Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830130 | XP_003610975.2 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830130 | sp|Q9SGW8|P4KG2_ARATH | 57.119 | 590 | 205 | 6 | 1 | 582 | 1 | 550 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830130 | G7K9A8 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0830130 | 0.833080 | 6.550108e-56 | -8.615850e-47 |
| Msa0028420 | Msa0830130 | 0.801706 | 7.934757e-49 | -8.615850e-47 |
| Msa0030370 | Msa0830130 | 0.813013 | 3.172863e-51 | -8.615850e-47 |
| Msa0049760 | Msa0830130 | 0.800290 | 1.544747e-48 | -8.615850e-47 |
| Msa0052480 | Msa0830130 | 0.819575 | 1.080917e-52 | -8.615850e-47 |
| Msa0054690 | Msa0830130 | 0.829767 | 4.281309e-55 | -8.615850e-47 |
| Msa0067330 | Msa0830130 | 0.814567 | 1.442790e-51 | -8.615850e-47 |
| Msa0081570 | Msa0830130 | 0.804505 | 2.092144e-49 | -8.615850e-47 |
| Msa0090400 | Msa0830130 | 0.816944 | 4.259270e-52 | -8.615850e-47 |
| Msa0094780 | Msa0830130 | 0.825507 | 4.515156e-54 | -8.615850e-47 |
| Msa0626450 | Msa0830130 | 0.818130 | 2.301601e-52 | -8.615850e-47 |
| Msa0626490 | Msa0830130 | 0.815628 | 8.385985e-52 | -8.615850e-47 |
| Msa0644410 | Msa0830130 | 0.815345 | 9.696180e-52 | -8.615850e-47 |
| Msa0658640 | Msa0830130 | 0.847725 | 9.642093e-60 | -8.615850e-47 |
| Msa0661150 | Msa0830130 | 0.818039 | 2.413299e-52 | -8.615850e-47 |
| Msa0664150 | Msa0830130 | 0.800723 | 1.261010e-48 | -8.615850e-47 |
| Msa0664600 | Msa0830130 | 0.815147 | 1.072861e-51 | -8.615850e-47 |
| Msa0666700 | Msa0830130 | 0.814261 | 1.685736e-51 | -8.615850e-47 |
| Msa0683570 | Msa0830130 | 0.817001 | 4.135610e-52 | -8.615850e-47 |
| Msa0702810 | Msa0830130 | 0.809375 | 1.952098e-50 | -8.615850e-47 |
| Msa0703600 | Msa0830130 | 0.836875 | 7.240326e-57 | -8.615850e-47 |
| Msa0709200 | Msa0830130 | 0.838387 | 2.963827e-57 | -8.615850e-47 |
| Msa0709440 | Msa0830130 | 0.807257 | 5.520527e-50 | -8.615850e-47 |
| Msa0712110 | Msa0830130 | 0.826915 | 2.087506e-54 | -8.615850e-47 |
| Msa0721080 | Msa0830130 | 0.812821 | 3.495153e-51 | -8.615850e-47 |
| Msa0735780 | Msa0830130 | 0.824246 | 8.957875e-54 | -8.615850e-47 |
| Msa0749890 | Msa0830130 | 0.957616 | 1.762205e-115 | -8.615850e-47 |
| Msa0755760 | Msa0830130 | 0.805802 | 1.119362e-49 | -8.615850e-47 |
| Msa0756590 | Msa0830130 | 0.829355 | 5.392984e-55 | -8.615850e-47 |
| Msa0773630 | Msa0830130 | 0.811683 | 6.192241e-51 | -8.615850e-47 |
| Msa0777750 | Msa0830130 | 0.804612 | 1.986691e-49 | -8.615850e-47 |
| Msa0783530 | Msa0830130 | 0.803917 | 2.773033e-49 | -8.615850e-47 |
| Msa0795870 | Msa0830130 | 0.833736 | 4.493719e-56 | -8.615850e-47 |
| Msa0815920 | Msa0830130 | 0.802762 | 4.810850e-49 | -8.615850e-47 |
| Msa0824450 | Msa0830130 | 0.828191 | 1.031446e-54 | -8.615850e-47 |
| Msa0828970 | Msa0830130 | 0.813243 | 2.825094e-51 | -8.615850e-47 |
| Msa0830130 | Msa0830460 | 0.985696 | 2.248611e-164 | -8.615850e-47 |
| Msa0830130 | Msa0833650 | 0.844044 | 9.645011e-59 | -8.615850e-47 |
| Msa0830130 | Msa0835900 | 0.807314 | 5.369232e-50 | -8.615850e-47 |
| Msa0830130 | Msa0836150 | 0.800155 | 1.645375e-48 | -8.615850e-47 |
| Msa0830130 | Msa0842070 | 0.813268 | 2.788970e-51 | -8.615850e-47 |
| Msa0830130 | Msa0863620 | 0.810954 | 8.915758e-51 | -8.615850e-47 |
| Msa0830130 | Msa0945110 | 0.804130 | 2.503980e-49 | -8.615850e-47 |
| Msa0830130 | Msa0997920 | 0.853296 | 2.624584e-61 | -8.615850e-47 |
| Msa0830130 | Msa1037540 | 0.802107 | 6.561760e-49 | -8.615850e-47 |
| Msa0830130 | Msa1042160 | 0.822235 | 2.639932e-53 | -8.615850e-47 |
| Msa0830130 | Msa1042190 | 0.822895 | 1.854773e-53 | -8.615850e-47 |
| Msa0830130 | Msa1044470 | 0.800929 | 1.144210e-48 | -8.615850e-47 |
| Msa0830130 | Msa1080000 | 0.804830 | 1.789433e-49 | -8.615850e-47 |
| Msa0830130 | Msa1084530 | 0.801527 | 8.634133e-49 | -8.615850e-47 |
| Msa0830130 | Msa1123210 | 0.810122 | 1.348597e-50 | -8.615850e-47 |
| Msa0830130 | Msa1125820 | 0.805697 | 1.178114e-49 | -8.615850e-47 |
| Msa0830130 | Msa1125990 | 0.810243 | 1.270036e-50 | -8.615850e-47 |
| Msa0830130 | Msa1132530 | 0.808377 | 3.191675e-50 | -8.615850e-47 |
| Msa0830130 | Msa1132840 | 0.840992 | 6.224925e-58 | -8.615850e-47 |
| Msa0830130 | Msa1160920 | 0.802805 | 4.711848e-49 | -8.615850e-47 |
| Msa0830130 | Msa1167470 | 0.818444 | 1.954185e-52 | -8.615850e-47 |
| Msa0830130 | Msa1171290 | 0.802836 | 4.643577e-49 | -8.615850e-47 |
| Msa0830130 | Msa1186020 | 0.807542 | 4.803089e-50 | -8.615850e-47 |
| Msa0830130 | Msa1192570 | 0.834323 | 3.204046e-56 | -8.615850e-47 |
| Msa0830130 | Msa1208950 | 0.807974 | 3.889737e-50 | -8.615850e-47 |
| Msa0830130 | Msa1215870 | 0.816269 | 6.032010e-52 | -8.615850e-47 |
| Msa0830130 | Msa1224930 | 0.821169 | 4.658655e-53 | -8.615850e-47 |
| Msa0830130 | Msa1226520 | 0.846966 | 1.557906e-59 | -8.615850e-47 |
| Msa0830130 | Msa1292590 | 0.821999 | 2.994080e-53 | -8.615850e-47 |
| Msa0830130 | Msa1307630 | 0.845913 | 3.018387e-59 | -8.615850e-47 |
| Msa0830130 | Msa1320670 | 0.806870 | 6.667466e-50 | -8.615850e-47 |
| Msa0830130 | Msa1321340 | 0.805779 | 1.132208e-49 | -8.615850e-47 |
| Msa0830130 | Msa1343170 | 0.806081 | 9.783100e-50 | -8.615850e-47 |
| Msa0830130 | Msa1343180 | 0.801341 | 9.424844e-49 | -8.615850e-47 |
| Msa0830130 | Msa1359690 | 0.832423 | 9.532832e-56 | -8.615850e-47 |
