Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756260 | XP_003611613.2 | 97.810 | 137 | 2 | 1 | 1 | 136 | 1 | 137 | 5.47e-93 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756260 | sp|Q8K2Y7|RM47_MOUSE | 50.562 | 89 | 43 | 1 | 29 | 116 | 63 | 151 | 1.53e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756260 | G7K3V1 | 97.810 | 137 | 2 | 1 | 1 | 136 | 1 | 137 | 2.61e-93 | 275 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0756260 | 0.802565 | 5.281894e-49 | -8.615850e-47 |
| Msa0027260 | Msa0756260 | 0.800604 | 1.333174e-48 | -8.615850e-47 |
| Msa0056470 | Msa0756260 | 0.801464 | 8.893153e-49 | -8.615850e-47 |
| Msa0662500 | Msa0756260 | 0.816794 | 4.602000e-52 | -8.615850e-47 |
| Msa0690150 | Msa0756260 | 0.810790 | 9.675207e-51 | -8.615850e-47 |
| Msa0692840 | Msa0756260 | 0.828181 | 1.036858e-54 | -8.615850e-47 |
| Msa0749760 | Msa0756260 | 0.811466 | 6.904969e-51 | -8.615850e-47 |
| Msa0750880 | Msa0756260 | 0.821177 | 4.637274e-53 | -8.615850e-47 |
| Msa0756260 | Msa0761940 | 0.801709 | 7.921554e-49 | -8.615850e-47 |
| Msa0756260 | Msa0784200 | 0.825681 | 4.104677e-54 | -8.615850e-47 |
| Msa0756260 | Msa0797880 | 0.883999 | 2.787732e-71 | -8.615850e-47 |
| Msa0756260 | Msa0818310 | 0.830443 | 2.928313e-55 | -8.615850e-47 |
| Msa0756260 | Msa0835420 | 0.889606 | 2.083545e-73 | -8.615850e-47 |
| Msa0756260 | Msa0841940 | 0.804505 | 2.091364e-49 | -8.615850e-47 |
| Msa0756260 | Msa0858770 | 0.836727 | 7.900817e-57 | -8.615850e-47 |
| Msa0756260 | Msa0902760 | 0.809671 | 1.686318e-50 | -8.615850e-47 |
| Msa0756260 | Msa0968590 | 0.823181 | 1.590376e-53 | -8.615850e-47 |
| Msa0756260 | Msa1013400 | 0.826384 | 2.794423e-54 | -8.615850e-47 |
| Msa0756260 | Msa1081150 | 0.834848 | 2.363285e-56 | -8.615850e-47 |
| Msa0756260 | Msa1093530 | 0.811342 | 7.344385e-51 | -8.615850e-47 |
| Msa0756260 | Msa1101600 | 0.802258 | 6.110846e-49 | -8.615850e-47 |
| Msa0756260 | Msa1126510 | 0.820861 | 5.483258e-53 | -8.615850e-47 |
| Msa0756260 | Msa1126770 | 0.803711 | 3.059338e-49 | -8.615850e-47 |
| Msa0756260 | Msa1165940 | 0.829321 | 5.495885e-55 | -8.615850e-47 |
| Msa0756260 | Msa1166860 | 0.811787 | 5.879258e-51 | -8.615850e-47 |
| Msa0756260 | Msa1218600 | 0.812144 | 4.913602e-51 | -8.615850e-47 |
| Msa0756260 | Msa1244600 | 0.808759 | 2.644272e-50 | -8.615850e-47 |
| Msa0756260 | Msa1251160 | 0.810167 | 1.318790e-50 | -8.615850e-47 |
| Msa0756260 | Msa1257510 | 0.837851 | 4.072477e-57 | -8.615850e-47 |
| Msa0756260 | Msa1267430 | 0.816304 | 5.923952e-52 | -8.615850e-47 |
| Msa0756260 | Msa1283170 | 0.802560 | 5.294502e-49 | -8.615850e-47 |
| Msa0756260 | Msa1353060 | 0.817049 | 4.034165e-52 | -8.615850e-47 |
| Msa0140820 | Msa0756260 | 0.807957 | 3.920621e-50 | -8.615850e-47 |
