Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835420 | XP_003611613.2 | 97.810 | 137 | 2 | 1 | 1 | 136 | 1 | 137 | 5.47e-93 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835420 | sp|Q8K2Y7|RM47_MOUSE | 50.562 | 89 | 43 | 1 | 29 | 116 | 63 | 151 | 1.53e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835420 | G7K3V1 | 97.810 | 137 | 2 | 1 | 1 | 136 | 1 | 137 | 2.61e-93 | 275 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0835420 | 0.812194 | 4.793858e-51 | -8.615850e-47 |
| Msa0025730 | Msa0835420 | 0.808677 | 2.754246e-50 | -8.615850e-47 |
| Msa0027260 | Msa0835420 | 0.824433 | 8.093601e-54 | -8.615850e-47 |
| Msa0029260 | Msa0835420 | 0.813740 | 2.196277e-51 | -8.615850e-47 |
| Msa0032260 | Msa0835420 | 0.825873 | 3.696136e-54 | -8.615850e-47 |
| Msa0047160 | Msa0835420 | 0.821674 | 3.560585e-53 | -8.615850e-47 |
| Msa0048180 | Msa0835420 | 0.836307 | 1.010317e-56 | -8.615850e-47 |
| Msa0055180 | Msa0835420 | 0.819446 | 1.156825e-52 | -8.615850e-47 |
| Msa0056470 | Msa0835420 | 0.817685 | 2.901167e-52 | -8.615850e-47 |
| Msa0086750 | Msa0835420 | 0.816524 | 5.291328e-52 | -8.615850e-47 |
| Msa0090520 | Msa0835420 | 0.815794 | 7.701415e-52 | -8.615850e-47 |
| Msa0094470 | Msa0835420 | 0.830580 | 2.711180e-55 | -8.615850e-47 |
| Msa0100740 | Msa0835420 | 0.809056 | 2.284543e-50 | -8.615850e-47 |
| Msa0603320 | Msa0835420 | 0.836212 | 1.068388e-56 | -8.615850e-47 |
| Msa0610390 | Msa0835420 | 0.819051 | 1.422435e-52 | -8.615850e-47 |
| Msa0615440 | Msa0835420 | 0.807981 | 3.876106e-50 | -8.615850e-47 |
| Msa0647500 | Msa0835420 | 0.805251 | 1.461136e-49 | -8.615850e-47 |
| Msa0650920 | Msa0835420 | 0.824861 | 6.415704e-54 | -8.615850e-47 |
| Msa0661300 | Msa0835420 | 0.826733 | 2.307038e-54 | -8.615850e-47 |
| Msa0666230 | Msa0835420 | 0.817094 | 3.940625e-52 | -8.615850e-47 |
| Msa0689260 | Msa0835420 | 0.812714 | 3.688742e-51 | -8.615850e-47 |
| Msa0692840 | Msa0835420 | 0.824520 | 7.721319e-54 | -8.615850e-47 |
| Msa0692940 | Msa0835420 | 0.835135 | 2.001763e-56 | -8.615850e-47 |
| Msa0698490 | Msa0835420 | 0.812745 | 3.631895e-51 | -8.615850e-47 |
| Msa0698660 | Msa0835420 | 0.811862 | 5.660832e-51 | -8.615850e-47 |
| Msa0698780 | Msa0835420 | 0.807998 | 3.842762e-50 | -8.615850e-47 |
| Msa0753140 | Msa0835420 | 0.804982 | 1.662895e-49 | -8.615850e-47 |
| Msa0756260 | Msa0835420 | 0.889606 | 2.083545e-73 | -8.615850e-47 |
| Msa0772480 | Msa0835420 | 0.822317 | 2.526527e-53 | -8.615850e-47 |
| Msa0788850 | Msa0835420 | 0.805181 | 1.511217e-49 | -8.615850e-47 |
| Msa0797880 | Msa0835420 | 0.972692 | 3.492501e-135 | -8.615850e-47 |
| Msa0798440 | Msa0835420 | 0.831725 | 1.418318e-55 | -8.615850e-47 |
| Msa0806920 | Msa0835420 | 0.805792 | 1.125133e-49 | -8.615850e-47 |
| Msa0830540 | Msa0835420 | 0.807838 | 4.155916e-50 | -8.615850e-47 |
| Msa0835420 | Msa0881290 | 0.800429 | 1.447323e-48 | -8.615850e-47 |
| Msa0835420 | Msa0902760 | 0.828079 | 1.097168e-54 | -8.615850e-47 |
| Msa0835420 | Msa0968590 | 0.826384 | 2.794551e-54 | -8.615850e-47 |
| Msa0835420 | Msa0989540 | 0.826714 | 2.331238e-54 | -8.615850e-47 |
| Msa0835420 | Msa1006840 | 0.849929 | 2.357631e-60 | -8.615850e-47 |
| Msa0835420 | Msa1013400 | 0.839632 | 1.410673e-57 | -8.615850e-47 |
| Msa0835420 | Msa1019240 | 0.833459 | 5.267569e-56 | -8.615850e-47 |
| Msa0835420 | Msa1019260 | 0.839861 | 1.229695e-57 | -8.615850e-47 |
| Msa0835420 | Msa1072710 | 0.801639 | 8.187774e-49 | -8.615850e-47 |
| Msa0835420 | Msa1077030 | 0.808524 | 2.968350e-50 | -8.615850e-47 |
| Msa0835420 | Msa1081150 | 0.841959 | 3.461866e-58 | -8.615850e-47 |