| Msa0830130 | Msa1392580 | 0.812971 | 3.240773e-51 | -8.615850e-47 |
| Msa0830130 | Msa1395190 | 0.835361 | 1.754537e-56 | -8.615850e-47 |
| Msa0830130 | Msa1397400 | 0.841926 | 3.532641e-58 | -8.615850e-47 |
| Msa0830130 | Msa1420950 | 0.828602 | 8.207212e-55 | -8.615850e-47 |
| Msa0830130 | Msa1437640 | 0.935827 | 4.589802e-97 | -8.615850e-47 |
| Msa0830130 | Msa1437930 | 0.808879 | 2.492588e-50 | -8.615850e-47 |
| Msa0830130 | Msa1440960 | 0.810606 | 1.060487e-50 | -8.615850e-47 |
| Msa0830130 | Msa1446810 | 0.810084 | 1.374395e-50 | -8.615850e-47 |
| Msa0136650 | Msa0830130 | 0.822123 | 2.803408e-53 | -8.615850e-47 |
| Msa0137880 | Msa0830130 | 0.826279 | 2.959507e-54 | -8.615850e-47 |
| Msa0140280 | Msa0830130 | 0.842022 | 3.331658e-58 | -8.615850e-47 |
| Msa0158860 | Msa0830130 | 0.818189 | 2.232040e-52 | -8.615850e-47 |
| Msa0173730 | Msa0830130 | 0.816721 | 4.779103e-52 | -8.615850e-47 |
| Msa0173810 | Msa0830130 | 0.805119 | 1.557183e-49 | -8.615850e-47 |
| Msa0174450 | Msa0830130 | 0.813619 | 2.335879e-51 | -8.615850e-47 |
| Msa0182190 | Msa0830130 | 0.825964 | 3.517156e-54 | -8.615850e-47 |
| Msa0182240 | Msa0830130 | 0.830864 | 2.309829e-55 | -8.615850e-47 |
| Msa0190570 | Msa0830130 | 0.808496 | 3.010184e-50 | -8.615850e-47 |
| Msa0200050 | Msa0830130 | 0.817387 | 3.385716e-52 | -8.615850e-47 |
| Msa0213030 | Msa0830130 | 0.802013 | 6.862982e-49 | -8.615850e-47 |
| Msa0225860 | Msa0830130 | 0.846162 | 2.582841e-59 | -8.615850e-47 |
| Msa0369790 | Msa0830130 | 0.811415 | 7.082744e-51 | -8.615850e-47 |
| Msa0380620 | Msa0830130 | 0.819449 | 1.154410e-52 | -8.615850e-47 |
| Msa0380670 | Msa0830130 | 0.819327 | 1.231386e-52 | -8.615850e-47 |
| Msa0419540 | Msa0830130 | 0.803612 | 3.207681e-49 | -8.615850e-47 |
| Msa0428370 | Msa0830130 | 0.806884 | 6.622790e-50 | -8.615850e-47 |
| Msa0430260 | Msa0830130 | 0.816225 | 6.171698e-52 | -8.615850e-47 |
| Msa0430300 | Msa0830130 | 0.834789 | 2.445980e-56 | -8.615850e-47 |
| Msa0464000 | Msa0830130 | 0.810656 | 1.033982e-50 | -8.615850e-47 |
| Msa0465530 | Msa0830130 | 0.809591 | 1.754378e-50 | -8.615850e-47 |
| Msa0472950 | Msa0830130 | 0.819591 | 1.071838e-52 | -8.615850e-47 |
| Msa0474730 | Msa0830130 | 0.807455 | 5.012147e-50 | -8.615850e-47 |
| Msa0481890 | Msa0830130 | 0.802918 | 4.467010e-49 | -8.615850e-47 |
| Msa0242590 | Msa0830130 | 0.823970 | 1.039810e-53 | -8.615850e-47 |
| Msa0258060 | Msa0830130 | 0.803043 | 4.208194e-49 | -8.615850e-47 |
| Msa0260510 | Msa0830130 | 0.831974 | 1.231068e-55 | -8.615850e-47 |
| Msa0267110 | Msa0830130 | 0.827674 | 1.372855e-54 | -8.615850e-47 |
| Msa0280790 | Msa0830130 | 0.804708 | 1.897747e-49 | -8.615850e-47 |
| Msa0298470 | Msa0830130 | 0.849952 | 2.324024e-60 | -8.615850e-47 |
| Msa0298500 | Msa0830130 | 0.801979 | 6.973962e-49 | -8.615850e-47 |
| Msa0320660 | Msa0830130 | 0.805749 | 1.148675e-49 | -8.615850e-47 |
| Msa0330380 | Msa0830130 | 0.825572 | 4.357129e-54 | -8.615850e-47 |
| Msa0340500 | Msa0830130 | 0.848747 | 5.032927e-60 | -8.615850e-47 |
| Msa0483100 | Msa0830130 | 0.803637 | 3.170686e-49 | -8.615850e-47 |
| Msa0509550 | Msa0830130 | 0.806590 | 7.640148e-50 | -8.615850e-47 |
| Msa0528570 | Msa0830130 | 0.804734 | 1.873933e-49 | -8.615850e-47 |
| Msa0530780 | Msa0830130 | 0.801333 | 9.460411e-49 | -8.615850e-47 |
| Msa0548470 | Msa0830130 | 0.804613 | 1.985894e-49 | -8.615850e-47 |
| Msa0567170 | Msa0830130 | 0.839933 | 1.177578e-57 | -8.615850e-47 |
| Msa0580370 | Msa0830130 | 0.840247 | 9.755665e-58 | -8.615850e-47 |
| Msa0597270 | Msa0830130 | 0.803458 | 3.453323e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830130 | MtrunA17_Chr5g0396531 | 97.595 | 582 | 14 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1174 |
| Msa0830130 | MtrunA17_Chr8g0388301 | 67.454 | 593 | 160 | 6 | 18 | 582 | 6 | 593 | 0.0 | 814 |
| Msa0830130 | MtrunA17_Chr8g0346901 | 55.281 | 606 | 231 | 12 | 1 | 581 | 1 | 591 | 0.0 | 663 |
| Msa0830130 | MtrunA17_Chr3g0126781 | 56.261 | 583 | 238 | 9 | 3 | 577 | 1 | 574 | 0.0 | 641 |
| Msa0830130 | MtrunA17_Chr7g0275661 | 55.826 | 575 | 224 | 11 | 23 | 580 | 29 | 590 | 0.0 | 624 |
| Msa0830130 | MtrunA17_Chr8g0366091 | 32.237 | 456 | 250 | 11 | 109 | 556 | 43 | 447 | 1.06e-63 | 220 |
| Msa0830130 | MtrunA17_Chr5g0420771 | 40.317 | 315 | 163 | 7 | 254 | 556 | 152 | 453 | 2.41e-62 | 217 |
| Msa0830130 | MtrunA17_Chr7g0220391 | 38.110 | 328 | 175 | 7 | 261 | 577 | 155 | 465 | 1.90e-59 | 209 |
| Msa0830130 | MtrunA17_Chr7g0255481 | 38.542 | 288 | 145 | 7 | 261 | 537 | 99 | 365 | 3.04e-58 | 201 |
| Msa0830130 | MtrunA17_Chr7g0274921 | 25.325 | 154 | 109 | 3 | 30 | 182 | 2 | 150 | 3.01e-11 | 63.5 |
| Msa0830130 | MtrunA17_Chr7g0274921 | 24.405 | 168 | 121 | 3 | 16 | 182 | 64 | 226 | 4.95e-11 | 63.2 |
| Msa0830130 | MtrunA17_Chr4g0041751 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 3.73e-11 | 63.5 |
| Msa0830130 | MtrunA17_Chr1g0181441 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 4.03e-11 | 63.5 |
| Msa0830130 | MtrunA17_Chr1g0181441 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 6.43e-11 | 62.8 |
| Msa0830130 | MtrunA17_Chr6g0475961 | 25.166 | 151 | 107 | 3 | 33 | 182 | 6 | 151 | 4.36e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830130 | AT2G46500.1 | 55.422 | 581 | 234 | 6 | 1 | 577 | 1 | 560 | 0.0 | 652 |