| Msa0199880 | Msa0756260 | 0.803584 | 3.251593e-49 | -8.615850e-47 |
| Msa0229760 | Msa0756260 | 0.805605 | 1.231238e-49 | -8.615850e-47 |
| Msa0387730 | Msa0756260 | 0.802486 | 5.484628e-49 | -8.615850e-47 |
| Msa0395820 | Msa0756260 | 0.820660 | 6.099250e-53 | -8.615850e-47 |
| Msa0432210 | Msa0756260 | 0.819987 | 8.701064e-53 | -8.615850e-47 |
| Msa0242410 | Msa0756260 | 0.829304 | 5.547343e-55 | -8.615850e-47 |
| Msa0273900 | Msa0756260 | 0.814560 | 1.447735e-51 | -8.615850e-47 |
| Msa0280610 | Msa0756260 | 0.824005 | 1.020262e-53 | -8.615850e-47 |
| Msa0300120 | Msa0756260 | 0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0518390 | Msa0756260 | 0.801938 | 7.110325e-49 | -8.615850e-47 |
| Msa0521050 | Msa0756260 | 0.808618 | 2.834521e-50 | -8.615850e-47 |
| Msa0529680 | Msa0756260 | 0.805425 | 1.342970e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756260 | MtrunA17_Chr5g0401391 | 97.810 | 137 | 2 | 1 | 1 | 136 | 1 | 137 | 5.04e-97 | 275 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756260 | AT1G07830.1 | 71.528 | 144 | 33 | 3 | 1 | 136 | 1 | 144 | 4.58e-67 | 199 |
Find 25 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATTGCGTCTGAAATCT+TGG | 0.295639 | 5_2:-10332884 | Msa0756260:CDS |
| CCCTCTTCCGGAGTTCTTTG+AGG | 0.397007 | 5_2:-10333099 | Msa0756260:CDS |
| GAGATGAAGAAAATGATAAA+TGG | 0.401349 | 5_2:-10332427 | Msa0756260:CDS |
| TTAGGTAAGCGCTCCGGGTT+AGG | 0.401390 | 5_2:+10332768 | None:intergenic |
| GTTGTGGTATGTGTTGTTAA+AGG | 0.420053 | 5_2:-10332847 | Msa0756260:CDS |
| AACGAGACACCAGTTGTCTA+TGG | 0.421926 | 5_2:-10333065 | Msa0756260:intron |
| TGAATTGCGTCTGAAATCTT+GGG | 0.436291 | 5_2:-10332883 | Msa0756260:CDS |
| TGCTGTTAGAAACCCTCTTC+CGG | 0.440920 | 5_2:-10333111 | Msa0756260:CDS |
| TCAGCAGACCTCCTTGCGTC+TGG | 0.463615 | 5_2:+10332448 | None:intergenic |
| ATACCTTAGGTAAGCGCTCC+GGG | 0.470522 | 5_2:+10332763 | None:intergenic |
| GAACTTGCGCTTTCCTAACC+CGG | 0.481233 | 5_2:-10332781 | Msa0756260:CDS |
| GCCTCAAAGAACTCCGGAAG+AGG | 0.493349 | 5_2:+10333098 | None:intergenic |
| TATTTCATACCATAGACAAC+TGG | 0.503485 | 5_2:+10333056 | None:intergenic |
| AATACCTTAGGTAAGCGCTC+CGG | 0.514447 | 5_2:+10332762 | None:intergenic |
| AAACAGTATTCCACTACAGC+TGG | 0.543067 | 5_2:-10333134 | Msa0756260:CDS |
| ACACATACCACAACTTATGA+AGG | 0.545630 | 5_2:+10332856 | None:intergenic |
| TTTGTTAGGTCGGAGTTGGA+AGG | 0.551769 | 5_2:-10332910 | Msa0756260:intron |
| GGGATGACCTTCATAAGTTG+TGG | 0.556409 | 5_2:-10332863 | Msa0756260:CDS |
| TCTAACAGCACCAGCTGTAG+TGG | 0.557909 | 5_2:+10333124 | None:intergenic |
| TAACCCGGAGCGCTTACCTA+AGG | 0.570629 | 5_2:-10332766 | Msa0756260:intron |
| CTGTCTGCCTCAAAGAACTC+CGG | 0.578032 | 5_2:+10333092 | None:intergenic |
