr7g0255481 | 39.474 | 228 | 111 | 5 | 28 | 248 | 158 | 365 | 1.06e-46 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437640 | AT2G46500.1 | 65.882 | 255 | 80 | 1 | 22 | 276 | 301 | 548 | 7.81e-126 | 371 |
| Msa1437640 | AT2G46500.2 | 65.882 | 255 | 80 | 1 | 22 | 276 | 301 | 548 | 7.81e-126 | 371 |
| Msa1437640 | AT5G24240.1 | 63.115 | 244 | 87 | 2 | 22 | 264 | 303 | 544 | 1.26e-111 | 335 |
| Msa1437640 | AT5G24240.2 | 63.115 | 244 | 87 | 2 | 22 | 264 | 303 | 544 | 1.26e-111 | 335 |
| Msa1437640 | AT2G03890.1 | 40.000 | 250 | 128 | 4 | 28 | 267 | 218 | 455 | 2.13e-50 | 176 |
| Msa1437640 | AT1G13640.1 | 41.379 | 232 | 113 | 3 | 28 | 248 | 210 | 429 | 2.82e-50 | 176 |
| Msa1437640 | AT1G13640.2 | 41.379 | 232 | 113 | 3 | 28 | 248 | 210 | 429 | 2.82e-50 | 176 |
| Msa1437640 | AT3G56600.2 | 39.841 | 251 | 122 | 4 | 28 | 266 | 153 | 386 | 4.65e-50 | 174 |
| Msa1437640 | AT3G56600.1 | 39.841 | 251 | 122 | 4 | 28 | 266 | 156 | 389 | 5.71e-50 | 173 |
| Msa1437640 | AT3G56600.3 | 39.841 | 251 | 122 | 4 | 28 | 266 | 156 | 389 | 5.71e-50 | 173 |
| Msa1437640 | AT2G03890.2 | 39.759 | 249 | 128 | 4 | 29 | 267 | 99 | 335 | 1.03e-49 | 172 |
| Msa1437640 | AT2G40850.1 | 38.976 | 254 | 131 | 5 | 28 | 271 | 173 | 412 | 2.90e-49 | 172 |
| Msa1437640 | AT1G26270.1 | 40.789 | 228 | 116 | 3 | 28 | 248 | 214 | 429 | 2.47e-48 | 171 |
| Msa1437640 | AT2G46500.3 | 61.000 | 100 | 32 | 1 | 22 | 121 | 301 | 393 | 2.51e-34 | 129 |
| Msa1437640 | AT1G27570.2 | 30.612 | 245 | 141 | 7 | 10 | 242 | 361 | 588 | 1.02e-25 | 107 |
| Msa1437640 | AT1G27570.1 | 30.612 | 245 | 141 | 7 | 10 | 242 | 370 | 597 | 1.53e-25 | 107 |
Find 144 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTGGTAGCAATGATTTC+TGG | 0.112220 | tig0028351:+8010 | None:intergenic |
| GAAGAAAACCAGTCCATATT+TGG | 0.218354 | tig0028351:-7860 | Msa1437640:three_prime_UTR |
| GCACATTTGATTGGCTTTAC+TGG | 0.236333 | tig0028351:-8284 | Msa1437640:CDS |
| ATAGAGCTTCTGAAATATTA+TGG | 0.291106 | tig0028351:-8192 | Msa1437640:CDS |
| CTGTGTTCCGCCTACGGTTA+TGG | 0.315164 | tig0028351:-9450 | Msa1437640:CDS |
| AGAAGTTGCGGCTTATATAT+TGG | 0.319276 | tig0028351:-9525 | Msa1437640:CDS |
| TCCATATTTGGATGGACTTA+AGG | 0.329114 | tig0028351:-7848 | Msa1437640:three_prime_UTR |
| TACTGGTAATGTTGTTCATT+TGG | 0.334044 | tig0028351:-10237 | Msa1437640:five_prime_UTR |
| TGGTAAGAGGTGTTCTAATC+AGG | 0.334243 | tig0028351:-7806 | Msa1437640:three_prime_UTR |
| GCCTGGTAGCAATGATTTCT+GGG | 0.343431 | tig0028351:+8011 | None:intergenic |
| ACCTTAAGTCCATCCAAATA+TGG | 0.345436 | tig0028351:+7847 | None:intergenic |
| ATCCTAGGGTTCACGAAAAT+CGG | 0.363297 | tig0028351:+9801 | None:intergenic |
| GTGGGGATTGTGGCTCTTTG+AGG | 0.363682 | tig0028351:-9391 | Msa1437640:CDS |
| TTGAAGATTGCACATTTGAT+TGG | 0.370246 | tig0028351:-8293 | Msa1437640:CDS |
| AAGCAAAATCTAGTTTCTAA+TGG | 0.377281 | tig0028351:-10308 | Msa1437640:five_prime_UTR |
| ACCAAACGCGGTCCAGCCTT+TGG | 0.378332 | tig0028351:+9497 | None:intergenic |
| GCCATTGGTTCCTCATCAAT+TGG | 0.383037 | tig0028351:+9630 | None:intergenic |
| CGAATTTGTATCGCAGATCA+TGG | 0.384306 | tig0028351:-7969 | Msa1437640:CDS |
| TCCAAAGGCTGGACCGCGTT+TGG | 0.385239 | tig0028351:-9498 | Msa1437640:CDS |
| AATCCCGCGTGATGCCGTTT+CGG | 0.390366 | tig0028351:-9600 | Msa1437640:CDS |
| CGTGATGCCGTTTCGGTGAA+TGG | 0.391992 | tig0028351:-9593 | Msa1437640:CDS |
| CCACAATGTTGTTGAAGAAA+GGG | 0.392633 | tig0028351:-8128 | Msa1437640:CDS |
| ATGATAGATGCAACTTTCAA+TGG | 0.393750 | tig0028351:-9753 | Msa1437640:five_prime_UTR |
| GATGGTAATTGTGAGGATAT+TGG | 0.395024 | tig0028351:-9326 | Msa1437640:CDS |
| AAACAATATAAGGAGGTGAT+TGG | 0.396649 | tig0028351:+7745 | None:intergenic |
| TCCACAATGTTGTTGAAGAA+AGG | 0.400392 | tig0028351:-8129 | Msa1437640:CDS |
| TTGAAGAGAGGGACAAAGGT+TGG | 0.402804 | tig0028351:-9563 | Msa1437640:CDS |
| CAGAAGTTTATGAGTAATGA+TGG | 0.410311 | tig0028351:-9344 | Msa1437640:CDS |