| Msa0830130 | AT2G46500.2 | 55.422 | 581 | 234 | 6 | 1 | 577 | 1 | 560 | 0.0 | 652 |
| Msa0830130 | AT5G24240.1 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 612 |
| Msa0830130 | AT5G24240.2 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 612 |
| Msa0830130 | AT2G46500.3 | 50.000 | 418 | 184 | 6 | 1 | 414 | 1 | 397 | 4.81e-133 | 395 |
| Msa0830130 | AT2G03890.1 | 38.788 | 330 | 178 | 6 | 238 | 556 | 139 | 455 | 8.96e-64 | 221 |
| Msa0830130 | AT1G13640.1 | 41.522 | 289 | 144 | 5 | 261 | 537 | 154 | 429 | 7.18e-63 | 218 |
| Msa0830130 | AT1G13640.2 | 41.522 | 289 | 144 | 5 | 261 | 537 | 154 | 429 | 7.18e-63 | 218 |
| Msa0830130 | AT1G26270.1 | 40.604 | 298 | 156 | 5 | 248 | 537 | 145 | 429 | 9.90e-63 | 218 |
| Msa0830130 | AT2G40850.1 | 37.647 | 340 | 180 | 9 | 243 | 565 | 94 | 418 | 2.40e-62 | 215 |
| Msa0830130 | AT3G56600.2 | 38.125 | 320 | 167 | 6 | 249 | 555 | 85 | 386 | 2.10e-61 | 212 |
| Msa0830130 | AT3G56600.1 | 38.125 | 320 | 167 | 6 | 249 | 555 | 88 | 389 | 2.38e-61 | 212 |
| Msa0830130 | AT3G56600.3 | 38.125 | 320 | 167 | 6 | 249 | 555 | 88 | 389 | 2.38e-61 | 212 |
| Msa0830130 | AT2G03890.2 | 40.161 | 249 | 127 | 4 | 318 | 556 | 99 | 335 | 1.11e-48 | 177 |
| Msa0830130 | AT1G27570.1 | 30.224 | 268 | 150 | 9 | 328 | 580 | 396 | 641 | 6.65e-25 | 109 |
| Msa0830130 | AT1G27570.2 | 30.224 | 268 | 150 | 9 | 328 | 580 | 387 | 632 | 6.71e-25 | 109 |
| Msa0830130 | AT4G05320.7 | 24.490 | 147 | 106 | 2 | 36 | 182 | 7 | 148 | 1.32e-11 | 63.5 |
| Msa0830130 | AT4G05050.4 | 24.490 | 147 | 106 | 2 | 36 | 182 | 7 | 148 | 1.32e-11 | 63.5 |
| Msa0830130 | AT3G43950.1 | 33.803 | 142 | 77 | 5 | 331 | 468 | 78 | 206 | 1.69e-11 | 64.7 |
| Msa0830130 | AT2G35635.1 | 26.712 | 146 | 102 | 3 | 36 | 181 | 7 | 147 | 3.11e-11 | 62.4 |
| Msa0830130 | AT4G02890.2 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830130 | AT4G02890.2 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830130 | AT4G02890.1 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830130 | AT4G02890.1 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830130 | AT4G05050.2 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830130 | AT4G05050.2 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830130 | AT4G05050.1 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830130 | AT4G05050.1 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
| Msa0830130 | AT4G05050.3 | 24.405 | 168 | 121 | 3 | 16 | 182 | 62 | 224 | 6.21e-11 | 63.2 |
| Msa0830130 | AT4G05050.3 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 9.38e-11 | 62.8 |
Find 147 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTGGTAGCAATGATTTC+TGG | 0.116857 | 5_4:-3202433 | None:intergenic |
| GAAGAAAACCAGTCCATATT+TGG | 0.218354 | 5_4:+3202584 | Msa0830130:three_prime_UTR |
| GCACATTTGATTGGCTTTAC+TGG | 0.236333 | 5_4:+3202159 | Msa0830130:CDS |
| ATAGAGCTTCTGAAATATTA+TGG | 0.291106 | 5_4:+3202251 | Msa0830130:CDS |
| TAATAATCCGCGTGGATTGC+CGG | 0.312705 | 5_4:+3200843 | Msa0830130:CDS |
| AGAAGTTGCGGCTTATATAT+TGG | 0.319276 | 5_4:+3200924 | Msa0830130:CDS |
| TCCATATTTGGATGGACTTA+AGG | 0.329114 | 5_4:+3202596 | Msa0830130:three_prime_UTR |
| TACTGGTAATGTTGTTCATT+TGG | 0.334044 | 5_4:+3200210 | Msa0830130:CDS |
| TGGTAAGAGGTGTTCTAATC+AGG | 0.334243 | 5_4:+3202638 | Msa0830130:three_prime_UTR |
| GCCTGGTAGCAATGATTTCT+GGG | 0.343431 | 5_4:-3202432 | None:intergenic |
| ACCTTAAGTCCATCCAAATA+TGG | 0.345436 | 5_4:-3202597 | None:intergenic |
| ATCCTAGGGTTCACGAAAAT+CGG | 0.363297 | 5_4:-3200646 | None:intergenic |
| TCCGCGTGGATTGCCGGTTT+CGG | 0.363471 | 5_4:+3200849 | Msa0830130:CDS |
| GTGGGGATTGTGGCTCTTTG+AGG | 0.363682 | 5_4:+3201058 | Msa0830130:CDS |
| TGGTGTTCCGCCTACGGTTA+TGG | 0.367323 | 5_4:+3200999 | Msa0830130:CDS |
| TTGAAGATTGCACATTTGAT+TGG | 0.370246 | 5_4:+3202150 | Msa0830130:CDS |
| AAGCAAAATCTAGTTTCTAA+TGG | 0.377281 | 5_4:+3200139 | Msa0830130:CDS |
| ACCAAACGCGGTCCAGCCTT+TGG | 0.378332 | 5_4:-3200952 | None:intergenic |
| CCCTCACCATTCACCGAAAC+CGG | 0.379422 | 5_4:-3200862 | None:intergenic |
| GCCATTGGTTCCTCATCAAT+TGG | 0.383037 | 5_4:-3200817 | None:intergenic |
| CGAATTTGTATCGCAGATCA+TGG | 0.384306 | 5_4:+3202475 | Msa0830130:CDS |
| TCCAAAGGCTGGACCGCGTT+TGG | 0.385239 | 5_4:+3200951 | Msa0830130:CDS |
| GGATTGCCGGTTTCGGTGAA+TGG | 0.392525 | 5_4:+3200856 | Msa0830130:CDS |
| CCACAATGTTGTTGAAGAAA+GGG | 0.392633 | 5_4:+3202315 | Msa0830130:CDS |
| ATGATAGATGCAACTTTCAA+TGG | 0.393750 | 5_4:+3200694 | Msa0830130:CDS |
| GATGGTAATTGTGAGGATAT+TGG | 0.395024 | 5_4:+3201123 | Msa0830130:CDS |
| AAACAATATAAGGAGGTGAT+TGG | 0.396649 | 5_4:-3202699 | None:intergenic |
| TCCACAATGTTGTTGAAGAA+AGG | 0.400392 | 5_4:+3202314 | Msa0830130:CDS |
| TTGAAGAGAGGGACAAAGGT+TGG | 0.402804 | 5_4:+3200886 | Msa0830130:CDS |
| CAGAAGTTTATGAGTAATGA+TGG | 0.410311 | 5_4:+3201105 | Msa0830130:CDS |
| TCAACTGTATCGGGAGAGTA+TGG | 0.410892 | 5_4:-3202197 | None:intergenic |
| GAGCCACAATCCCCACCATC+AGG | 0.414679 | 5_4:-3201051 | None:intergenic |
| GTTCCCTCAGAAGATCTAAC+AGG | 0.417109 | 5_4:-3200736 | None:intergenic |
| TAGGAATTGTATTAAAAGAA+AGG | 0.420136 | 5_4:+3200330 | Msa0830130:CDS |
| GCTGGACCGCGTTTGGTGTC+TGG | 0.423380 | 5_4:+3200958 | Msa0830130:CDS |