| CCTCAAAGAACTCCGGAAGA+GGG | 0.599992 | 5_2:+10333099 | None:intergenic |
| CGATTGAAGAACCAGACGCA+AGG | 0.611981 | 5_2:-10332459 | Msa0756260:CDS |
| CAGTAAGCACATGCTTGATG+CGG | 0.642610 | 5_2:+10332488 | None:intergenic |
| TTGAAGAACCAGACGCAAGG+AGG | 0.691763 | 5_2:-10332456 | Msa0756260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATGTTAAATTTCGTAT+GGG | - | chr5_2:10333019-10333038 | Msa0756260:intron | 15.0% |
| !! | TAAAATGTTAAATTTCGTAT+GGG | - | chr5_2:10333019-10333038 | Msa0756260:intron | 15.0% |
| !!! | ATAGTTTTACCATTTTTGTT+AGG | - | chr5_2:10332684-10332703 | Msa0756260:intron | 20.0% |
| !! | GTAAAATGTTAAATTTCGTA+TGG | - | chr5_2:10333018-10333037 | Msa0756260:intron | 20.0% |
| !!! | GATTTAATTTATGTGAAATC+AGG | - | chr5_2:10333081-10333100 | Msa0756260:CDS | 20.0% |
| !!! | ATAGTTTTACCATTTTTGTT+AGG | - | chr5_2:10332684-10332703 | Msa0756260:intron | 20.0% |
| !! | GTAAAATGTTAAATTTCGTA+TGG | - | chr5_2:10333018-10333037 | Msa0756260:intron | 20.0% |
| !!! | GATTTAATTTATGTGAAATC+AGG | - | chr5_2:10333081-10333100 | Msa0756260:CDS | 20.0% |
| !!! | ATTTTTTTGTACCTAATGTG+TGG | + | chr5_2:10332635-10332654 | None:intergenic | 25.0% |
| ! | TATAAGAAAACAAAGTGATG+AGG | + | chr5_2:10332667-10332686 | None:intergenic | 25.0% |
| !!! | TTTTACCATTTTTGTTAGGT+CGG | - | chr5_2:10332688-10332707 | Msa0756260:intron | 25.0% |
| ! | AAAAAGTGAAGAAATACCTT+AGG | + | chr5_2:10332861-10332880 | None:intergenic | 25.0% |
| ! | GAGATGAAGAAAATGATAAA+TGG | - | chr5_2:10333181-10333200 | Msa0756260:CDS | 25.0% |
| !!! | ATTTTTTTGTACCTAATGTG+TGG | + | chr5_2:10332635-10332654 | None:intergenic | 25.0% |
| ! | TATAAGAAAACAAAGTGATG+AGG | + | chr5_2:10332667-10332686 | None:intergenic | 25.0% |
| !!! | TTTTACCATTTTTGTTAGGT+CGG | - | chr5_2:10332688-10332707 | Msa0756260:intron | 25.0% |
| ! | AAAAAGTGAAGAAATACCTT+AGG | + | chr5_2:10332861-10332880 | None:intergenic | 25.0% |
| ! | GAGATGAAGAAAATGATAAA+TGG | - | chr5_2:10333181-10333200 | Msa0756260:CDS | 25.0% |
| TATTTCATACCATAGACAAC+TGG | + | chr5_2:10332555-10332574 | None:intergenic | 30.0% | |
| CCTATTCTATTGAAAAGAAG+AGG | + | chr5_2:10332582-10332601 | None:intergenic | 30.0% | |
| ! | CCTCTTCTTTTCAATAGAAT+AGG | - | chr5_2:10332579-10332598 | Msa0756260:intron | 30.0% |
| TTTCATTATAGCCACACATT+AGG | - | chr5_2:10332621-10332640 | Msa0756260:intron | 30.0% | |
| !!! | ATTTCTTCACTTTTTACACC+TGG | - | chr5_2:10332866-10332885 | Msa0756260:CDS | 30.0% |
| ! | TTTTGTTACCCTTAGTTATG+TGG | - | chr5_2:10332908-10332927 | Msa0756260:intron | 30.0% |
| ATCAATGTCCACATAACTAA+GGG | + | chr5_2:10332919-10332938 | None:intergenic | 30.0% | |
| TATCAATGTCCACATAACTA+AGG | + | chr5_2:10332920-10332939 | None:intergenic | 30.0% | |
| AGTTATGTGGACATTGATAT+AGG | - | chr5_2:10332921-10332940 | Msa0756260:intron | 30.0% | |
