AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242410 MtrunA17_Chr2g0294631 100.000 114 0 0 1 114 1 114 1.97e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242410 AT3G16980.1 88.596 114 13 0 1 114 1 114 2.21e-76 221
Msa0242410 AT4G16265.1 87.719 114 14 0 1 114 1 114 3.00e-76 221
Msa0242410 AT4G16265.2 86.538 104 14 0 11 114 30 133 2.71e-68 201

Find 54 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGGTTCAACTCATCTTT+TGG 0.241483 2_2:-18577825 Msa0242410:three_prime_UTR
AGATGAGTTGAACCTTGATT+TGG 0.294045 2_2:+18577830 None:intergenic
TTCTGTTCTCTGTCTTCCTT+AGG 0.297432 2_2:+18580134 None:intergenic
CTCCAGCGGTGCCCACAGTT+TGG 0.305887 2_2:+18577873 None:intergenic
TCCAGCGGTGCCCACAGTTT+GGG 0.321240 2_2:+18577874 None:intergenic
GTTGTCGATCAAATGATTAA+TGG 0.359170 2_2:-18577667 Msa0242410:three_prime_UTR
AGTATTGATGTAAGAGAGAT+TGG 0.372645 2_2:-18580360 None:intergenic
GAACCTGGTGATCGCAATTA+CGG 0.380587 2_2:+18580093 None:intergenic
TGGTACTCATCTTGTCTTGT+TGG 0.380839 2_2:+18580268 None:intergenic
TTGAGATAGTATTTGTTTGA+AGG 0.395299 2_2:-18577527 Msa0242410:three_prime_UTR
GATGAGTTGAACCTTGATTT+GGG 0.399692 2_2:+18577831 None:intergenic
GATTAATGGACAATCCTTGC+AGG 0.415977 2_2:-18577653 Msa0242410:three_prime_UTR
TCCTTGGTTTGTTAACTTGA+GGG 0.420421 2_2:-18577593 Msa0242410:three_prime_UTR
TGAGCGGACTCAAGTGTTGC+AGG 0.420762 2_2:-18579385 Msa0242410:CDS
CCATTCACGGCAAAACTTCA+TGG 0.428840 2_2:+18580248 None:intergenic
TGGATGGCTCTGAATTTCCT+TGG 0.429314 2_2:-18577609 Msa0242410:three_prime_UTR
ACCCAAACTGTGGGCACCGC+TGG 0.429710 2_2:-18577875 Msa0242410:CDS
TCTGTTCTCTGTCTTCCTTA+GGG 0.436557 2_2:+18580135 None:intergenic
GGGGAAATGTGGAATCAAAA+TGG 0.441694 2_2:-18577568 Msa0242410:three_prime_UTR
TGGTTTGTTAACTTGAGGGA+TGG 0.443611 2_2:-18577589 Msa0242410:three_prime_UTR
AGATTGGAAAGGAGAGAAGT+GGG 0.444912 2_2:-18580344 Msa0242410:five_prime_UTR
AAGAACGCAGCAGAGAAGTT+AGG 0.448523 2_2:-18580307 Msa0242410:five_prime_UTR
GTTTCTTATCAAACGCTTGT+TGG 0.456423 2_2:-18577505 Msa0242410:three_prime_UTR
TTCCTTGGTTTGTTAACTTG+AGG 0.471731 2_2:-18577594 Msa0242410:three_prime_UTR
GAGTAGAAACGAACCATTCA+CGG 0.485823 2_2:+18580235 None:intergenic
GGTTTGTTAACTTGAGGGAT+GGG 0.491964 2_2:-18577588 Msa0242410:three_prime_UTR
GCCTTGGTGCGAGGAAGAGT+TGG 0.493325 2_2:+18579348 None:intergenic
TCGACAACTACAGTTAAAAC+AGG 0.496862 2_2:+18577682 None:intergenic
