Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835900 | XP_003611667.2 | 94.294 | 333 | 18 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835900 | sp|Q9FGQ6|EB1C_ARATH | 61.383 | 347 | 98 | 10 | 1 | 331 | 1 | 327 | 3.48e-139 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835900 | G7K588 | 94.294 | 333 | 18 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038940 | Msa0835900 | 0.824559 | 7.557932e-54 | -8.615850e-47 |
| Msa0048510 | Msa0835900 | 0.816813 | 4.558167e-52 | -8.615850e-47 |
| Msa0067330 | Msa0835900 | 0.823316 | 1.479048e-53 | -8.615850e-47 |
| Msa0075530 | Msa0835900 | 0.806318 | 8.720417e-50 | -8.615850e-47 |
| Msa0077560 | Msa0835900 | 0.834258 | 3.325251e-56 | -8.615850e-47 |
| Msa0081980 | Msa0835900 | 0.811127 | 8.179297e-51 | -8.615850e-47 |
| Msa0082020 | Msa0835900 | 0.820514 | 6.588920e-53 | -8.615850e-47 |
| Msa0094780 | Msa0835900 | 0.836684 | 8.102290e-57 | -8.615850e-47 |
| Msa0606100 | Msa0835900 | 0.810375 | 1.189306e-50 | -8.615850e-47 |
| Msa0621710 | Msa0835900 | 0.800316 | 1.525909e-48 | -8.615850e-47 |
| Msa0624900 | Msa0835900 | 0.807261 | 5.511127e-50 | -8.615850e-47 |
| Msa0657700 | Msa0835900 | 0.801480 | 8.828249e-49 | -8.615850e-47 |
| Msa0658640 | Msa0835900 | 0.830507 | 2.824129e-55 | -8.615850e-47 |
| Msa0666700 | Msa0835900 | 0.829537 | 4.870765e-55 | -8.615850e-47 |
| Msa0670100 | Msa0835900 | 0.806334 | 8.652642e-50 | -8.615850e-47 |
| Msa0702810 | Msa0835900 | 0.820035 | 8.485802e-53 | -8.615850e-47 |
| Msa0703600 | Msa0835900 | 0.840145 | 1.037025e-57 | -8.615850e-47 |
| Msa0709200 | Msa0835900 | 0.842486 | 2.510775e-58 | -8.615850e-47 |
| Msa0709440 | Msa0835900 | 0.838486 | 2.795226e-57 | -8.615850e-47 |
| Msa0709630 | Msa0835900 | 0.815694 | 8.108613e-52 | -8.615850e-47 |
| Msa0714790 | Msa0835900 | 0.830314 | 3.149611e-55 | -8.615850e-47 |
| Msa0735780 | Msa0835900 | 0.819351 | 1.215778e-52 | -8.615850e-47 |
| Msa0749890 | Msa0835900 | 0.802230 | 6.191509e-49 | -8.615850e-47 |
| Msa0755760 | Msa0835900 | 0.943127 | 2.106388e-102 | -8.615850e-47 |
| Msa0756590 | Msa0835900 | 0.945216 | 4.624016e-104 | -8.615850e-47 |
| Msa0756820 | Msa0835900 | 0.810861 | 9.338960e-51 | -8.615850e-47 |
| Msa0758650 | Msa0835900 | 0.807261 | 5.510569e-50 | -8.615850e-47 |
| Msa0773630 | Msa0835900 | 0.832226 | 1.066781e-55 | -8.615850e-47 |
| Msa0777750 | Msa0835900 | 0.817633 | 2.979890e-52 | -8.615850e-47 |
| Msa0780910 | Msa0835900 | 0.807463 | 4.992519e-50 | -8.615850e-47 |
| Msa0795870 | Msa0835900 | 0.813625 | 2.328711e-51 | -8.615850e-47 |
| Msa0811020 | Msa0835900 | 0.806317 | 8.722989e-50 | -8.615850e-47 |
| Msa0818880 | Msa0835900 | 0.803137 | 4.024868e-49 | -8.615850e-47 |
| Msa0828970 | Msa0835900 | 0.822188 | 2.707994e-53 | -8.615850e-47 |
| Msa0830130 | Msa0835900 | 0.807314 | 5.369232e-50 | -8.615850e-47 |
| Msa0830460 | Msa0835900 | 0.807108 | 5.937121e-50 | -8.615850e-47 |
| Msa0833650 | Msa0835900 | 0.821789 | 3.350115e-53 | -8.615850e-47 |
| Msa0835900 | Msa0836150 | 0.804384 | 2.217352e-49 | -8.615850e-47 |
| Msa0835900 | Msa0863620 | 0.850349 | 1.798124e-60 | -8.615850e-47 |
| Msa0835900 | Msa0878280 | 0.834912 | 2.277148e-56 | -8.615850e-47 |
| Msa0835900 | Msa0900760 | 0.822886 | 1.863650e-53 | -8.615850e-47 |
| Msa0835900 | Msa0997920 | 0.808914 | 2.450266e-50 | -8.615850e-47 |
| Msa0835900 | Msa1001740 | 0.835446 | 1.670487e-56 | -8.615850e-47 |
| Msa0835900 | Msa1037540 | 0.828550 | 8.449446e-55 | -8.615850e-47 |
| Msa0835900 | Msa1080000 | 0.810161 | 1.322489e-50 | -8.615850e-47 |
| Msa0835900 | Msa1082200 | 0.802598 | 5.200783e-49 | -8.615850e-47 |
| Msa0835900 | Msa1084530 | 0.837758 | 4.303395e-57 | -8.615850e-47 |
| Msa0835900 | Msa1125820 | 0.835589 | 1.536903e-56 | -8.615850e-47 |
| Msa0835900 | Msa1125990 | 0.837084 | 6.404893e-57 | -8.615850e-47 |
| Msa0835900 | Msa1130420 | 0.820453 | 6.805632e-53 | -8.615850e-47 |
| Msa0835900 | Msa1132530 | 0.814882 | 1.228432e-51 | -8.615850e-47 |
| Msa0835900 | Msa1132840 | 0.822265 | 2.597758e-53 | -8.615850e-47 |
| Msa0835900 | Msa1154100 | 0.816693 | 4.847329e-52 | -8.615850e-47 |
| Msa0835900 | Msa1171290 | 0.835686 | 1.452071e-56 | -8.615850e-47 |
| Msa0835900 | Msa1192570 | 0.830630 | 2.635495e-55 | -8.615850e-47 |
| Msa0835900 | Msa1208950 | 0.815467 | 9.106064e-52 | -8.615850e-47 |
| Msa0835900 | Msa1226520 | 0.829114 | 6.170324e-55 | -8.615850e-47 |
| Msa0835900 | Msa1240260 | 0.814267 | 1.681103e-51 | -8.615850e-47 |
| Msa0835900 | Msa1244240 | 0.820522 | 6.561967e-53 | -8.615850e-47 |
| Msa0835900 | Msa1263780 | 0.837204 | 5.967676e-57 | -8.615850e-47 |
| Msa0835900 | Msa1356060 | 0.801789 | 7.627214e-49 | -8.615850e-47 |
| Msa0835900 | Msa1366150 | 0.831992 | 1.218628e-55 | -8.615850e-47 |
| Msa0835900 | Msa1381180 | 0.801645 | 8.163892e-49 | -8.615850e-47 |
| Msa0835900 | Msa1384150 | 0.800456 | 1.428795e-48 | -8.615850e-47 |
| Msa0835900 | Msa1387440 | 0.804249 | 2.365674e-49 | -8.615850e-47 |