| Msa0835420 | Msa1081930 | 0.803777 | 2.965401e-49 | -8.615850e-47 |
| Msa0835420 | Msa1093530 | 0.829523 | 4.909793e-55 | -8.615850e-47 |
| Msa0835420 | Msa1101600 | 0.811672 | 6.226817e-51 | -8.615850e-47 |
| Msa0835420 | Msa1104140 | 0.845210 | 4.680442e-59 | -8.615850e-47 |
| Msa0835420 | Msa1104210 | 0.829739 | 4.349015e-55 | -8.615850e-47 |
| Msa0835420 | Msa1121680 | 0.811255 | 7.670467e-51 | -8.615850e-47 |
| Msa0835420 | Msa1126510 | 0.826008 | 3.433501e-54 | -8.615850e-47 |
| Msa0835420 | Msa1126830 | 0.823840 | 1.115417e-53 | -8.615850e-47 |
| Msa0835420 | Msa1165780 | 0.800371 | 1.487185e-48 | -8.615850e-47 |
| Msa0835420 | Msa1165940 | 0.828099 | 1.085029e-54 | -8.615850e-47 |
| Msa0835420 | Msa1166860 | 0.824230 | 9.035360e-54 | -8.615850e-47 |
| Msa0835420 | Msa1207270 | 0.819266 | 1.271026e-52 | -8.615850e-47 |
| Msa0835420 | Msa1208020 | 0.811618 | 6.397161e-51 | -8.615850e-47 |
| Msa0835420 | Msa1215820 | 0.801569 | 8.464039e-49 | -8.615850e-47 |
| Msa0835420 | Msa1218600 | 0.834590 | 2.744186e-56 | -8.615850e-47 |
| Msa0835420 | Msa1237940 | 0.852981 | 3.230331e-61 | -8.615850e-47 |
| Msa0835420 | Msa1257510 | 0.875824 | 2.272525e-68 | -8.615850e-47 |
| Msa0835420 | Msa1265630 | 0.823328 | 1.469440e-53 | -8.615850e-47 |
| Msa0835420 | Msa1331250 | 0.810165 | 1.319869e-50 | -8.615850e-47 |
| Msa0835420 | Msa1338190 | 0.820084 | 8.267579e-53 | -8.615850e-47 |
| Msa0835420 | Msa1343260 | 0.812661 | 3.789655e-51 | -8.615850e-47 |
| Msa0835420 | Msa1358250 | 0.814242 | 1.702113e-51 | -8.615850e-47 |
| Msa0835420 | Msa1363330 | 0.836028 | 1.189817e-56 | -8.615850e-47 |
| Msa0835420 | Msa1374120 | 0.807678 | 4.494260e-50 | -8.615850e-47 |
| Msa0835420 | Msa1379760 | 0.822228 | 2.650718e-53 | -8.615850e-47 |
| Msa0835420 | Msa1386600 | 0.837028 | 6.619776e-57 | -8.615850e-47 |
| Msa0835420 | Msa1394290 | 0.822120 | 2.807085e-53 | -8.615850e-47 |
| Msa0835420 | Msa1432700 | 0.835907 | 1.276364e-56 | -8.615850e-47 |
| Msa0835420 | Msa1444310 | 0.831050 | 2.079768e-55 | -8.615850e-47 |
| Msa0835420 | Msa1448690 | 0.809186 | 2.142432e-50 | -8.615850e-47 |
| Msa0835420 | Msa1456050 | 0.822202 | 2.686626e-53 | -8.615850e-47 |
| Msa0835420 | Msa1457920 | 0.835133 | 2.003610e-56 | -8.615850e-47 |
| Msa0127310 | Msa0835420 | 0.816711 | 4.802543e-52 | -8.615850e-47 |
| Msa0128860 | Msa0835420 | 0.822342 | 2.493729e-53 | -8.615850e-47 |
| Msa0137990 | Msa0835420 | 0.814419 | 1.555766e-51 | -8.615850e-47 |
| Msa0169300 | Msa0835420 | 0.815376 | 9.541820e-52 | -8.615850e-47 |
| Msa0174730 | Msa0835420 | 0.823674 | 1.220061e-53 | -8.615850e-47 |
| Msa0183900 | Msa0835420 | 0.821033 | 5.004872e-53 | -8.615850e-47 |
| Msa0187930 | Msa0835420 | 0.816457 | 5.476934e-52 | -8.615850e-47 |
| Msa0189300 | Msa0835420 | 0.810949 | 8.937448e-51 | -8.615850e-47 |
| Msa0189700 | Msa0835420 | 0.800909 | 1.155274e-48 | -8.615850e-47 |
| Msa0194540 | Msa0835420 | 0.813968 | 1.956287e-51 | -8.615850e-47 |
| Msa0199880 | Msa0835420 | 0.809288 | 2.037621e-50 | -8.615850e-47 |
| Msa0231660 | Msa0835420 | 0.805714 | 1.168111e-49 | -8.615850e-47 |
| Msa0232010 | Msa0835420 | 0.811406 | 7.112429e-51 | -8.615850e-47 |
| Msa0232080 | Msa0835420 | 0.812590 | 3.926695e-51 | -8.615850e-47 |
| Msa0366890 | Msa0835420 | 0.828991 | 6.607816e-55 | -8.615850e-47 |
| Msa0369450 | Msa0835420 | 0.806425 | 8.279379e-50 | -8.615850e-47 |
| Msa0385580 | Msa0835420 | 0.817407 | 3.351880e-52 | -8.615850e-47 |
| Msa0387730 | Msa0835420 | 0.811702 | 6.133260e-51 | -8.615850e-47 |
| Msa0395820 | Msa0835420 | 0.820881 | 5.425656e-53 | -8.615850e-47 |