AGTTGAACCTTGATTTGGGC+AGG 0.503093 2_2:+18577835 None:intergenic
TTGCCGTAATTGCGATCACC+AGG 0.509869 2_2:-18580096 Msa0242410:intron
CGCAATTACGGCAAGCGTAG+AGG 0.511532 2_2:+18580105 None:intergenic
GAGATTGGAAAGGAGAGAAG+TGG 0.517620 2_2:-18580345 Msa0242410:five_prime_UTR
GTTTGTTAACTTGAGGGATG+GGG 0.519130 2_2:-18577587 Msa0242410:three_prime_UTR
ACTTGAGGGATGGGGAAATG+TGG 0.521261 2_2:-18577579 Msa0242410:three_prime_UTR
CGCTGTGTTCAATGCAATCA+TGG 0.530121 2_2:-18579321 Msa0242410:CDS
TTGAACACAGCGAACAGCCT+TGG 0.548593 2_2:+18579332 None:intergenic
GCAACTGCTAGAGGCGAGGA+AGG 0.564765 2_2:-18577924 Msa0242410:CDS
TGGAAAGGAGAGAAGTGGGA+GGG 0.565257 2_2:-18580340 Msa0242410:five_prime_UTR
CTCATTATGTTGTCCACTCT+AGG 0.568474 2_2:-18577791 Msa0242410:three_prime_UTR
TTGGAAAGGAGAGAAGTGGG+AGG 0.571142 2_2:-18580341 Msa0242410:five_prime_UTR
GTTTGCTGCAACCCAAACTG+TGG 0.577890 2_2:-18577885 Msa0242410:CDS
TTTCAGCATGCCAACCTGCA+AGG 0.583495 2_2:+18577639 None:intergenic
TAACAACATTCTATACCCTA+AGG 0.583949 2_2:-18580150 Msa0242410:CDS
AATGGACAATCCTTGCAGGT+TGG 0.593218 2_2:-18577649 Msa0242410:three_prime_UTR
TTTGCTGCAACCCAAACTGT+GGG 0.598453 2_2:-18577884 Msa0242410:CDS
CATATGCAGGCAACTGCTAG+AGG 0.615188 2_2:-18577933 Msa0242410:intron
TGATGTAAGAGAGATTGGAA+AGG 0.618553 2_2:-18580355 None:intergenic
TCCCTCAAGTTAACAAACCA+AGG 0.621329 2_2:+18577592 None:intergenic
CAGCGAACAGCCTTGGTGCG+AGG 0.628441 2_2:+18579339 None:intergenic
GCAGGCAACTGCTAGAGGCG+AGG 0.653952 2_2:-18577928 Msa0242410:intron
TCCAACTCTTCCTCGCACCA+AGG 0.666434 2_2:-18579349 Msa0242410:CDS
TTCACCACTCTGTTGCTGAG+CGG 0.687981 2_2:-18579401 Msa0242410:CDS
GAGTCCGCTCAGCAACAGAG+TGG 0.694701 2_2:+18579397 None:intergenic
ACAAAACTCAGTCTCTCCAG+CGG 0.698214 2_2:+18577859 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATTTTTTTAAAATT+AGG - chr2_2:18577896-18577915 Msa0242410:CDS 0.0%
!!! AATTAATTTTTTTAAAATTA+GGG - chr2_2:18577897-18577916 Msa0242410:CDS 0.0%
!!! TTATTATATTTTCTTTTTAG+TGG - chr2_2:18579209-18579228 Msa0242410:intron 10.0%
!! ATAAAAAAAAATGGGTAAAA+GGG + chr2_2:18577577-18577596 None:intergenic 15.0%
!! AATAAAAAAAAATGGGTAAA+AGG + chr2_2:18577578-18577597 None:intergenic 15.0%
!! AAACTCAAAAAACAAAAAAT+GGG + chr2_2:18577749-18577768 None:intergenic 15.0%
!!! TTGTTTTCAAACAAATATTA+TGG - chr2_2:18578146-18578165 Msa0242410:intron 15.0%
!!! AATTTTCCTTTTTTTTTTTG+TGG + chr2_2:18579517-18579536 None:intergenic 15.0%