| Msa0835900 | Msa1397400 | 0.820674 | 6.053164e-53 | -8.615850e-47 |
| Msa0835900 | Msa1420950 | 0.813717 | 2.222534e-51 | -8.615850e-47 |
| Msa0835900 | Msa1429070 | 0.807655 | 4.546707e-50 | -8.615850e-47 |
| Msa0835900 | Msa1446100 | 0.814169 | 1.766327e-51 | -8.615850e-47 |
| Msa0835900 | Msa1447170 | 0.820561 | 6.427863e-53 | -8.615850e-47 |
| Msa0128460 | Msa0835900 | 0.812408 | 4.304576e-51 | -8.615850e-47 |
| Msa0140280 | Msa0835900 | 0.818015 | 2.443422e-52 | -8.615850e-47 |
| Msa0143670 | Msa0835900 | 0.804505 | 2.091608e-49 | -8.615850e-47 |
| Msa0158860 | Msa0835900 | 0.813110 | 3.020743e-51 | -8.615850e-47 |
| Msa0174290 | Msa0835900 | 0.813637 | 2.313801e-51 | -8.615850e-47 |
| Msa0181650 | Msa0835900 | 0.822355 | 2.476478e-53 | -8.615850e-47 |
| Msa0200050 | Msa0835900 | 0.802875 | 4.559102e-49 | -8.615850e-47 |
| Msa0213030 | Msa0835900 | 0.805183 | 1.509661e-49 | -8.615850e-47 |
| Msa0225860 | Msa0835900 | 0.814493 | 1.498413e-51 | -8.615850e-47 |
| Msa0367520 | Msa0835900 | 0.805052 | 1.608062e-49 | -8.615850e-47 |
| Msa0373500 | Msa0835900 | 0.806795 | 6.915041e-50 | -8.615850e-47 |
| Msa0380670 | Msa0835900 | 0.804281 | 2.328798e-49 | -8.615850e-47 |
| Msa0459740 | Msa0835900 | 0.807308 | 5.384536e-50 | -8.615850e-47 |
| Msa0481890 | Msa0835900 | 0.835692 | 1.447608e-56 | -8.615850e-47 |
| Msa0260510 | Msa0835900 | 0.819606 | 1.063029e-52 | -8.615850e-47 |
| Msa0269210 | Msa0835900 | 0.830729 | 2.492040e-55 | -8.615850e-47 |
| Msa0298470 | Msa0835900 | 0.828595 | 8.240431e-55 | -8.615850e-47 |
| Msa0337480 | Msa0835900 | 0.808599 | 2.861068e-50 | -8.615850e-47 |
| Msa0343010 | Msa0835900 | 0.818825 | 1.601419e-52 | -8.615850e-47 |
| Msa0506950 | Msa0835900 | 0.807022 | 6.190364e-50 | -8.615850e-47 |
| Msa0567170 | Msa0835900 | 0.834712 | 2.557814e-56 | -8.615850e-47 |
| Msa0580370 | Msa0835900 | 0.824862 | 6.414690e-54 | -8.615850e-47 |
| Msa0580810 | Msa0835900 | 0.802168 | 6.375516e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835900 | MtrunA17_Chr5g0401741 | 94.294 | 333 | 18 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| Msa0835900 | MtrunA17_Chr3g0092651 | 58.304 | 283 | 94 | 6 | 1 | 275 | 1 | 267 | 8.50e-112 | 325 |
| Msa0835900 | MtrunA17_Chr4g0060561 | 58.333 | 276 | 88 | 5 | 1 | 267 | 1 | 258 | 2.14e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835900 | AT5G67270.1 | 61.383 | 347 | 98 | 10 | 1 | 331 | 1 | 327 | 3.54e-140 | 400 |
| Msa0835900 | AT3G47690.1 | 57.509 | 273 | 96 | 4 | 1 | 271 | 1 | 255 | 5.08e-110 | 322 |
| Msa0835900 | AT5G62500.1 | 57.401 | 277 | 97 | 5 | 1 | 271 | 1 | 262 | 7.17e-108 | 317 |
Find 84 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAGGAAGAAAACTATTT+TGG | 0.194254 | 5_4:+9311521 | Msa0835900:three_prime_UTR |
| TATAATCATAGCTATATTTC+TGG | 0.208265 | 5_4:-9311660 | None:intergenic |
| ATTGATTTATGTTATGAATA+TGG | 0.219609 | 5_4:+9311589 | Msa0835900:three_prime_UTR |
| TATAATCCAGTGTTATTTCT+TGG | 0.229851 | 5_4:+9311695 | Msa0835900:three_prime_UTR |
| TACTGTGATTCTGTTAATTC+TGG | 0.239455 | 5_4:+9309971 | Msa0835900:CDS |
| ATGTTATGAATATGGTTATA+TGG | 0.253970 | 5_4:+9311597 | Msa0835900:three_prime_UTR |
| AGGAAGACCGTTGGATAATC+TGG | 0.313939 | 5_4:+9309925 | Msa0835900:CDS |
| TGAGATGATTCAGAATTATA+AGG | 0.333556 | 5_4:+9309731 | Msa0835900:CDS |
| AATTGGAACCTCTTCGACTT+TGG | 0.334561 | 5_4:-9309496 | None:intergenic |
| TCCTCAGAAACCTCAGCAAT+GGG | 0.351899 | 5_4:-9311348 | None:intergenic |
| GCAACAGTGGCGACGGCAGC+AGG | 0.357205 | 5_4:-9310896 | None:intergenic |
| GGCGACGAACATTGGAATAA+TGG | 0.366648 | 5_4:+9309404 | Msa0835900:CDS |
| ACCGGTGAATGTTCTACTTC+AGG | 0.375265 | 5_4:-9311124 | None:intergenic |
| TTTCGAATGTTCACCATAAC+GGG | 0.386900 | 5_4:+9311472 | Msa0835900:CDS |
| AGAGAGATGTGCAGGGGAGG+AGG | 0.387265 | 5_4:+9310722 | Msa0835900:CDS |
| TCGTCTAGGAGACAAATTAT+TGG | 0.405029 | 5_4:-9311436 | None:intergenic |
| TCATGAGAGGTGACCCGTTA+TGG | 0.407788 | 5_4:-9311485 | None:intergenic |
| CTTCTTGATGCCGCTCATCC+TGG | 0.411853 | 5_4:+9309663 | Msa0835900:CDS |
| ATTACCAACAGCTATACTTC+TGG | 0.412239 | 5_4:-9311631 | None:intergenic |
| TTATGCATCGGAACAATTCC+AGG | 0.415843 | 5_4:-9309681 | None:intergenic |
| TCGTTTCAGTTATAATCCTT+TGG | 0.416745 | 5_4:+9310694 | Msa0835900:intron |
| AACCCTGAGGTTGATGCTGC+TGG | 0.418093 | 5_4:+9311411 | Msa0835900:CDS |
| AGCTCCTGCATATGATCAAC+AGG | 0.424134 | 5_4:+9310922 | Msa0835900:CDS |
| AGGAGAGAGATGTGCAGGGG+AGG | 0.437578 | 5_4:+9310719 | Msa0835900:CDS |
| TGGAGAGGAGAGAGATGTGC+AGG | 0.442889 | 5_4:+9310714 | Msa0835900:CDS |
| TTCCTTCTCAAGACTATCAA+TGG | 0.443572 | 5_4:-9311050 | None:intergenic |
| TACTGCAAACCATGCAAATC+CGG | 0.449249 | 5_4:+9310853 | Msa0835900:CDS |
| TATGCTTACTGCTGATCTAC+AGG | 0.453875 | 5_4:+9311308 | Msa0835900:CDS |
| ACCTCAGCAATGGGGCTCAA+TGG | 0.463460 | 5_4:-9311339 | None:intergenic |
| GTTTCGAATGTTCACCATAA+CGG | 0.473409 | 5_4:+9311471 | Msa0835900:CDS |
| GTAGATCTGAAATCCTCTCT+TGG | 0.479564 | 5_4:+9309445 | Msa0835900:CDS |
| GTGCCAGCAGCATCAACCTC+AGG | 0.484253 | 5_4:-9311414 | None:intergenic |