| Msa0414800 | Msa0835420 | 0.814231 | 1.711445e-51 | -8.615850e-47 |
| Msa0443390 | Msa0835420 | 0.816846 | 4.480065e-52 | -8.615850e-47 |
| Msa0465550 | Msa0835420 | 0.802605 | 5.181771e-49 | -8.615850e-47 |
| Msa0471440 | Msa0835420 | 0.809859 | 1.536247e-50 | -8.615850e-47 |
| Msa0471590 | Msa0835420 | 0.806836 | 6.779380e-50 | -8.615850e-47 |
| Msa0242410 | Msa0835420 | 0.820130 | 8.071669e-53 | -8.615850e-47 |
| Msa0244780 | Msa0835420 | 0.813795 | 2.136000e-51 | -8.615850e-47 |
| Msa0267970 | Msa0835420 | 0.800976 | 1.119562e-48 | -8.615850e-47 |
| Msa0268130 | Msa0835420 | 0.815245 | 1.020489e-51 | -8.615850e-47 |
| Msa0280610 | Msa0835420 | 0.816337 | 5.824569e-52 | -8.615850e-47 |
| Msa0298990 | Msa0835420 | 0.814343 | 1.617004e-51 | -8.615850e-47 |
| Msa0508630 | Msa0835420 | 0.800746 | 1.246969e-48 | -8.615850e-47 |
| Msa0511490 | Msa0835420 | 0.806869 | 6.672043e-50 | -8.615850e-47 |
| Msa0521050 | Msa0835420 | 0.822119 | 2.809122e-53 | -8.615850e-47 |
| Msa0526540 | Msa0835420 | 0.832763 | 7.851452e-56 | -8.615850e-47 |
| Msa0576940 | Msa0835420 | 0.820565 | 6.413202e-53 | -8.615850e-47 |
| Msa0581070 | Msa0835420 | 0.800573 | 1.352867e-48 | -8.615850e-47 |
| Msa0581110 | Msa0835420 | 0.823898 | 1.081075e-53 | -8.615850e-47 |
| Msa0588360 | Msa0835420 | 0.813158 | 2.948461e-51 | -8.615850e-47 |
| Msa0589190 | Msa0835420 | 0.805073 | 1.591534e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835420 | MtrunA17_Chr5g0401391 | 97.810 | 137 | 2 | 1 | 1 | 136 | 1 | 137 | 5.04e-97 | 275 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835420 | AT1G07830.1 | 71.528 | 144 | 33 | 3 | 1 | 136 | 1 | 144 | 4.58e-67 | 199 |
Find 51 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCATTTGGAGCTTAAA+TGG | 0.098768 | 5_4:-8749236 | Msa0835420:three_prime_UTR |
| ATGGTCTTTGATGACTTAAA+AGG | 0.289344 | 5_4:-8749547 | Msa0835420:exon |
| CTGAATTGCGTCTGAAATCT+TGG | 0.295639 | 5_4:-8750023 | Msa0835420:CDS |
| GGGGTTACTCACTCATCATT+TGG | 0.370278 | 5_4:-8749247 | Msa0835420:three_prime_UTR |
| TGAGACTGTTAAAGAAATAA+AGG | 0.381017 | 5_4:-8749303 | Msa0835420:three_prime_UTR |
| TTTGGGTATGCTGTAAGAAT+AGG | 0.395902 | 5_4:-8749506 | Msa0835420:three_prime_UTR |
| CCCTCTTCCGGAGTTCTTTG+AGG | 0.397007 | 5_4:-8750238 | Msa0835420:CDS |
| GAGATGAAGAAAATGATAAA+TGG | 0.401349 | 5_4:-8749566 | Msa0835420:CDS |
| TTAGGTAAGCGCTCCGGGTT+AGG | 0.401390 | 5_4:+8749907 | None:intergenic |
| GAATAGGACATCTACTTTCA+TGG | 0.415235 | 5_4:-8749490 | Msa0835420:three_prime_UTR |
| GTTGTGGTATGTGTTGTTAA+AGG | 0.420053 | 5_4:-8749986 | Msa0835420:CDS |
| AACGAGACACCAGTTGTCTA+TGG | 0.421926 | 5_4:-8750204 | Msa0835420:intron |
| GATAATAAGCTCACATCTCA+TGG | 0.425888 | 5_4:-8749269 | Msa0835420:three_prime_UTR |
| TTCACCCACAATTATCAGCT+TGG | 0.435200 | 5_4:+8749206 | None:intergenic |
| TGAATTGCGTCTGAAATCTT+GGG | 0.436291 | 5_4:-8750022 | Msa0835420:CDS |
| TGCTGTTAGAAACCCTCTTC+CGG | 0.440920 | 5_4:-8750250 | Msa0835420:CDS |
| ACAATGGTTAAGTGACTCTC+AGG | 0.460628 | 5_4:+8749375 | None:intergenic |
| TCAGCAGACCTCCTTGCGTC+TGG | 0.463615 | 5_4:+8749587 | None:intergenic |
| TCATCATTTGGAGCTTAAAT+GGG | 0.468977 | 5_4:-8749235 | Msa0835420:three_prime_UTR |
| ATACCTTAGGTAAGCGCTCC+GGG | 0.470522 | 5_4:+8749902 | None:intergenic |
| AAACTCCACAATTATAAGCT+TGG | 0.478967 | 5_4:+8749178 | None:intergenic |
| GAACTTGCGCTTTCCTAACC+CGG | 0.481233 | 5_4:-8749920 | Msa0835420:CDS |
| GCCTCAAAGAACTCCGGAAG+AGG | 0.493349 | 5_4:+8750237 | None:intergenic |
| AAAATCCAAGCTGATAATTG+TGG | 0.494181 | 5_4:-8749211 | Msa0835420:three_prime_UTR |
| TATTTCATACCATAGACAAC+TGG | 0.503485 | 5_4:+8750195 | None:intergenic |