| ATGTTAAATTTCGTATGGGT+TGG | - | chr5_2:10333023-10333042 | Msa0756260:intron | 30.0% | |
| TGTTAAATTTCGTATGGGTT+GGG | - | chr5_2:10333024-10333043 | Msa0756260:intron | 30.0% | |
| TATTTCATACCATAGACAAC+TGG | + | chr5_2:10332555-10332574 | None:intergenic | 30.0% | |
| CCTATTCTATTGAAAAGAAG+AGG | + | chr5_2:10332582-10332601 | None:intergenic | 30.0% | |
| ! | CCTCTTCTTTTCAATAGAAT+AGG | - | chr5_2:10332579-10332598 | Msa0756260:intron | 30.0% |
| TTTCATTATAGCCACACATT+AGG | - | chr5_2:10332621-10332640 | Msa0756260:intron | 30.0% | |
| !!! | ATTTCTTCACTTTTTACACC+TGG | - | chr5_2:10332866-10332885 | Msa0756260:CDS | 30.0% |
| ! | TTTTGTTACCCTTAGTTATG+TGG | - | chr5_2:10332908-10332927 | Msa0756260:intron | 30.0% |
| ATCAATGTCCACATAACTAA+GGG | + | chr5_2:10332919-10332938 | None:intergenic | 30.0% | |
| TATCAATGTCCACATAACTA+AGG | + | chr5_2:10332920-10332939 | None:intergenic | 30.0% | |
| AGTTATGTGGACATTGATAT+AGG | - | chr5_2:10332921-10332940 | Msa0756260:intron | 30.0% | |
| ATGTTAAATTTCGTATGGGT+TGG | - | chr5_2:10333023-10333042 | Msa0756260:intron | 30.0% | |
| TGTTAAATTTCGTATGGGTT+GGG | - | chr5_2:10333024-10333043 | Msa0756260:intron | 30.0% | |
| !!! | AGTGGAATACTGTTTTGATC+TGG | + | chr5_2:10332469-10332488 | None:intergenic | 35.0% |
| ! | TGAATTGCGTCTGAAATCTT+GGG | - | chr5_2:10332725-10332744 | Msa0756260:intron | 35.0% |
| ACACATACCACAACTTATGA+AGG | + | chr5_2:10332755-10332774 | None:intergenic | 35.0% | |
| ! | GTTGTGGTATGTGTTGTTAA+AGG | - | chr5_2:10332761-10332780 | Msa0756260:intron | 35.0% |
| ATTGATATAGGAAATCGCAG+TGG | - | chr5_2:10332933-10332952 | Msa0756260:intron | 35.0% | |
| ! | GTTAAATTTCGTATGGGTTG+GGG | - | chr5_2:10333025-10333044 | Msa0756260:intron | 35.0% |
| !! | TTAAATTTCGTATGGGTTGG+GGG | - | chr5_2:10333026-10333045 | Msa0756260:intron | 35.0% |
| !!! | AGTGGAATACTGTTTTGATC+TGG | + | chr5_2:10332469-10332488 | None:intergenic | 35.0% |
| ! | TGAATTGCGTCTGAAATCTT+GGG | - | chr5_2:10332725-10332744 | Msa0756260:intron | 35.0% |
| ACACATACCACAACTTATGA+AGG | + | chr5_2:10332755-10332774 | None:intergenic | 35.0% | |
| ! | GTTGTGGTATGTGTTGTTAA+AGG | - | chr5_2:10332761-10332780 | Msa0756260:intron | 35.0% |
| ATTGATATAGGAAATCGCAG+TGG | - | chr5_2:10332933-10332952 | Msa0756260:intron | 35.0% | |
| ! | GTTAAATTTCGTATGGGTTG+GGG | - | chr5_2:10333025-10333044 | Msa0756260:intron | 35.0% |
| !! | TTAAATTTCGTATGGGTTGG+GGG | - | chr5_2:10333026-10333045 | Msa0756260:intron | 35.0% |
| AAACAGTATTCCACTACAGC+TGG | - | chr5_2:10332474-10332493 | Msa0756260:CDS | 40.0% | |
| CAACTCCGACCTAACAAAAA+TGG | + | chr5_2:10332696-10332715 | None:intergenic | 40.0% | |
| ! | CATTTTTGTTAGGTCGGAGT+TGG | - | chr5_2:10332694-10332713 | Msa0756260:intron | 40.0% |