!! AACTCAAAAAACAAAAAATG+GGG + chr2_2:18577748-18577767 None:intergenic 20.0%
!! CAAACTCAAAAAACAAAAAA+TGG + chr2_2:18577750-18577769 None:intergenic 20.0%
!!! CATTTTTTGTTTTTTGAGTT+TGG - chr2_2:18577748-18577767 Msa0242410:three_prime_UTR 20.0%
!! AAATTAGGGTTTAACAATTA+TGG - chr2_2:18577911-18577930 Msa0242410:CDS 20.0%
!! AATTAGGGTTTAACAATTAT+GGG - chr2_2:18577912-18577931 Msa0242410:CDS 20.0%
!!! TTTTTTTTTTTTTTTGAGGG+TGG - chr2_2:18577952-18577971 Msa0242410:intron 20.0%
!! TGTTCTAATTTGATCAATTT+AGG - chr2_2:18577996-18578015 Msa0242410:intron 20.0%
!!! ATAAGCTACTTTTTAACAAA+AGG - chr2_2:18578086-18578105 Msa0242410:intron 20.0%
!!! TTGATTTTTAGAAGTTTTGA+AGG - chr2_2:18578550-18578569 Msa0242410:intron 20.0%
!!! CTTGAGTTTTATATATTTTG+TGG - chr2_2:18578656-18578675 Msa0242410:intron 20.0%
!! AATTCCAATATGAATTGTTT+AGG - chr2_2:18578952-18578971 Msa0242410:intron 20.0%
!! ATTCCAATATGAATTGTTTA+GGG - chr2_2:18578953-18578972 Msa0242410:intron 20.0%
!! AAACCTTATTCTATTACTTA+TGG - chr2_2:18579796-18579815 Msa0242410:intron 20.0%
!!! AATTTTTTATATGCATATGC+AGG - chr2_2:18579827-18579846 Msa0242410:intron 20.0%
!!! ATGGGGTTTTTTTTTATACA+CGG + chr2_2:18577731-18577750 None:intergenic 25.0%
!!! CATTATTAGCTTATTTTGAG+TGG - chr2_2:18577824-18577843 Msa0242410:three_prime_UTR 25.0%
! GGATAAATAGCTTAATTAAG+TGG - chr2_2:18578027-18578046 Msa0242410:intron 25.0%
!!! ATTTTGACTTTAAAGTAGAG+TGG - chr2_2:18578599-18578618 Msa0242410:intron 25.0%
!! AAAAAACGTATACGTTTTGA+AGG - chr2_2:18578763-18578782 Msa0242410:intron 25.0%
! TAACCCTAAACAATTCATAT+TGG + chr2_2:18578959-18578978 None:intergenic 25.0%
!!! TATTGTCGTTATCTTGTTTT+TGG - chr2_2:18579064-18579083 Msa0242410:intron 25.0%
! TCTTCACCACAAAAAAAAAA+AGG - chr2_2:18579508-18579527 Msa0242410:intron 25.0%
!!! TTTCTTCATTGCTTTTGAAA+GGG + chr2_2:18579713-18579732 None:intergenic 25.0%
!!! ATTTCTTCATTGCTTTTGAA+AGG + chr2_2:18579714-18579733 None:intergenic 25.0%
! AAAATGCATTCATAAGAGTA+GGG + chr2_2:18579747-18579766 None:intergenic 25.0%
! AAAAATGCATTCATAAGAGT+AGG + chr2_2:18579748-18579767 None:intergenic 25.0%
! GATCCATAAGTAATAGAATA+AGG + chr2_2:18579802-18579821 None:intergenic 25.0%
! TTATTAAAAATCGAGTGATG+TGG - chr2_2:18580025-18580044 Msa0242410:intron 25.0%
! TATTAAAAATCGAGTGATGT+GGG - chr2_2:18580026-18580045 Msa0242410:intron 25.0%
!! ATGCTGAAATTTTATATGGA+TGG - chr2_2:18580148-18580167 Msa0242410:CDS 25.0%