| GTAGAACCACCCTTGTTTGA+GGG | 0.498601 | 5_4:-9310779 | None:intergenic |
| AGTAGAACCACCCTTGTTTG+AGG | 0.504441 | 5_4:-9310780 | None:intergenic |
| CAACAAACTCAAAATCACTA+AGG | 0.505654 | 5_4:+9309770 | Msa0835900:CDS |
| CTCCTCAGAAACCTCAGCAA+TGG | 0.518364 | 5_4:-9311349 | None:intergenic |
| AGCTGCAGCAACAGTGGCGA+CGG | 0.519544 | 5_4:-9310903 | None:intergenic |
| TGATGACAATGGATCTGAGT+TGG | 0.524539 | 5_4:+9311272 | Msa0835900:CDS |
| ATCAAGAAGCTGACAATGAA+CGG | 0.527675 | 5_4:-9309649 | None:intergenic |
| CGGTGGTTGCAAAAGCTGCT+AGG | 0.530783 | 5_4:+9310873 | Msa0835900:CDS |
| CTGTTAATTCTGGACAGCAC+AGG | 0.531391 | 5_4:+9309981 | Msa0835900:CDS |
| TGGAATTGTTCCGATGCATA+AGG | 0.531970 | 5_4:+9309683 | Msa0835900:CDS |
| GCATATTGAGGTTAGCAAGC+TGG | 0.533221 | 5_4:+9309898 | Msa0835900:intron |
| CCCCATTGCTGAGGTTTCTG+AGG | 0.538400 | 5_4:+9311347 | Msa0835900:CDS |
| AGCAGCATCAACCTCAGGGT+TGG | 0.539714 | 5_4:-9311409 | None:intergenic |
| CACTCTCAACCCTCAAACAA+GGG | 0.547676 | 5_4:+9310770 | Msa0835900:CDS |
| CGAGCAGTGTGGGAAGATTG+AGG | 0.547920 | 5_4:-9310815 | None:intergenic |
| ATCATTCCTTCGAGCAGTGT+GGG | 0.553545 | 5_4:-9310825 | None:intergenic |
| TTGCAACCACCGGATTTGCA+TGG | 0.557039 | 5_4:-9310862 | None:intergenic |
| ACACTCTCAACCCTCAAACA+AGG | 0.557498 | 5_4:+9310769 | Msa0835900:CDS |
| GGAGAGGAGAGAGATGTGCA+GGG | 0.562837 | 5_4:+9310715 | Msa0835900:CDS |
| GCCATTGAGCCCCATTGCTG+AGG | 0.565737 | 5_4:+9311338 | Msa0835900:CDS |
| CAATCTCTCCAAAGTCGAAG+AGG | 0.568906 | 5_4:+9309488 | Msa0835900:CDS |
| TAGAAATTCACCTTATGCAT+CGG | 0.573560 | 5_4:-9309693 | None:intergenic |
| CACATCTCTCTCCTCTCCAA+AGG | 0.574177 | 5_4:-9310710 | None:intergenic |
| GAGAGGAGAGAGATGTGCAG+GGG | 0.575095 | 5_4:+9310716 | Msa0835900:CDS |
| GAGGTTAGCAAGCTGGTGAA+AGG | 0.576068 | 5_4:+9309905 | Msa0835900:CDS |
| AGTACCTGTTGATCATATGC+AGG | 0.577474 | 5_4:-9310926 | None:intergenic |
| GGTCACCTCTCATGATCTGA+AGG | 0.580315 | 5_4:+9311493 | Msa0835900:CDS |
| ATCCATTGATAGTCTTGAGA+AGG | 0.585036 | 5_4:+9311048 | Msa0835900:CDS |
| ATCATAGCTATATTTCTGGA+TGG | 0.588246 | 5_4:-9311656 | None:intergenic |
| ACATCAGAAAGCCTTCGTCT+AGG | 0.591311 | 5_4:-9311450 | None:intergenic |
| TCCTGAAGTAGAACATTCAC+CGG | 0.595180 | 5_4:+9311123 | Msa0835900:CDS |
| TCAGTTATAATCCTTTGGAG+AGG | 0.609241 | 5_4:+9310699 | Msa0835900:intron |
| GCTGGTGAAAGGAAGACCGT+TGG | 0.609936 | 5_4:+9309916 | Msa0835900:CDS |
| AATCTTCCCACACTGCTCGA+AGG | 0.610802 | 5_4:+9310819 | Msa0835900:CDS |
| CACAAGCCAAGAAATAACAC+TGG | 0.613143 | 5_4:-9311701 | None:intergenic |
| TGCCAGCAGCATCAACCTCA+GGG | 0.613718 | 5_4:-9311413 | None:intergenic |
| TGCAGGAGCTGCAGCAACAG+TGG | 0.616795 | 5_4:-9310909 | None:intergenic |
| TAATCCAGAAGTATAGCTGT+TGG | 0.622454 | 5_4:+9311627 | Msa0835900:three_prime_UTR |
| ATGGACACTGCATACTTCGT+CGG | 0.622514 | 5_4:+9309423 | Msa0835900:CDS |
| CATCATTCCTTCGAGCAGTG+TGG | 0.625952 | 5_4:-9310826 | None:intergenic |
| CGGAACAATTCCAGGATGAG+CGG | 0.629441 | 5_4:-9309673 | None:intergenic |
| ATAATTTGTCTCCTAGACGA+AGG | 0.644751 | 5_4:+9311439 | Msa0835900:CDS |
| TGCAAACCATGCAAATCCGG+TGG | 0.660574 | 5_4:+9310856 | Msa0835900:CDS |
| GAGTTGAATTGATCCAAGAG+AGG | 0.661001 | 5_4:-9309458 | None:intergenic |
| TTGTATGCTACTGATGACAA+TGG | 0.664708 | 5_4:+9311261 | Msa0835900:CDS |
| ATAATCTGGAGTTCATGCAA+TGG | 0.681963 | 5_4:+9309939 | Msa0835900:CDS |
| TCTCAACCCTCAAACAAGGG+TGG | 0.685605 | 5_4:+9310773 | Msa0835900:CDS |
| CCTCAGAAACCTCAGCAATG+GGG | 0.699654 | 5_4:-9311347 | None:intergenic |
| AAAGAACTTTGCCAACCCTG+AGG | 0.702193 | 5_4:+9311398 | Msa0835900:CDS |
| ATGAACTCCAGATTATCCAA+CGG | 0.710109 | 5_4:-9309932 | None:intergenic |
| AGGGTGGTTCTACTTCACAC+AGG | 0.720858 | 5_4:+9310789 | Msa0835900:CDS |
| GCAGTGTGGGAAGATTGAGG+AGG | 0.731744 | 5_4:-9310812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTAAGAAAATC+AGG | - | chr5_4:9309863-9309882 | None:intergenic | 10.0% |
| !!! | TTATTTTTCATTATTTTTGT+TGG | + | chr5_4:9311743-9311762 | Msa0835900:three_prime_UTR | 10.0% |
| !! | AAAAAAAAATTAAGAAAATC+AGG | - | chr5_4:9309863-9309882 | None:intergenic | 10.0% |
| !!! | TTATTTTTCATTATTTTTGT+TGG | + | chr5_4:9311743-9311762 | Msa0835900:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTTTCTTCTCTAA+CGG | - | chr5_4:9309344-9309363 | None:intergenic | 15.0% |
| !! | AAAATTGAAGAAAATTGAAT+CGG | - | chr5_4:9309525-9309544 | None:intergenic | 15.0% |
| !!! | TATCTTTGAAATTGATAATT+AGG | + | chr5_4:9310093-9310112 | Msa0835900:intron | 15.0% |
| !! | TATTAATTATATTGGATTTG+AGG | + | chr5_4:9310507-9310526 | Msa0835900:intron | 15.0% |
| !!! | GTTTGATTAGTTTAAAATTA+AGG | + | chr5_4:9310632-9310651 | Msa0835900:intron | 15.0% |
| !!! | ATTAAGGTATATTTTGTAAT+TGG | + | chr5_4:9310648-9310667 | Msa0835900:intron | 15.0% |
| !!! | ATTGATTTATGTTATGAATA+TGG | + | chr5_4:9311589-9311608 | Msa0835900:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTTCTTCTCTAA+CGG | - | chr5_4:9309344-9309363 | None:intergenic | 15.0% |