| TCAACTGTATCGGGAGAGTA+TGG | 0.410892 | tig0028351:+8246 | None:intergenic |
| GAGCCACAATCCCCACCATC+AGG | 0.414679 | tig0028351:+9398 | None:intergenic |
| GTTCCCTCAGAAGATCTAAC+AGG | 0.417109 | tig0028351:+9711 | None:intergenic |
| TAGGAATTGTATTAAAAGAA+AGG | 0.420136 | tig0028351:-10117 | Msa1437640:five_prime_UTR |
| GCTGGACCGCGTTTGGTGTC+TGG | 0.423380 | tig0028351:-9491 | Msa1437640:CDS |
| AGGAATTGTATTAAAAGAAA+GGG | 0.424400 | tig0028351:-10116 | Msa1437640:five_prime_UTR |
| GAATCAGGATGAGGTTGTTA+AGG | 0.426840 | tig0028351:-9862 | Msa1437640:five_prime_UTR |
| ATAGGAACGTTGCACATCTT+AGG | 0.430624 | tig0028351:-10136 | Msa1437640:five_prime_UTR |
| AAATGGTGACTTACTTTCTC+AGG | 0.430834 | tig0028351:+9152 | None:intergenic |
| AGTGTTCTAGCACTCTCAAC+TGG | 0.433384 | tig0028351:+8159 | None:intergenic |
| CTTAAGGTTGTTGTATAAGA+AGG | 0.434772 | tig0028351:-7832 | Msa1437640:three_prime_UTR |
| CTCTTTGAGGATGGATCATA+AGG | 0.440712 | tig0028351:-9378 | Msa1437640:CDS |
| AAGACAATAACCATGATCAA+TGG | 0.441498 | tig0028351:+9175 | None:intergenic |
| ATACTCTCTGGATGCTGAAA+AGG | 0.444836 | tig0028351:-8217 | Msa1437640:CDS |
| GAATTTGAATAATCAGAATC+AGG | 0.447450 | tig0028351:-9877 | Msa1437640:five_prime_UTR |
| AACAATATAAGGAGGTGATT+GGG | 0.456381 | tig0028351:+7746 | None:intergenic |
| CTGCTCATTCCCATTGATCA+TGG | 0.456539 | tig0028351:-9185 | Msa1437640:CDS |
| AGCTTCTGAAATATTATGGT+TGG | 0.458037 | tig0028351:-8188 | Msa1437640:CDS |
| CAGATCATGGATTCCCGCCT+TGG | 0.466401 | tig0028351:-7956 | Msa1437640:CDS |
| GGATTGTGGCTCTTTGAGGA+TGG | 0.473673 | tig0028351:-9387 | Msa1437640:CDS |
| TACCCTGATGGTGGGGATTG+TGG | 0.474991 | tig0028351:-9401 | Msa1437640:CDS |
| GCTTCTGAAATATTATGGTT+GGG | 0.475469 | tig0028351:-8187 | Msa1437640:CDS |
| AGACAATAACCATGATCAAT+GGG | 0.483074 | tig0028351:+9176 | None:intergenic |
| TATATGTAATCAACTGTATC+GGG | 0.487936 | tig0028351:+8237 | None:intergenic |
| GTTAGATCTTCTGAGGGAAC+AGG | 0.492026 | tig0028351:-9708 | Msa1437640:five_prime_UTR |
| AAAATCAGATTCCTCGTGCC+TGG | 0.495231 | tig0028351:+7994 | None:intergenic |
| TATAAGAAGGTGATGGTAAG+AGG | 0.499120 | tig0028351:-7819 | Msa1437640:three_prime_UTR |
| AATTTGAGTTTCAGATTGAT+CGG | 0.502943 | tig0028351:-10160 | Msa1437640:five_prime_UTR |
| GTGTTACTGCTCCTCGTCTA+CGG | 0.503504 | tig0028351:+10408 | None:intergenic |
| TTGAAGAAAGGGGTTGAGAG+AGG | 0.503562 | tig0028351:-8117 | Msa1437640:CDS |
| CGTTTAATTACCCTGATGGT+GGG | 0.504414 | tig0028351:-9409 | Msa1437640:CDS |
| GCGAAAAGCTTGATGATAAG+AGG | 0.505944 | tig0028351:-10043 | Msa1437640:five_prime_UTR |
| GTATATGTAATCAACTGTAT+CGG | 0.506999 | tig0028351:+8236 | None:intergenic |
| GGGATTGAAGAGAGGGACAA+AGG | 0.509599 | tig0028351:-9567 | Msa1437640:CDS |
| TGTTCTAATCAGGGACATAT+AGG | 0.511537 | tig0028351:-7796 | Msa1437640:three_prime_UTR |
| TCCCTCACCATTCACCGAAA+CGG | 0.511618 | tig0028351:+9586 | None:intergenic |
| TTGTTTAGAAAAGAGTCAAA+TGG | 0.514272 | tig0028351:-9215 | Msa1437640:CDS |
| GTAATAATATGCAATCTCTT+CGG | 0.516077 | tig0028351:+7772 | None:intergenic |
| ATGGTGAGGGATTGAAGAGA+GGG | 0.516819 | tig0028351:-9574 | Msa1437640:CDS |
| TTTCGACAGCTCACCAAGGC+GGG | 0.517562 | tig0028351:+7943 | None:intergenic |
| TAAGAATGGCGAATGCAGAT+AGG | 0.518671 | tig0028351:-9253 | Msa1437640:CDS |
| CAATTGCATCAGTGAAAATG+AGG | 0.519789 | tig0028351:-10361 | Msa1437640:five_prime_UTR |
| AAAGAGTACGGTGTAACTAC+TGG | 0.519841 | tig0028351:-10254 | Msa1437640:five_prime_UTR |
| CGTTGGAAGCATCATGTGTA+GGG | 0.519995 | tig0028351:-8079 | Msa1437640:CDS |
| GCGGGATTATTAACCGCCAT+TGG | 0.522441 | tig0028351:+9615 | None:intergenic |
| AGTTGATTACATATACTCTC+TGG | 0.522946 | tig0028351:-8229 | Msa1437640:CDS |
| GCGAATGCAGATAGGCATGC+AGG | 0.523425 | tig0028351:-9245 | Msa1437640:CDS |
| CATGATGCTTCCAACGGCAT+AGG | 0.525963 | tig0028351:+8086 | None:intergenic |
| CACAATGTTGTTGAAGAAAG+GGG | 0.526814 | tig0028351:-8127 | Msa1437640:CDS |