! TTGAGATAGTATTTGTTTGA+AGG - chr2_2:18580246-18580265 Msa0242410:intron 25.0%
TAACAACATTCTATACCCTA+AGG - chr2_2:18577623-18577642 Msa0242410:three_prime_UTR 30.0%
TTTATACACGGCAATGATTT+GGG + chr2_2:18577719-18577738 None:intergenic 30.0%
! TTTTATACACGGCAATGATT+TGG + chr2_2:18577720-18577739 None:intergenic 30.0%
!! TTTTGTGTTGCTAAGTTAGA+GGG - chr2_2:18577859-18577878 Msa0242410:exon 30.0%
TTAAGCTATTTATCCCAACA+AGG + chr2_2:18578022-18578041 None:intergenic 30.0%
CAAATATTATGGAGAGCTTA+TGG - chr2_2:18578157-18578176 Msa0242410:intron 30.0%
TCACAAGTACTTATCATAGT+AGG - chr2_2:18578244-18578263 Msa0242410:intron 30.0%
! TTGTTTGACTAGTTGTTTAC+TGG - chr2_2:18578287-18578306 Msa0242410:intron 30.0%
!!! TGTTGTTGTTTTTGTTGTTC+AGG - chr2_2:18578313-18578332 Msa0242410:intron 30.0%
! GTAGAGTCATAGGAATTTTA+AGG - chr2_2:18578621-18578640 Msa0242410:intron 30.0%
TTCACTTCTTCACAAACTAA+GGG + chr2_2:18578725-18578744 None:intergenic 30.0%
ATTCACTTCTTCACAAACTA+AGG + chr2_2:18578726-18578745 None:intergenic 30.0%
AGAAGTGAATCTTAGAAAGA+AGG - chr2_2:18578736-18578755 Msa0242410:intron 30.0%
! TTTAGGGTTATAAAGTGTCA+CGG - chr2_2:18578969-18578988 Msa0242410:intron 30.0%
ACAAGATAACGACAATAGAA+AGG + chr2_2:18579061-18579080 None:intergenic 30.0%
!! AATCTCCATTTTAGTGTTCA+TGG - chr2_2:18579157-18579176 Msa0242410:intron 30.0%
TAGAACCATGAACACTAAAA+TGG + chr2_2:18579165-18579184 None:intergenic 30.0%
!! ATTTTAGTGTTCATGGTTCT+AGG - chr2_2:18579164-18579183 Msa0242410:intron 30.0%
TAGCGTAAATGAATATACGA+AGG - chr2_2:18579261-18579280 Msa0242410:intron 30.0%
TGAATATACGAAGGTTTCAT+AGG - chr2_2:18579270-18579289 Msa0242410:intron 30.0%
GAATATACGAAGGTTTCATA+GGG - chr2_2:18579271-18579290 Msa0242410:intron 30.0%
AGAATGAGTTTACAGCATAT+AGG + chr2_2:18579401-18579420 None:intergenic 30.0%
GTATCTCTCATATGTTGAAT+AGG - chr2_2:18579421-18579440 Msa0242410:CDS 30.0%
! ATGTTGAATAGGTAACGTTT+TGG - chr2_2:18579432-18579451 Msa0242410:CDS 30.0%
TTTGTGGTGAAGAACTAATT+TGG + chr2_2:18579501-18579520 None:intergenic 30.0%
!! ATATCCACATTACTTTTAGC+GGG + chr2_2:18579634-18579653 None:intergenic 30.0%
!! CATATCCACATTACTTTTAG+CGG + chr2_2:18579635-18579654 None:intergenic 30.0%
AAAAGTAATGTGGATATGTC+AGG - chr2_2:18579637-18579656 Msa0242410:intron 30.0%
!! TTCTTCATTGCTTTTGAAAG+GGG + chr2_2:18579712-18579731 None:intergenic 30.0%
ATTAAAAATCGAGTGATGTG+GGG - chr2_2:18580027-18580046 Msa0242410:intron 30.0%
CTCTAATCTGTGTTAAAAAC+AGG + chr2_2:18580057-18580076 None:intergenic 30.0%