| AGGAATTGTATTAAAAGAAA+GGG | 0.424400 | 5_4:+3200331 | Msa0830130:CDS |
| GAATCAGGATGAGGTTGTTA+AGG | 0.426840 | 5_4:+3200585 | Msa0830130:CDS |
| ATAGGAACGTTGCACATCTT+AGG | 0.430624 | 5_4:+3200311 | Msa0830130:CDS |
| AAATGGTGACTTACTTTCTC+AGG | 0.430834 | 5_4:-3201297 | None:intergenic |
| AGTGTTCTAGCACTCTCAAC+TGG | 0.433384 | 5_4:-3202284 | None:intergenic |
| CTTAAGGTTGTTGTATAAGA+AGG | 0.434772 | 5_4:+3202612 | Msa0830130:three_prime_UTR |
| CTCTTTGAGGATGGATCATA+AGG | 0.440712 | 5_4:+3201071 | Msa0830130:CDS |
| AAGACAATAACCATGATCAA+TGG | 0.441498 | 5_4:-3201274 | None:intergenic |
| ATACTCTCTGGATGCTGAAA+AGG | 0.444836 | 5_4:+3202226 | Msa0830130:CDS |
| GAATTTGAATAATCAGAATC+AGG | 0.447450 | 5_4:+3200570 | Msa0830130:CDS |
| AACAATATAAGGAGGTGATT+GGG | 0.456381 | 5_4:-3202698 | None:intergenic |
| CTGCTCATTCCCATTGATCA+TGG | 0.456539 | 5_4:+3201264 | Msa0830130:CDS |
| AGCTTCTGAAATATTATGGT+TGG | 0.458037 | 5_4:+3202255 | Msa0830130:CDS |
| CAGATCATGGATTCCCGCCT+TGG | 0.466401 | 5_4:+3202488 | Msa0830130:CDS |
| CCGGTTTCGGTGAATGGTGA+GGG | 0.469852 | 5_4:+3200862 | Msa0830130:CDS |
| GGATTGTGGCTCTTTGAGGA+TGG | 0.473673 | 5_4:+3201062 | Msa0830130:CDS |
| TACCCTGATGGTGGGGATTG+TGG | 0.474991 | 5_4:+3201048 | Msa0830130:CDS |
| GCTTCTGAAATATTATGGTT+GGG | 0.475469 | 5_4:+3202256 | Msa0830130:CDS |
| CGCGGATTATTAACCGCCAT+TGG | 0.475646 | 5_4:-3200832 | None:intergenic |
| TGGTGTTACTGCTCCGTCTA+CGG | 0.482678 | 5_4:-3200041 | None:intergenic |
| AGACAATAACCATGATCAAT+GGG | 0.483074 | 5_4:-3201273 | None:intergenic |
| TATATGTAATCAACTGTATC+GGG | 0.487936 | 5_4:-3202206 | None:intergenic |
| GTTAGATCTTCTGAGGGAAC+AGG | 0.492026 | 5_4:+3200739 | Msa0830130:CDS |
| TATAAGAAGGTGATGGTAAG+AGG | 0.499120 | 5_4:+3202625 | Msa0830130:three_prime_UTR |
| AATTTGAGTTTCAGATTGAT+CGG | 0.502943 | 5_4:+3200287 | Msa0830130:CDS |
| TTGAAGAAAGGGGTTGAGAG+AGG | 0.503562 | 5_4:+3202326 | Msa0830130:CDS |
| CGTTTAATTACCCTGATGGT+GGG | 0.504414 | 5_4:+3201040 | Msa0830130:CDS |
| GCGAAAAGCTTGATGATAAG+AGG | 0.505944 | 5_4:+3200404 | Msa0830130:CDS |
| CTGATATACGTCACCGTAGA+CGG | 0.506918 | 5_4:+3200028 | Msa0830130:CDS |
| GTATATGTAATCAACTGTAT+CGG | 0.506999 | 5_4:-3202207 | None:intergenic |
| AAATCAGATTCCTCCGTGCC+TGG | 0.508144 | 5_4:-3202449 | None:intergenic |
| GGGATTGAAGAGAGGGACAA+AGG | 0.509599 | 5_4:+3200882 | Msa0830130:CDS |
| TGTTCTAATCAGGGACATAT+AGG | 0.511537 | 5_4:+3202648 | Msa0830130:three_prime_UTR |
| TTGTTTAGAAAAGAGTCAAA+TGG | 0.514272 | 5_4:+3201234 | Msa0830130:CDS |
| GTAATAATATGCAATCTCTT+CGG | 0.516077 | 5_4:-3202672 | None:intergenic |
| ATGGTGAGGGATTGAAGAGA+GGG | 0.516819 | 5_4:+3200875 | Msa0830130:CDS |
| TTTCGACAGCTCACCAAGGC+GGG | 0.517562 | 5_4:-3202501 | None:intergenic |
| TAAGAATGGCGAATGCAGAT+AGG | 0.518671 | 5_4:+3201196 | Msa0830130:CDS |
| CAATTGCATCAGTGAAAATG+AGG | 0.519789 | 5_4:+3200086 | Msa0830130:CDS |
| AAAGAGTACGGTGTAACTAC+TGG | 0.519841 | 5_4:+3200193 | Msa0830130:CDS |
| CGTTGGAAGCATCATGTGTA+GGG | 0.519995 | 5_4:+3202364 | Msa0830130:CDS |
| AGTTGATTACATATACTCTC+TGG | 0.522946 | 5_4:+3202214 | Msa0830130:CDS |
| GCGAATGCAGATAGGCATGC+AGG | 0.523425 | 5_4:+3201204 | Msa0830130:CDS |
| GCCGGTTTCGGTGAATGGTG+AGG | 0.524007 | 5_4:+3200861 | Msa0830130:CDS |
| CATGATGCTTCCAACGGCAT+AGG | 0.525963 | 5_4:-3202357 | None:intergenic |
| CACAATGTTGTTGAAGAAAG+GGG | 0.526814 | 5_4:+3202316 | Msa0830130:CDS |
| ATATTGGATCATCCAAAGGC+TGG | 0.527791 | 5_4:+3200940 | Msa0830130:CDS |
| CCCTTTCTTCAACAACATTG+TGG | 0.535835 | 5_4:-3202315 | None:intergenic |
| ATCTTATGCACCTCTTGCAC+AGG | 0.541451 | 5_4:-3201159 | None:intergenic |
| AAGGTTATAGAACAACCCTC+TGG | 0.544988 | 5_4:+3200604 | Msa0830130:CDS |
| TCAGATTCCAACACACGCAT+TGG | 0.545912 | 5_4:-3200061 | None:intergenic |
| TGTATTAAAAGAAAGGGGAA+AGG | 0.545961 | 5_4:+3200337 | Msa0830130:CDS |
| TTGGTGTCTGGTGAAGCGAT+TGG | 0.546477 | 5_4:+3200970 | Msa0830130:CDS |
| AGTTTCAGATTGATCGGCAT+AGG | 0.546957 | 5_4:+3200293 | Msa0830130:CDS |
| GGAATTGTATTAAAAGAAAG+GGG | 0.547344 | 5_4:+3200332 | Msa0830130:CDS |
| AGGAGCTGTGAGAGAAGTTG+CGG | 0.549114 | 5_4:+3200912 | Msa0830130:CDS |
| AAGTCCATCCAAATATGGAC+TGG | 0.551955 | 5_4:-3202592 | None:intergenic |
| CAGTGTGCTTGATATAAGAA+TGG | 0.555819 | 5_4:+3201182 | Msa0830130:CDS |
| ATGATGCTTCCAACGGCATA+GGG | 0.557381 | 5_4:-3202356 | None:intergenic |
| GAAATCATTGCTACCAGGCA+CGG | 0.558584 | 5_4:+3202436 | Msa0830130:CDS |
| TAAACCTGTTAGATCTTCTG+AGG | 0.559006 | 5_4:+3200732 | Msa0830130:CDS |
| TTGAGGATGGATCATAAGGT+GGG | 0.562337 | 5_4:+3201075 | Msa0830130:CDS |
| GGTCTCACTCCCTATGCCGT+TGG | 0.563252 | 5_4:+3202347 | Msa0830130:CDS |
| AGAGGGACAAAGGTTGGAGA+AGG | 0.563732 | 5_4:+3200892 | Msa0830130:CDS |
| GAATAATCAGAATCAGGATG+AGG | 0.566712 | 5_4:+3200576 | Msa0830130:CDS |
| AATGGTGAGGGATTGAAGAG+AGG | 0.566744 | 5_4:+3200874 | Msa0830130:CDS |
| CCGTTGGAAGCATCATGTGT+AGG | 0.567994 | 5_4:+3202363 | Msa0830130:CDS |
| GCGTTTAATTACCCTGATGG+TGG | 0.572883 | 5_4:+3201039 | Msa0830130:CDS |
| TACTTCATGCAAGATTTCAA+AGG | 0.573102 | 5_4:+3200769 | Msa0830130:CDS |
| GCCAATTGATGAGGAACCAA+TGG | 0.574717 | 5_4:+3200816 | Msa0830130:CDS |
| TACGGTGACGTATATCAGAA+TGG | 0.576837 | 5_4:-3200023 | None:intergenic |
| GCCCAGAAATCATTGCTACC+AGG | 0.583800 | 5_4:+3202431 | Msa0830130:CDS |