| !! | AAAATTGAAGAAAATTGAAT+CGG | - | chr5_4:9309525-9309544 | None:intergenic | 15.0% |
| !!! | TATCTTTGAAATTGATAATT+AGG | + | chr5_4:9310093-9310112 | Msa0835900:intron | 15.0% |
| !! | TATTAATTATATTGGATTTG+AGG | + | chr5_4:9310507-9310526 | Msa0835900:intron | 15.0% |
| !!! | GTTTGATTAGTTTAAAATTA+AGG | + | chr5_4:9310632-9310651 | Msa0835900:intron | 15.0% |
| !!! | ATTAAGGTATATTTTGTAAT+TGG | + | chr5_4:9310648-9310667 | Msa0835900:intron | 15.0% |
| !!! | ATTGATTTATGTTATGAATA+TGG | + | chr5_4:9311589-9311608 | Msa0835900:three_prime_UTR | 15.0% |
| !!! | TTTTTCGTTGATTTTGTTTT+AGG | + | chr5_4:9309550-9309569 | Msa0835900:intron | 20.0% |
| !!! | TGAATTGTGAAATTTTGTTT+AGG | + | chr5_4:9309614-9309633 | Msa0835900:intron | 20.0% |
| !! | AAATTAAGAAAATCAGGAAT+CGG | - | chr5_4:9309857-9309876 | None:intergenic | 20.0% |
| !!! | AAATTGATAATTAGGTCTTA+TGG | + | chr5_4:9310101-9310120 | Msa0835900:intron | 20.0% |
| !! | GTAAATGGTAATAATTAGAT+TGG | + | chr5_4:9310216-9310235 | Msa0835900:intron | 20.0% |
| !! | GATATCGGTATTAATTATAT+TGG | + | chr5_4:9310499-9310518 | Msa0835900:intron | 20.0% |
| !!! | GATATTGGTTATACTTATAT+TGG | + | chr5_4:9310595-9310614 | Msa0835900:intron | 20.0% |
| !! | TTATACTTATATTGGATTTG+AGG | + | chr5_4:9310603-9310622 | Msa0835900:intron | 20.0% |
| !! | ATGTTATGAATATGGTTATA+TGG | + | chr5_4:9311597-9311616 | Msa0835900:three_prime_UTR | 20.0% |
| !! | TATAATCATAGCTATATTTC+TGG | - | chr5_4:9311663-9311682 | None:intergenic | 20.0% |
| !!! | TTTTTCGTTGATTTTGTTTT+AGG | + | chr5_4:9309550-9309569 | Msa0835900:intron | 20.0% |
| !!! | TGAATTGTGAAATTTTGTTT+AGG | + | chr5_4:9309614-9309633 | Msa0835900:intron | 20.0% |
| !! | AAATTAAGAAAATCAGGAAT+CGG | - | chr5_4:9309857-9309876 | None:intergenic | 20.0% |
| !!! | AAATTGATAATTAGGTCTTA+TGG | + | chr5_4:9310101-9310120 | Msa0835900:intron | 20.0% |
| !! | GTAAATGGTAATAATTAGAT+TGG | + | chr5_4:9310216-9310235 | Msa0835900:intron | 20.0% |
| !! | GATATCGGTATTAATTATAT+TGG | + | chr5_4:9310499-9310518 | Msa0835900:intron | 20.0% |
| !!! | GATATTGGTTATACTTATAT+TGG | + | chr5_4:9310595-9310614 | Msa0835900:intron | 20.0% |
| !! | TTATACTTATATTGGATTTG+AGG | + | chr5_4:9310603-9310622 | Msa0835900:intron | 20.0% |
| !! | ATGTTATGAATATGGTTATA+TGG | + | chr5_4:9311597-9311616 | Msa0835900:three_prime_UTR | 20.0% |
| !! | TATAATCATAGCTATATTTC+TGG | - | chr5_4:9311663-9311682 | None:intergenic | 20.0% |
| ! | TGAGATGATTCAGAATTATA+AGG | + | chr5_4:9309731-9309750 | Msa0835900:CDS | 25.0% |
| !! | CTAAGGTAAATTTCGATTTT+CGG | + | chr5_4:9309787-9309806 | Msa0835900:intron | 25.0% |
| !! | TCAGCAAAAAATTTAGAGTA+AGG | - | chr5_4:9310016-9310035 | None:intergenic | 25.0% |
| !! | AATTTCATGCAAATGTTTTG+AGG | + | chr5_4:9310177-9310196 | Msa0835900:intron | 25.0% |
| ! | TAATGATCATATTGGATTTG+AGG | + | chr5_4:9310408-9310427 | Msa0835900:intron | 25.0% |
| !!! | TCAAAGTCTTGTTTTGATAT+CGG | + | chr5_4:9310484-9310503 | Msa0835900:intron | 25.0% |
| !!! | TCAGAGTATTGTTTTGATAT+TGG | + | chr5_4:9310580-9310599 | Msa0835900:intron | 25.0% |
| !! | GGTATATTTTGTAATTGGAT+TGG | + | chr5_4:9310653-9310672 | Msa0835900:intron | 25.0% |
| !! | ATTTTTACTTTGCAAAACTG+AGG | + | chr5_4:9311077-9311096 | Msa0835900:CDS | 25.0% |
| !! | TTTTTACTTTGCAAAACTGA+GGG | + | chr5_4:9311078-9311097 | Msa0835900:CDS | 25.0% |
| !! | TTGAAATTGGTAATTGTTGA+TGG | + | chr5_4:9311178-9311197 | Msa0835900:intron | 25.0% |
| !! | TGAAATTGGTAATTGTTGAT+GGG | + | chr5_4:9311179-9311198 | Msa0835900:intron | 25.0% |
| !!! | GTGAATTTTGTTTATGATTC+AGG | + | chr5_4:9311215-9311234 | Msa0835900:intron | 25.0% |
| !! | TTAGAGGAAGAAAACTATTT+TGG | + | chr5_4:9311521-9311540 | Msa0835900:three_prime_UTR | 25.0% |
| !!! | TATAATCCAGTGTTATTTCT+TGG | + | chr5_4:9311695-9311714 | Msa0835900:three_prime_UTR | 25.0% |
| ! | TGAGATGATTCAGAATTATA+AGG | + | chr5_4:9309731-9309750 | Msa0835900:CDS | 25.0% |
| !! | CTAAGGTAAATTTCGATTTT+CGG | + | chr5_4:9309787-9309806 | Msa0835900:intron | 25.0% |
| !! | TCAGCAAAAAATTTAGAGTA+AGG | - | chr5_4:9310016-9310035 | None:intergenic | 25.0% |
| !! | AATTTCATGCAAATGTTTTG+AGG | + | chr5_4:9310177-9310196 | Msa0835900:intron | 25.0% |
| ! | TAATGATCATATTGGATTTG+AGG | + | chr5_4:9310408-9310427 | Msa0835900:intron | 25.0% |
| !!! | TCAAAGTCTTGTTTTGATAT+CGG | + | chr5_4:9310484-9310503 | Msa0835900:intron | 25.0% |
| !!! | TCAGAGTATTGTTTTGATAT+TGG | + | chr5_4:9310580-9310599 | Msa0835900:intron | 25.0% |
| !! | GGTATATTTTGTAATTGGAT+TGG | + | chr5_4:9310653-9310672 | Msa0835900:intron | 25.0% |
| !! | ATTTTTACTTTGCAAAACTG+AGG | + | chr5_4:9311077-9311096 | Msa0835900:CDS | 25.0% |
| !! | TTTTTACTTTGCAAAACTGA+GGG | + | chr5_4:9311078-9311097 | Msa0835900:CDS | 25.0% |
| !! | TTGAAATTGGTAATTGTTGA+TGG | + | chr5_4:9311178-9311197 | Msa0835900:intron | 25.0% |
| !! | TGAAATTGGTAATTGTTGAT+GGG | + | chr5_4:9311179-9311198 | Msa0835900:intron | 25.0% |
| !!! | GTGAATTTTGTTTATGATTC+AGG | + | chr5_4:9311215-9311234 | Msa0835900:intron | 25.0% |