GTTGTCGATCAAATGATTAA+TGG - chr2_2:18580106-18580125 Msa0242410:CDS 30.0%
! TGGCATGCTGAAATTTTATA+TGG - chr2_2:18580144-18580163 Msa0242410:CDS 30.0%
!!! GAGCAGTGATATTTTAATGA+GGG + chr2_2:18580309-18580328 None:intergenic 30.0%
!!! AGAGCAGTGATATTTTAATG+AGG + chr2_2:18580310-18580329 None:intergenic 30.0%
GGAAATTGAAATAACGAACC+TGG + chr2_2:18577698-18577717 None:intergenic 35.0%
!! CTTTTGTGTTGCTAAGTTAG+AGG - chr2_2:18577858-18577877 Msa0242410:exon 35.0%
CTAAGTTAGAGGGTTTATGA+AGG - chr2_2:18577869-18577888 Msa0242410:CDS 35.0%
! TTGATCAATTTAGGCCTTGT+TGG - chr2_2:18578005-18578024 Msa0242410:intron 35.0%
!! TGATCAATTTAGGCCTTGTT+GGG - chr2_2:18578006-18578025 Msa0242410:intron 35.0%
TAAGTACTTGTGAAACAGCT+TGG + chr2_2:18578237-18578256 None:intergenic 35.0%
!!! TGTTGTTTTTGTTGTTCAGG+AGG - chr2_2:18578316-18578335 Msa0242410:intron 35.0%
CATAGAACAGAAACTTTACC+TGG + chr2_2:18578493-18578512 None:intergenic 35.0%
CAGGTAAAGTTTCTGTTCTA+TGG - chr2_2:18578491-18578510 Msa0242410:intron 35.0%
!!! TAGAAGTTTTGAAGGAAGAG+AGG - chr2_2:18578558-18578577 Msa0242410:intron 35.0%
!!! AGGAAAGCATTTTCATGCTA+AGG - chr2_2:18578783-18578802 Msa0242410:intron 35.0%
!!! GGAAAGCATTTTCATGCTAA+GGG - chr2_2:18578784-18578803 Msa0242410:intron 35.0%
! TTTTCATGCTAAGGGATAAG+TGG - chr2_2:18578792-18578811 Msa0242410:intron 35.0%
TGCTATAATCTACAACACTC+AGG + chr2_2:18578857-18578876 None:intergenic 35.0%
ATGACTATTGCATAGATGCT+AGG - chr2_2:18578995-18579014 Msa0242410:intron 35.0%
! ATTTAAAGCTGAACTTGTGG+TGG + chr2_2:18579124-18579143 None:intergenic 35.0%
! GACATTTAAAGCTGAACTTG+TGG + chr2_2:18579127-18579146 None:intergenic 35.0%
!! CAAGTTCAGCTTTAAATGTC+AGG - chr2_2:18579127-18579146 Msa0242410:intron 35.0%
AGAAATGTCATTGAGCAACT+TGG + chr2_2:18579567-18579586 None:intergenic 35.0%
TGTGTATAGTGAGCGAATAA+AGG + chr2_2:18579599-18579618 None:intergenic 35.0%
! GATGAGTTGAACCTTGATTT+GGG + chr2_2:18579945-18579964 None:intergenic 35.0%
! AGATGAGTTGAACCTTGATT+TGG + chr2_2:18579946-18579965 None:intergenic 35.0%
! TCAAGGTTCAACTCATCTTT+TGG - chr2_2:18579948-18579967 Msa0242410:intron 35.0%
! CAAGGTTCAACTCATCTTTT+GGG - chr2_2:18579949-18579968 Msa0242410:intron 35.0%
! AAGGTTCAACTCATCTTTTG+GGG - chr2_2:18579950-18579969 Msa0242410:intron 35.0%
! TTTTCTCTTCTATCCTAGAG+TGG + chr2_2:18579998-18580017 None:intergenic 35.0%
TCGACAACTACAGTTAAAAC+AGG + chr2_2:18580094-18580113 None:intergenic 35.0%