| ATATTGGATCATCCAAAGGC+TGG | 0.527791 | tig0028351:-9509 | Msa1437640:CDS |
| CCCTTTCTTCAACAACATTG+TGG | 0.535835 | tig0028351:+8128 | None:intergenic |
| ATCTTATGCACCTCTTGCAC+AGG | 0.541451 | tig0028351:+9290 | None:intergenic |
| AAGGTTATAGAACAACCCTC+TGG | 0.544988 | tig0028351:-9843 | Msa1437640:five_prime_UTR |
| TCAGATTCCAACACACGCAT+TGG | 0.545912 | tig0028351:+10386 | None:intergenic |
| TGTATTAAAAGAAAGGGGAA+AGG | 0.545961 | tig0028351:-10110 | Msa1437640:five_prime_UTR |
| TTGGTGTCTGGTGAAGCGAT+TGG | 0.546477 | tig0028351:-9479 | Msa1437640:CDS |
| AGTTTCAGATTGATCGGCAT+AGG | 0.546957 | tig0028351:-10154 | Msa1437640:five_prime_UTR |
| GGAATTGTATTAAAAGAAAG+GGG | 0.547344 | tig0028351:-10115 | Msa1437640:five_prime_UTR |
| AGGAGCTGTGAGAGAAGTTG+CGG | 0.549114 | tig0028351:-9537 | Msa1437640:CDS |
| AAGTCCATCCAAATATGGAC+TGG | 0.551955 | tig0028351:+7852 | None:intergenic |
| CAGTGTGCTTGATATAAGAA+TGG | 0.555819 | tig0028351:-9267 | Msa1437640:CDS |
| ATGATGCTTCCAACGGCATA+GGG | 0.557381 | tig0028351:+8087 | None:intergenic |
| TAAACCTGTTAGATCTTCTG+AGG | 0.559006 | tig0028351:-9715 | Msa1437640:five_prime_UTR |
| GCCGTTTCGGTGAATGGTGA+GGG | 0.561503 | tig0028351:-9587 | Msa1437640:CDS |
| TTGAGGATGGATCATAAGGT+GGG | 0.562337 | tig0028351:-9374 | Msa1437640:CDS |
| GGTCTCACTCCCTATGCCGT+TGG | 0.563252 | tig0028351:-8096 | Msa1437640:CDS |
| AGAGGGACAAAGGTTGGAGA+AGG | 0.563732 | tig0028351:-9557 | Msa1437640:CDS |
| GAATAATCAGAATCAGGATG+AGG | 0.566712 | tig0028351:-9871 | Msa1437640:five_prime_UTR |
| AATGGTGAGGGATTGAAGAG+AGG | 0.566744 | tig0028351:-9575 | Msa1437640:CDS |
| CCGTTGGAAGCATCATGTGT+AGG | 0.567994 | tig0028351:-8080 | Msa1437640:CDS |
| GCGTTTAATTACCCTGATGG+TGG | 0.572883 | tig0028351:-9410 | Msa1437640:CDS |
| TACTTCATGCAAGATTTCAA+AGG | 0.573102 | tig0028351:-9678 | Msa1437640:five_prime_UTR |
| GCCAATTGATGAGGAACCAA+TGG | 0.574717 | tig0028351:-9631 | Msa1437640:CDS |
| TACGGTGACGTATATCAGAA+TGG | 0.576837 | tig0028351:+10426 | None:intergenic |
| GCCCAGAAATCATTGCTACC+AGG | 0.583800 | tig0028351:-8012 | Msa1437640:CDS |
| GGTAAGAGGTGTTCTAATCA+GGG | 0.586502 | tig0028351:-7805 | Msa1437640:three_prime_UTR |
| AGATCTTCTGAGGGAACAGG+TGG | 0.592366 | tig0028351:-9705 | Msa1437640:five_prime_UTR |
| GTTTAATTACCCTGATGGTG+GGG | 0.592966 | tig0028351:-9408 | Msa1437640:CDS |
| TGCCGTTTCGGTGAATGGTG+AGG | 0.594657 | tig0028351:-9588 | Msa1437640:CDS |
| CATGCAAGATTTCAAAGGTG+TGG | 0.594948 | tig0028351:-9673 | Msa1437640:five_prime_UTR |
| GAAGCGTTTAATTACCCTGA+TGG | 0.595781 | tig0028351:-9413 | Msa1437640:CDS |
| AAAACCAGTCCATATTTGGA+TGG | 0.597398 | tig0028351:-7856 | Msa1437640:three_prime_UTR |
| TTATATATTGGATCATCCAA+AGG | 0.598620 | tig0028351:-9513 | Msa1437640:CDS |
| TTTGAGGATGGATCATAAGG+TGG | 0.602051 | tig0028351:-9375 | Msa1437640:CDS |
| GTTGTTGTATAAGAAGGTGA+TGG | 0.602695 | tig0028351:-7826 | Msa1437640:three_prime_UTR |
| CGAATGCAGATAGGCATGCA+GGG | 0.605455 | tig0028351:-9244 | Msa1437640:CDS |
| TTCACCGAAACGGCATCACG+CGG | 0.610461 | tig0028351:+9596 | None:intergenic |
| GAGTATGGCTGACGTGCTTG+AGG | 0.611194 | tig0028351:+8261 | None:intergenic |
| TCTATCATATCCCATAGGAA+AGG | 0.618347 | tig0028351:+9768 | None:intergenic |
| AAACCTGTTAGATCTTCTGA+GGG | 0.622266 | tig0028351:-9714 | Msa1437640:five_prime_UTR |
| CCTACACATGATGCTTCCAA+CGG | 0.625450 | tig0028351:+8080 | None:intergenic |
| GAACAAAGAATCAGTGATCG+AGG | 0.625787 | tig0028351:-8049 | Msa1437640:CDS |
| AGTAACACCAATGCGTGTGT+TGG | 0.628419 | tig0028351:-10393 | Msa1437640:five_prime_UTR |
| TCAACAACATTGTGGAAATG+CGG | 0.628972 | tig0028351:+8136 | None:intergenic |
| AATGCGGTGATGAAAGAGTA+CGG | 0.631647 | tig0028351:-10266 | Msa1437640:five_prime_UTR |
| AGCCACAATCCCCACCATCA+GGG | 0.637152 | tig0028351:+9399 | None:intergenic |
| TTGCATCTATCATATCCCAT+AGG | 0.637801 | tig0028351:+9763 | None:intergenic |