| !! | TTAGAGGAAGAAAACTATTT+TGG | + | chr5_4:9311521-9311540 | Msa0835900:three_prime_UTR | 25.0% |
| !!! | TATAATCCAGTGTTATTTCT+TGG | + | chr5_4:9311695-9311714 | Msa0835900:three_prime_UTR | 25.0% |
| GAAAATTGAATCGGAGAAAT+TGG | - | chr5_4:9309516-9309535 | None:intergenic | 30.0% | |
| !! | AATTTTGTTTAGGCTTGTTC+TGG | + | chr5_4:9309624-9309643 | Msa0835900:intron | 30.0% |
| TAGAAATTCACCTTATGCAT+CGG | - | chr5_4:9309696-9309715 | None:intergenic | 30.0% | |
| CAACAAACTCAAAATCACTA+AGG | + | chr5_4:9309770-9309789 | Msa0835900:CDS | 30.0% | |
| TACTGTGATTCTGTTAATTC+TGG | + | chr5_4:9309971-9309990 | Msa0835900:CDS | 30.0% | |
| ! | TGATAATTAGGTCTTATGGT+TGG | + | chr5_4:9310105-9310124 | Msa0835900:intron | 30.0% |
| !!! | CGTGTTTTGTTATTGGTAAA+TGG | + | chr5_4:9310201-9310220 | Msa0835900:intron | 30.0% |
| AAGTTACTGAATGTTGAACA+AGG | + | chr5_4:9310273-9310292 | Msa0835900:intron | 30.0% | |
| !! | GGTATTGGTAATGATCATAT+TGG | + | chr5_4:9310400-9310419 | Msa0835900:intron | 30.0% |
| !!! | TATTTTGTAATTGGATTGGC+TGG | + | chr5_4:9310657-9310676 | Msa0835900:intron | 30.0% |
| TCGTTTCAGTTATAATCCTT+TGG | + | chr5_4:9310694-9310713 | Msa0835900:intron | 30.0% | |
| ACTTAAGGTGATACAGATAA+CGG | + | chr5_4:9311015-9311034 | Msa0835900:intron | 30.0% | |
| AGAGTTTACAAGCAAAATAC+CGG | - | chr5_4:9311145-9311164 | None:intergenic | 30.0% | |
| !! | TCACTTACGAGTATTGAAAT+TGG | + | chr5_4:9311165-9311184 | Msa0835900:intron | 30.0% |
| TGATCTGAAGGAAAAATTAG+AGG | + | chr5_4:9311505-9311524 | Msa0835900:exon | 30.0% | |
| !! | ATCATAGCTATATTTCTGGA+TGG | - | chr5_4:9311659-9311678 | None:intergenic | 30.0% |
| GAAAATTGAATCGGAGAAAT+TGG | - | chr5_4:9309516-9309535 | None:intergenic | 30.0% | |
| !! | AATTTTGTTTAGGCTTGTTC+TGG | + | chr5_4:9309624-9309643 | Msa0835900:intron | 30.0% |
| TAGAAATTCACCTTATGCAT+CGG | - | chr5_4:9309696-9309715 | None:intergenic | 30.0% | |
| CAACAAACTCAAAATCACTA+AGG | + | chr5_4:9309770-9309789 | Msa0835900:CDS | 30.0% | |
| TACTGTGATTCTGTTAATTC+TGG | + | chr5_4:9309971-9309990 | Msa0835900:CDS | 30.0% | |
| ! | TGATAATTAGGTCTTATGGT+TGG | + | chr5_4:9310105-9310124 | Msa0835900:intron | 30.0% |
| !!! | CGTGTTTTGTTATTGGTAAA+TGG | + | chr5_4:9310201-9310220 | Msa0835900:intron | 30.0% |
| AAGTTACTGAATGTTGAACA+AGG | + | chr5_4:9310273-9310292 | Msa0835900:intron | 30.0% | |
| !! | GGTATTGGTAATGATCATAT+TGG | + | chr5_4:9310400-9310419 | Msa0835900:intron | 30.0% |
| !!! | TATTTTGTAATTGGATTGGC+TGG | + | chr5_4:9310657-9310676 | Msa0835900:intron | 30.0% |
| TCGTTTCAGTTATAATCCTT+TGG | + | chr5_4:9310694-9310713 | Msa0835900:intron | 30.0% | |
| ACTTAAGGTGATACAGATAA+CGG | + | chr5_4:9311015-9311034 | Msa0835900:intron | 30.0% | |
| AGAGTTTACAAGCAAAATAC+CGG | - | chr5_4:9311145-9311164 | None:intergenic | 30.0% | |
| !! | TCACTTACGAGTATTGAAAT+TGG | + | chr5_4:9311165-9311184 | Msa0835900:intron | 30.0% |
| TGATCTGAAGGAAAAATTAG+AGG | + | chr5_4:9311505-9311524 | Msa0835900:exon | 30.0% | |
| !! | ATCATAGCTATATTTCTGGA+TGG | - | chr5_4:9311659-9311678 | None:intergenic | 30.0% |
| AAAAGCGAAGCAGAGAAAAA+TGG | + | chr5_4:9309383-9309402 | Msa0835900:exon | 35.0% | |
| ATCAAGAAGCTGACAATGAA+CGG | - | chr5_4:9309652-9309671 | None:intergenic | 35.0% | |
| ! | TTGATTTTCGCAGCATATTG+AGG | + | chr5_4:9309886-9309905 | Msa0835900:intron | 35.0% |
| ATGAACTCCAGATTATCCAA+CGG | - | chr5_4:9309935-9309954 | None:intergenic | 35.0% | |
| ! | ATAATCTGGAGTTCATGCAA+TGG | + | chr5_4:9309939-9309958 | Msa0835900:CDS | 35.0% |
| TGATGCTAATCTTAATTGCG+TGG | + | chr5_4:9310064-9310083 | Msa0835900:intron | 35.0% | |
| !! | TTGAGGTCGTGTTTTGTTAT+TGG | + | chr5_4:9310194-9310213 | Msa0835900:intron | 35.0% |
| ! | TGAACAAGGTCTTGATAACT+AGG | + | chr5_4:9310287-9310306 | Msa0835900:intron | 35.0% |
| GCTTGATAAGTTCTTAACTG+AGG | + | chr5_4:9310437-9310456 | Msa0835900:intron | 35.0% | |
| !! | TCAAAACTGAGTTTGCTGAT+TGG | + | chr5_4:9310547-9310566 | Msa0835900:intron | 35.0% |
| ! | TCAGTTATAATCCTTTGGAG+AGG | + | chr5_4:9310699-9310718 | Msa0835900:intron | 35.0% |
| GTGCATAGATCTAACACTTA+AGG | + | chr5_4:9311000-9311019 | Msa0835900:intron | 35.0% | |
| ! | ATCCATTGATAGTCTTGAGA+AGG | + | chr5_4:9311048-9311067 | Msa0835900:CDS | 35.0% |
| TTCCTTCTCAAGACTATCAA+TGG | - | chr5_4:9311053-9311072 | None:intergenic | 35.0% | |
| TTGTATGCTACTGATGACAA+TGG | + | chr5_4:9311261-9311280 | Msa0835900:CDS | 35.0% | |
| TCGTCTAGGAGACAAATTAT+TGG | - | chr5_4:9311439-9311458 | None:intergenic | 35.0% | |
| ! | ATAATTTGTCTCCTAGACGA+AGG | + | chr5_4:9311439-9311458 | Msa0835900:CDS | 35.0% |
| GTTTCGAATGTTCACCATAA+CGG | + | chr5_4:9311471-9311490 | Msa0835900:CDS | 35.0% | |
| TTTCGAATGTTCACCATAAC+GGG | + | chr5_4:9311472-9311491 | Msa0835900:CDS | 35.0% | |
| ! | TTTTTCCTTCAGATCATGAG+AGG | - | chr5_4:9311501-9311520 | None:intergenic | 35.0% |
| ! | TAATCCAGAAGTATAGCTGT+TGG | + | chr5_4:9311627-9311646 | Msa0835900:three_prime_UTR | 35.0% |
| ATTACCAACAGCTATACTTC+TGG | - | chr5_4:9311634-9311653 | None:intergenic | 35.0% | |