| ! | CTGAATTGCGTCTGAAATCT+TGG | - | chr5_2:10332724-10332743 | Msa0756260:intron | 40.0% |
| ! | GTGGTGCTTTTATCAACGTT+TGG | - | chr5_2:10332955-10332974 | Msa0756260:intron | 40.0% |
| !! | TAAATTTCGTATGGGTTGGG+GGG | - | chr5_2:10333027-10333046 | Msa0756260:intron | 40.0% |
| AAACAGTATTCCACTACAGC+TGG | - | chr5_2:10332474-10332493 | Msa0756260:CDS | 40.0% | |
| CAACTCCGACCTAACAAAAA+TGG | + | chr5_2:10332696-10332715 | None:intergenic | 40.0% | |
| ! | CATTTTTGTTAGGTCGGAGT+TGG | - | chr5_2:10332694-10332713 | Msa0756260:intron | 40.0% |
| ! | CTGAATTGCGTCTGAAATCT+TGG | - | chr5_2:10332724-10332743 | Msa0756260:intron | 40.0% |
| ! | GTGGTGCTTTTATCAACGTT+TGG | - | chr5_2:10332955-10332974 | Msa0756260:intron | 40.0% |
| !! | TAAATTTCGTATGGGTTGGG+GGG | - | chr5_2:10333027-10333046 | Msa0756260:intron | 40.0% |
| TGCTGTTAGAAACCCTCTTC+CGG | - | chr5_2:10332497-10332516 | Msa0756260:CDS | 45.0% | |
| AACGAGACACCAGTTGTCTA+TGG | - | chr5_2:10332543-10332562 | Msa0756260:intron | 45.0% | |
| TTTGTTAGGTCGGAGTTGGA+AGG | - | chr5_2:10332698-10332717 | Msa0756260:intron | 45.0% | |
| GGGATGACCTTCATAAGTTG+TGG | - | chr5_2:10332745-10332764 | Msa0756260:intron | 45.0% | |
| AATACCTTAGGTAAGCGCTC+CGG | + | chr5_2:10332849-10332868 | None:intergenic | 45.0% | |
| GATATAGGAAATCGCAGTGG+TGG | - | chr5_2:10332936-10332955 | Msa0756260:intron | 45.0% | |
| CAGTAAGCACATGCTTGATG+CGG | + | chr5_2:10333123-10333142 | None:intergenic | 45.0% | |
| TGCTGTTAGAAACCCTCTTC+CGG | - | chr5_2:10332497-10332516 | Msa0756260:CDS | 45.0% | |
| AACGAGACACCAGTTGTCTA+TGG | - | chr5_2:10332543-10332562 | Msa0756260:intron | 45.0% | |
| TTTGTTAGGTCGGAGTTGGA+AGG | - | chr5_2:10332698-10332717 | Msa0756260:intron | 45.0% | |
| GGGATGACCTTCATAAGTTG+TGG | - | chr5_2:10332745-10332764 | Msa0756260:intron | 45.0% | |
| AATACCTTAGGTAAGCGCTC+CGG | + | chr5_2:10332849-10332868 | None:intergenic | 45.0% | |
| GATATAGGAAATCGCAGTGG+TGG | - | chr5_2:10332936-10332955 | Msa0756260:intron | 45.0% | |
| CAGTAAGCACATGCTTGATG+CGG | + | chr5_2:10333123-10333142 | None:intergenic | 45.0% | |
| TCTAACAGCACCAGCTGTAG+TGG | + | chr5_2:10332487-10332506 | None:intergenic | 50.0% | |
| CCTCAAAGAACTCCGGAAGA+GGG | + | chr5_2:10332512-10332531 | None:intergenic | 50.0% | |
| CTGTCTGCCTCAAAGAACTC+CGG | + | chr5_2:10332519-10332538 | None:intergenic | 50.0% | |
| GAACTTGCGCTTTCCTAACC+CGG | - | chr5_2:10332827-10332846 | Msa0756260:CDS | 50.0% | |
| ATACCTTAGGTAAGCGCTCC+GGG | + | chr5_2:10332848-10332867 | None:intergenic | 50.0% | |
| CAACACGCGTAAATCAGACC+AGG | + | chr5_2:10332887-10332906 | None:intergenic | 50.0% | |
| CGATTGAAGAACCAGACGCA+AGG | - | chr5_2:10333149-10333168 | Msa0756260:CDS | 50.0% | |
| TTGAAGAACCAGACGCAAGG+AGG | - | chr5_2:10333152-10333171 | Msa0756260:CDS | 50.0% | |