!! TTCCTTGGTTTGTTAACTTG+AGG - chr2_2:18580179-18580198 Msa0242410:intron 35.0%
!! TCCTTGGTTTGTTAACTTGA+GGG - chr2_2:18580180-18580199 Msa0242410:intron 35.0%
CTCAAAGCTCAACACAAAAA+TGG + chr2_2:18580231-18580250 None:intergenic 35.0%
GTTTCTTATCAAACGCTTGT+TGG - chr2_2:18580268-18580287 Msa0242410:exon 35.0%
AGATTGGAAAGGAGAGAAGT+GGG - chr2_2:18577429-18577448 Msa0242410:three_prime_UTR 40.0%
TGGTACTCATCTTGTCTTGT+TGG + chr2_2:18577508-18577527 None:intergenic 40.0%
GAGTAGAAACGAACCATTCA+CGG + chr2_2:18577541-18577560 None:intergenic 40.0%
TCTGTTCTCTGTCTTCCTTA+GGG + chr2_2:18577641-18577660 None:intergenic 40.0%
TTCTGTTCTCTGTCTTCCTT+AGG + chr2_2:18577642-18577661 None:intergenic 40.0%
AAACAGCTTGGAAGAGCTTA+TGG + chr2_2:18578225-18578244 None:intergenic 40.0%
GTCAAAATCAACAGCGACTT+GGG + chr2_2:18578587-18578606 None:intergenic 40.0%
AGTCAAAATCAACAGCGACT+TGG + chr2_2:18578588-18578607 None:intergenic 40.0%
AAGTAGAGTGGTAGAGTCAT+AGG - chr2_2:18578611-18578630 Msa0242410:intron 40.0%
TCTACAACACTCAGGTTTGT+GGG + chr2_2:18578849-18578868 None:intergenic 40.0%
ATCTACAACACTCAGGTTTG+TGG + chr2_2:18578850-18578869 None:intergenic 40.0%
ACTATTGCATAGATGCTAGG+AGG - chr2_2:18578998-18579017 Msa0242410:intron 40.0%
GTAATGTGGATATGTCAGGT+AGG - chr2_2:18579641-18579660 Msa0242410:intron 40.0%
! AGGTTCAACTCATCTTTTGG+GGG - chr2_2:18579951-18579970 Msa0242410:intron 40.0%
CTCATTATGTTGTCCACTCT+AGG - chr2_2:18579982-18580001 Msa0242410:intron 40.0%
! GATTAATGGACAATCCTTGC+AGG - chr2_2:18580120-18580139 Msa0242410:CDS 40.0%
TCCCTCAAGTTAACAAACCA+AGG + chr2_2:18580184-18580203 None:intergenic 40.0%
!! TGGTTTGTTAACTTGAGGGA+TGG - chr2_2:18580184-18580203 Msa0242410:intron 40.0%
!! GGTTTGTTAACTTGAGGGAT+GGG - chr2_2:18580185-18580204 Msa0242410:intron 40.0%
! GTTTGTTAACTTGAGGGATG+GGG - chr2_2:18580186-18580205 Msa0242410:intron 40.0%
GGGGAAATGTGGAATCAAAA+TGG - chr2_2:18580205-18580224 Msa0242410:intron 40.0%
GAGATTGGAAAGGAGAGAAG+TGG - chr2_2:18577428-18577447 Msa0242410:three_prime_UTR 45.0%
AAGAACGCAGCAGAGAAGTT+AGG - chr2_2:18577466-18577485 Msa0242410:three_prime_UTR 45.0%
CCATTCACGGCAAAACTTCA+TGG + chr2_2:18577528-18577547 None:intergenic 45.0%
! CCATGAAGTTTTGCCGTGAA+TGG - chr2_2:18577525-18577544 Msa0242410:three_prime_UTR 45.0%
GAACCTGGTGATCGCAATTA+CGG + chr2_2:18577683-18577702 None:intergenic 45.0%
CGCTGTGTTCAATGCAATCA+TGG - chr2_2:18578452-18578471 Msa0242410:intron 45.0%