| GGTAAGAGGTGTTCTAATCA+GGG | 0.586502 | 5_4:+3202639 | Msa0830130:three_prime_UTR |
| AGATCTTCTGAGGGAACAGG+TGG | 0.592366 | 5_4:+3200742 | Msa0830130:CDS |
| GTTTAATTACCCTGATGGTG+GGG | 0.592966 | 5_4:+3201041 | Msa0830130:CDS |
| CATGCAAGATTTCAAAGGTG+TGG | 0.594948 | 5_4:+3200774 | Msa0830130:CDS |
| GAAGCGTTTAATTACCCTGA+TGG | 0.595781 | 5_4:+3201036 | Msa0830130:CDS |
| AAAACCAGTCCATATTTGGA+TGG | 0.597398 | 5_4:+3202588 | Msa0830130:three_prime_UTR |
| TTATATATTGGATCATCCAA+AGG | 0.598620 | 5_4:+3200936 | Msa0830130:CDS |
| TTTGAGGATGGATCATAAGG+TGG | 0.602051 | 5_4:+3201074 | Msa0830130:CDS |
| GTTGTTGTATAAGAAGGTGA+TGG | 0.602695 | 5_4:+3202618 | Msa0830130:three_prime_UTR |
| CGAATGCAGATAGGCATGCA+GGG | 0.605455 | 5_4:+3201205 | Msa0830130:CDS |
| GAGTATGGCTGACGTGCTTG+AGG | 0.611194 | 5_4:-3202182 | None:intergenic |
| TCTATCATATCCCATAGGAA+AGG | 0.618347 | 5_4:-3200679 | None:intergenic |
| AAACCTGTTAGATCTTCTGA+GGG | 0.622266 | 5_4:+3200733 | Msa0830130:CDS |
| CCTACACATGATGCTTCCAA+CGG | 0.625450 | 5_4:-3202363 | None:intergenic |
| GAACAAAGAATCAGTGATCG+AGG | 0.625787 | 5_4:+3202394 | Msa0830130:CDS |
| AGTAACACCAATGCGTGTGT+TGG | 0.628419 | 5_4:+3200054 | Msa0830130:CDS |
| TCAACAACATTGTGGAAATG+CGG | 0.628972 | 5_4:-3202307 | None:intergenic |
| AATGCGGTGATGAAAGAGTA+CGG | 0.631647 | 5_4:+3200181 | Msa0830130:CDS |
| AGCCACAATCCCCACCATCA+GGG | 0.637152 | 5_4:-3201050 | None:intergenic |
| TTGCATCTATCATATCCCAT+AGG | 0.637801 | 5_4:-3200684 | None:intergenic |
| TGAGGATGGATCATAAGGTG+GGG | 0.651663 | 5_4:+3201076 | Msa0830130:CDS |
| TCTTGCACAGGAAAAGCACC+AGG | 0.657475 | 5_4:-3201147 | None:intergenic |
| AATTGATGAGGAACCAATGG+CGG | 0.662251 | 5_4:+3200819 | Msa0830130:CDS |
| TGTGAGGACAATGTGTGGGA+AGG | 0.662882 | 5_4:+3200264 | Msa0830130:CDS |
| ATTGTTGTGAGGACAATGTG+TGG | 0.666886 | 5_4:+3200259 | Msa0830130:CDS |
| TTGTTGTGAGGACAATGTGT+GGG | 0.668421 | 5_4:+3200260 | Msa0830130:CDS |
| CACCGCACCATAACCGTAGG+CGG | 0.670788 | 5_4:-3201006 | None:intergenic |
| AATTGTGAGGATATTGGACC+TGG | 0.674707 | 5_4:+3201129 | Msa0830130:CDS |
| TTCCGCCTACGGTTATGGTG+CGG | 0.680938 | 5_4:+3201004 | Msa0830130:CDS |
| ATCATTGCTACCAGGCACGG+AGG | 0.695943 | 5_4:+3202439 | Msa0830130:CDS |
| ATTTCGACAGCTCACCAAGG+CGG | 0.700271 | 5_4:-3202502 | None:intergenic |
| TGGATTCGCTTGAACAACGA+CGG | 0.702171 | 5_4:-3200003 | None:intergenic |
| AAACACCGCACCATAACCGT+AGG | 0.703540 | 5_4:-3201009 | None:intergenic |
| GATCTTCTGAGGGAACAGGT+GGG | 0.712393 | 5_4:+3200743 | Msa0830130:CDS |
| ATGGCGGTTAATAATCCGCG+TGG | 0.713372 | 5_4:+3200835 | Msa0830130:CDS |
| GAGTAATGATGGTAATTGTG+AGG | 0.714535 | 5_4:+3201116 | Msa0830130:CDS |
| TCTATTTCGACAGCTCACCA+AGG | 0.716631 | 5_4:-3202505 | None:intergenic |
| ACCGAAACCGGCAATCCACG+CGG | 0.729544 | 5_4:-3200850 | None:intergenic |
| AGAATTATCTCGTAACAATG+CGG | 0.734694 | 5_4:+3200165 | Msa0830130:CDS |
| GCTTCACCAGACACCAAACG+CGG | 0.759039 | 5_4:-3200964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATCTTATTGTTAAAAAAT+CGG | + | chr5_4:3200465-3200484 | Msa0830130:CDS | 15.0% |
| !! | AATATTGAATATTGAATCTA+CGG | + | chr5_4:3201631-3201650 | Msa0830130:intron | 15.0% |
| !!! | TTTTCCGATTCTTTTAAAAT+CGG | - | chr5_4:3199965-3199984 | None:intergenic | 20.0% |
| !! | TAGGAATTGTATTAAAAGAA+AGG | + | chr5_4:3200330-3200349 | Msa0830130:CDS | 20.0% |
| !! | AGGAATTGTATTAAAAGAAA+GGG | + | chr5_4:3200331-3200350 | Msa0830130:CDS | 20.0% |
| !! | AATAAAACAAGAATGTGAAA+TGG | - | chr5_4:3201317-3201336 | None:intergenic | 20.0% |
| !! | AAAACATTATAATACTGCAT+AGG | - | chr5_4:3201342-3201361 | None:intergenic | 20.0% |
| !! | TATACAAAGTTAGCATAAAA+AGG | - | chr5_4:3201573-3201592 | None:intergenic | 20.0% |
| !! | CCAATAAAAATATATCTCTT+AGG | - | chr5_4:3201676-3201695 | None:intergenic | 20.0% |
| !!! | CCTAAGAGATATATTTTTAT+TGG | + | chr5_4:3201673-3201692 | Msa0830130:intron | 20.0% |
| !! | AAGCAAAATCTAGTTTCTAA+TGG | + | chr5_4:3200139-3200158 | Msa0830130:CDS | 25.0% |
| !! | ATATGATTTTCATTGTTGTG+AGG | + | chr5_4:3200248-3200267 | Msa0830130:CDS | 25.0% |
| !! | AATTTGAGTTTCAGATTGAT+CGG | + | chr5_4:3200287-3200306 | Msa0830130:CDS | 25.0% |
| ! | GGAATTGTATTAAAAGAAAG+GGG | + | chr5_4:3200332-3200351 | Msa0830130:CDS | 25.0% |
| !!! | TGCTACTTTTGTTCATAATA+AGG | + | chr5_4:3200498-3200517 | Msa0830130:CDS | 25.0% |
| ! | GAATTTGAATAATCAGAATC+AGG | + | chr5_4:3200570-3200589 | Msa0830130:CDS | 25.0% |
| ! | AACAAAAAATCAAAACCAGA+GGG | - | chr5_4:3200622-3200641 | None:intergenic | 25.0% |
| ! | TAACAAAAAATCAAAACCAG+AGG | - | chr5_4:3200623-3200642 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAATTGATCCTA+GGG | - | chr5_4:3200663-3200682 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAAATTGATCCT+AGG | - | chr5_4:3200664-3200683 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTTCCTTTCCTA+TGG | + | chr5_4:3200668-3200687 | Msa0830130:CDS | 25.0% |
| !!! | CAATTTTTTTCCTTTCCTAT+GGG | + | chr5_4:3200669-3200688 | Msa0830130:CDS | 25.0% |
| ! | ACTTTCAATGGTTTGAAAAA+AGG | + | chr5_4:3200706-3200725 | Msa0830130:CDS | 25.0% |
| ! | TTATATATTGGATCATCCAA+AGG | + | chr5_4:3200936-3200955 | Msa0830130:CDS | 25.0% |
| ! | TTGTTTAGAAAAGAGTCAAA+TGG | + | chr5_4:3201234-3201253 | Msa0830130:CDS | 25.0% |
| !! | AATGTTTTCTATGTTCTGTT+TGG | + | chr5_4:3201354-3201373 | Msa0830130:intron | 25.0% |