| AAAAGCGAAGCAGAGAAAAA+TGG | + | chr5_4:9309383-9309402 | Msa0835900:exon | 35.0% | |
| ATCAAGAAGCTGACAATGAA+CGG | - | chr5_4:9309652-9309671 | None:intergenic | 35.0% | |
| ! | TTGATTTTCGCAGCATATTG+AGG | + | chr5_4:9309886-9309905 | Msa0835900:intron | 35.0% |
| ATGAACTCCAGATTATCCAA+CGG | - | chr5_4:9309935-9309954 | None:intergenic | 35.0% | |
| ! | ATAATCTGGAGTTCATGCAA+TGG | + | chr5_4:9309939-9309958 | Msa0835900:CDS | 35.0% |
| TGATGCTAATCTTAATTGCG+TGG | + | chr5_4:9310064-9310083 | Msa0835900:intron | 35.0% | |
| !! | TTGAGGTCGTGTTTTGTTAT+TGG | + | chr5_4:9310194-9310213 | Msa0835900:intron | 35.0% |
| ! | TGAACAAGGTCTTGATAACT+AGG | + | chr5_4:9310287-9310306 | Msa0835900:intron | 35.0% |
| GCTTGATAAGTTCTTAACTG+AGG | + | chr5_4:9310437-9310456 | Msa0835900:intron | 35.0% | |
| !! | TCAAAACTGAGTTTGCTGAT+TGG | + | chr5_4:9310547-9310566 | Msa0835900:intron | 35.0% |
| ! | TCAGTTATAATCCTTTGGAG+AGG | + | chr5_4:9310699-9310718 | Msa0835900:intron | 35.0% |
| GTGCATAGATCTAACACTTA+AGG | + | chr5_4:9311000-9311019 | Msa0835900:intron | 35.0% | |
| ! | ATCCATTGATAGTCTTGAGA+AGG | + | chr5_4:9311048-9311067 | Msa0835900:CDS | 35.0% |
| TTCCTTCTCAAGACTATCAA+TGG | - | chr5_4:9311053-9311072 | None:intergenic | 35.0% | |
| TTGTATGCTACTGATGACAA+TGG | + | chr5_4:9311261-9311280 | Msa0835900:CDS | 35.0% | |
| TCGTCTAGGAGACAAATTAT+TGG | - | chr5_4:9311439-9311458 | None:intergenic | 35.0% | |
| ! | ATAATTTGTCTCCTAGACGA+AGG | + | chr5_4:9311439-9311458 | Msa0835900:CDS | 35.0% |
| GTTTCGAATGTTCACCATAA+CGG | + | chr5_4:9311471-9311490 | Msa0835900:CDS | 35.0% | |
| TTTCGAATGTTCACCATAAC+GGG | + | chr5_4:9311472-9311491 | Msa0835900:CDS | 35.0% | |
| ! | TTTTTCCTTCAGATCATGAG+AGG | - | chr5_4:9311501-9311520 | None:intergenic | 35.0% |
| ! | TAATCCAGAAGTATAGCTGT+TGG | + | chr5_4:9311627-9311646 | Msa0835900:three_prime_UTR | 35.0% |
| ATTACCAACAGCTATACTTC+TGG | - | chr5_4:9311634-9311653 | None:intergenic | 35.0% | |
| AGAAAAATGGCGACGAACAT+TGG | + | chr5_4:9309396-9309415 | Msa0835900:exon | 40.0% | |
| ! | GTAGATCTGAAATCCTCTCT+TGG | + | chr5_4:9309445-9309464 | Msa0835900:CDS | 40.0% |
| GAGTTGAATTGATCCAAGAG+AGG | - | chr5_4:9309461-9309480 | None:intergenic | 40.0% | |
| AATTGGAACCTCTTCGACTT+TGG | - | chr5_4:9309499-9309518 | None:intergenic | 40.0% | |
| TTATGCATCGGAACAATTCC+AGG | - | chr5_4:9309684-9309703 | None:intergenic | 40.0% | |
| TGGAATTGTTCCGATGCATA+AGG | + | chr5_4:9309683-9309702 | Msa0835900:CDS | 40.0% | |
| ACTGTATCGAAGTCTTCTTG+TGG | + | chr5_4:9310379-9310398 | Msa0835900:intron | 40.0% | |
| TCGAAGTCTTCTTGTGGTAT+TGG | + | chr5_4:9310385-9310404 | Msa0835900:intron | 40.0% | |
| TACTGCAAACCATGCAAATC+CGG | + | chr5_4:9310853-9310872 | Msa0835900:CDS | 40.0% | |
| AGTACCTGTTGATCATATGC+AGG | - | chr5_4:9310929-9310948 | None:intergenic | 40.0% | |
| TCCTGAAGTAGAACATTCAC+CGG | + | chr5_4:9311123-9311142 | Msa0835900:CDS | 40.0% | |
| TGATGACAATGGATCTGAGT+TGG | + | chr5_4:9311272-9311291 | Msa0835900:CDS | 40.0% | |
| TATGCTTACTGCTGATCTAC+AGG | + | chr5_4:9311308-9311327 | Msa0835900:CDS | 40.0% | |
| CACAAGCCAAGAAATAACAC+TGG | - | chr5_4:9311704-9311723 | None:intergenic | 40.0% | |
| AGAAAAATGGCGACGAACAT+TGG | + | chr5_4:9309396-9309415 | Msa0835900:exon | 40.0% | |
| ! | GTAGATCTGAAATCCTCTCT+TGG | + | chr5_4:9309445-9309464 | Msa0835900:CDS | 40.0% |
| GAGTTGAATTGATCCAAGAG+AGG | - | chr5_4:9309461-9309480 | None:intergenic | 40.0% | |
| AATTGGAACCTCTTCGACTT+TGG | - | chr5_4:9309499-9309518 | None:intergenic | 40.0% | |
| TTATGCATCGGAACAATTCC+AGG | - | chr5_4:9309684-9309703 | None:intergenic | 40.0% | |
| TGGAATTGTTCCGATGCATA+AGG | + | chr5_4:9309683-9309702 | Msa0835900:CDS | 40.0% | |
| ACTGTATCGAAGTCTTCTTG+TGG | + | chr5_4:9310379-9310398 | Msa0835900:intron | 40.0% | |
| TCGAAGTCTTCTTGTGGTAT+TGG | + | chr5_4:9310385-9310404 | Msa0835900:intron | 40.0% | |
| TACTGCAAACCATGCAAATC+CGG | + | chr5_4:9310853-9310872 | Msa0835900:CDS | 40.0% | |
| AGTACCTGTTGATCATATGC+AGG | - | chr5_4:9310929-9310948 | None:intergenic | 40.0% | |
| TCCTGAAGTAGAACATTCAC+CGG | + | chr5_4:9311123-9311142 | Msa0835900:CDS | 40.0% | |
| TGATGACAATGGATCTGAGT+TGG | + | chr5_4:9311272-9311291 | Msa0835900:CDS | 40.0% | |
| TATGCTTACTGCTGATCTAC+AGG | + | chr5_4:9311308-9311327 | Msa0835900:CDS | 40.0% | |
| CACAAGCCAAGAAATAACAC+TGG | - | chr5_4:9311704-9311723 | None:intergenic | 40.0% | |
| GGCGACGAACATTGGAATAA+TGG | + | chr5_4:9309404-9309423 | Msa0835900:CDS | 45.0% | |
| ATGGACACTGCATACTTCGT+CGG | + | chr5_4:9309423-9309442 | Msa0835900:CDS | 45.0% | |
| CAATCTCTCCAAAGTCGAAG+AGG | + | chr5_4:9309488-9309507 | Msa0835900:CDS | 45.0% | |
| ! | TTCGATTTTCGGTTGCGTTC+TGG | + | chr5_4:9309798-9309817 | Msa0835900:intron | 45.0% |
| GCATATTGAGGTTAGCAAGC+TGG | + | chr5_4:9309898-9309917 | Msa0835900:intron | 45.0% | |
| AGGAAGACCGTTGGATAATC+TGG | + | chr5_4:9309925-9309944 | Msa0835900:CDS | 45.0% | |
| CTGTTAATTCTGGACAGCAC+AGG | + | chr5_4:9309981-9310000 | Msa0835900:CDS | 45.0% | |