! TGGTGAAGCTGTGTTTTTCC+AGG - chr2_2:18578472-18578491 Msa0242410:intron 45.0%
TCCCTATGACTCAGTTAGAC+TGG - chr2_2:18579323-18579342 Msa0242410:CDS 45.0%
GCCAGTCTAACTGAGTCATA+GGG + chr2_2:18579327-18579346 None:intergenic 45.0%
TGCCAGTCTAACTGAGTCAT+AGG + chr2_2:18579328-18579347 None:intergenic 45.0%
GTGCCATCTGTCAAACAGTT+TGG - chr2_2:18579355-18579374 Msa0242410:CDS 45.0%
CTGCCAAACTGTTTGACAGA+TGG + chr2_2:18579361-18579380 None:intergenic 45.0%
! CCAGTGTTTAGGTTCAGCTA+TGG + chr2_2:18579544-18579563 None:intergenic 45.0%
CCATAGCTGAACCTAAACAC+TGG - chr2_2:18579541-18579560 Msa0242410:intron 45.0%
TCTGCCCGCTAAAAGTAATG+TGG - chr2_2:18579627-18579646 Msa0242410:intron 45.0%
TTTGCTGCAACCCAAACTGT+GGG - chr2_2:18579889-18579908 Msa0242410:intron 45.0%
ACAAAACTCAGTCTCTCCAG+CGG + chr2_2:18579917-18579936 None:intergenic 45.0%
! TTTTGTGCCTGCCCAAATCA+AGG - chr2_2:18579931-18579950 Msa0242410:intron 45.0%
!! AGTTGAACCTTGATTTGGGC+AGG + chr2_2:18579941-18579960 None:intergenic 45.0%
AATGGACAATCCTTGCAGGT+TGG - chr2_2:18580124-18580143 Msa0242410:CDS 45.0%
!! TGGATGGCTCTGAATTTCCT+TGG - chr2_2:18580164-18580183 Msa0242410:intron 45.0%
!! ATTTAGAAATAAAAAAAAAT+GGG + chr2_2:18577585-18577604 None:intergenic 5.0%
!! AATTTAGAAATAAAAAAAAA+TGG + chr2_2:18577586-18577605 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr2_2:18577948-18577967 Msa0242410:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr2_2:18577949-18577968 Msa0242410:intron 5.0%
TTGGAAAGGAGAGAAGTGGG+AGG - chr2_2:18577432-18577451 Msa0242410:three_prime_UTR 50.0%
TGGAAAGGAGAGAAGTGGGA+GGG - chr2_2:18577433-18577452 Msa0242410:three_prime_UTR 50.0%
TTGCCGTAATTGCGATCACC+AGG - chr2_2:18577677-18577696 Msa0242410:three_prime_UTR 50.0%
TTCACCACTCTGTTGCTGAG+CGG - chr2_2:18578372-18578391 Msa0242410:intron 50.0%
TTGAACACAGCGAACAGCCT+TGG + chr2_2:18578444-18578463 None:intergenic 50.0%
GAGCAACTTGGCCAGTGTTT+AGG + chr2_2:18579555-18579574 None:intergenic 50.0%
CATATGCAGGCAACTGCTAG+AGG - chr2_2:18579840-18579859 Msa0242410:intron 50.0%
! GTTTGCTGCAACCCAAACTG+TGG - chr2_2:18579888-18579907 Msa0242410:intron 50.0%
TTTCAGCATGCCAACCTGCA+AGG + chr2_2:18580137-18580156 None:intergenic 50.0%
ACTTGAGGGATGGGGAAATG+TGG - chr2_2:18580194-18580213 Msa0242410:intron 50.0%
CGCAATTACGGCAAGCGTAG+AGG + chr2_2:18577671-18577690 None:intergenic 55.0%
! TGAGCGGACTCAAGTGTTGC+AGG - chr2_2:18578388-18578407 Msa0242410:intron 55.0%