| !! | TCCATAGTATAGATCTATTT+TGG | + | chr5_4:3201461-3201480 | Msa0830130:intron | 25.0% |
| ! | TCCAAAATAGATCTATACTA+TGG | - | chr5_4:3201465-3201484 | None:intergenic | 25.0% |
| !! | TAACCATGTTCGTTATATTT+TGG | + | chr5_4:3201740-3201759 | Msa0830130:intron | 25.0% |
| ! | AAAAATCTTGCAATAACTAC+TGG | - | chr5_4:3201872-3201891 | None:intergenic | 25.0% |
| ! | AACAAGTTATAAAAGTAGTC+TGG | - | chr5_4:3201936-3201955 | None:intergenic | 25.0% |
| !! | TTCTTATACATCATTTTGCA+AGG | + | chr5_4:3201967-3201986 | Msa0830130:intron | 25.0% |
| ! | TATATGTAATCAACTGTATC+GGG | - | chr5_4:3202209-3202228 | None:intergenic | 25.0% |
| ! | GTATATGTAATCAACTGTAT+CGG | - | chr5_4:3202210-3202229 | None:intergenic | 25.0% |
| !!! | ATAGAGCTTCTGAAATATTA+TGG | + | chr5_4:3202251-3202270 | Msa0830130:CDS | 25.0% |
| !! | TTTTTCTTTGTCTGATTCAT+AGG | + | chr5_4:3202533-3202552 | Msa0830130:three_prime_UTR | 25.0% |
| ! | GTAATAATATGCAATCTCTT+CGG | - | chr5_4:3202675-3202694 | None:intergenic | 25.0% |
| !! | GAGACCGATTTTAAAAGAAT+CGG | + | chr5_4:3199958-3199977 | Msa0830130:CDS | 30.0% |
| AAACACGCAAAAATGTTTCA+TGG | + | chr5_4:3200113-3200132 | Msa0830130:CDS | 30.0% | |
| AGAATTATCTCGTAACAATG+CGG | + | chr5_4:3200165-3200184 | Msa0830130:CDS | 30.0% | |
| ! | TACTGGTAATGTTGTTCATT+TGG | + | chr5_4:3200210-3200229 | Msa0830130:CDS | 30.0% |
| TGTATTAAAAGAAAGGGGAA+AGG | + | chr5_4:3200337-3200356 | Msa0830130:CDS | 30.0% | |
| ATGATAGATGCAACTTTCAA+TGG | + | chr5_4:3200694-3200713 | Msa0830130:CDS | 30.0% | |
| TACTTCATGCAAGATTTCAA+AGG | + | chr5_4:3200769-3200788 | Msa0830130:CDS | 30.0% | |
| !! | TGTTTTTAAGCCAATTGATG+AGG | + | chr5_4:3200807-3200826 | Msa0830130:CDS | 30.0% |
| CAGAAGTTTATGAGTAATGA+TGG | + | chr5_4:3201105-3201124 | Msa0830130:CDS | 30.0% | |
| AGACAATAACCATGATCAAT+GGG | - | chr5_4:3201276-3201295 | None:intergenic | 30.0% | |
| AAGACAATAACCATGATCAA+TGG | - | chr5_4:3201277-3201296 | None:intergenic | 30.0% | |
| ! | TCTATACTATGGATTGACAT+CGG | - | chr5_4:3201454-3201473 | None:intergenic | 30.0% |
| GAGATTCATCGTAATAAATC+GGG | - | chr5_4:3201507-3201526 | None:intergenic | 30.0% | |
| CGAGATTCATCGTAATAAAT+CGG | - | chr5_4:3201508-3201527 | None:intergenic | 30.0% | |
| TTACTTAAACTTAGTGCAGT+CGG | + | chr5_4:3201546-3201565 | Msa0830130:intron | 30.0% | |
| CATCCAAAATATAACGAACA+TGG | - | chr5_4:3201746-3201765 | None:intergenic | 30.0% | |
| GATGTCAGTTTAGACTTATA+TGG | + | chr5_4:3201822-3201841 | Msa0830130:intron | 30.0% | |
| GAACTTAATACGTATGTCAT+AGG | + | chr5_4:3202057-3202076 | Msa0830130:intron | 30.0% | |
| TTGAAGATTGCACATTTGAT+TGG | + | chr5_4:3202150-3202169 | Msa0830130:CDS | 30.0% | |
| AGTTGATTACATATACTCTC+TGG | + | chr5_4:3202214-3202233 | Msa0830130:CDS | 30.0% | |
| !! | AGCTTCTGAAATATTATGGT+TGG | + | chr5_4:3202255-3202274 | Msa0830130:CDS | 30.0% |
| !! | GCTTCTGAAATATTATGGTT+GGG | + | chr5_4:3202256-3202275 | Msa0830130:CDS | 30.0% |
| CTTAAGGTTGTTGTATAAGA+AGG | + | chr5_4:3202612-3202631 | Msa0830130:three_prime_UTR | 30.0% | |
| AACAATATAAGGAGGTGATT+GGG | - | chr5_4:3202701-3202720 | None:intergenic | 30.0% | |
| AAACAATATAAGGAGGTGAT+TGG | - | chr5_4:3202702-3202721 | None:intergenic | 30.0% | |
| !! | CACCTCCTTATATTGTTTTT+CGG | + | chr5_4:3202704-3202723 | Msa0830130:three_prime_UTR | 30.0% |
| !! | ACCTCCTTATATTGTTTTTC+GGG | + | chr5_4:3202705-3202724 | Msa0830130:three_prime_UTR | 30.0% |
| CAATCCCGAAAAACAATATA+AGG | - | chr5_4:3202712-3202731 | None:intergenic | 30.0% | |
| CAATTGCATCAGTGAAAATG+AGG | + | chr5_4:3200086-3200105 | Msa0830130:CDS | 35.0% | |
| !!! | AGGTTTTGTTGATCTTGTTG+AGG | + | chr5_4:3200357-3200376 | Msa0830130:CDS | 35.0% |
| !!! | GAACAAGAGTTTTTTTGCAG+CGG | + | chr5_4:3200382-3200401 | Msa0830130:CDS | 35.0% |
| GAATAATCAGAATCAGGATG+AGG | + | chr5_4:3200576-3200595 | Msa0830130:CDS | 35.0% | |
| TCTATCATATCCCATAGGAA+AGG | - | chr5_4:3200682-3200701 | None:intergenic | 35.0% | |
| TTGCATCTATCATATCCCAT+AGG | - | chr5_4:3200687-3200706 | None:intergenic | 35.0% | |
| TAAACCTGTTAGATCTTCTG+AGG | + | chr5_4:3200732-3200751 | Msa0830130:CDS | 35.0% | |
| AAACCTGTTAGATCTTCTGA+GGG | + | chr5_4:3200733-3200752 | Msa0830130:CDS | 35.0% | |
| AGAAGTTGCGGCTTATATAT+TGG | + | chr5_4:3200924-3200943 | Msa0830130:CDS | 35.0% | |
| GAGTAATGATGGTAATTGTG+AGG | + | chr5_4:3201116-3201135 | Msa0830130:CDS | 35.0% | |
| GATGGTAATTGTGAGGATAT+TGG | + | chr5_4:3201123-3201142 | Msa0830130:CDS | 35.0% | |
| CAGTGTGCTTGATATAAGAA+TGG | + | chr5_4:3201182-3201201 | Msa0830130:CDS | 35.0% | |
| AAATGGTGACTTACTTTCTC+AGG | - | chr5_4:3201300-3201319 | None:intergenic | 35.0% | |
| AATGACAAAAGATAAGCGAC+TGG | - | chr5_4:3201597-3201616 | None:intergenic | 35.0% | |
| TCAACAACATTGTGGAAATG+CGG | - | chr5_4:3202310-3202329 | None:intergenic | 35.0% | |
| TCCACAATGTTGTTGAAGAA+AGG | + | chr5_4:3202314-3202333 | Msa0830130:CDS | 35.0% | |
| CCACAATGTTGTTGAAGAAA+GGG | + | chr5_4:3202315-3202334 | Msa0830130:CDS | 35.0% | |
| CACAATGTTGTTGAAGAAAG+GGG | + | chr5_4:3202316-3202335 | Msa0830130:CDS | 35.0% | |
| GAAGAAAACCAGTCCATATT+TGG | + | chr5_4:3202584-3202603 | Msa0830130:three_prime_UTR | 35.0% | |
| AAAACCAGTCCATATTTGGA+TGG | + | chr5_4:3202588-3202607 | Msa0830130:three_prime_UTR | 35.0% | |
| ! | TCCATATTTGGATGGACTTA+AGG | + | chr5_4:3202596-3202615 | Msa0830130:three_prime_UTR | 35.0% |