| TGAGGATGGATCATAAGGTG+GGG | 0.651663 | tig0028351:-9373 | Msa1437640:CDS |
| TCTTGCACAGGAAAAGCACC+AGG | 0.657475 | tig0028351:+9302 | None:intergenic |
| AATTGATGAGGAACCAATGG+CGG | 0.662251 | tig0028351:-9628 | Msa1437640:CDS |
| TGTGAGGACAATGTGTGGGA+AGG | 0.662882 | tig0028351:-10183 | Msa1437640:five_prime_UTR |
| ATTGTTGTGAGGACAATGTG+TGG | 0.666886 | tig0028351:-10188 | Msa1437640:five_prime_UTR |
| TTGTTGTGAGGACAATGTGT+GGG | 0.668421 | tig0028351:-10187 | Msa1437640:five_prime_UTR |
| AATCATTGCTACCAGGCACG+AGG | 0.669521 | tig0028351:-8005 | Msa1437640:CDS |
| CACCGCACCATAACCGTAGG+CGG | 0.670788 | tig0028351:+9443 | None:intergenic |
| GATATACGTCACCGTAGACG+AGG | 0.671434 | tig0028351:-10419 | Msa1437640:five_prime_UTR |
| AATTGTGAGGATATTGGACC+TGG | 0.674707 | tig0028351:-9320 | Msa1437640:CDS |
| ATTTCGACAGCTCACCAAGG+CGG | 0.700271 | tig0028351:+7942 | None:intergenic |
| TGGATTCGCTTGAACAACGA+CGG | 0.702171 | tig0028351:+10446 | None:intergenic |
| AAACACCGCACCATAACCGT+AGG | 0.703540 | tig0028351:+9440 | None:intergenic |
| GATCTTCTGAGGGAACAGGT+GGG | 0.712393 | tig0028351:-9704 | Msa1437640:five_prime_UTR |
| GAGTAATGATGGTAATTGTG+AGG | 0.714535 | tig0028351:-9333 | Msa1437640:CDS |
| TCTATTTCGACAGCTCACCA+AGG | 0.716631 | tig0028351:+7939 | None:intergenic |
| AGAATTATCTCGTAACAATG+CGG | 0.734694 | tig0028351:-10282 | Msa1437640:five_prime_UTR |
| TTCCGCCTACGGTTATGGTG+CGG | 0.755705 | tig0028351:-9445 | Msa1437640:CDS |
| GCTTCACCAGACACCAAACG+CGG | 0.759039 | tig0028351:+9485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATCTTATTGTTAAAAAAT+CGG | - | tig0028351:8186-8205 | Msa1437640:CDS | 15.0% |
| !! | AATATTGAATATTGAATCTA+CGG | - | tig0028351:9350-9369 | Msa1437640:CDS | 15.0% |
| !! | ACAATAAAAATATATCTCTT+AGG | + | tig0028351:9395-9414 | None:intergenic | 15.0% |
| !! | TAGGAATTGTATTAAAAGAA+AGG | - | tig0028351:8051-8070 | Msa1437640:CDS | 20.0% |
| !! | AGGAATTGTATTAAAAGAAA+GGG | - | tig0028351:8052-8071 | Msa1437640:CDS | 20.0% |
| !! | AATAAAACAAGAATGTGAAA+TGG | + | tig0028351:9036-9055 | None:intergenic | 20.0% |
| !! | AAAACATTATAATACTGCAT+AGG | + | tig0028351:9061-9080 | None:intergenic | 20.0% |
| !! | TATACAAAGTTAGCATAAAA+AGG | + | tig0028351:9292-9311 | None:intergenic | 20.0% |
| !! | AAGCAAAATCTAGTTTCTAA+TGG | - | tig0028351:7860-7879 | Msa1437640:three_prime_UTR | 25.0% |
| !! | ATATGATTTTCATTGTTGTG+AGG | - | tig0028351:7969-7988 | Msa1437640:CDS | 25.0% |
| !! | AATTTGAGTTTCAGATTGAT+CGG | - | tig0028351:8008-8027 | Msa1437640:CDS | 25.0% |
| ! | GGAATTGTATTAAAAGAAAG+GGG | - | tig0028351:8053-8072 | Msa1437640:CDS | 25.0% |
| !!! | TGCTACTTTTGTTCATAATA+AGG | - | tig0028351:8219-8238 | Msa1437640:CDS | 25.0% |
| ! | GAATTTGAATAATCAGAATC+AGG | - | tig0028351:8291-8310 | Msa1437640:CDS | 25.0% |
| ! | AACAAAAAATCAAAACCAGA+GGG | + | tig0028351:8343-8362 | None:intergenic | 25.0% |
| ! | TAACAAAAAATCAAAACCAG+AGG | + | tig0028351:8344-8363 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAATTGATCCTA+GGG | + | tig0028351:8384-8403 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAAATTGATCCT+AGG | + | tig0028351:8385-8404 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTTCCTTTCCTA+TGG | - | tig0028351:8389-8408 | Msa1437640:intron | 25.0% |
| !!! | CAATTTTTTTCCTTTCCTAT+GGG | - | tig0028351:8390-8409 | Msa1437640:intron | 25.0% |
| ! | ACTTTCAATGGTTTGAAAAA+AGG | - | tig0028351:8427-8446 | Msa1437640:intron | 25.0% |
| ! | TTATATATTGGATCATCCAA+AGG | - | tig0028351:8655-8674 | Msa1437640:intron | 25.0% |
| ! | TTGTTTAGAAAAGAGTCAAA+TGG | - | tig0028351:8953-8972 | Msa1437640:intron | 25.0% |
| !! | AATGTTTTCTATGTTCTGTT+TGG | - | tig0028351:9073-9092 | Msa1437640:intron | 25.0% |
| !! | TCCATAGTATAGATCTATTT+TGG | - | tig0028351:9180-9199 | Msa1437640:CDS | 25.0% |
| ! | TCCAAAATAGATCTATACTA+TGG | + | tig0028351:9184-9203 | None:intergenic | 25.0% |
| !! | TAACCATGTTCGTTATATTT+TGG | - | tig0028351:9463-9482 | Msa1437640:CDS | 25.0% |
| ! | AACAAGTTATAAAAGTAGTC+TGG | + | tig0028351:9662-9681 | None:intergenic | 25.0% |
| !! | TTCTTATACATCATTTTGCA+AGG | - | tig0028351:9693-9712 | Msa1437640:five_prime_UTR | 25.0% |
| ! | TATATGTAATCAACTGTATC+GGG | + | tig0028351:9934-9953 | None:intergenic | 25.0% |
| ! | GTATATGTAATCAACTGTAT+CGG | + | tig0028351:9935-9954 | None:intergenic | 25.0% |
| !!! | ATAGAGCTTCTGAAATATTA+TGG | - | tig0028351:9976-9995 | Msa1437640:five_prime_UTR | 25.0% |
| !! | TTTTTCTTTGTCTGATTCAT+AGG | - | tig0028351:10257-10276 | Msa1437640:five_prime_UTR | 25.0% |
| ! | GTAATAATATGCAATCTCTT+CGG | + | tig0028351:10399-10418 | None:intergenic | 25.0% |
| AAACACGCAAAAATGTTTCA+TGG | - | tig0028351:7834-7853 | Msa1437640:three_prime_UTR | 30.0% | |
| AGAATTATCTCGTAACAATG+CGG | - | tig0028351:7886-7905 | Msa1437640:three_prime_UTR | 30.0% | |
| ! | TACTGGTAATGTTGTTCATT+TGG | - | tig0028351:7931-7950 | Msa1437640:CDS | 30.0% |
| TGTATTAAAAGAAAGGGGAA+AGG | - | tig0028351:8058-8077 | Msa1437640:CDS | 30.0% | |
| ATGATAGATGCAACTTTCAA+TGG | - | tig0028351:8415-8434 | Msa1437640:intron | 30.0% | |
| TACTTCATGCAAGATTTCAA+AGG | - | tig0028351:8490-8509 | Msa1437640:intron | 30.0% | |
| !! | TGTTTTTAAGCCAATTGATG+AGG | - | tig0028351:8528-8547 | Msa1437640:intron | 30.0% |
| CAGAAGTTTATGAGTAATGA+TGG | - | tig0028351:8824-8843 | Msa1437640:intron | 30.0% | |
| AGACAATAACCATGATCAAT+GGG | + | tig0028351:8995-9014 | None:intergenic | 30.0% | |
| AAGACAATAACCATGATCAA+TGG | + | tig0028351:8996-9015 | None:intergenic | 30.0% | |
| ! | TCTATACTATGGATTGACAT+CGG | + | tig0028351:9173-9192 | None:intergenic | 30.0% |
| GAGATTCATCGTAATAAATC+GGG | + | tig0028351:9226-9245 | None:intergenic | 30.0% | |
| CGAGATTCATCGTAATAAAT+CGG | + | tig0028351:9227-9246 | None:intergenic | 30.0% | |
| TTACTTAAACTTAGTGCAGT+CGG | - | tig0028351:9265-9284 | Msa1437640:CDS | 30.0% | |
| CATCCAAAATATAACGAACA+TGG | + | tig0028351:9469-9488 | None:intergenic | 30.0% | |
| GATGTCAGTTTAGACTTATA+TGG | - | tig0028351:9545-9564 | Msa1437640:CDS | 30.0% | |
| AATCTTGCAATAACTACTAC+TGG | + | tig0028351:9595-9614 | None:intergenic | 30.0% | |
| GAACTTAATACGTATGTCAT+AGG | - | tig0028351:9783-9802 | Msa1437640:five_prime_UTR | 30.0% | |
| TTGAAGATTGCACATTTGAT+TGG | - | tig0028351:9875-9894 | Msa1437640:five_prime_UTR | 30.0% | |
| AGTTGATTACATATACTCTC+TGG | - | tig0028351:9939-9958 | Msa1437640:five_prime_UTR | 30.0% | |
| !! | AGCTTCTGAAATATTATGGT+TGG | - | tig0028351:9980-9999 | Msa1437640:five_prime_UTR | 30.0% |
| !! | GCTTCTGAAATATTATGGTT+GGG | - | tig0028351:9981-10000 | Msa1437640:five_prime_UTR | 30.0% |
| CTTAAGGTTGTTGTATAAGA+AGG | - | tig0028351:10336-10355 | Msa1437640:five_prime_UTR | 30.0% | |
| AACAATATAAGGAGGTGATT+GGG | + | tig0028351:10425-10444 | None:intergenic | 30.0% | |
| AAACAATATAAGGAGGTGAT+TGG | + | tig0028351:10426-10445 | None:intergenic | 30.0% | |
| !! | CACCTCCTTATATTGTTTTT+CGG | - | tig0028351:10428-10447 | Msa1437640:five_prime_UTR | 30.0% |
| !! | ACCTCCTTATATTGTTTTTC+GGG | - | tig0028351:10429-10448 | Msa1437640:five_prime_UTR | 30.0% |
| CAATCCCGAAAAACAATATA+AGG | + | tig0028351:10436-10455 | None:intergenic | 30.0% | |
| CAATTGCATCAGTGAAAATG+AGG | - | tig0028351:7807-7826 | Msa1437640:three_prime_UTR | 35.0% | |
| !!! | AGGTTTTGTTGATCTTGTTG+AGG | - | tig0028351:8078-8097 | Msa1437640:CDS | 35.0% |
| !!! | GAACAAGAGTTTTTTTGCAG+CGG | - | tig0028351:8103-8122 | Msa1437640:CDS | 35.0% |
| GAATAATCAGAATCAGGATG+AGG | - | tig0028351:8297-8316 | Msa1437640:CDS | 35.0% | |
| TCTATCATATCCCATAGGAA+AGG | + | tig0028351:8403-8422 | None:intergenic | 35.0% | |
| TTGCATCTATCATATCCCAT+AGG | + | tig0028351:8408-8427 | None:intergenic | 35.0% | |
| TAAACCTGTTAGATCTTCTG+AGG | - | tig0028351:8453-8472 | Msa1437640:intron | 35.0% | |
| AAACCTGTTAGATCTTCTGA+GGG | - | tig0028351:8454-8473 | Msa1437640:intron | 35.0% | |