| TCTAACAGCACCAGCTGTAG+TGG | + | chr5_2:10332487-10332506 | None:intergenic | 50.0% | |
| CCTCAAAGAACTCCGGAAGA+GGG | + | chr5_2:10332512-10332531 | None:intergenic | 50.0% | |
| CTGTCTGCCTCAAAGAACTC+CGG | + | chr5_2:10332519-10332538 | None:intergenic | 50.0% | |
| GAACTTGCGCTTTCCTAACC+CGG | - | chr5_2:10332827-10332846 | Msa0756260:CDS | 50.0% | |
| ATACCTTAGGTAAGCGCTCC+GGG | + | chr5_2:10332848-10332867 | None:intergenic | 50.0% | |
| CAACACGCGTAAATCAGACC+AGG | + | chr5_2:10332887-10332906 | None:intergenic | 50.0% | |
| CGATTGAAGAACCAGACGCA+AGG | - | chr5_2:10333149-10333168 | Msa0756260:CDS | 50.0% | |
| TTGAAGAACCAGACGCAAGG+AGG | - | chr5_2:10333152-10333171 | Msa0756260:CDS | 50.0% | |
| CCCTCTTCCGGAGTTCTTTG+AGG | - | chr5_2:10332509-10332528 | Msa0756260:intron | 55.0% | |
| GCCTCAAAGAACTCCGGAAG+AGG | + | chr5_2:10332513-10332532 | None:intergenic | 55.0% | |
| TTAGGTAAGCGCTCCGGGTT+AGG | + | chr5_2:10332843-10332862 | None:intergenic | 55.0% | |
| ! | TAACCCGGAGCGCTTACCTA+AGG | - | chr5_2:10332842-10332861 | Msa0756260:CDS | 55.0% |
| GGTTGGGGGGAAACTGTTCA+CGG | - | chr5_2:10333040-10333059 | Msa0756260:intron | 55.0% | |
| CCCTCTTCCGGAGTTCTTTG+AGG | - | chr5_2:10332509-10332528 | Msa0756260:intron | 55.0% | |
| GCCTCAAAGAACTCCGGAAG+AGG | + | chr5_2:10332513-10332532 | None:intergenic | 55.0% | |
| TTAGGTAAGCGCTCCGGGTT+AGG | + | chr5_2:10332843-10332862 | None:intergenic | 55.0% | |
| ! | TAACCCGGAGCGCTTACCTA+AGG | - | chr5_2:10332842-10332861 | Msa0756260:CDS | 55.0% |
| GGTTGGGGGGAAACTGTTCA+CGG | - | chr5_2:10333040-10333059 | Msa0756260:intron | 55.0% | |
| TCAGCAGACCTCCTTGCGTC+TGG | + | chr5_2:10333163-10333182 | None:intergenic | 60.0% | |
| TCAGCAGACCTCCTTGCGTC+TGG | + | chr5_2:10333163-10333182 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 10332420 | 10333210 | 10332420 | ID=Msa0756260;Name=Msa0756260 |
| chr5_2 | mRNA | 10332420 | 10333210 | 10332420 | ID=Msa0756260-mRNA-1;Parent=Msa0756260;Name=Msa0756260-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|136 |
| chr5_2 | exon | 10333066 | 10333210 | 10333066 | ID=Msa0756260-mRNA-1:exon:4739;Parent=Msa0756260-mRNA-1 |
| chr5_2 | exon | 10332767 | 10332924 | 10332767 | ID=Msa0756260-mRNA-1:exon:4738;Parent=Msa0756260-mRNA-1 |
| chr5_2 | exon | 10332420 | 10332527 | 10332420 | ID=Msa0756260-mRNA-1:exon:4737;Parent=Msa0756260-mRNA-1 |
| chr5_2 | CDS | 10333066 | 10333210 | 10333066 | ID=Msa0756260-mRNA-1:cds;Parent=Msa0756260-mRNA-1 |
| chr5_2 | CDS | 10332767 | 10332924 | 10332767 | ID=Msa0756260-mRNA-1:cds;Parent=Msa0756260-mRNA-1 |
| chr5_2 | CDS | 10332420 | 10332527 | 10332420 | ID=Msa0756260-mRNA-1:cds;Parent=Msa0756260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