| ACCTTAAGTCCATCCAAATA+TGG | - | chr5_4:3202600-3202619 | None:intergenic | 35.0% | |
| GTTGTTGTATAAGAAGGTGA+TGG | + | chr5_4:3202618-3202637 | Msa0830130:three_prime_UTR | 35.0% | |
| ! | TATAAGAAGGTGATGGTAAG+AGG | + | chr5_4:3202625-3202644 | Msa0830130:three_prime_UTR | 35.0% |
| TGTTCTAATCAGGGACATAT+AGG | + | chr5_4:3202648-3202667 | Msa0830130:three_prime_UTR | 35.0% | |
| TCCCGAAAAACAATATAAGG+AGG | - | chr5_4:3202709-3202728 | None:intergenic | 35.0% | |
| TACGGTGACGTATATCAGAA+TGG | - | chr5_4:3200026-3200045 | None:intergenic | 40.0% | |
| AATGCGGTGATGAAAGAGTA+CGG | + | chr5_4:3200181-3200200 | Msa0830130:CDS | 40.0% | |
| ! | AAAGAGTACGGTGTAACTAC+TGG | + | chr5_4:3200193-3200212 | Msa0830130:CDS | 40.0% |
| ATTGTTGTGAGGACAATGTG+TGG | + | chr5_4:3200259-3200278 | Msa0830130:CDS | 40.0% | |
| TTGTTGTGAGGACAATGTGT+GGG | + | chr5_4:3200260-3200279 | Msa0830130:CDS | 40.0% | |
| AGTTTCAGATTGATCGGCAT+AGG | + | chr5_4:3200293-3200312 | Msa0830130:CDS | 40.0% | |
| ATAGGAACGTTGCACATCTT+AGG | + | chr5_4:3200311-3200330 | Msa0830130:CDS | 40.0% | |
| ! | GCGAAAAGCTTGATGATAAG+AGG | + | chr5_4:3200404-3200423 | Msa0830130:CDS | 40.0% |
| GAATCAGGATGAGGTTGTTA+AGG | + | chr5_4:3200585-3200604 | Msa0830130:CDS | 40.0% | |
| AAGGTTATAGAACAACCCTC+TGG | + | chr5_4:3200604-3200623 | Msa0830130:CDS | 40.0% | |
| ATCCTAGGGTTCACGAAAAT+CGG | - | chr5_4:3200649-3200668 | None:intergenic | 40.0% | |
| CATGCAAGATTTCAAAGGTG+TGG | + | chr5_4:3200774-3200793 | Msa0830130:CDS | 40.0% | |
| AATTGATGAGGAACCAATGG+CGG | + | chr5_4:3200819-3200838 | Msa0830130:CDS | 40.0% | |
| ATATTGGATCATCCAAAGGC+TGG | + | chr5_4:3200940-3200959 | Msa0830130:CDS | 40.0% | |
| ! | GAAGCGTTTAATTACCCTGA+TGG | + | chr5_4:3201036-3201055 | Msa0830130:CDS | 40.0% |
| CGTTTAATTACCCTGATGGT+GGG | + | chr5_4:3201040-3201059 | Msa0830130:CDS | 40.0% | |
| ! | GTTTAATTACCCTGATGGTG+GGG | + | chr5_4:3201041-3201060 | Msa0830130:CDS | 40.0% |
| ! | CTCTTTGAGGATGGATCATA+AGG | + | chr5_4:3201071-3201090 | Msa0830130:CDS | 40.0% |
| TTTGAGGATGGATCATAAGG+TGG | + | chr5_4:3201074-3201093 | Msa0830130:CDS | 40.0% | |
| TTGAGGATGGATCATAAGGT+GGG | + | chr5_4:3201075-3201094 | Msa0830130:CDS | 40.0% | |
| AATTGTGAGGATATTGGACC+TGG | + | chr5_4:3201129-3201148 | Msa0830130:CDS | 40.0% | |
| TAAGAATGGCGAATGCAGAT+AGG | + | chr5_4:3201196-3201215 | Msa0830130:CDS | 40.0% | |
| !! | GCACATTTGATTGGCTTTAC+TGG | + | chr5_4:3202159-3202178 | Msa0830130:CDS | 40.0% |
| ATACTCTCTGGATGCTGAAA+AGG | + | chr5_4:3202226-3202245 | Msa0830130:CDS | 40.0% | |
| CCCTTTCTTCAACAACATTG+TGG | - | chr5_4:3202318-3202337 | None:intergenic | 40.0% | |
| GAACAAAGAATCAGTGATCG+AGG | + | chr5_4:3202394-3202413 | Msa0830130:CDS | 40.0% | |
| CGAATTTGTATCGCAGATCA+TGG | + | chr5_4:3202475-3202494 | Msa0830130:CDS | 40.0% | |
| AAGTCCATCCAAATATGGAC+TGG | - | chr5_4:3202595-3202614 | None:intergenic | 40.0% | |
| !! | TGGTAAGAGGTGTTCTAATC+AGG | + | chr5_4:3202638-3202657 | Msa0830130:three_prime_UTR | 40.0% |
| !! | GGTAAGAGGTGTTCTAATCA+GGG | + | chr5_4:3202639-3202658 | Msa0830130:three_prime_UTR | 40.0% |
| TGGATTCGCTTGAACAACGA+CGG | - | chr5_4:3200006-3200025 | None:intergenic | 45.0% | |
| CTGATATACGTCACCGTAGA+CGG | + | chr5_4:3200028-3200047 | Msa0830130:CDS | 45.0% | |
| AGTAACACCAATGCGTGTGT+TGG | + | chr5_4:3200054-3200073 | Msa0830130:CDS | 45.0% | |
| TCAGATTCCAACACACGCAT+TGG | - | chr5_4:3200064-3200083 | None:intergenic | 45.0% | |
| !! | AACCGATTTTCGTGAACCCT+AGG | + | chr5_4:3200644-3200663 | Msa0830130:CDS | 45.0% |
| GTTCCCTCAGAAGATCTAAC+AGG | - | chr5_4:3200739-3200758 | None:intergenic | 45.0% | |
| ! | GTTAGATCTTCTGAGGGAAC+AGG | + | chr5_4:3200739-3200758 | Msa0830130:CDS | 45.0% |
| GCCAATTGATGAGGAACCAA+TGG | + | chr5_4:3200816-3200835 | Msa0830130:CDS | 45.0% | |
| !! | GCCATTGGTTCCTCATCAAT+TGG | - | chr5_4:3200820-3200839 | None:intergenic | 45.0% |
| ! | TAATAATCCGCGTGGATTGC+CGG | + | chr5_4:3200843-3200862 | Msa0830130:CDS | 45.0% |
| AATGGTGAGGGATTGAAGAG+AGG | + | chr5_4:3200874-3200893 | Msa0830130:CDS | 45.0% | |
| ATGGTGAGGGATTGAAGAGA+GGG | + | chr5_4:3200875-3200894 | Msa0830130:CDS | 45.0% | |
| TTGAAGAGAGGGACAAAGGT+TGG | + | chr5_4:3200886-3200905 | Msa0830130:CDS | 45.0% | |
| GCGTTTAATTACCCTGATGG+TGG | + | chr5_4:3201039-3201058 | Msa0830130:CDS | 45.0% | |
| TGAGGATGGATCATAAGGTG+GGG | + | chr5_4:3201076-3201095 | Msa0830130:CDS | 45.0% | |
| ATCTTATGCACCTCTTGCAC+AGG | - | chr5_4:3201162-3201181 | None:intergenic | 45.0% | |
| CTGCTCATTCCCATTGATCA+TGG | + | chr5_4:3201264-3201283 | Msa0830130:CDS | 45.0% | |
| ACTGACATCTGCATCTCAGT+TGG | - | chr5_4:3201811-3201830 | None:intergenic | 45.0% | |
| CTTCAGCAACTTCGTATGCA+TGG | - | chr5_4:3202017-3202036 | None:intergenic | 45.0% | |
| CATGCATACGAAGTTGCTGA+AGG | + | chr5_4:3202015-3202034 | Msa0830130:intron | 45.0% | |
| TCAACTGTATCGGGAGAGTA+TGG | - | chr5_4:3202200-3202219 | None:intergenic | 45.0% | |
| AGTGTTCTAGCACTCTCAAC+TGG | - | chr5_4:3202287-3202306 | None:intergenic | 45.0% | |
| TTGAAGAAAGGGGTTGAGAG+AGG | + | chr5_4:3202326-3202345 | Msa0830130:CDS | 45.0% | |
| ATGATGCTTCCAACGGCATA+GGG | - | chr5_4:3202359-3202378 | None:intergenic | 45.0% | |
| CCTACACATGATGCTTCCAA+CGG | - | chr5_4:3202366-3202385 | None:intergenic | 45.0% | |