| AGAAGTTGCGGCTTATATAT+TGG | - | tig0028351:8643-8662 | Msa1437640:intron | 35.0% | |
| GAGTAATGATGGTAATTGTG+AGG | - | tig0028351:8835-8854 | Msa1437640:intron | 35.0% | |
| GATGGTAATTGTGAGGATAT+TGG | - | tig0028351:8842-8861 | Msa1437640:intron | 35.0% | |
| CAGTGTGCTTGATATAAGAA+TGG | - | tig0028351:8901-8920 | Msa1437640:intron | 35.0% | |
| AAATGGTGACTTACTTTCTC+AGG | + | tig0028351:9019-9038 | None:intergenic | 35.0% | |
| AATGACAAAAGATAAGCGAC+TGG | + | tig0028351:9316-9335 | None:intergenic | 35.0% | |
| TCAACAACATTGTGGAAATG+CGG | + | tig0028351:10035-10054 | None:intergenic | 35.0% | |
| TCCACAATGTTGTTGAAGAA+AGG | - | tig0028351:10039-10058 | Msa1437640:five_prime_UTR | 35.0% | |
| CCACAATGTTGTTGAAGAAA+GGG | - | tig0028351:10040-10059 | Msa1437640:five_prime_UTR | 35.0% | |
| CACAATGTTGTTGAAGAAAG+GGG | - | tig0028351:10041-10060 | Msa1437640:five_prime_UTR | 35.0% | |
| GAAGAAAACCAGTCCATATT+TGG | - | tig0028351:10308-10327 | Msa1437640:five_prime_UTR | 35.0% | |
| AAAACCAGTCCATATTTGGA+TGG | - | tig0028351:10312-10331 | Msa1437640:five_prime_UTR | 35.0% | |
| ! | TCCATATTTGGATGGACTTA+AGG | - | tig0028351:10320-10339 | Msa1437640:five_prime_UTR | 35.0% |
| ACCTTAAGTCCATCCAAATA+TGG | + | tig0028351:10324-10343 | None:intergenic | 35.0% | |
| GTTGTTGTATAAGAAGGTGA+TGG | - | tig0028351:10342-10361 | Msa1437640:five_prime_UTR | 35.0% | |
| ! | TATAAGAAGGTGATGGTAAG+AGG | - | tig0028351:10349-10368 | Msa1437640:five_prime_UTR | 35.0% |
| TGTTCTAATCAGGGACATAT+AGG | - | tig0028351:10372-10391 | Msa1437640:five_prime_UTR | 35.0% | |
| TCCCGAAAAACAATATAAGG+AGG | + | tig0028351:10433-10452 | None:intergenic | 35.0% | |
| TACGGTGACGTATATCAGAA+TGG | + | tig0028351:7745-7764 | None:intergenic | 40.0% | |
| AATGCGGTGATGAAAGAGTA+CGG | - | tig0028351:7902-7921 | Msa1437640:exon | 40.0% | |
| ! | AAAGAGTACGGTGTAACTAC+TGG | - | tig0028351:7914-7933 | Msa1437640:CDS | 40.0% |
| ATTGTTGTGAGGACAATGTG+TGG | - | tig0028351:7980-7999 | Msa1437640:CDS | 40.0% | |
| TTGTTGTGAGGACAATGTGT+GGG | - | tig0028351:7981-8000 | Msa1437640:CDS | 40.0% | |
| AGTTTCAGATTGATCGGCAT+AGG | - | tig0028351:8014-8033 | Msa1437640:CDS | 40.0% | |
| ATAGGAACGTTGCACATCTT+AGG | - | tig0028351:8032-8051 | Msa1437640:CDS | 40.0% | |
| ! | GCGAAAAGCTTGATGATAAG+AGG | - | tig0028351:8125-8144 | Msa1437640:CDS | 40.0% |
| GAATCAGGATGAGGTTGTTA+AGG | - | tig0028351:8306-8325 | Msa1437640:intron | 40.0% | |
| AAGGTTATAGAACAACCCTC+TGG | - | tig0028351:8325-8344 | Msa1437640:intron | 40.0% | |
| ATCCTAGGGTTCACGAAAAT+CGG | + | tig0028351:8370-8389 | None:intergenic | 40.0% | |
| CATGCAAGATTTCAAAGGTG+TGG | - | tig0028351:8495-8514 | Msa1437640:intron | 40.0% | |
| AATTGATGAGGAACCAATGG+CGG | - | tig0028351:8540-8559 | Msa1437640:intron | 40.0% | |
| ATATTGGATCATCCAAAGGC+TGG | - | tig0028351:8659-8678 | Msa1437640:intron | 40.0% | |
| ! | GAAGCGTTTAATTACCCTGA+TGG | - | tig0028351:8755-8774 | Msa1437640:intron | 40.0% |
| CGTTTAATTACCCTGATGGT+GGG | - | tig0028351:8759-8778 | Msa1437640:intron | 40.0% | |
| ! | GTTTAATTACCCTGATGGTG+GGG | - | tig0028351:8760-8779 | Msa1437640:intron | 40.0% |
| ! | CTCTTTGAGGATGGATCATA+AGG | - | tig0028351:8790-8809 | Msa1437640:intron | 40.0% |
| TTTGAGGATGGATCATAAGG+TGG | - | tig0028351:8793-8812 | Msa1437640:intron | 40.0% | |
| TTGAGGATGGATCATAAGGT+GGG | - | tig0028351:8794-8813 | Msa1437640:intron | 40.0% | |
| AATTGTGAGGATATTGGACC+TGG | - | tig0028351:8848-8867 | Msa1437640:intron | 40.0% | |
| TAAGAATGGCGAATGCAGAT+AGG | - | tig0028351:8915-8934 | Msa1437640:intron | 40.0% | |
| !! | GCACATTTGATTGGCTTTAC+TGG | - | tig0028351:9884-9903 | Msa1437640:five_prime_UTR | 40.0% |
| ATACTCTCTGGATGCTGAAA+AGG | - | tig0028351:9951-9970 | Msa1437640:five_prime_UTR | 40.0% | |
| CCCTTTCTTCAACAACATTG+TGG | + | tig0028351:10043-10062 | None:intergenic | 40.0% | |
| GAACAAAGAATCAGTGATCG+AGG | - | tig0028351:10119-10138 | Msa1437640:five_prime_UTR | 40.0% | |