| CTCGTGAACATTCTGCAGAT+GGG | 0.512970 | 5_4:+8749340 | None:intergenic |
| AATACCTTAGGTAAGCGCTC+CGG | 0.514447 | 5_4:+8749901 | None:intergenic |
| AATCATGTATTTGAACAGAC+TGG | 0.525051 | 5_4:+8749444 | None:intergenic |
| AAATCCAAGCTGATAATTGT+GGG | 0.535749 | 5_4:-8749210 | Msa0835420:three_prime_UTR |
| GCTCGTGAACATTCTGCAGA+TGG | 0.538875 | 5_4:+8749339 | None:intergenic |
| AAACAGTATTCCACTACAGC+TGG | 0.543067 | 5_4:-8750273 | Msa0835420:CDS |
| TATTTCTTTAACAGTCTCAC+AGG | 0.543526 | 5_4:+8749307 | None:intergenic |
| ACACATACCACAACTTATGA+AGG | 0.545630 | 5_4:+8749995 | None:intergenic |
| TAACACCAAGCTTATAATTG+TGG | 0.546576 | 5_4:-8749183 | Msa0835420:three_prime_UTR |
| TTTGTTAGGTCGGAGTTGGA+AGG | 0.551769 | 5_4:-8750049 | Msa0835420:intron |
| TGTATTTGAACAGACTGGCT+TGG | 0.552486 | 5_4:+8749449 | None:intergenic |
| ATAATAAGCTCACATCTCAT+GGG | 0.553972 | 5_4:-8749268 | Msa0835420:three_prime_UTR |
| GGGATGACCTTCATAAGTTG+TGG | 0.556409 | 5_4:-8750002 | Msa0835420:CDS |
| TCTAACAGCACCAGCTGTAG+TGG | 0.557909 | 5_4:+8750263 | None:intergenic |
| TAACCCGGAGCGCTTACCTA+AGG | 0.570629 | 5_4:-8749905 | Msa0835420:intron |
| CTGTCTGCCTCAAAGAACTC+CGG | 0.578032 | 5_4:+8750231 | None:intergenic |
| TGGGGTTCATTTGACGACAA+TGG | 0.593531 | 5_4:+8749359 | None:intergenic |
| CCTCAAAGAACTCCGGAAGA+GGG | 0.599992 | 5_4:+8750238 | None:intergenic |
| CGATTGAAGAACCAGACGCA+AGG | 0.611981 | 5_4:-8749598 | Msa0835420:CDS |
| TAATAAGCTCACATCTCATG+GGG | 0.625202 | 5_4:-8749267 | Msa0835420:three_prime_UTR |
| GACTGTTAAAGAAATAAAGG+TGG | 0.634963 | 5_4:-8749300 | Msa0835420:three_prime_UTR |
| TCGTGAACATTCTGCAGATG+GGG | 0.641508 | 5_4:+8749341 | None:intergenic |
| CAGTAAGCACATGCTTGATG+CGG | 0.642610 | 5_4:+8749627 | None:intergenic |
| TTGAAGAACCAGACGCAAGG+AGG | 0.691763 | 5_4:-8749595 | Msa0835420:CDS |
| CAATGGTTAAGTGACTCTCA+GGG | 0.702841 | 5_4:+8749376 | None:intergenic |
| AATAAGCTCACATCTCATGG+GGG | 0.768256 | 5_4:-8749266 | Msa0835420:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATGTTAAATTTCGTAT+GGG | - | chr5_4:8749765-8749784 | Msa0835420:intron | 15.0% |
| !! | TAAAATGTTAAATTTCGTAT+GGG | - | chr5_4:8749765-8749784 | Msa0835420:intron | 15.0% |
| !!! | ATAGTTTTACCATTTTTGTT+AGG | - | chr5_4:8749430-8749449 | Msa0835420:three_prime_UTR | 20.0% |
| !! | GTAAAATGTTAAATTTCGTA+TGG | - | chr5_4:8749764-8749783 | Msa0835420:intron | 20.0% |
| !!! | GATTTAATTTATGTGAAATC+AGG | - | chr5_4:8749827-8749846 | Msa0835420:intron | 20.0% |
| !!! | ATAGTTTTACCATTTTTGTT+AGG | - | chr5_4:8749430-8749449 | Msa0835420:three_prime_UTR | 20.0% |
| !! | GTAAAATGTTAAATTTCGTA+TGG | - | chr5_4:8749764-8749783 | Msa0835420:intron | 20.0% |
| !!! | GATTTAATTTATGTGAAATC+AGG | - | chr5_4:8749827-8749846 | Msa0835420:intron | 20.0% |
| ! | TATAAGAAAACAAAGTGATG+AGG | + | chr5_4:8749413-8749432 | None:intergenic | 25.0% |
| !!! | TTTTACCATTTTTGTTAGGT+CGG | - | chr5_4:8749434-8749453 | Msa0835420:three_prime_UTR | 25.0% |
| ! | AAAAAGTGAAGAAATACCTT+AGG | + | chr5_4:8749607-8749626 | None:intergenic | 25.0% |
| ! | GAGATGAAGAAAATGATAAA+TGG | - | chr5_4:8749927-8749946 | Msa0835420:CDS | 25.0% |
| !! | ATATGTTTTCGTTGCATTTT+TGG | - | chr5_4:8749969-8749988 | Msa0835420:CDS | 25.0% |
| !! | TATGTTTTCGTTGCATTTTT+GGG | - | chr5_4:8749970-8749989 | Msa0835420:CDS | 25.0% |
| ! | TGAGACTGTTAAAGAAATAA+AGG | - | chr5_4:8750190-8750209 | Msa0835420:intron | 25.0% |
| ! | TATAAGAAAACAAAGTGATG+AGG | + | chr5_4:8749413-8749432 | None:intergenic | 25.0% |
| !!! | TTTTACCATTTTTGTTAGGT+CGG | - | chr5_4:8749434-8749453 | Msa0835420:three_prime_UTR | 25.0% |