| !! | CGTTGGAAGCATCATGTGTA+GGG | + | chr5_4:3202364-3202383 | Msa0830130:CDS | 45.0% |
| GCCTGGTAGCAATGATTTCT+GGG | - | chr5_4:3202435-3202454 | None:intergenic | 45.0% | |
| TGCCTGGTAGCAATGATTTC+TGG | - | chr5_4:3202436-3202455 | None:intergenic | 45.0% | |
| GAAATCATTGCTACCAGGCA+CGG | + | chr5_4:3202436-3202455 | Msa0830130:CDS | 45.0% | |
| TCTATTTCGACAGCTCACCA+AGG | - | chr5_4:3202508-3202527 | None:intergenic | 45.0% | |
| !! | TGGTGTTACTGCTCCGTCTA+CGG | - | chr5_4:3200044-3200063 | None:intergenic | 50.0% |
| TGTGAGGACAATGTGTGGGA+AGG | + | chr5_4:3200264-3200283 | Msa0830130:CDS | 50.0% | |
| ! | AGATCTTCTGAGGGAACAGG+TGG | + | chr5_4:3200742-3200761 | Msa0830130:CDS | 50.0% |
| ! | GATCTTCTGAGGGAACAGGT+GGG | + | chr5_4:3200743-3200762 | Msa0830130:CDS | 50.0% |
| ! | CGCGGATTATTAACCGCCAT+TGG | - | chr5_4:3200835-3200854 | None:intergenic | 50.0% |
| ATGGCGGTTAATAATCCGCG+TGG | + | chr5_4:3200835-3200854 | Msa0830130:CDS | 50.0% | |
| GGGATTGAAGAGAGGGACAA+AGG | + | chr5_4:3200882-3200901 | Msa0830130:CDS | 50.0% | |
| AGAGGGACAAAGGTTGGAGA+AGG | + | chr5_4:3200892-3200911 | Msa0830130:CDS | 50.0% | |
| AGGAGCTGTGAGAGAAGTTG+CGG | + | chr5_4:3200912-3200931 | Msa0830130:CDS | 50.0% | |
| ! | TTGGTGTCTGGTGAAGCGAT+TGG | + | chr5_4:3200970-3200989 | Msa0830130:CDS | 50.0% |
| !!! | GGTGAAGCGATTGGTTTTGC+TGG | + | chr5_4:3200979-3200998 | Msa0830130:CDS | 50.0% |
| ! | TTTTGCTGGTGTTCCGCCTA+CGG | + | chr5_4:3200993-3201012 | Msa0830130:CDS | 50.0% |
| AAACACCGCACCATAACCGT+AGG | - | chr5_4:3201012-3201031 | None:intergenic | 50.0% | |
| ! | GGATTGTGGCTCTTTGAGGA+TGG | + | chr5_4:3201062-3201081 | Msa0830130:CDS | 50.0% |
| !! | TCTTGCACAGGAAAAGCACC+AGG | - | chr5_4:3201150-3201169 | None:intergenic | 50.0% |
| ! | TGGTGCTTTTCCTGTGCAAG+AGG | + | chr5_4:3201149-3201168 | Msa0830130:CDS | 50.0% |
| CGAATGCAGATAGGCATGCA+GGG | + | chr5_4:3201205-3201224 | Msa0830130:CDS | 50.0% | |
| GCATACGAAGTTGCTGAAGG+TGG | + | chr5_4:3202018-3202037 | Msa0830130:intron | 50.0% | |
| CATGATGCTTCCAACGGCAT+AGG | - | chr5_4:3202360-3202379 | None:intergenic | 50.0% | |
| !! | CCGTTGGAAGCATCATGTGT+AGG | + | chr5_4:3202363-3202382 | Msa0830130:CDS | 50.0% |
| GCCCAGAAATCATTGCTACC+AGG | + | chr5_4:3202431-3202450 | Msa0830130:CDS | 50.0% | |
| AAATCAGATTCCTCCGTGCC+TGG | - | chr5_4:3202452-3202471 | None:intergenic | 50.0% | |
| ATTTCGACAGCTCACCAAGG+CGG | - | chr5_4:3202505-3202524 | None:intergenic | 50.0% | |
| !! | GGATTGCCGGTTTCGGTGAA+TGG | + | chr5_4:3200856-3200875 | Msa0830130:CDS | 55.0% |
| CCCTCACCATTCACCGAAAC+CGG | - | chr5_4:3200865-3200884 | None:intergenic | 55.0% | |
| CCGGTTTCGGTGAATGGTGA+GGG | + | chr5_4:3200862-3200881 | Msa0830130:CDS | 55.0% | |
| GCTTCACCAGACACCAAACG+CGG | - | chr5_4:3200967-3200986 | None:intergenic | 55.0% | |
| TGGTGTTCCGCCTACGGTTA+TGG | + | chr5_4:3200999-3201018 | Msa0830130:CDS | 55.0% | |
| TTCCGCCTACGGTTATGGTG+CGG | + | chr5_4:3201004-3201023 | Msa0830130:CDS | 55.0% | |
| !! | TACCCTGATGGTGGGGATTG+TGG | + | chr5_4:3201048-3201067 | Msa0830130:CDS | 55.0% |
| AGCCACAATCCCCACCATCA+GGG | - | chr5_4:3201053-3201072 | None:intergenic | 55.0% | |
| GTGGGGATTGTGGCTCTTTG+AGG | + | chr5_4:3201058-3201077 | Msa0830130:CDS | 55.0% | |
| GCGAATGCAGATAGGCATGC+AGG | + | chr5_4:3201204-3201223 | Msa0830130:CDS | 55.0% | |
| GAGTATGGCTGACGTGCTTG+AGG | - | chr5_4:3202185-3202204 | None:intergenic | 55.0% | |
| ATCATTGCTACCAGGCACGG+AGG | + | chr5_4:3202439-3202458 | Msa0830130:CDS | 55.0% | |
| CAGATCATGGATTCCCGCCT+TGG | + | chr5_4:3202488-3202507 | Msa0830130:CDS | 55.0% | |
| TTTCGACAGCTCACCAAGGC+GGG | - | chr5_4:3202504-3202523 | None:intergenic | 55.0% | |
| !! | TCCGCGTGGATTGCCGGTTT+CGG | + | chr5_4:3200849-3200868 | Msa0830130:CDS | 60.0% |
| ACCGAAACCGGCAATCCACG+CGG | - | chr5_4:3200853-3200872 | None:intergenic | 60.0% | |
| ! | GCCGGTTTCGGTGAATGGTG+AGG | + | chr5_4:3200861-3200880 | Msa0830130:CDS | 60.0% |
| TCCAAAGGCTGGACCGCGTT+TGG | + | chr5_4:3200951-3200970 | Msa0830130:CDS | 60.0% | |
| ACCAAACGCGGTCCAGCCTT+TGG | - | chr5_4:3200955-3200974 | None:intergenic | 60.0% | |
| CACCGCACCATAACCGTAGG+CGG | - | chr5_4:3201009-3201028 | None:intergenic | 60.0% | |
| GAGCCACAATCCCCACCATC+AGG | - | chr5_4:3201054-3201073 | None:intergenic | 60.0% | |
| GGTCTCACTCCCTATGCCGT+TGG | + | chr5_4:3202347-3202366 | Msa0830130:CDS | 60.0% | |
| !! | GCTGGACCGCGTTTGGTGTC+TGG | + | chr5_4:3200958-3200977 | Msa0830130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3199935 | 3202752 | 3199935 | ID=Msa0830130;Name=Msa0830130 |
| chr5_4 | mRNA | 3199935 | 3202752 | 3199935 | ID=Msa0830130-mRNA-1;Parent=Msa0830130;Name=Msa0830130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.5|1|1|1|2|226|582 |
| chr5_4 | exon | 3199935 | 3201305 | 3199935 | ID=Msa0830130-mRNA-1:exon:1143;Parent=Msa0830130-mRNA-1 |
| chr5_4 | exon | 3202149 | 3202752 | 3202149 | ID=Msa0830130-mRNA-1:exon:1144;Parent=Msa0830130-mRNA-1 |
| chr5_4 | CDS | 3199935 | 3201305 | 3199935 | ID=Msa0830130-mRNA-1:cds;Parent=Msa0830130-mRNA-1 |
| chr5_4 | CDS | 3202149 | 3202526 | 3202149 | ID=Msa0830130-mRNA-1:cds;Parent=Msa0830130-mRNA-1 |
| chr5_4 | three_prime_UTR | 3202527 | 3202752 | 3202527 | ID=Msa0830130-mRNA-1:three_prime_utr;Parent=Msa0830130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