| CGAATTTGTATCGCAGATCA+TGG | - | tig0028351:10199-10218 | Msa1437640:five_prime_UTR | 40.0% | |
| AAGTCCATCCAAATATGGAC+TGG | + | tig0028351:10319-10338 | None:intergenic | 40.0% | |
| !! | TGGTAAGAGGTGTTCTAATC+AGG | - | tig0028351:10362-10381 | Msa1437640:five_prime_UTR | 40.0% |
| !! | GGTAAGAGGTGTTCTAATCA+GGG | - | tig0028351:10363-10382 | Msa1437640:five_prime_UTR | 40.0% |
| TGGATTCGCTTGAACAACGA+CGG | + | tig0028351:7725-7744 | None:intergenic | 45.0% | |
| AGTAACACCAATGCGTGTGT+TGG | - | tig0028351:7775-7794 | Msa1437640:three_prime_UTR | 45.0% | |
| TCAGATTCCAACACACGCAT+TGG | + | tig0028351:7785-7804 | None:intergenic | 45.0% | |
| !! | AACCGATTTTCGTGAACCCT+AGG | - | tig0028351:8365-8384 | Msa1437640:intron | 45.0% |
| GTTCCCTCAGAAGATCTAAC+AGG | + | tig0028351:8460-8479 | None:intergenic | 45.0% | |
| ! | GTTAGATCTTCTGAGGGAAC+AGG | - | tig0028351:8460-8479 | Msa1437640:intron | 45.0% |
| GCCAATTGATGAGGAACCAA+TGG | - | tig0028351:8537-8556 | Msa1437640:intron | 45.0% | |
| !! | GCCATTGGTTCCTCATCAAT+TGG | + | tig0028351:8541-8560 | None:intergenic | 45.0% |
| AATGGTGAGGGATTGAAGAG+AGG | - | tig0028351:8593-8612 | Msa1437640:intron | 45.0% | |
| ATGGTGAGGGATTGAAGAGA+GGG | - | tig0028351:8594-8613 | Msa1437640:intron | 45.0% | |
| TTGAAGAGAGGGACAAAGGT+TGG | - | tig0028351:8605-8624 | Msa1437640:intron | 45.0% | |
| !! | TTTTTGCTGTGTTCCGCCTA+CGG | - | tig0028351:8712-8731 | Msa1437640:intron | 45.0% |
| GCGTTTAATTACCCTGATGG+TGG | - | tig0028351:8758-8777 | Msa1437640:intron | 45.0% | |
| TGAGGATGGATCATAAGGTG+GGG | - | tig0028351:8795-8814 | Msa1437640:intron | 45.0% | |
| ATCTTATGCACCTCTTGCAC+AGG | + | tig0028351:8881-8900 | None:intergenic | 45.0% | |
| CTGCTCATTCCCATTGATCA+TGG | - | tig0028351:8983-9002 | Msa1437640:intron | 45.0% | |
| ACTGACATCTGCATCTCAGT+TGG | + | tig0028351:9534-9553 | None:intergenic | 45.0% | |
| CTTCAGCAACTTCGTATGCA+TGG | + | tig0028351:9743-9762 | None:intergenic | 45.0% | |
| CATGCATACGAAGTTGCTGA+AGG | - | tig0028351:9741-9760 | Msa1437640:five_prime_UTR | 45.0% | |
| TCAACTGTATCGGGAGAGTA+TGG | + | tig0028351:9925-9944 | None:intergenic | 45.0% | |
| AGTGTTCTAGCACTCTCAAC+TGG | + | tig0028351:10012-10031 | None:intergenic | 45.0% | |
| TTGAAGAAAGGGGTTGAGAG+AGG | - | tig0028351:10051-10070 | Msa1437640:five_prime_UTR | 45.0% | |
| ATGATGCTTCCAACGGCATA+GGG | + | tig0028351:10084-10103 | None:intergenic | 45.0% | |
| CCTACACATGATGCTTCCAA+CGG | + | tig0028351:10091-10110 | None:intergenic | 45.0% | |
| !! | CGTTGGAAGCATCATGTGTA+GGG | - | tig0028351:10089-10108 | Msa1437640:five_prime_UTR | 45.0% |
| GCCTGGTAGCAATGATTTCT+GGG | + | tig0028351:10160-10179 | None:intergenic | 45.0% | |
| TGCCTGGTAGCAATGATTTC+TGG | + | tig0028351:10161-10180 | None:intergenic | 45.0% | |
| AAAATCAGATTCCTCGTGCC+TGG | + | tig0028351:10177-10196 | None:intergenic | 45.0% | |
| TCTATTTCGACAGCTCACCA+AGG | + | tig0028351:10232-10251 | None:intergenic | 45.0% | |
| GATATACGTCACCGTAGACG+AGG | - | tig0028351:7749-7768 | Msa1437640:three_prime_UTR | 50.0% | |
| ! | GTGTTACTGCTCCTCGTCTA+CGG | + | tig0028351:7763-7782 | None:intergenic | 50.0% |
| TGTGAGGACAATGTGTGGGA+AGG | - | tig0028351:7985-8004 | Msa1437640:CDS | 50.0% | |
| ! | AGATCTTCTGAGGGAACAGG+TGG | - | tig0028351:8463-8482 | Msa1437640:intron | 50.0% |
| ! | GATCTTCTGAGGGAACAGGT+GGG | - | tig0028351:8464-8483 | Msa1437640:intron | 50.0% |
| GCGGGATTATTAACCGCCAT+TGG | + | tig0028351:8556-8575 | None:intergenic | 50.0% | |
| TCCCTCACCATTCACCGAAA+CGG | + | tig0028351:8585-8604 | None:intergenic | 50.0% | |
| GGGATTGAAGAGAGGGACAA+AGG | - | tig0028351:8601-8620 | Msa1437640:intron | 50.0% | |
| AGAGGGACAAAGGTTGGAGA+AGG | - | tig0028351:8611-8630 | Msa1437640:intron | 50.0% | |
| AGGAGCTGTGAGAGAAGTTG+CGG | - | tig0028351:8631-8650 | Msa1437640:intron | 50.0% | |
| ! | TTGGTGTCTGGTGAAGCGAT+TGG | - | tig0028351:8689-8708 | Msa1437640:intron | 50.0% |