| ACACTCTCAACCCTCAAACA+AGG | + | chr5_4:9310769-9310788 | Msa0835900:CDS | 45.0% | |
| CACTCTCAACCCTCAAACAA+GGG | + | chr5_4:9310770-9310789 | Msa0835900:CDS | 45.0% | |
| ! | GTAGAACCACCCTTGTTTGA+GGG | - | chr5_4:9310782-9310801 | None:intergenic | 45.0% |
| ! | AGTAGAACCACCCTTGTTTG+AGG | - | chr5_4:9310783-9310802 | None:intergenic | 45.0% |
| ATCATTCCTTCGAGCAGTGT+GGG | - | chr5_4:9310828-9310847 | None:intergenic | 45.0% | |
| AGCTCCTGCATATGATCAAC+AGG | + | chr5_4:9310922-9310941 | Msa0835900:CDS | 45.0% | |
| ACCGGTGAATGTTCTACTTC+AGG | - | chr5_4:9311127-9311146 | None:intergenic | 45.0% | |
| TCCTCAGAAACCTCAGCAAT+GGG | - | chr5_4:9311351-9311370 | None:intergenic | 45.0% | |
| AAAGAACTTTGCCAACCCTG+AGG | + | chr5_4:9311398-9311417 | Msa0835900:CDS | 45.0% | |
| ACATCAGAAAGCCTTCGTCT+AGG | - | chr5_4:9311453-9311472 | None:intergenic | 45.0% | |
| GGCGACGAACATTGGAATAA+TGG | + | chr5_4:9309404-9309423 | Msa0835900:CDS | 45.0% | |
| ATGGACACTGCATACTTCGT+CGG | + | chr5_4:9309423-9309442 | Msa0835900:CDS | 45.0% | |
| CAATCTCTCCAAAGTCGAAG+AGG | + | chr5_4:9309488-9309507 | Msa0835900:CDS | 45.0% | |
| ! | TTCGATTTTCGGTTGCGTTC+TGG | + | chr5_4:9309798-9309817 | Msa0835900:intron | 45.0% |
| GCATATTGAGGTTAGCAAGC+TGG | + | chr5_4:9309898-9309917 | Msa0835900:intron | 45.0% | |
| AGGAAGACCGTTGGATAATC+TGG | + | chr5_4:9309925-9309944 | Msa0835900:CDS | 45.0% | |
| CTGTTAATTCTGGACAGCAC+AGG | + | chr5_4:9309981-9310000 | Msa0835900:CDS | 45.0% | |
| ACACTCTCAACCCTCAAACA+AGG | + | chr5_4:9310769-9310788 | Msa0835900:CDS | 45.0% | |
| CACTCTCAACCCTCAAACAA+GGG | + | chr5_4:9310770-9310789 | Msa0835900:CDS | 45.0% | |
| ! | GTAGAACCACCCTTGTTTGA+GGG | - | chr5_4:9310782-9310801 | None:intergenic | 45.0% |
| ! | AGTAGAACCACCCTTGTTTG+AGG | - | chr5_4:9310783-9310802 | None:intergenic | 45.0% |
| ATCATTCCTTCGAGCAGTGT+GGG | - | chr5_4:9310828-9310847 | None:intergenic | 45.0% | |
| AGCTCCTGCATATGATCAAC+AGG | + | chr5_4:9310922-9310941 | Msa0835900:CDS | 45.0% | |
| ACCGGTGAATGTTCTACTTC+AGG | - | chr5_4:9311127-9311146 | None:intergenic | 45.0% | |
| TCCTCAGAAACCTCAGCAAT+GGG | - | chr5_4:9311351-9311370 | None:intergenic | 45.0% | |
| AAAGAACTTTGCCAACCCTG+AGG | + | chr5_4:9311398-9311417 | Msa0835900:CDS | 45.0% | |
| ACATCAGAAAGCCTTCGTCT+AGG | - | chr5_4:9311453-9311472 | None:intergenic | 45.0% | |
| CGGAACAATTCCAGGATGAG+CGG | - | chr5_4:9309676-9309695 | None:intergenic | 50.0% | |
| GAGGTTAGCAAGCTGGTGAA+AGG | + | chr5_4:9309905-9309924 | Msa0835900:CDS | 50.0% | |
| CACATCTCTCTCCTCTCCAA+AGG | - | chr5_4:9310713-9310732 | None:intergenic | 50.0% | |
| TCTCAACCCTCAAACAAGGG+TGG | + | chr5_4:9310773-9310792 | Msa0835900:CDS | 50.0% | |
| ! | AGGGTGGTTCTACTTCACAC+AGG | + | chr5_4:9310789-9310808 | Msa0835900:CDS | 50.0% |
| AATCTTCCCACACTGCTCGA+AGG | + | chr5_4:9310819-9310838 | Msa0835900:CDS | 50.0% | |
| CATCATTCCTTCGAGCAGTG+TGG | - | chr5_4:9310829-9310848 | None:intergenic | 50.0% | |
| TGCAAACCATGCAAATCCGG+TGG | + | chr5_4:9310856-9310875 | Msa0835900:CDS | 50.0% | |
| TTGCAACCACCGGATTTGCA+TGG | - | chr5_4:9310865-9310884 | None:intergenic | 50.0% | |
| ! | CTAGCAGCTTTTGCAACCAC+CGG | - | chr5_4:9310875-9310894 | None:intergenic | 50.0% |
| CCTCAGAAACCTCAGCAATG+GGG | - | chr5_4:9311350-9311369 | None:intergenic | 50.0% | |
| CTCCTCAGAAACCTCAGCAA+TGG | - | chr5_4:9311352-9311371 | None:intergenic | 50.0% | |
| TCATGAGAGGTGACCCGTTA+TGG | - | chr5_4:9311488-9311507 | None:intergenic | 50.0% | |
| GGTCACCTCTCATGATCTGA+AGG | + | chr5_4:9311493-9311512 | Msa0835900:CDS | 50.0% | |
| CGGAACAATTCCAGGATGAG+CGG | - | chr5_4:9309676-9309695 | None:intergenic | 50.0% | |
| GAGGTTAGCAAGCTGGTGAA+AGG | + | chr5_4:9309905-9309924 | Msa0835900:CDS | 50.0% | |
| CACATCTCTCTCCTCTCCAA+AGG | - | chr5_4:9310713-9310732 | None:intergenic | 50.0% | |
| TCTCAACCCTCAAACAAGGG+TGG | + | chr5_4:9310773-9310792 | Msa0835900:CDS | 50.0% | |
| ! | AGGGTGGTTCTACTTCACAC+AGG | + | chr5_4:9310789-9310808 | Msa0835900:CDS | 50.0% |
| AATCTTCCCACACTGCTCGA+AGG | + | chr5_4:9310819-9310838 | Msa0835900:CDS | 50.0% | |
| CATCATTCCTTCGAGCAGTG+TGG | - | chr5_4:9310829-9310848 | None:intergenic | 50.0% | |
| TGCAAACCATGCAAATCCGG+TGG | + | chr5_4:9310856-9310875 | Msa0835900:CDS | 50.0% | |
| TTGCAACCACCGGATTTGCA+TGG | - | chr5_4:9310865-9310884 | None:intergenic | 50.0% | |
| ! | CTAGCAGCTTTTGCAACCAC+CGG | - | chr5_4:9310875-9310894 | None:intergenic | 50.0% |
| CCTCAGAAACCTCAGCAATG+GGG | - | chr5_4:9311350-9311369 | None:intergenic | 50.0% | |
| CTCCTCAGAAACCTCAGCAA+TGG | - | chr5_4:9311352-9311371 | None:intergenic | 50.0% | |
| TCATGAGAGGTGACCCGTTA+TGG | - | chr5_4:9311488-9311507 | None:intergenic | 50.0% | |
| GGTCACCTCTCATGATCTGA+AGG | + | chr5_4:9311493-9311512 | Msa0835900:CDS | 50.0% | |
| CTTCTTGATGCCGCTCATCC+TGG | + | chr5_4:9309663-9309682 | Msa0835900:CDS | 55.0% | |
| GCTGGTGAAAGGAAGACCGT+TGG | + | chr5_4:9309916-9309935 | Msa0835900:CDS | 55.0% | |
| TGGAGAGGAGAGAGATGTGC+AGG | + | chr5_4:9310714-9310733 | Msa0835900:CDS | 55.0% | |