| ! | AAAAAGTGAAGAAATACCTT+AGG | + | chr5_4:8749607-8749626 | None:intergenic | 25.0% |
| ! | GAGATGAAGAAAATGATAAA+TGG | - | chr5_4:8749927-8749946 | Msa0835420:CDS | 25.0% |
| !! | ATATGTTTTCGTTGCATTTT+TGG | - | chr5_4:8749969-8749988 | Msa0835420:CDS | 25.0% |
| !! | TATGTTTTCGTTGCATTTTT+GGG | - | chr5_4:8749970-8749989 | Msa0835420:CDS | 25.0% |
| ! | TGAGACTGTTAAAGAAATAA+AGG | - | chr5_4:8750190-8750209 | Msa0835420:intron | 25.0% |
| TATTTCATACCATAGACAAC+TGG | + | chr5_4:8749301-8749320 | None:intergenic | 30.0% | |
| CCTATTCTATTGAAAAGAAG+AGG | + | chr5_4:8749328-8749347 | None:intergenic | 30.0% | |
| ! | CCTCTTCTTTTCAATAGAAT+AGG | - | chr5_4:8749325-8749344 | Msa0835420:three_prime_UTR | 30.0% |
| TTTCATTATAGCCACACATT+AGG | - | chr5_4:8749367-8749386 | Msa0835420:three_prime_UTR | 30.0% | |
| !!! | ACTTTTTTGTACCTAATGTG+TGG | + | chr5_4:8749381-8749400 | None:intergenic | 30.0% |
| !!! | ATTTCTTCACTTTTTACACC+TGG | - | chr5_4:8749612-8749631 | Msa0835420:CDS | 30.0% |
| ! | TTTTGTTACCCTTAGTTATG+TGG | - | chr5_4:8749654-8749673 | Msa0835420:intron | 30.0% |
| ATCAATGTCCACATAACTAA+GGG | + | chr5_4:8749665-8749684 | None:intergenic | 30.0% | |
| TATCAATGTCCACATAACTA+AGG | + | chr5_4:8749666-8749685 | None:intergenic | 30.0% | |
| AGTTATGTGGACATTGATAT+AGG | - | chr5_4:8749667-8749686 | Msa0835420:intron | 30.0% | |
| ATGTTAAATTTCGTATGGGT+TGG | - | chr5_4:8749769-8749788 | Msa0835420:intron | 30.0% | |
| TGTTAAATTTCGTATGGGTT+GGG | - | chr5_4:8749770-8749789 | Msa0835420:intron | 30.0% | |
| ! | ATGGTCTTTGATGACTTAAA+AGG | - | chr5_4:8749946-8749965 | Msa0835420:CDS | 30.0% |
| AATCATGTATTTGAACAGAC+TGG | + | chr5_4:8750052-8750071 | None:intergenic | 30.0% | |
| TATTTCTTTAACAGTCTCAC+AGG | + | chr5_4:8750189-8750208 | None:intergenic | 30.0% | |
| GACTGTTAAAGAAATAAAGG+TGG | - | chr5_4:8750193-8750212 | Msa0835420:intron | 30.0% | |
| ATAATAAGCTCACATCTCAT+GGG | - | chr5_4:8750225-8750244 | Msa0835420:CDS | 30.0% | |
| ! | TCATCATTTGGAGCTTAAAT+GGG | - | chr5_4:8750258-8750277 | Msa0835420:CDS | 30.0% |
| AAAATCCAAGCTGATAATTG+TGG | - | chr5_4:8750282-8750301 | Msa0835420:CDS | 30.0% | |
| AAATCCAAGCTGATAATTGT+GGG | - | chr5_4:8750283-8750302 | Msa0835420:CDS | 30.0% | |
| TAACACCAAGCTTATAATTG+TGG | - | chr5_4:8750310-8750329 | Msa0835420:CDS | 30.0% | |
| AAACTCCACAATTATAAGCT+TGG | + | chr5_4:8750318-8750337 | None:intergenic | 30.0% | |
| TATTTCATACCATAGACAAC+TGG | + | chr5_4:8749301-8749320 | None:intergenic | 30.0% | |
| CCTATTCTATTGAAAAGAAG+AGG | + | chr5_4:8749328-8749347 | None:intergenic | 30.0% | |
| ! | CCTCTTCTTTTCAATAGAAT+AGG | - | chr5_4:8749325-8749344 | Msa0835420:three_prime_UTR | 30.0% |
| TTTCATTATAGCCACACATT+AGG | - | chr5_4:8749367-8749386 | Msa0835420:three_prime_UTR | 30.0% | |
| !!! | ACTTTTTTGTACCTAATGTG+TGG | + | chr5_4:8749381-8749400 | None:intergenic | 30.0% |
| !!! | ATTTCTTCACTTTTTACACC+TGG | - | chr5_4:8749612-8749631 | Msa0835420:CDS | 30.0% |
| ! | TTTTGTTACCCTTAGTTATG+TGG | - | chr5_4:8749654-8749673 | Msa0835420:intron | 30.0% |
| ATCAATGTCCACATAACTAA+GGG | + | chr5_4:8749665-8749684 | None:intergenic | 30.0% | |
| TATCAATGTCCACATAACTA+AGG | + | chr5_4:8749666-8749685 | None:intergenic | 30.0% | |
| AGTTATGTGGACATTGATAT+AGG | - | chr5_4:8749667-8749686 | Msa0835420:intron | 30.0% | |
| ATGTTAAATTTCGTATGGGT+TGG | - | chr5_4:8749769-8749788 | Msa0835420:intron | 30.0% | |
| TGTTAAATTTCGTATGGGTT+GGG | - | chr5_4:8749770-8749789 | Msa0835420:intron | 30.0% | |
| ! | ATGGTCTTTGATGACTTAAA+AGG | - | chr5_4:8749946-8749965 | Msa0835420:CDS | 30.0% |
| AATCATGTATTTGAACAGAC+TGG | + | chr5_4:8750052-8750071 | None:intergenic | 30.0% | |
| TATTTCTTTAACAGTCTCAC+AGG | + | chr5_4:8750189-8750208 | None:intergenic | 30.0% | |
| GACTGTTAAAGAAATAAAGG+TGG | - | chr5_4:8750193-8750212 | Msa0835420:intron | 30.0% | |
| ATAATAAGCTCACATCTCAT+GGG | - | chr5_4:8750225-8750244 | Msa0835420:CDS | 30.0% | |
| ! | TCATCATTTGGAGCTTAAAT+GGG | - | chr5_4:8750258-8750277 | Msa0835420:CDS | 30.0% |
| AAAATCCAAGCTGATAATTG+TGG | - | chr5_4:8750282-8750301 | Msa0835420:CDS | 30.0% | |
| AAATCCAAGCTGATAATTGT+GGG | - | chr5_4:8750283-8750302 | Msa0835420:CDS | 30.0% | |
| TAACACCAAGCTTATAATTG+TGG | - | chr5_4:8750310-8750329 | Msa0835420:CDS | 30.0% | |
| AAACTCCACAATTATAAGCT+TGG | + | chr5_4:8750318-8750337 | None:intergenic | 30.0% | |
| AATGCTCTTGCCAAAAACAT+TGG | + | chr5_4:8749166-8749185 | None:intergenic | 35.0% | |
| !!! | AGTGGAATACTGTTTTGATC+TGG | + | chr5_4:8749215-8749234 | None:intergenic | 35.0% |
| ! | TGAATTGCGTCTGAAATCTT+GGG | - | chr5_4:8749471-8749490 | Msa0835420:three_prime_UTR | 35.0% |
| ACACATACCACAACTTATGA+AGG | + | chr5_4:8749501-8749520 | None:intergenic | 35.0% | |
| ! | GTTGTGGTATGTGTTGTTAA+AGG | - | chr5_4:8749507-8749526 | Msa0835420:three_prime_UTR | 35.0% |
| ATTGATATAGGAAATCGCAG+TGG | - | chr5_4:8749679-8749698 | Msa0835420:intron | 35.0% | |
| ! | GTTAAATTTCGTATGGGTTG+GGG | - | chr5_4:8749771-8749790 | Msa0835420:intron | 35.0% |
| !! | TTAAATTTCGTATGGGTTGG+GGG | - | chr5_4:8749772-8749791 | Msa0835420:intron | 35.0% |
| TTTGGGTATGCTGTAAGAAT+AGG | - | chr5_4:8749987-8750006 | Msa0835420:CDS | 35.0% | |
| GAATAGGACATCTACTTTCA+TGG | - | chr5_4:8750003-8750022 | Msa0835420:CDS | 35.0% | |
| GATAATAAGCTCACATCTCA+TGG | - | chr5_4:8750224-8750243 | Msa0835420:CDS | 35.0% | |
| TAATAAGCTCACATCTCATG+GGG | - | chr5_4:8750226-8750245 | Msa0835420:CDS | 35.0% | |
| ! | CTCATCATTTGGAGCTTAAA+TGG | - | chr5_4:8750257-8750276 | Msa0835420:CDS | 35.0% |
| AATGCTCTTGCCAAAAACAT+TGG | + | chr5_4:8749166-8749185 | None:intergenic | 35.0% | |
| !!! | AGTGGAATACTGTTTTGATC+TGG | + | chr5_4:8749215-8749234 | None:intergenic | 35.0% |
| ! | TGAATTGCGTCTGAAATCTT+GGG | - | chr5_4:8749471-8749490 | Msa0835420:three_prime_UTR | 35.0% |
| ACACATACCACAACTTATGA+AGG | + | chr5_4:8749501-8749520 | None:intergenic | 35.0% | |
| ! | GTTGTGGTATGTGTTGTTAA+AGG | - | chr5_4:8749507-8749526 | Msa0835420:three_prime_UTR | 35.0% |
| ATTGATATAGGAAATCGCAG+TGG | - | chr5_4:8749679-8749698 | Msa0835420:intron | 35.0% | |
| ! | GTTAAATTTCGTATGGGTTG+GGG | - | chr5_4:8749771-8749790 | Msa0835420:intron | 35.0% |
| !! | TTAAATTTCGTATGGGTTGG+GGG | - | chr5_4:8749772-8749791 | Msa0835420:intron | 35.0% |
| TTTGGGTATGCTGTAAGAAT+AGG | - | chr5_4:8749987-8750006 | Msa0835420:CDS | 35.0% | |
| GAATAGGACATCTACTTTCA+TGG | - | chr5_4:8750003-8750022 | Msa0835420:CDS | 35.0% | |
| GATAATAAGCTCACATCTCA+TGG | - | chr5_4:8750224-8750243 | Msa0835420:CDS | 35.0% | |
| TAATAAGCTCACATCTCATG+GGG | - | chr5_4:8750226-8750245 | Msa0835420:CDS | 35.0% | |
| ! | CTCATCATTTGGAGCTTAAA+TGG | - | chr5_4:8750257-8750276 | Msa0835420:CDS | 35.0% |
| AAACAGTATTCCACTACAGC+TGG | - | chr5_4:8749220-8749239 | Msa0835420:three_prime_UTR | 40.0% | |
| CAACTCCGACCTAACAAAAA+TGG | + | chr5_4:8749442-8749461 | None:intergenic | 40.0% | |
| ! | CATTTTTGTTAGGTCGGAGT+TGG | - | chr5_4:8749440-8749459 | Msa0835420:three_prime_UTR | 40.0% |
| ! | CTGAATTGCGTCTGAAATCT+TGG | - | chr5_4:8749470-8749489 | Msa0835420:three_prime_UTR | 40.0% |
| ! | GTGGTGCTTTTATCAACGTT+TGG | - | chr5_4:8749701-8749720 | Msa0835420:intron | 40.0% |
| !! | TAAATTTCGTATGGGTTGGG+GGG | - | chr5_4:8749773-8749792 | Msa0835420:intron | 40.0% |
| ! | TGTATTTGAACAGACTGGCT+TGG | + | chr5_4:8750047-8750066 | None:intergenic | 40.0% |
| CAATGGTTAAGTGACTCTCA+GGG | + | chr5_4:8750120-8750139 | None:intergenic | 40.0% | |
| ACAATGGTTAAGTGACTCTC+AGG | + | chr5_4:8750121-8750140 | None:intergenic | 40.0% | |
| AATAAGCTCACATCTCATGG+GGG | - | chr5_4:8750227-8750246 | Msa0835420:CDS | 40.0% | |
| TTCACCCACAATTATCAGCT+TGG | + | chr5_4:8750290-8750309 | None:intergenic | 40.0% | |
| AAACAGTATTCCACTACAGC+TGG | - | chr5_4:8749220-8749239 | Msa0835420:three_prime_UTR | 40.0% | |
| CAACTCCGACCTAACAAAAA+TGG | + | chr5_4:8749442-8749461 | None:intergenic | 40.0% | |
| ! | CATTTTTGTTAGGTCGGAGT+TGG | - | chr5_4:8749440-8749459 | Msa0835420:three_prime_UTR | 40.0% |
| ! | CTGAATTGCGTCTGAAATCT+TGG | - | chr5_4:8749470-8749489 | Msa0835420:three_prime_UTR | 40.0% |
| ! | GTGGTGCTTTTATCAACGTT+TGG | - | chr5_4:8749701-8749720 | Msa0835420:intron | 40.0% |
| !! | TAAATTTCGTATGGGTTGGG+GGG | - | chr5_4:8749773-8749792 | Msa0835420:intron | 40.0% |
| ! | TGTATTTGAACAGACTGGCT+TGG | + | chr5_4:8750047-8750066 | None:intergenic | 40.0% |
| CAATGGTTAAGTGACTCTCA+GGG | + | chr5_4:8750120-8750139 | None:intergenic | 40.0% | |
| ACAATGGTTAAGTGACTCTC+AGG | + | chr5_4:8750121-8750140 | None:intergenic | 40.0% | |
| AATAAGCTCACATCTCATGG+GGG | - | chr5_4:8750227-8750246 | Msa0835420:CDS | 40.0% | |
| TTCACCCACAATTATCAGCT+TGG | + | chr5_4:8750290-8750309 | None:intergenic | 40.0% | |
| TGCTGTTAGAAACCCTCTTC+CGG | - | chr5_4:8749243-8749262 | Msa0835420:three_prime_UTR | 45.0% | |
| AACGAGACACCAGTTGTCTA+TGG | - | chr5_4:8749289-8749308 | Msa0835420:three_prime_UTR | 45.0% | |
| TTTGTTAGGTCGGAGTTGGA+AGG | - | chr5_4:8749444-8749463 | Msa0835420:three_prime_UTR | 45.0% | |
| GGGATGACCTTCATAAGTTG+TGG | - | chr5_4:8749491-8749510 | Msa0835420:three_prime_UTR | 45.0% | |
| AATACCTTAGGTAAGCGCTC+CGG | + | chr5_4:8749595-8749614 | None:intergenic | 45.0% | |
| GATATAGGAAATCGCAGTGG+TGG | - | chr5_4:8749682-8749701 | Msa0835420:intron | 45.0% | |
| CAGTAAGCACATGCTTGATG+CGG | + | chr5_4:8749869-8749888 | None:intergenic | 45.0% | |
| TGGGGTTCATTTGACGACAA+TGG | + | chr5_4:8750137-8750156 | None:intergenic | 45.0% | |
| TCGTGAACATTCTGCAGATG+GGG | + | chr5_4:8750155-8750174 | None:intergenic | 45.0% | |
| CTCGTGAACATTCTGCAGAT+GGG | + | chr5_4:8750156-8750175 | None:intergenic | 45.0% | |
| GGGGTTACTCACTCATCATT+TGG | - | chr5_4:8750246-8750265 | Msa0835420:CDS | 45.0% | |
| TGCTGTTAGAAACCCTCTTC+CGG | - | chr5_4:8749243-8749262 | Msa0835420:three_prime_UTR | 45.0% | |
| AACGAGACACCAGTTGTCTA+TGG | - | chr5_4:8749289-8749308 | Msa0835420:three_prime_UTR | 45.0% | |
| TTTGTTAGGTCGGAGTTGGA+AGG | - | chr5_4:8749444-8749463 | Msa0835420:three_prime_UTR | 45.0% | |
| GGGATGACCTTCATAAGTTG+TGG | - | chr5_4:8749491-8749510 | Msa0835420:three_prime_UTR | 45.0% | |
| AATACCTTAGGTAAGCGCTC+CGG | + | chr5_4:8749595-8749614 | None:intergenic | 45.0% | |
| GATATAGGAAATCGCAGTGG+TGG | - | chr5_4:8749682-8749701 | Msa0835420:intron | 45.0% | |
| CAGTAAGCACATGCTTGATG+CGG | + | chr5_4:8749869-8749888 | None:intergenic | 45.0% | |
| TGGGGTTCATTTGACGACAA+TGG | + | chr5_4:8750137-8750156 | None:intergenic | 45.0% | |
| TCGTGAACATTCTGCAGATG+GGG | + | chr5_4:8750155-8750174 | None:intergenic | 45.0% | |
| CTCGTGAACATTCTGCAGAT+GGG | + | chr5_4:8750156-8750175 | None:intergenic | 45.0% | |
| GGGGTTACTCACTCATCATT+TGG | - | chr5_4:8750246-8750265 | Msa0835420:CDS | 45.0% | |
| TCTAACAGCACCAGCTGTAG+TGG | + | chr5_4:8749233-8749252 | None:intergenic | 50.0% | |
| CCTCAAAGAACTCCGGAAGA+GGG | + | chr5_4:8749258-8749277 | None:intergenic | 50.0% | |
| CTGTCTGCCTCAAAGAACTC+CGG | + | chr5_4:8749265-8749284 | None:intergenic | 50.0% | |
| GAACTTGCGCTTTCCTAACC+CGG | - | chr5_4:8749573-8749592 | Msa0835420:CDS | 50.0% | |
| ATACCTTAGGTAAGCGCTCC+GGG | + | chr5_4:8749594-8749613 | None:intergenic | 50.0% | |
| CAACACGCGTAAATCAGACC+AGG | + | chr5_4:8749633-8749652 | None:intergenic | 50.0% | |
| CGATTGAAGAACCAGACGCA+AGG | - | chr5_4:8749895-8749914 | Msa0835420:intron | 50.0% | |
| TTGAAGAACCAGACGCAAGG+AGG | - | chr5_4:8749898-8749917 | Msa0835420:intron | 50.0% | |
| GCTCGTGAACATTCTGCAGA+TGG | + | chr5_4:8750157-8750176 | None:intergenic | 50.0% | |
| TCTAACAGCACCAGCTGTAG+TGG | + | chr5_4:8749233-8749252 | None:intergenic | 50.0% | |
| CCTCAAAGAACTCCGGAAGA+GGG | + | chr5_4:8749258-8749277 | None:intergenic | 50.0% | |
| CTGTCTGCCTCAAAGAACTC+CGG | + | chr5_4:8749265-8749284 | None:intergenic | 50.0% | |
| GAACTTGCGCTTTCCTAACC+CGG | - | chr5_4:8749573-8749592 | Msa0835420:CDS | 50.0% | |
| ATACCTTAGGTAAGCGCTCC+GGG | + | chr5_4:8749594-8749613 | None:intergenic | 50.0% | |
| CAACACGCGTAAATCAGACC+AGG | + | chr5_4:8749633-8749652 | None:intergenic | 50.0% | |
| CGATTGAAGAACCAGACGCA+AGG | - | chr5_4:8749895-8749914 | Msa0835420:intron | 50.0% | |
| TTGAAGAACCAGACGCAAGG+AGG | - | chr5_4:8749898-8749917 | Msa0835420:intron | 50.0% | |
| GCTCGTGAACATTCTGCAGA+TGG | + | chr5_4:8750157-8750176 | None:intergenic | 50.0% | |
| CCCTCTTCCGGAGTTCTTTG+AGG | - | chr5_4:8749255-8749274 | Msa0835420:three_prime_UTR | 55.0% | |
| GCCTCAAAGAACTCCGGAAG+AGG | + | chr5_4:8749259-8749278 | None:intergenic | 55.0% | |
| TTAGGTAAGCGCTCCGGGTT+AGG | + | chr5_4:8749589-8749608 | None:intergenic | 55.0% | |
| ! | TAACCCGGAGCGCTTACCTA+AGG | - | chr5_4:8749588-8749607 | Msa0835420:CDS | 55.0% |
| GGTTGGGGGGAAACTGTTCA+CGG | - | chr5_4:8749786-8749805 | Msa0835420:intron | 55.0% | |
| CCCTCTTCCGGAGTTCTTTG+AGG | - | chr5_4:8749255-8749274 | Msa0835420:three_prime_UTR | 55.0% | |
| GCCTCAAAGAACTCCGGAAG+AGG | + | chr5_4:8749259-8749278 | None:intergenic | 55.0% | |
| TTAGGTAAGCGCTCCGGGTT+AGG | + | chr5_4:8749589-8749608 | None:intergenic | 55.0% | |
| ! | TAACCCGGAGCGCTTACCTA+AGG | - | chr5_4:8749588-8749607 | Msa0835420:CDS | 55.0% |
| GGTTGGGGGGAAACTGTTCA+CGG | - | chr5_4:8749786-8749805 | Msa0835420:intron | 55.0% | |
| TCAGCAGACCTCCTTGCGTC+TGG | + | chr5_4:8749909-8749928 | None:intergenic | 60.0% | |
| TCAGCAGACCTCCTTGCGTC+TGG | + | chr5_4:8749909-8749928 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8749161 | 8750354 | 8749161 | ID=Msa0835420;Name=Msa0835420 |
| chr5_4 | mRNA | 8749161 | 8750354 | 8749161 | ID=Msa0835420-mRNA-1;Parent=Msa0835420;Name=Msa0835420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=5|1|1|1|1|1|3|398|136 |
| chr5_4 | exon | 8749161 | 8749666 | 8749161 | ID=Msa0835420-mRNA-1:exon:3855;Parent=Msa0835420-mRNA-1 |
| chr5_4 | exon | 8749906 | 8750063 | 8749906 | ID=Msa0835420-mRNA-1:exon:3854;Parent=Msa0835420-mRNA-1 |
| chr5_4 | exon | 8750205 | 8750354 | 8750205 | ID=Msa0835420-mRNA-1:exon:3853;Parent=Msa0835420-mRNA-1 |
| chr5_4 | five_prime_UTR | 8750350 | 8750354 | 8750350 | ID=Msa0835420-mRNA-1:five_prime_utr;Parent=Msa0835420-mRNA-1 |
| chr5_4 | CDS | 8750205 | 8750349 | 8750205 | ID=Msa0835420-mRNA-1:cds;Parent=Msa0835420-mRNA-1 |
| chr5_4 | CDS | 8749906 | 8750063 | 8749906 | ID=Msa0835420-mRNA-1:cds;Parent=Msa0835420-mRNA-1 |
| chr5_4 | CDS | 8749559 | 8749666 | 8749559 | ID=Msa0835420-mRNA-1:cds;Parent=Msa0835420-mRNA-1 |
| chr5_4 | three_prime_UTR | 8749161 | 8749558 | 8749161 | ID=Msa0835420-mRNA-1:three_prime_utr;Parent=Msa0835420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