| AAACACCGCACCATAACCGT+AGG | + | tig0028351:8731-8750 | None:intergenic | 50.0% | |
| ! | GGATTGTGGCTCTTTGAGGA+TGG | - | tig0028351:8781-8800 | Msa1437640:intron | 50.0% |
| !! | TCTTGCACAGGAAAAGCACC+AGG | + | tig0028351:8869-8888 | None:intergenic | 50.0% |
| ! | TGGTGCTTTTCCTGTGCAAG+AGG | - | tig0028351:8868-8887 | Msa1437640:intron | 50.0% |
| CGAATGCAGATAGGCATGCA+GGG | - | tig0028351:8924-8943 | Msa1437640:intron | 50.0% | |
| GCATACGAAGTTGCTGAAGG+TGG | - | tig0028351:9744-9763 | Msa1437640:five_prime_UTR | 50.0% | |
| CATGATGCTTCCAACGGCAT+AGG | + | tig0028351:10085-10104 | None:intergenic | 50.0% | |
| !! | CCGTTGGAAGCATCATGTGT+AGG | - | tig0028351:10088-10107 | Msa1437640:five_prime_UTR | 50.0% |
| GCCCAGAAATCATTGCTACC+AGG | - | tig0028351:10156-10175 | Msa1437640:five_prime_UTR | 50.0% | |
| AATCATTGCTACCAGGCACG+AGG | - | tig0028351:10163-10182 | Msa1437640:five_prime_UTR | 50.0% | |
| ATTTCGACAGCTCACCAAGG+CGG | + | tig0028351:10229-10248 | None:intergenic | 50.0% | |
| ! | AATCCCGCGTGATGCCGTTT+CGG | - | tig0028351:8568-8587 | Msa1437640:intron | 55.0% |
| TTCACCGAAACGGCATCACG+CGG | + | tig0028351:8575-8594 | None:intergenic | 55.0% | |
| ! | CGTGATGCCGTTTCGGTGAA+TGG | - | tig0028351:8575-8594 | Msa1437640:intron | 55.0% |
| ! | TGCCGTTTCGGTGAATGGTG+AGG | - | tig0028351:8580-8599 | Msa1437640:intron | 55.0% |
| GCCGTTTCGGTGAATGGTGA+GGG | - | tig0028351:8581-8600 | Msa1437640:intron | 55.0% | |
| GCTTCACCAGACACCAAACG+CGG | + | tig0028351:8686-8705 | None:intergenic | 55.0% | |
| CTGTGTTCCGCCTACGGTTA+TGG | - | tig0028351:8718-8737 | Msa1437640:intron | 55.0% | |
| TTCCGCCTACGGTTATGGTG+CGG | - | tig0028351:8723-8742 | Msa1437640:intron | 55.0% | |
| !! | TACCCTGATGGTGGGGATTG+TGG | - | tig0028351:8767-8786 | Msa1437640:intron | 55.0% |
| AGCCACAATCCCCACCATCA+GGG | + | tig0028351:8772-8791 | None:intergenic | 55.0% | |
| GTGGGGATTGTGGCTCTTTG+AGG | - | tig0028351:8777-8796 | Msa1437640:intron | 55.0% | |
| GCGAATGCAGATAGGCATGC+AGG | - | tig0028351:8923-8942 | Msa1437640:intron | 55.0% | |
| GAGTATGGCTGACGTGCTTG+AGG | + | tig0028351:9910-9929 | None:intergenic | 55.0% | |
| CAGATCATGGATTCCCGCCT+TGG | - | tig0028351:10212-10231 | Msa1437640:five_prime_UTR | 55.0% | |
| TTTCGACAGCTCACCAAGGC+GGG | + | tig0028351:10228-10247 | None:intergenic | 55.0% | |
| TCACCGAAACGGCATCACGC+GGG | + | tig0028351:8574-8593 | None:intergenic | 60.0% | |
| TCCAAAGGCTGGACCGCGTT+TGG | - | tig0028351:8670-8689 | Msa1437640:intron | 60.0% | |
| ACCAAACGCGGTCCAGCCTT+TGG | + | tig0028351:8674-8693 | None:intergenic | 60.0% | |
| CACCGCACCATAACCGTAGG+CGG | + | tig0028351:8728-8747 | None:intergenic | 60.0% | |
| GAGCCACAATCCCCACCATC+AGG | + | tig0028351:8773-8792 | None:intergenic | 60.0% | |
| GGTCTCACTCCCTATGCCGT+TGG | - | tig0028351:10072-10091 | Msa1437640:five_prime_UTR | 60.0% | |
| !! | GCTGGACCGCGTTTGGTGTC+TGG | - | tig0028351:8677-8696 | Msa1437640:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028351 | gene | 7714 | 10476 | 7714 | ID=Msa1437640;Name=Msa1437640 |
| tig0028351 | mRNA | 7714 | 10476 | 7714 | ID=Msa1437640-mRNA-1;Parent=Msa1437640;Name=Msa1437640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=807|1|1|1|1|1|2|198|302 |
| tig0028351 | exon | 7714 | 8316 | 7714 | ID=Msa1437640-mRNA-1:exon:10846;Parent=Msa1437640-mRNA-1 |
| tig0028351 | exon | 9166 | 10476 | 9166 | ID=Msa1437640-mRNA-1:exon:10845;Parent=Msa1437640-mRNA-1 |
| tig0028351 | five_prime_UTR | 9670 | 10476 | 9670 | ID=Msa1437640-mRNA-1:five_prime_utr;Parent=Msa1437640-mRNA-1 |
| tig0028351 | CDS | 9166 | 9669 | 9166 | ID=Msa1437640-mRNA-1:cds;Parent=Msa1437640-mRNA-1 |
| tig0028351 | CDS | 7912 | 8316 | 7912 | ID=Msa1437640-mRNA-1:cds;Parent=Msa1437640-mRNA-1 |
| tig0028351 | three_prime_UTR | 7714 | 7911 | 7714 | ID=Msa1437640-mRNA-1:three_prime_utr;Parent=Msa1437640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