| GGAGAGGAGAGAGATGTGCA+GGG | + | chr5_4:9310715-9310734 | Msa0835900:CDS | 55.0% | |
| GAGAGGAGAGAGATGTGCAG+GGG | + | chr5_4:9310716-9310735 | Msa0835900:CDS | 55.0% | |
| GCAGTGTGGGAAGATTGAGG+AGG | - | chr5_4:9310815-9310834 | None:intergenic | 55.0% | |
| CGAGCAGTGTGGGAAGATTG+AGG | - | chr5_4:9310818-9310837 | None:intergenic | 55.0% | |
| CGGTGGTTGCAAAAGCTGCT+AGG | + | chr5_4:9310873-9310892 | Msa0835900:CDS | 55.0% | |
| ACCTCAGCAATGGGGCTCAA+TGG | - | chr5_4:9311342-9311361 | None:intergenic | 55.0% | |
| CCCCATTGCTGAGGTTTCTG+AGG | + | chr5_4:9311347-9311366 | Msa0835900:CDS | 55.0% | |
| AGCAGCATCAACCTCAGGGT+TGG | - | chr5_4:9311412-9311431 | None:intergenic | 55.0% | |
| !! | AACCCTGAGGTTGATGCTGC+TGG | + | chr5_4:9311411-9311430 | Msa0835900:CDS | 55.0% |
| TGCCAGCAGCATCAACCTCA+GGG | - | chr5_4:9311416-9311435 | None:intergenic | 55.0% | |
| CTTCTTGATGCCGCTCATCC+TGG | + | chr5_4:9309663-9309682 | Msa0835900:CDS | 55.0% | |
| GCTGGTGAAAGGAAGACCGT+TGG | + | chr5_4:9309916-9309935 | Msa0835900:CDS | 55.0% | |
| TGGAGAGGAGAGAGATGTGC+AGG | + | chr5_4:9310714-9310733 | Msa0835900:CDS | 55.0% | |
| GGAGAGGAGAGAGATGTGCA+GGG | + | chr5_4:9310715-9310734 | Msa0835900:CDS | 55.0% | |
| GAGAGGAGAGAGATGTGCAG+GGG | + | chr5_4:9310716-9310735 | Msa0835900:CDS | 55.0% | |
| GCAGTGTGGGAAGATTGAGG+AGG | - | chr5_4:9310815-9310834 | None:intergenic | 55.0% | |
| CGAGCAGTGTGGGAAGATTG+AGG | - | chr5_4:9310818-9310837 | None:intergenic | 55.0% | |
| CGGTGGTTGCAAAAGCTGCT+AGG | + | chr5_4:9310873-9310892 | Msa0835900:CDS | 55.0% | |
| ACCTCAGCAATGGGGCTCAA+TGG | - | chr5_4:9311342-9311361 | None:intergenic | 55.0% | |
| CCCCATTGCTGAGGTTTCTG+AGG | + | chr5_4:9311347-9311366 | Msa0835900:CDS | 55.0% | |
| AGCAGCATCAACCTCAGGGT+TGG | - | chr5_4:9311412-9311431 | None:intergenic | 55.0% | |
| !! | AACCCTGAGGTTGATGCTGC+TGG | + | chr5_4:9311411-9311430 | Msa0835900:CDS | 55.0% |
| TGCCAGCAGCATCAACCTCA+GGG | - | chr5_4:9311416-9311435 | None:intergenic | 55.0% | |
| AGGAGAGAGATGTGCAGGGG+AGG | + | chr5_4:9310719-9310738 | Msa0835900:CDS | 60.0% | |
| AGAGAGATGTGCAGGGGAGG+AGG | + | chr5_4:9310722-9310741 | Msa0835900:CDS | 60.0% | |
| AGCTGCAGCAACAGTGGCGA+CGG | - | chr5_4:9310906-9310925 | None:intergenic | 60.0% | |
| TGCAGGAGCTGCAGCAACAG+TGG | - | chr5_4:9310912-9310931 | None:intergenic | 60.0% | |
| GCCATTGAGCCCCATTGCTG+AGG | + | chr5_4:9311338-9311357 | Msa0835900:CDS | 60.0% | |
| GTGCCAGCAGCATCAACCTC+AGG | - | chr5_4:9311417-9311436 | None:intergenic | 60.0% | |
| AGGAGAGAGATGTGCAGGGG+AGG | + | chr5_4:9310719-9310738 | Msa0835900:CDS | 60.0% | |
| AGAGAGATGTGCAGGGGAGG+AGG | + | chr5_4:9310722-9310741 | Msa0835900:CDS | 60.0% | |
| AGCTGCAGCAACAGTGGCGA+CGG | - | chr5_4:9310906-9310925 | None:intergenic | 60.0% | |
| TGCAGGAGCTGCAGCAACAG+TGG | - | chr5_4:9310912-9310931 | None:intergenic | 60.0% | |
| GCCATTGAGCCCCATTGCTG+AGG | + | chr5_4:9311338-9311357 | Msa0835900:CDS | 60.0% | |
| GTGCCAGCAGCATCAACCTC+AGG | - | chr5_4:9311417-9311436 | None:intergenic | 60.0% | |
| GCAACAGTGGCGACGGCAGC+AGG | - | chr5_4:9310899-9310918 | None:intergenic | 70.0% | |
| GCAACAGTGGCGACGGCAGC+AGG | - | chr5_4:9310899-9310918 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9309333 | 9311775 | 9309333 | ID=Msa0835900;Name=Msa0835900 |
| chr5_4 | mRNA | 9309333 | 9311775 | 9309333 | ID=Msa0835900-mRNA-1;Parent=Msa0835900;Name=Msa0835900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=69|1|1|1|1|1|6|263|332 |
| chr5_4 | exon | 9309333 | 9309509 | 9309333 | ID=Msa0835900-mRNA-1:exon:4083;Parent=Msa0835900-mRNA-1 |
| chr5_4 | exon | 9309636 | 9309791 | 9309636 | ID=Msa0835900-mRNA-1:exon:4084;Parent=Msa0835900-mRNA-1 |
| chr5_4 | exon | 9309899 | 9310002 | 9309899 | ID=Msa0835900-mRNA-1:exon:4085;Parent=Msa0835900-mRNA-1 |
| chr5_4 | exon | 9310703 | 9310943 | 9310703 | ID=Msa0835900-mRNA-1:exon:4086;Parent=Msa0835900-mRNA-1 |
| chr5_4 | exon | 9311031 | 9311144 | 9311031 | ID=Msa0835900-mRNA-1:exon:4087;Parent=Msa0835900-mRNA-1 |
| chr5_4 | exon | 9311237 | 9311775 | 9311237 | ID=Msa0835900-mRNA-1:exon:4088;Parent=Msa0835900-mRNA-1 |
| chr5_4 | five_prime_UTR | 9309333 | 9309401 | 9309333 | ID=Msa0835900-mRNA-1:five_prime_utr;Parent=Msa0835900-mRNA-1 |
| chr5_4 | CDS | 9309402 | 9309509 | 9309402 | ID=Msa0835900-mRNA-1:cds;Parent=Msa0835900-mRNA-1 |
| chr5_4 | CDS | 9309636 | 9309791 | 9309636 | ID=Msa0835900-mRNA-1:cds;Parent=Msa0835900-mRNA-1 |
| chr5_4 | CDS | 9309899 | 9310002 | 9309899 | ID=Msa0835900-mRNA-1:cds;Parent=Msa0835900-mRNA-1 |
| chr5_4 | CDS | 9310703 | 9310943 | 9310703 | ID=Msa0835900-mRNA-1:cds;Parent=Msa0835900-mRNA-1 |
| chr5_4 | CDS | 9311031 | 9311144 | 9311031 | ID=Msa0835900-mRNA-1:cds;Parent=Msa0835900-mRNA-1 |
| chr5_4 | CDS | 9311237 | 9311512 | 9311237 | ID=Msa0835900-mRNA-1:cds;Parent=Msa0835900-mRNA-1 |
| chr5_4 | three_prime_UTR | 9311513 | 9311775 | 9311513 | ID=Msa0835900-mRNA-1:three_prime_utr;Parent=Msa0835900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