TCCAACTCTTCCTCGCACCA+AGG - chr2_2:18578424-18578443 Msa0242410:intron 55.0%
GAGTCCGCTCAGCAACAGAG+TGG + chr2_2:18578379-18578398 None:intergenic 60.0%
! GCCTTGGTGCGAGGAAGAGT+TGG + chr2_2:18578428-18578447 None:intergenic 60.0%
GCAACTGCTAGAGGCGAGGA+AGG - chr2_2:18579849-18579868 Msa0242410:intron 60.0%
TCCAGCGGTGCCCACAGTTT+GGG + chr2_2:18579902-18579921 None:intergenic 60.0%
! CAGCGAACAGCCTTGGTGCG+AGG + chr2_2:18578437-18578456 None:intergenic 65.0%
GCAGGCAACTGCTAGAGGCG+AGG - chr2_2:18579845-18579864 Msa0242410:intron 65.0%
! ACCCAAACTGTGGGCACCGC+TGG - chr2_2:18579898-18579917 Msa0242410:intron 65.0%
CTCCAGCGGTGCCCACAGTT+TGG + chr2_2:18579903-18579922 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 18577424 18580371 18577424 ID=Msa0242410;Name=Msa0242410
chr2_2 mRNA 18577424 18580371 18577424 ID=Msa0242410-mRNA-1;Parent=Msa0242410;Name=Msa0242410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=94|1|1|1|1|1|4|442|114
chr2_2 exon 18577424 18577946 18577424 ID=Msa0242410-mRNA-1:exon:7584;Parent=Msa0242410-mRNA-1
chr2_2 exon 18579302 18579460 18579302 ID=Msa0242410-mRNA-1:exon:7583;Parent=Msa0242410-mRNA-1
chr2_2 exon 18580097 18580172 18580097 ID=Msa0242410-mRNA-1:exon:7582;Parent=Msa0242410-mRNA-1
chr2_2 exon 18580249 18580371 18580249 ID=Msa0242410-mRNA-1:exon:7581;Parent=Msa0242410-mRNA-1
chr2_2 five_prime_UTR 18580278 18580371 18580278 ID=Msa0242410-mRNA-1:five_prime_utr;Parent=Msa0242410-mRNA-1
chr2_2 CDS 18580249 18580277 18580249 ID=Msa0242410-mRNA-1:cds;Parent=Msa0242410-mRNA-1
chr2_2 CDS 18580097 18580172 18580097 ID=Msa0242410-mRNA-1:cds;Parent=Msa0242410-mRNA-1
chr2_2 CDS 18579302 18579460 18579302 ID=Msa0242410-mRNA-1:cds;Parent=Msa0242410-mRNA-1
chr2_2 CDS 18577866 18577946 18577866 ID=Msa0242410-mRNA-1:cds;Parent=Msa0242410-mRNA-1
chr2_2 three_prime_UTR 18577424 18577865 18577424 ID=Msa0242410-mRNA-1:three_prime_utr;Parent=Msa0242410-mRNA-1
Gene Sequence

>Msa0242410

ATGAGTACCATGAAGTTTTGCCGTGAATGTAACAACATTCTATACCCTAAGGAAGACAGAGAACAGAAAATTCTCCTCTACGCTTGCCGTAATTGCGATCACCAGGAGGCAGCTGATAACTTCTGTGTCTACAGAAATGAGATTCACCACTCTGTTGCTGAGCGGACTCAAGTGTTGCAGGATGTAGCTGCAGATCCAACTCTTCCTCGCACCAAGGCTGTTCGCTGTGTTCAATGCAATCATGGTGAAGCTGTGTTTTTCCAGGCAACTGCTAGAGGCGAGGAAGGAATGACACTTTTCTTCGTTTGCTGCAACCCAAACTGTGGGCACCGCTGGAGAGACTGA

Protein sequence

>Msa0242410

MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD*