Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781700 | XP_003616193.3 | 87.259 | 675 | 6 | 2 | 1 | 675 | 13 | 607 | 0.0 | 1180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781700 | sp|Q9ZPS7|TMN3_ARATH | 68.085 | 658 | 129 | 3 | 18 | 675 | 16 | 592 | 0.0 | 893 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781700 | A0A396HU32 | 87.259 | 675 | 6 | 2 | 1 | 675 | 13 | 607 | 0.0 | 1180 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003840 | Msa0781700 | 0.810395 | 1.177527e-50 | -8.615850e-47 |
| Msa0049670 | Msa0781700 | -0.800096 | 1.691561e-48 | -8.615850e-47 |
| Msa0603310 | Msa0781700 | 0.806811 | 6.863077e-50 | -8.615850e-47 |
| Msa0625550 | Msa0781700 | -0.800610 | 1.329475e-48 | -8.615850e-47 |
| Msa0644340 | Msa0781700 | 0.815046 | 1.130019e-51 | -8.615850e-47 |
| Msa0654400 | Msa0781700 | -0.810445 | 1.148418e-50 | -8.615850e-47 |
| Msa0654500 | Msa0781700 | -0.807203 | 5.669081e-50 | -8.615850e-47 |
| Msa0676570 | Msa0781700 | -0.803669 | 3.122656e-49 | -8.615850e-47 |
| Msa0682110 | Msa0781700 | 0.800122 | 1.671394e-48 | -8.615850e-47 |
| Msa0690100 | Msa0781700 | -0.808371 | 3.201379e-50 | -8.615850e-47 |
| Msa0736560 | Msa0781700 | 0.911940 | 3.438747e-83 | -8.615850e-47 |
| Msa0744550 | Msa0781700 | 0.813404 | 2.604257e-51 | -8.615850e-47 |
| Msa0744710 | Msa0781700 | 0.803628 | 3.184230e-49 | -8.615850e-47 |
| Msa0781700 | Msa0812050 | 0.869169 | 3.787128e-66 | -8.615850e-47 |
| Msa0781700 | Msa0826240 | 0.802710 | 4.931256e-49 | -8.615850e-47 |
| Msa0781700 | Msa0856080 | 0.902017 | 1.488576e-78 | -8.615850e-47 |
| Msa0781700 | Msa0869320 | -0.805736 | 1.155796e-49 | -8.615850e-47 |
| Msa0781700 | Msa0934290 | -0.814340 | 1.619449e-51 | -8.615850e-47 |
| Msa0781700 | Msa0956600 | -0.819308 | 1.243154e-52 | -8.615850e-47 |
| Msa0781700 | Msa0971780 | -0.817751 | 2.803522e-52 | -8.615850e-47 |
| Msa0781700 | Msa1011140 | -0.806624 | 7.516792e-50 | -8.615850e-47 |
| Msa0781700 | Msa1026160 | -0.807026 | 6.178834e-50 | -8.615850e-47 |
| Msa0781700 | Msa1104020 | -0.809800 | 1.582277e-50 | -8.615850e-47 |
| Msa0781700 | Msa1121720 | -0.808479 | 3.035127e-50 | -8.615850e-47 |
| Msa0781700 | Msa1130410 | 0.806830 | 6.799887e-50 | -8.615850e-47 |
| Msa0781700 | Msa1185270 | 0.810633 | 1.046309e-50 | -8.615850e-47 |
| Msa0781700 | Msa1199540 | -0.805250 | 1.461508e-49 | -8.615850e-47 |
| Msa0781700 | Msa1219530 | -0.803917 | 2.772578e-49 | -8.615850e-47 |
| Msa0781700 | Msa1333220 | -0.811165 | 8.022997e-51 | -8.615850e-47 |
| Msa0781700 | Msa1356100 | -0.809884 | 1.517393e-50 | -8.615850e-47 |
| Msa0781700 | Msa1397560 | -0.807891 | 4.050384e-50 | -8.615850e-47 |
| Msa0781700 | Msa1409360 | -0.804907 | 1.724384e-49 | -8.615850e-47 |
| Msa0781700 | Msa1410480 | -0.801630 | 8.224278e-49 | -8.615850e-47 |
| Msa0781700 | Msa1410500 | -0.802758 | 4.818293e-49 | -8.615850e-47 |
| Msa0781700 | Msa1459920 | 0.800663 | 1.297003e-48 | -8.615850e-47 |
| Msa0375930 | Msa0781700 | -0.811711 | 6.105587e-51 | -8.615850e-47 |
| Msa0424570 | Msa0781700 | -0.811696 | 6.153019e-51 | -8.615850e-47 |
| Msa0427890 | Msa0781700 | -0.804499 | 2.097731e-49 | -8.615850e-47 |
| Msa0474120 | Msa0781700 | -0.809404 | 1.923860e-50 | -8.615850e-47 |
| Msa0480540 | Msa0781700 | 0.814856 | 1.245136e-51 | -8.615850e-47 |
| Msa0242720 | Msa0781700 | 0.803914 | 2.777410e-49 | -8.615850e-47 |
| Msa0294200 | Msa0781700 | 0.805018 | 1.634321e-49 | -8.615850e-47 |
| Msa0516000 | Msa0781700 | -0.807322 | 5.349765e-50 | -8.615850e-47 |
| Msa0559440 | Msa0781700 | -0.807696 | 4.454671e-50 | -8.615850e-47 |
| Msa0577960 | Msa0781700 | -0.800412 | 1.459045e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781700 | MtrunA17_Chr5g0434001 | 87.259 | 675 | 6 | 2 | 1 | 675 | 13 | 607 | 0.0 | 1180 |
| Msa0781700 | MtrunA17_Chr8g0375501 | 68.072 | 664 | 131 | 3 | 12 | 675 | 9 | 591 | 0.0 | 899 |
| Msa0781700 | MtrunA17_Chr6g0480551 | 67.766 | 667 | 133 | 3 | 9 | 675 | 4 | 588 | 0.0 | 895 |
| Msa0781700 | MtrunA17_Chr4g0026371 | 43.405 | 652 | 285 | 3 | 24 | 675 | 22 | 589 | 0.0 | 532 |
| Msa0781700 | MtrunA17_Chr8g0380651 | 37.557 | 655 | 317 | 9 | 26 | 675 | 22 | 589 | 6.80e-138 | 416 |
| Msa0781700 | MtrunA17_Chr2g0277491 | 37.920 | 654 | 314 | 10 | 26 | 675 | 18 | 583 | 4.51e-137 | 414 |
| Msa0781700 | MtrunA17_Chr8g0342031 | 29.542 | 721 | 374 | 12 | 3 | 675 | 14 | 648 | 1.39e-101 | 324 |
| Msa0781700 | MtrunA17_Chr1g0150181 | 29.201 | 726 | 374 | 14 | 1 | 675 | 1 | 637 | 2.78e-94 | 304 |
| Msa0781700 | MtrunA17_Chr3g0136881 | 28.488 | 688 | 359 | 10 | 35 | 675 | 35 | 636 | 9.32e-90 | 292 |
| Msa0781700 | MtrunA17_Chr4g0065301 | 24.754 | 711 | 383 | 18 | 31 | 675 | 32 | 656 | 1.81e-67 | 233 |
| Msa0781700 | MtrunA17_Chr5g0448371 | 24.332 | 748 | 408 | 16 | 1 | 675 | 3 | 665 | 5.05e-64 | 224 |
| Msa0781700 | MtrunA17_Chr3g0120461 | 25.787 | 508 | 288 | 9 | 171 | 675 | 238 | 659 | 4.15e-52 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781700 | AT2G01970.1 | 68.085 | 658 | 129 | 3 | 18 | 675 | 16 | 592 | 0.0 | 893 |
| Msa0781700 | AT5G37310.1 | 67.515 | 668 | 136 | 3 | 8 | 675 | 7 | 593 | 0.0 | 892 |
| Msa0781700 | AT5G37310.2 | 67.515 | 668 | 136 | 3 | 8 | 675 | 7 | 593 | 0.0 | 892 |
| Msa0781700 | AT1G14670.1 | 68.000 | 675 | 133 | 4 | 1 | 675 | 1 | 592 | 0.0 | 881 |
| Msa0781700 | AT1G08350.3 | 42.900 | 669 | 297 | 6 | 8 | 675 | 5 | 589 | 0.0 | 545 |
| Msa0781700 | AT1G08350.2 | 42.900 | 669 | 297 | 6 | 8 | 675 | 5 | 589 | 0.0 | 545 |
| Msa0781700 | AT1G08350.1 | 41.738 | 587 | 258 | 5 | 90 | 675 | 5 | 508 | 2.41e-156 | 461 |
| Msa0781700 | AT1G08350.4 | 39.614 | 621 | 281 | 6 | 8 | 627 | 5 | 532 | 5.07e-153 | 454 |
| Msa0781700 | AT1G10950.1 | 36.462 | 650 | 323 | 9 | 29 | 675 | 27 | 589 | 2.07e-130 | 397 |
| Msa0781700 | AT3G13772.1 | 29.885 | 696 | 343 | 11 | 33 | 675 | 38 | 641 | 8.33e-101 | 322 |
| Msa0781700 | AT1G55130.1 | 29.885 | 696 | 343 | 12 | 33 | 675 | 34 | 637 | 4.67e-97 | 312 |
| Msa0781700 | AT2G24170.1 | 29.385 | 667 | 339 | 10 | 56 | 675 | 56 | 637 | 3.65e-92 | 299 |
| Msa0781700 | AT5G10840.1 | 28.155 | 721 | 384 | 10 | 3 | 675 | 14 | 648 | 1.02e-91 | 298 |
| Msa0781700 | AT5G25100.1 | 27.624 | 724 | 388 | 10 | 2 | 675 | 7 | 644 | 9.09e-91 | 296 |
| Msa0781700 | AT5G25100.2 | 28.657 | 670 | 343 | 9 | 56 | 675 | 67 | 651 | 1.21e-88 | 290 |
| Msa0781700 | AT5G35160.1 | 27.016 | 496 | 270 | 9 | 186 | 675 | 221 | 630 | 6.35e-53 | 193 |
| Msa0781700 | AT5G35160.2 | 27.016 | 496 | 270 | 9 | 186 | 675 | 249 | 658 | 9.27e-53 | 193 |
| Msa0781700 | AT5G35160.3 | 27.016 | 496 | 270 | 9 | 186 | 675 | 249 | 658 | 9.27e-53 | 193 |
| Msa0781700 | AT5G35160.4 | 27.016 | 496 | 270 | 9 | 186 | 675 | 249 | 658 | 9.27e-53 | 193 |
| Msa0781700 | AT4G12650.1 | 25.826 | 484 | 272 | 8 | 195 | 675 | 253 | 652 | 4.37e-51 | 188 |
| Msa0781700 | AT2G24170.2 | 26.847 | 406 | 207 | 8 | 56 | 414 | 56 | 418 | 6.79e-42 | 158 |
Find 135 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGTAACCTCACCTTTAT+TGG | 0.159809 | 5_2:+64286637 | Msa0781700:CDS |
| TTCCTTTGTGGTGGATCAAC+TGG | 0.175262 | 5_2:+64287451 | Msa0781700:CDS |
| ATTAAGCAGTGATAGAAATT+TGG | 0.227532 | 5_2:-64287787 | None:intergenic |
| ACTATGATGACTTGCCAATT+TGG | 0.269300 | 5_2:+64285067 | Msa0781700:CDS |
| ACCTCACCTTTATTGGTATT+GGG | 0.275560 | 5_2:+64286644 | Msa0781700:CDS |
| TCAACTGGGTTGTTCATATA+TGG | 0.277084 | 5_2:+64287466 | Msa0781700:CDS |
| AACCTCACCTTTATTGGTAT+TGG | 0.284277 | 5_2:+64286643 | Msa0781700:CDS |
| TGCATTTCAGGTGAAAATTT+TGG | 0.287409 | 5_2:+64286484 | Msa0781700:intron |
| ACTTCCATCCAGTCTCTTCT+TGG | 0.288713 | 5_2:-64285743 | None:intergenic |
| TTGGTATTGGGTGGGATTGC+TGG | 0.299301 | 5_2:+64286656 | Msa0781700:CDS |
| CTATGATGACTTGCCAATTT+GGG | 0.300228 | 5_2:+64285068 | Msa0781700:CDS |
| GAACCTAAATAAGTAGTAAA+AGG | 0.310752 | 5_2:-64286173 | None:intergenic |
| ATCTTTATGCTTGCTCTAGT+TGG | 0.316172 | 5_2:+64285972 | Msa0781700:CDS |
| GTAGTAGAGTTCAATGAAAA+TGG | 0.321529 | 5_2:-64286807 | None:intergenic |
| GATATTAGGTCTTTCCTTTG+TGG | 0.336277 | 5_2:+64287439 | Msa0781700:intron |
| AATGAACAAAATGCTGTATA+TGG | 0.340162 | 5_2:-64286864 | None:intergenic |
| CCCTTCAATCATGTAATAGA+AGG | 0.351238 | 5_2:-64286087 | None:intergenic |
| AAATTAAAATAAAAGTTGTT+AGG | 0.355308 | 5_2:-64287845 | None:intergenic |
| AGCATCACATTCATAGCTTC+AGG | 0.355880 | 5_2:+64287887 | Msa0781700:three_prime_UTR |
| CTTCCAAGGAAACCCCAAAT+TGG | 0.359340 | 5_2:-64285081 | None:intergenic |
| CAGTAGGAGCTGCAATATAA+AGG | 0.360008 | 5_2:-64285607 | None:intergenic |
| TTACGGTACAAAGGTAGTTT+AGG | 0.361186 | 5_2:-64286740 | None:intergenic |
| TATGGTTTCTTTCTTATGCT+TGG | 0.371120 | 5_2:+64287577 | Msa0781700:CDS |
| TCATCAAGTGCCTCTTCATC+TGG | 0.382938 | 5_2:-64285720 | None:intergenic |
| TAGTGCTGCAGTGGAGTTAT+AGG | 0.383154 | 5_2:-64286576 | None:intergenic |
| ATCAAGAATTCAAGTTTGTA+AGG | 0.385654 | 5_2:-64284946 | None:intergenic |
| ATCCCACCCAATACCAATAA+AGG | 0.387694 | 5_2:-64286650 | None:intergenic |
| CAGATATTCCATTTGAGAAA+AGG | 0.390734 | 5_2:+64285301 | Msa0781700:CDS |
| TTGCCAATTTGGGGTTTCCT+TGG | 0.391409 | 5_2:+64285078 | Msa0781700:CDS |
| ATTTCACATATTCTGTCAAA+TGG | 0.396091 | 5_2:+64285271 | Msa0781700:CDS |
| GCGAACAAAGACTTAAATCT+TGG | 0.402258 | 5_2:-64285792 | None:intergenic |
| CCCACCTTGTTTGCATAAAA+CGG | 0.409711 | 5_2:-64283703 | None:intergenic |
| AAACTAACCTGGCGAACAAA+AGG | 0.410391 | 5_2:-64284759 | None:intergenic |
| GGAAAAGTCAACGACATGTT+TGG | 0.412145 | 5_2:+64283588 | Msa0781700:CDS |
| GTTTATGCTGTCTAAGATGA+TGG | 0.423947 | 5_2:-64286126 | None:intergenic |
| TTAGACCGTTTACTAGTTTG+TGG | 0.424430 | 5_2:+64285654 | Msa0781700:CDS |
| GAAGGAAGCTGCAGAATAAC+CGG | 0.424677 | 5_2:-64286069 | None:intergenic |
| TCCACTGCAGCACTACCCTT+TGG | 0.427646 | 5_2:+64286584 | Msa0781700:CDS |
| CCCATCACTTGGAAATCCAT+TGG | 0.429870 | 5_2:+64285355 | Msa0781700:CDS |
| AACAAAGCTCCCCTGTTGTA+TGG | 0.432106 | 5_2:-64286005 | None:intergenic |
| GCATTAACGTCCGGCATTGC+CGG | 0.432563 | 5_2:+64286050 | Msa0781700:CDS |
| TCCTTCTATTACATGATTGA+AGG | 0.433770 | 5_2:+64286086 | Msa0781700:CDS |
| CAGCAAAATCTCATTGCAAA+TGG | 0.434387 | 5_2:+64287726 | Msa0781700:three_prime_UTR |
| GGGAGCTTTGTTTACTGCAC+TGG | 0.435481 | 5_2:+64286016 | Msa0781700:CDS |
| CCGTAAAACTCTTCCTCAAA+TGG | 0.437640 | 5_2:+64286757 | Msa0781700:CDS |
| TTCGCAGCAGCACTTGGAAC+AGG | 0.438827 | 5_2:+64285810 | Msa0781700:CDS |
| TCTGAGCTATTCACACTTGA+GGG | 0.440042 | 5_2:-64287650 | None:intergenic |
| TTTCTTATGCTTGGAACTGT+GGG | 0.441101 | 5_2:+64287586 | Msa0781700:CDS |
| TCATTGATTGTTGTGAATCC+AGG | 0.445708 | 5_2:-64286202 | None:intergenic |
| GTCAAGTCCACAACAGCATT+CGG | 0.447696 | 5_2:-64285225 | None:intergenic |
| TTATTTAGGTTCCTTGAACC+TGG | 0.449957 | 5_2:+64286184 | Msa0781700:CDS |
| CACCTTTATTGGTATTGGGT+GGG | 0.453576 | 5_2:+64286648 | Msa0781700:CDS |
| CATCAGTTTCAAATCTTCCA+AGG | 0.455164 | 5_2:-64285095 | None:intergenic |
| ACCAATGGATTTCCAAGTGA+TGG | 0.455607 | 5_2:-64285356 | None:intergenic |
| CTTTCTTATGCTTGGAACTG+TGG | 0.458480 | 5_2:+64287585 | Msa0781700:CDS |
| GGTTTACTGAAGAGTAGTAT+AGG | 0.458814 | 5_2:+64287747 | Msa0781700:three_prime_UTR |
| GAGAATCATGGCAAGGAATC+CGG | 0.464820 | 5_2:-64285418 | None:intergenic |
| GAAGAAAAGAAAGAAGATCT+TGG | 0.467281 | 5_2:+64284889 | Msa0781700:CDS |
| AATCTCCCTAGGATACTTGT+TGG | 0.469937 | 5_2:-64286717 | None:intergenic |
| TCTTTGTTCGCAGCAGCACT+TGG | 0.472052 | 5_2:+64285804 | Msa0781700:CDS |
| GTTACTGTTCTTCTCTTGAC+CGG | 0.473664 | 5_2:+64285399 | Msa0781700:CDS |
| TTGTTGTGAATCCAGGTTCA+AGG | 0.476520 | 5_2:-64286195 | None:intergenic |
| ATTAGGTCTTTCCTTTGTGG+TGG | 0.477997 | 5_2:+64287442 | Msa0781700:intron |
| ATCTAACCTGGGATTATGAA+AGG | 0.482130 | 5_2:-64283728 | None:intergenic |
| TCCTTTGTGGTGGATCAACT+GGG | 0.485374 | 5_2:+64287452 | Msa0781700:CDS |
| TACATGGCTTGCATTTGCTA+TGG | 0.488624 | 5_2:+64287559 | Msa0781700:CDS |
| GTCGAACCAACAAGTATCCT+AGG | 0.489027 | 5_2:+64286711 | Msa0781700:CDS |
| TGCAGAATAACCGGCAATGC+CGG | 0.490602 | 5_2:-64286060 | None:intergenic |
| TTTATTGAATGCAGAAAATG+TGG | 0.491207 | 5_2:+64284867 | Msa0781700:intron |
| ACTACATATTTGCCAGTGTG+TGG | 0.492038 | 5_2:+64286825 | Msa0781700:CDS |
| CATGCAAGATCAGATATGTC+TGG | 0.493757 | 5_2:+64287508 | Msa0781700:CDS |
| AACTCTTCCTCAAATGGCTA+TGG | 0.495729 | 5_2:+64286763 | Msa0781700:CDS |
| TTAACTGGTAGTCTATTCTC+TGG | 0.501357 | 5_2:+64286509 | Msa0781700:CDS |
| ATCCTCACTCTCCCATCACT+TGG | 0.501660 | 5_2:+64285344 | Msa0781700:CDS |
| AAGTTCCACAAACTAGTAAA+CGG | 0.502516 | 5_2:-64285659 | None:intergenic |
| CTACATATTTGCCAGTGTGT+GGG | 0.507683 | 5_2:+64286826 | Msa0781700:CDS |
| CTTCCTCAAATGGCTATGGC+TGG | 0.509056 | 5_2:+64286767 | Msa0781700:CDS |
| TCAGATCATCGTTATAAAGA+AGG | 0.510924 | 5_2:+64283670 | Msa0781700:CDS |
| AATCCAGCCATAGCCATTTG+AGG | 0.511166 | 5_2:-64286770 | None:intergenic |
| AGAAGATAGAGAGGTAAATG+TGG | 0.520334 | 5_2:+64285248 | Msa0781700:CDS |
| TATTCCATTTGAGAAAAGGT+TGG | 0.520532 | 5_2:+64285305 | Msa0781700:CDS |
| TGGGACCCTTTCATAATCCC+AGG | 0.520558 | 5_2:+64283722 | Msa0781700:CDS |
| AAGTACGCGCATGAGAATCA+TGG | 0.523656 | 5_2:-64285430 | None:intergenic |
| CTAAATAAGTAGTAAAAGGC+AGG | 0.525859 | 5_2:-64286169 | None:intergenic |
| CCTTCTATTACATGATTGAA+GGG | 0.526700 | 5_2:+64286087 | Msa0781700:CDS |
| GTCATATACGCATTAACGTC+CGG | 0.529722 | 5_2:+64286041 | Msa0781700:CDS |
| TTCTGAGCTATTCACACTTG+AGG | 0.535196 | 5_2:-64287651 | None:intergenic |
| TCACCTTTATTGGTATTGGG+TGG | 0.535989 | 5_2:+64286647 | Msa0781700:CDS |
| AATAACCACAATTGTTCCAA+AGG | 0.538698 | 5_2:-64286600 | None:intergenic |
| AAGGTGCTTGAAACTCTGAT+TGG | 0.544875 | 5_2:-64286688 | None:intergenic |
| ATAGCTCAGAAGAAGCTCAC+TGG | 0.546157 | 5_2:+64287663 | Msa0781700:exon |
| TCTAACCTGGGATTATGAAA+GGG | 0.548279 | 5_2:-64283727 | None:intergenic |
| AACTAACCTGGCGAACAAAA+GGG | 0.550195 | 5_2:-64284758 | None:intergenic |
| TACATATTTGCCAGTGTGTG+GGG | 0.552002 | 5_2:+64286827 | Msa0781700:CDS |
| TCAATGAAAATGGCACTGAA+TGG | 0.553149 | 5_2:-64286797 | None:intergenic |
| TTTAATTTGAAATTATAGAG+AGG | 0.553772 | 5_2:+64287860 | Msa0781700:three_prime_UTR |
| CTTGATGACCAAGAAGAGAC+TGG | 0.553949 | 5_2:+64285735 | Msa0781700:CDS |
| AAAGATGCTGACAAGAAAAG+AGG | 0.554105 | 5_2:+64284996 | Msa0781700:CDS |
| ATACTTTCAACTTGCTGCTG+AGG | 0.554818 | 5_2:+64286937 | Msa0781700:CDS |
| CTGAGGATCATGAATGGTGG+TGG | 0.559393 | 5_2:+64286954 | Msa0781700:CDS |
| CCAATGGATTTCCAAGTGAT+GGG | 0.560035 | 5_2:-64285355 | None:intergenic |
| ACAGAGTAAAACAAAGCGCC+TGG | 0.561428 | 5_2:-64287692 | None:intergenic |
| TCCAAAGGGTAGTGCTGCAG+TGG | 0.561479 | 5_2:-64286585 | None:intergenic |
| ACATAACAAAATATTACGAT+AGG | 0.565576 | 5_2:+64285691 | Msa0781700:CDS |
| ACTACCCTTTGGAACAATTG+TGG | 0.569004 | 5_2:+64286595 | Msa0781700:CDS |
| TATGATGACTTGCCAATTTG+GGG | 0.574034 | 5_2:+64285069 | Msa0781700:CDS |
| AAATGATCCGAATGCTGTTG+TGG | 0.575333 | 5_2:+64285218 | Msa0781700:CDS |
| ATAACCACAATTGTTCCAAA+GGG | 0.579246 | 5_2:-64286599 | None:intergenic |
| ATGACCAAGAAGAGACTGGA+TGG | 0.583101 | 5_2:+64285739 | Msa0781700:CDS |
| TTCCAAGTGATGGGAGAGTG+AGG | 0.585433 | 5_2:-64285346 | None:intergenic |
| AGTAAAAGGCAGGTATTGAG+TGG | 0.586494 | 5_2:-64286159 | None:intergenic |
| AAAAGATGTTGACACAAATG+AGG | 0.586558 | 5_2:+64285119 | Msa0781700:CDS |
| AGTTAATAATAGAAAACCAA+TGG | 0.587731 | 5_2:-64285371 | None:intergenic |
| GACATTCAGCTTTCTTAACA+CGG | 0.594648 | 5_2:+64286544 | Msa0781700:CDS |
| GGATACTTGTTGGTTCGACA+AGG | 0.595560 | 5_2:-64286707 | None:intergenic |
| TAGGTTTACACCAGATGAAG+AGG | 0.600920 | 5_2:+64285710 | Msa0781700:CDS |
| TTGCTGCTGAGGATCATGAA+TGG | 0.608218 | 5_2:+64286948 | Msa0781700:CDS |
| GGCAGGTATTGAGTGGAGCA+CGG | 0.608542 | 5_2:-64286152 | None:intergenic |
| CAGACATATCTGATCTTGCA+TGG | 0.613786 | 5_2:-64287507 | None:intergenic |
| GCTATTCACACTTGAGGGAA+CGG | 0.614276 | 5_2:-64287645 | None:intergenic |
| CGCGCATGAGAATCATGGCA+AGG | 0.619445 | 5_2:-64285425 | None:intergenic |
| CTGCTGAGGATCATGAATGG+TGG | 0.620026 | 5_2:+64286951 | Msa0781700:CDS |
| ACTGGATGGAAGTATATCCA+TGG | 0.622758 | 5_2:+64285753 | Msa0781700:CDS |
| AATCTGATGACCCCACACAC+TGG | 0.627045 | 5_2:-64286837 | None:intergenic |
| TCGAACCAACAAGTATCCTA+GGG | 0.629597 | 5_2:+64286712 | Msa0781700:CDS |
| GGTAGTTTAGGAATCTCCCT+AGG | 0.629725 | 5_2:-64286728 | None:intergenic |
| AGGATCATGAATGGTGGTGG+AGG | 0.635786 | 5_2:+64286957 | Msa0781700:CDS |
| GGACTTGACAGAAGATAGAG+AGG | 0.642544 | 5_2:+64285239 | Msa0781700:CDS |
| TTATACAGCAGAAACAACAT+AGG | 0.656465 | 5_2:-64283627 | None:intergenic |
| GAAGCTCACTGGAATAAACC+AGG | 0.661450 | 5_2:+64287674 | Msa0781700:three_prime_UTR |
| ACCCAATACCAATAAAGGTG+AGG | 0.665590 | 5_2:-64286645 | None:intergenic |
| GATATCTGAACACATCACCA+TGG | 0.675998 | 5_2:-64285770 | None:intergenic |
| ACCCAGTTGATCCACCACAA+AGG | 0.682810 | 5_2:-64287453 | None:intergenic |
| GAAACAACATAGGATCACAA+TGG | 0.705943 | 5_2:-64283617 | None:intergenic |
| AATGATTTATGCAGTCACTG+TGG | 0.740309 | 5_2:+64286220 | Msa0781700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATCAAAATATATTTTAAA+GGG | - | chr5_2:64283780-64283799 | None:intergenic | 10.0% |
| !!! | TTTTTTTCAAAAGTATAAAT+TGG | - | chr5_2:64283813-64283832 | None:intergenic | 10.0% |
| !! | TGAAAAAAATATGAAAAAAT+TGG | + | chr5_2:64283824-64283843 | Msa0781700:intron | 10.0% |
| !! | GAAAAAAATATGAAAAAATT+GGG | + | chr5_2:64283825-64283844 | Msa0781700:intron | 10.0% |
| !!! | ATTAAATAGTATAATTTTTG+TGG | + | chr5_2:64284421-64284440 | Msa0781700:intron | 10.0% |
| !! | AAATTAAAATAAAAGTTGTT+AGG | - | chr5_2:64287848-64287867 | None:intergenic | 10.0% |
| !!! | GAGATCAAAATATATTTTAA+AGG | - | chr5_2:64283781-64283800 | None:intergenic | 15.0% |
| !! | ATGGTATTCATATAATATAA+AGG | + | chr5_2:64285879-64285898 | Msa0781700:intron | 15.0% |
| !! | TGAAAAAAATATCAATGTTA+TGG | + | chr5_2:64287044-64287063 | Msa0781700:intron | 15.0% |
| !! | GAAAAAAATATCAATGTTAT+GGG | + | chr5_2:64287045-64287064 | Msa0781700:intron | 15.0% |
| !! | AAATGACAAGTTATAAAATA+TGG | - | chr5_2:64287411-64287430 | None:intergenic | 15.0% |
| !!! | TCATTTTTTTACATGATATT+AGG | + | chr5_2:64287425-64287444 | Msa0781700:intron | 15.0% |
| !!! | TTTAATTTGAAATTATAGAG+AGG | + | chr5_2:64287860-64287879 | Msa0781700:three_prime_UTR | 15.0% |
| !!! | TTTTCAAAAGTATAAATTGG+AGG | - | chr5_2:64283810-64283829 | None:intergenic | 20.0% |
| !!! | AGACAGTAATAGAAAATTTT+GGG | - | chr5_2:64284809-64284828 | None:intergenic | 20.0% |
| !!! | AAGACAGTAATAGAAAATTT+TGG | - | chr5_2:64284810-64284829 | None:intergenic | 20.0% |
| !!! | CAATAAATTTTGGAACTATA+AGG | - | chr5_2:64284854-64284873 | None:intergenic | 20.0% |
| !!! | TTTCTGCATTCAATAAATTT+TGG | - | chr5_2:64284864-64284883 | None:intergenic | 20.0% |
| !! | AGTTAATAATAGAAAACCAA+TGG | - | chr5_2:64285374-64285393 | None:intergenic | 20.0% |
| !! | ATTTATTTATCTCAGTAGTA+TGG | + | chr5_2:64285484-64285503 | Msa0781700:intron | 20.0% |
| !!! | AAATAGTTTTAAATTGCAGT+AGG | - | chr5_2:64285626-64285645 | None:intergenic | 20.0% |
| !! | ACATAACAAAATATTACGAT+AGG | + | chr5_2:64285691-64285710 | Msa0781700:CDS | 20.0% |
| !!! | TTGTGGTTATTTTCTTAATA+TGG | + | chr5_2:64286612-64286631 | Msa0781700:CDS | 20.0% |
| !! | TAGTTTATTCATCAGAATTT+AGG | + | chr5_2:64287018-64287037 | Msa0781700:intron | 20.0% |
| !! | TTGAAAACTATTATTAGATC+AGG | - | chr5_2:64287122-64287141 | None:intergenic | 20.0% |
| !!! | GTCATTTTCTTAAAAATATG+TGG | - | chr5_2:64287335-64287354 | None:intergenic | 20.0% |
| ! | AAGCATTAAAAATCTAACCT+GGG | - | chr5_2:64283742-64283761 | None:intergenic | 25.0% |
| !! | AAAGCATTAAAAATCTAACC+TGG | - | chr5_2:64283743-64283762 | None:intergenic | 25.0% |
| !! | GTAATGGAATGAAATCTTAA+TGG | + | chr5_2:64283882-64283901 | Msa0781700:intron | 25.0% |
| ! | TTAGTGCTTCAATAAAATCA+TGG | + | chr5_2:64283977-64283996 | Msa0781700:intron | 25.0% |
| ! | TTTATTGTCAAGATAAGCTA+TGG | - | chr5_2:64284269-64284288 | None:intergenic | 25.0% |
| ! | ACAAAGATAAAAGTCCAAAT+GGG | - | chr5_2:64284309-64284328 | None:intergenic | 25.0% |
| !!! | CTTTTATCTTTGTCATTTGA+TGG | + | chr5_2:64284316-64284335 | Msa0781700:intron | 25.0% |
| ! | AATGAACACACTTCAATATA+GGG | - | chr5_2:64284361-64284380 | None:intergenic | 25.0% |
| ! | AAATGAACACACTTCAATAT+AGG | - | chr5_2:64284362-64284381 | None:intergenic | 25.0% |
| ! | TCAGTTAAAGATGAATTGTT+CGG | - | chr5_2:64284550-64284569 | None:intergenic | 25.0% |
| ! | ATCAAGAATTTCTTCCTAAA+TGG | + | chr5_2:64284662-64284681 | Msa0781700:intron | 25.0% |
| ! | TATTAACAAAGTAGCCATTT+AGG | - | chr5_2:64284679-64284698 | None:intergenic | 25.0% |
| ! | TTTATTGAATGCAGAAAATG+TGG | + | chr5_2:64284867-64284886 | Msa0781700:intron | 25.0% |
| !! | ATCAAGAATTCAAGTTTGTA+AGG | - | chr5_2:64284949-64284968 | None:intergenic | 25.0% |
| ! | ATTCCTAAAAAGATAAACTG+TGG | - | chr5_2:64285145-64285164 | None:intergenic | 25.0% |
| ! | ATTTCACATATTCTGTCAAA+TGG | + | chr5_2:64285271-64285290 | Msa0781700:CDS | 25.0% |
| ! | ATGAAGATTACACTGAAAAA+TGG | - | chr5_2:64285954-64285973 | None:intergenic | 25.0% |
| ! | GAACCTAAATAAGTAGTAAA+AGG | - | chr5_2:64286176-64286195 | None:intergenic | 25.0% |
| ! | AAAAACAACTGGAAAAAGAA+AGG | - | chr5_2:64286391-64286410 | None:intergenic | 25.0% |
| ! | TATACTTTCAATCGTGTTAA+AGG | - | chr5_2:64286414-64286433 | None:intergenic | 25.0% |
| ! | AAGCTGAATGTCAAAAATAA+TGG | - | chr5_2:64286536-64286555 | None:intergenic | 25.0% |
| ! | AATGAACAAAATGCTGTATA+TGG | - | chr5_2:64286867-64286886 | None:intergenic | 25.0% |
| ! | AAAATTATTTATGCATGCCA+AGG | - | chr5_2:64287098-64287117 | None:intergenic | 25.0% |
| !! | TCTAAAAAGTAGAGGTATAA+GGG | + | chr5_2:64287272-64287291 | Msa0781700:intron | 25.0% |
| !! | ATGCAAACTTCTTTCTTTTT+CGG | + | chr5_2:64287535-64287554 | Msa0781700:CDS | 25.0% |
| ! | ATTAAGCAGTGATAGAAATT+TGG | - | chr5_2:64287790-64287809 | None:intergenic | 25.0% |
| TTATACAGCAGAAACAACAT+AGG | - | chr5_2:64283630-64283649 | None:intergenic | 30.0% | |
| TCAGATCATCGTTATAAAGA+AGG | + | chr5_2:64283670-64283689 | Msa0781700:CDS | 30.0% | |
| TTCATTCCATTACAGAATTC+TGG | - | chr5_2:64283875-64283894 | None:intergenic | 30.0% | |
| ATGGAATGAAATCTTAATGG+TGG | + | chr5_2:64283885-64283904 | Msa0781700:intron | 30.0% | |
| CAAATTACGACAGGTAAATT+TGG | - | chr5_2:64284019-64284038 | None:intergenic | 30.0% | |
| CAAATTTACCTGTCGTAATT+TGG | + | chr5_2:64284017-64284036 | Msa0781700:intron | 30.0% | |
| !! | TTGACAATAAAGTATTGCTC+TGG | + | chr5_2:64284278-64284297 | Msa0781700:intron | 30.0% |
| GACAAAGATAAAAGTCCAAA+TGG | - | chr5_2:64284310-64284329 | None:intergenic | 30.0% | |
| ! | TATCTTTGTCATTTGATGGT+AGG | + | chr5_2:64284320-64284339 | Msa0781700:intron | 30.0% |
| CAGTTAAAGATGAATTGTTC+GGG | - | chr5_2:64284549-64284568 | None:intergenic | 30.0% | |
| ! | CTTGGTTGGTTAAATCTAAA+TGG | + | chr5_2:64284597-64284616 | Msa0781700:intron | 30.0% |
| GAAGAAAAGAAAGAAGATCT+TGG | + | chr5_2:64284889-64284908 | Msa0781700:CDS | 30.0% | |
| AAAAGATGTTGACACAAATG+AGG | + | chr5_2:64285119-64285138 | Msa0781700:CDS | 30.0% | |
| CAGATATTCCATTTGAGAAA+AGG | + | chr5_2:64285301-64285320 | Msa0781700:CDS | 30.0% | |
| TATTCCATTTGAGAAAAGGT+TGG | + | chr5_2:64285305-64285324 | Msa0781700:CDS | 30.0% | |
| AAGTTCCACAAACTAGTAAA+CGG | - | chr5_2:64285662-64285681 | None:intergenic | 30.0% | |
| ! | TTACCTTCTCAAAGTACTAA+TGG | + | chr5_2:64285860-64285879 | Msa0781700:intron | 30.0% |
| ! | ATACCATTAGTACTTTGAGA+AGG | - | chr5_2:64285866-64285885 | None:intergenic | 30.0% |
| ! | TGTTTTCTATCCATACAACA+GGG | + | chr5_2:64285995-64286014 | Msa0781700:CDS | 30.0% |
| TCCTTCTATTACATGATTGA+AGG | + | chr5_2:64286086-64286105 | Msa0781700:CDS | 30.0% | |
| CCTTCTATTACATGATTGAA+GGG | + | chr5_2:64286087-64286106 | Msa0781700:CDS | 30.0% | |
| ACATGATTGAAGGGAAAAAT+TGG | + | chr5_2:64286096-64286115 | Msa0781700:CDS | 30.0% | |
| CATGATTGAAGGGAAAAATT+GGG | + | chr5_2:64286097-64286116 | Msa0781700:CDS | 30.0% | |
| CTAAATAAGTAGTAAAAGGC+AGG | - | chr5_2:64286172-64286191 | None:intergenic | 30.0% | |
| ! | CTGCCTTTTACTACTTATTT+AGG | + | chr5_2:64286170-64286189 | Msa0781700:CDS | 30.0% |
| CTAAGTCATTGGATAAAGAT+CGG | + | chr5_2:64286252-64286271 | Msa0781700:intron | 30.0% | |
| GGATTACACTTATCAAGTAT+TGG | + | chr5_2:64286456-64286475 | Msa0781700:intron | 30.0% | |
| !! | TGCATTTCAGGTGAAAATTT+TGG | + | chr5_2:64286484-64286503 | Msa0781700:intron | 30.0% |
| !!! | GTGAAAATTTTGGTGTTAAC+TGG | + | chr5_2:64286494-64286513 | Msa0781700:CDS | 30.0% |
| ATAACCACAATTGTTCCAAA+GGG | - | chr5_2:64286602-64286621 | None:intergenic | 30.0% | |
| AATAACCACAATTGTTCCAA+AGG | - | chr5_2:64286603-64286622 | None:intergenic | 30.0% | |
| GTAGTAGAGTTCAATGAAAA+TGG | - | chr5_2:64286810-64286829 | None:intergenic | 30.0% | |
| TCATCTAATCTCTCAATTGT+TGG | + | chr5_2:64287230-64287249 | Msa0781700:intron | 30.0% | |
| CAATTGTTGGATGAATTTAG+TGG | + | chr5_2:64287243-64287262 | Msa0781700:intron | 30.0% | |
| !!! | CTTATACCTCTACTTTTTAG+AGG | - | chr5_2:64287273-64287292 | None:intergenic | 30.0% |
| ! | CTCTAAAAAGTAGAGGTATA+AGG | + | chr5_2:64287271-64287290 | Msa0781700:intron | 30.0% |
| ! | CTAAAAAGTAGAGGTATAAG+GGG | + | chr5_2:64287273-64287292 | Msa0781700:intron | 30.0% |
| TATGGTTTCTTTCTTATGCT+TGG | + | chr5_2:64287577-64287596 | Msa0781700:CDS | 30.0% | |
| GAAACAACATAGGATCACAA+TGG | - | chr5_2:64283620-64283639 | None:intergenic | 35.0% | |
| ! | TGTACCGTTTTATGCAAACA+AGG | + | chr5_2:64283699-64283718 | Msa0781700:CDS | 35.0% |
| TCTAACCTGGGATTATGAAA+GGG | - | chr5_2:64283730-64283749 | None:intergenic | 35.0% | |
| ATCTAACCTGGGATTATGAA+AGG | - | chr5_2:64283731-64283750 | None:intergenic | 35.0% | |
| !!! | AATTGGGTTGTGTCATTTTG+AGG | + | chr5_2:64283841-64283860 | Msa0781700:intron | 35.0% |
| ACCATTCCAGAATTCTGTAA+TGG | + | chr5_2:64283866-64283885 | Msa0781700:intron | 35.0% | |
| ! | TCCATTACAGAATTCTGGAA+TGG | - | chr5_2:64283870-64283889 | None:intergenic | 35.0% |
| !! | AATCTTAATGGTGGATGAAG+AGG | + | chr5_2:64283894-64283913 | Msa0781700:intron | 35.0% |
| ACACATAACCAAATTACGAC+AGG | - | chr5_2:64284028-64284047 | None:intergenic | 35.0% | |
| ! | ATCTTCACCCGAACAATTTT+TGG | - | chr5_2:64284511-64284530 | None:intergenic | 35.0% |
| AGCACTTGAGTTTAATCACT+TGG | + | chr5_2:64284579-64284598 | Msa0781700:intron | 35.0% | |
| CTTGAGTTTAATCACTTGGT+TGG | + | chr5_2:64284583-64284602 | Msa0781700:intron | 35.0% | |
| GTGGCAGAAAAAAAATGTCA+AGG | - | chr5_2:64284711-64284730 | None:intergenic | 35.0% | |
| AATATCTGTATGTCTCACTG+TGG | - | chr5_2:64284730-64284749 | None:intergenic | 35.0% | |
| TGAATACCATCAAACTAACC+TGG | - | chr5_2:64284773-64284792 | None:intergenic | 35.0% | |
| !!! | GATCTTGGTGAAGTTTTGAA+TGG | + | chr5_2:64284904-64284923 | Msa0781700:CDS | 35.0% |
| ! | CTTTTCTTGTCAGCATCTTT+TGG | - | chr5_2:64284996-64285015 | None:intergenic | 35.0% |
| AAAGATGCTGACAAGAAAAG+AGG | + | chr5_2:64284996-64285015 | Msa0781700:CDS | 35.0% | |
| !!! | ATTCAGACATGCTGTTTTGA+AGG | + | chr5_2:64285026-64285045 | Msa0781700:CDS | 35.0% |
| ! | ACTATGATGACTTGCCAATT+TGG | + | chr5_2:64285067-64285086 | Msa0781700:CDS | 35.0% |
| ! | CTATGATGACTTGCCAATTT+GGG | + | chr5_2:64285068-64285087 | Msa0781700:CDS | 35.0% |
| ! | TATGATGACTTGCCAATTTG+GGG | + | chr5_2:64285069-64285088 | Msa0781700:CDS | 35.0% |
| CATCAGTTTCAAATCTTCCA+AGG | - | chr5_2:64285098-64285117 | None:intergenic | 35.0% | |
| ! | AGGCCACAGTTTATCTTTTT+AGG | + | chr5_2:64285139-64285158 | Msa0781700:CDS | 35.0% |
| AGAAGATAGAGAGGTAAATG+TGG | + | chr5_2:64285248-64285267 | Msa0781700:CDS | 35.0% | |
| ! | TTCTCCAACCTTTTCTCAAA+TGG | - | chr5_2:64285312-64285331 | None:intergenic | 35.0% |
| ! | TTAGACCGTTTACTAGTTTG+TGG | + | chr5_2:64285654-64285673 | Msa0781700:CDS | 35.0% |
| GCGAACAAAGACTTAAATCT+TGG | - | chr5_2:64285795-64285814 | None:intergenic | 35.0% | |
| ! | CTCTTTTGTGACTATATGCT+TGG | + | chr5_2:64285925-64285944 | Msa0781700:intron | 35.0% |
| ATCTTTATGCTTGCTCTAGT+TGG | + | chr5_2:64285972-64285991 | Msa0781700:CDS | 35.0% | |
| ! | GTGTTTTCTATCCATACAAC+AGG | + | chr5_2:64285994-64286013 | Msa0781700:CDS | 35.0% |
| ! | GTTTTCTATCCATACAACAG+GGG | + | chr5_2:64285996-64286015 | Msa0781700:CDS | 35.0% |
| CCCTTCAATCATGTAATAGA+AGG | - | chr5_2:64286090-64286109 | None:intergenic | 35.0% | |
| ! | GTTTATGCTGTCTAAGATGA+TGG | - | chr5_2:64286129-64286148 | None:intergenic | 35.0% |
| ! | TTATTTAGGTTCCTTGAACC+TGG | + | chr5_2:64286184-64286203 | Msa0781700:CDS | 35.0% |
| ! | TCATTGATTGTTGTGAATCC+AGG | - | chr5_2:64286205-64286224 | None:intergenic | 35.0% |
| AATGATTTATGCAGTCACTG+TGG | + | chr5_2:64286220-64286239 | Msa0781700:CDS | 35.0% | |
| CAACTGGAAAAAGAAAGGAA+AGG | - | chr5_2:64286386-64286405 | None:intergenic | 35.0% | |
| CGTGTTAAAGGAAAAACAAC+TGG | - | chr5_2:64286402-64286421 | None:intergenic | 35.0% | |
| !!! | CACTTAGTTTTTTCGTTCTG+CGG | - | chr5_2:64286437-64286456 | None:intergenic | 35.0% |
| ! | GTATTGGTATGTTGCATTTC+AGG | + | chr5_2:64286472-64286491 | Msa0781700:intron | 35.0% |
| TTAACTGGTAGTCTATTCTC+TGG | + | chr5_2:64286509-64286528 | Msa0781700:CDS | 35.0% | |
| GACATTCAGCTTTCTTAACA+CGG | + | chr5_2:64286544-64286563 | Msa0781700:CDS | 35.0% | |
| ACTTGTAACCTCACCTTTAT+TGG | + | chr5_2:64286637-64286656 | Msa0781700:CDS | 35.0% | |
| AACCTCACCTTTATTGGTAT+TGG | + | chr5_2:64286643-64286662 | Msa0781700:CDS | 35.0% | |
| ACCTCACCTTTATTGGTATT+GGG | + | chr5_2:64286644-64286663 | Msa0781700:CDS | 35.0% | |
| TTACGGTACAAAGGTAGTTT+AGG | - | chr5_2:64286743-64286762 | None:intergenic | 35.0% | |
| ! | CCATTTGAGGAAGAGTTTTA+CGG | - | chr5_2:64286760-64286779 | None:intergenic | 35.0% |
| ! | TCAATGAAAATGGCACTGAA+TGG | - | chr5_2:64286800-64286819 | None:intergenic | 35.0% |
| !! | CTTTTGATTGTCACTGCTTT+TGG | + | chr5_2:64286899-64286918 | Msa0781700:CDS | 35.0% |
| GAGAGATTAGATGAATCAAG+AGG | - | chr5_2:64287224-64287243 | None:intergenic | 35.0% | |
| !!! | TACCTCTACTTTTTAGAGGT+CGG | - | chr5_2:64287269-64287288 | None:intergenic | 35.0% |
| GATATTAGGTCTTTCCTTTG+TGG | + | chr5_2:64287439-64287458 | Msa0781700:intron | 35.0% | |
| TCAACTGGGTTGTTCATATA+TGG | + | chr5_2:64287466-64287485 | Msa0781700:CDS | 35.0% | |
| !!! | TTCTTTCTTTTTCGGCTACA+TGG | + | chr5_2:64287543-64287562 | Msa0781700:CDS | 35.0% |
| TTTCTTATGCTTGGAACTGT+GGG | + | chr5_2:64287586-64287605 | Msa0781700:CDS | 35.0% | |
| !! | GCAATGAGATTTTGCTGTAT+TGG | - | chr5_2:64287723-64287742 | None:intergenic | 35.0% |
| CAGCAAAATCTCATTGCAAA+TGG | + | chr5_2:64287726-64287745 | Msa0781700:three_prime_UTR | 35.0% | |
| GGTTTACTGAAGAGTAGTAT+AGG | + | chr5_2:64287747-64287766 | Msa0781700:three_prime_UTR | 35.0% | |
| GGAAAAGTCAACGACATGTT+TGG | + | chr5_2:64283588-64283607 | Msa0781700:CDS | 40.0% | |
| ! | ACCGTTTTATGCAAACAAGG+TGG | + | chr5_2:64283702-64283721 | Msa0781700:CDS | 40.0% |
| ! | CCCACCTTGTTTGCATAAAA+CGG | - | chr5_2:64283706-64283725 | None:intergenic | 40.0% |
| ! | CCGTTTTATGCAAACAAGGT+GGG | + | chr5_2:64283703-64283722 | Msa0781700:CDS | 40.0% |
| AAGAGGAGATGAATGTGTCT+TGG | + | chr5_2:64283911-64283930 | Msa0781700:intron | 40.0% | |
| TGGCCAAACTCTAGATTATG+AGG | - | chr5_2:64284477-64284496 | None:intergenic | 40.0% | |
| TAGAGTTTGGCCAAGAGATA+CGG | + | chr5_2:64284484-64284503 | Msa0781700:intron | 40.0% | |
| !!! | AATTTTTGGCCCGTATCTCT+TGG | - | chr5_2:64284497-64284516 | None:intergenic | 40.0% |
| GATACGGGCCAAAAATTGTT+CGG | + | chr5_2:64284500-64284519 | Msa0781700:intron | 40.0% | |
| ATACGGGCCAAAAATTGTTC+GGG | + | chr5_2:64284501-64284520 | Msa0781700:intron | 40.0% | |
| AACTAACCTGGCGAACAAAA+GGG | - | chr5_2:64284761-64284780 | None:intergenic | 40.0% | |
| AAACTAACCTGGCGAACAAA+AGG | - | chr5_2:64284762-64284781 | None:intergenic | 40.0% | |
| ! | ATCTTTTGGCAAATGCTCTC+AGG | - | chr5_2:64284982-64285001 | None:intergenic | 40.0% |
| AAATGATCCGAATGCTGTTG+TGG | + | chr5_2:64285218-64285237 | Msa0781700:CDS | 40.0% | |
| ! | CCAATGGATTTCCAAGTGAT+GGG | - | chr5_2:64285358-64285377 | None:intergenic | 40.0% |
| ! | ACCAATGGATTTCCAAGTGA+TGG | - | chr5_2:64285359-64285378 | None:intergenic | 40.0% |
| GTTACTGTTCTTCTCTTGAC+CGG | + | chr5_2:64285399-64285418 | Msa0781700:CDS | 40.0% | |
| CAGTAGGAGCTGCAATATAA+AGG | - | chr5_2:64285610-64285629 | None:intergenic | 40.0% | |
| TAGGTTTACACCAGATGAAG+AGG | + | chr5_2:64285710-64285729 | Msa0781700:CDS | 40.0% | |
| ! | ACTGGATGGAAGTATATCCA+TGG | + | chr5_2:64285753-64285772 | Msa0781700:CDS | 40.0% |
| GATATCTGAACACATCACCA+TGG | - | chr5_2:64285773-64285792 | None:intergenic | 40.0% | |
| GTCATATACGCATTAACGTC+CGG | + | chr5_2:64286041-64286060 | Msa0781700:CDS | 40.0% | |
| !! | AGTAAAAGGCAGGTATTGAG+TGG | - | chr5_2:64286162-64286181 | None:intergenic | 40.0% |
| TTGTTGTGAATCCAGGTTCA+AGG | - | chr5_2:64286198-64286217 | None:intergenic | 40.0% | |
| GGTCAGTTGATCTAAGTCAT+TGG | + | chr5_2:64286241-64286260 | Msa0781700:intron | 40.0% | |
| CGCAGAACGAAAAAACTAAG+TGG | + | chr5_2:64286435-64286454 | Msa0781700:intron | 40.0% | |
| !! | ACTACCCTTTGGAACAATTG+TGG | + | chr5_2:64286595-64286614 | Msa0781700:CDS | 40.0% |
| ACCCAATACCAATAAAGGTG+AGG | - | chr5_2:64286648-64286667 | None:intergenic | 40.0% | |
| ! | TCACCTTTATTGGTATTGGG+TGG | + | chr5_2:64286647-64286666 | Msa0781700:CDS | 40.0% |
| ! | CACCTTTATTGGTATTGGGT+GGG | + | chr5_2:64286648-64286667 | Msa0781700:CDS | 40.0% |
| ATCCCACCCAATACCAATAA+AGG | - | chr5_2:64286653-64286672 | None:intergenic | 40.0% | |
| ! | AAGGTGCTTGAAACTCTGAT+TGG | - | chr5_2:64286691-64286710 | None:intergenic | 40.0% |
| TCGAACCAACAAGTATCCTA+GGG | + | chr5_2:64286712-64286731 | Msa0781700:CDS | 40.0% | |
| AATCTCCCTAGGATACTTGT+TGG | - | chr5_2:64286720-64286739 | None:intergenic | 40.0% | |
| ! | GGAAGAGTTTTACGGTACAA+AGG | - | chr5_2:64286752-64286771 | None:intergenic | 40.0% |
| CCGTAAAACTCTTCCTCAAA+TGG | + | chr5_2:64286757-64286776 | Msa0781700:CDS | 40.0% | |
| AACTCTTCCTCAAATGGCTA+TGG | + | chr5_2:64286763-64286782 | Msa0781700:CDS | 40.0% | |
| ACTACATATTTGCCAGTGTG+TGG | + | chr5_2:64286825-64286844 | Msa0781700:CDS | 40.0% | |
| CTACATATTTGCCAGTGTGT+GGG | + | chr5_2:64286826-64286845 | Msa0781700:CDS | 40.0% | |
| TACATATTTGCCAGTGTGTG+GGG | + | chr5_2:64286827-64286846 | Msa0781700:CDS | 40.0% | |
| !!! | TGTCACTGCTTTTGGTAATG+TGG | + | chr5_2:64286907-64286926 | Msa0781700:CDS | 40.0% |
| !! | ATACTTTCAACTTGCTGCTG+AGG | + | chr5_2:64286937-64286956 | Msa0781700:CDS | 40.0% |
| GGTGATTGTGTTTGAATGGA+AGG | - | chr5_2:64287077-64287096 | None:intergenic | 40.0% | |
| CCAAGGTGATTGTGTTTGAA+TGG | - | chr5_2:64287081-64287100 | None:intergenic | 40.0% | |
| CCATTCAAACACAATCACCT+TGG | + | chr5_2:64287078-64287097 | Msa0781700:intron | 40.0% | |
| ! | CACGTGATGCTACAAACTTT+TGG | + | chr5_2:64287147-64287166 | Msa0781700:intron | 40.0% |
| ! | AAACTTTTGGCCATGCTAGA+CGG | + | chr5_2:64287160-64287179 | Msa0781700:intron | 40.0% |
| ATTAGGTCTTTCCTTTGTGG+TGG | + | chr5_2:64287442-64287461 | Msa0781700:intron | 40.0% | |
| CAGACATATCTGATCTTGCA+TGG | - | chr5_2:64287510-64287529 | None:intergenic | 40.0% | |
| CATGCAAGATCAGATATGTC+TGG | + | chr5_2:64287508-64287527 | Msa0781700:CDS | 40.0% | |
| ! | TACATGGCTTGCATTTGCTA+TGG | + | chr5_2:64287559-64287578 | Msa0781700:CDS | 40.0% |
| CTTTCTTATGCTTGGAACTG+TGG | + | chr5_2:64287585-64287604 | Msa0781700:CDS | 40.0% | |
| TCTGAGCTATTCACACTTGA+GGG | - | chr5_2:64287653-64287672 | None:intergenic | 40.0% | |
| TTCTGAGCTATTCACACTTG+AGG | - | chr5_2:64287654-64287673 | None:intergenic | 40.0% | |
| AGCATCACATTCATAGCTTC+AGG | + | chr5_2:64287887-64287906 | Msa0781700:three_prime_UTR | 40.0% | |
| !! | TGTAGCACTGACACTTCTGA+TGG | + | chr5_2:64284117-64284136 | Msa0781700:intron | 45.0% |
| ! | TATCAGTGTTGTGCTGGTGT+CGG | - | chr5_2:64284163-64284182 | None:intergenic | 45.0% |
| CACATGTATCAGTGTTGTGC+TGG | - | chr5_2:64284169-64284188 | None:intergenic | 45.0% | |
| CTCACACAAAAAGTGACACG+TGG | - | chr5_2:64284236-64284255 | None:intergenic | 45.0% | |
| TTGCTCTGGTGTATCCCATT+TGG | + | chr5_2:64284292-64284311 | Msa0781700:intron | 45.0% | |
| ! | GGGCCTCATAATCTAGAGTT+TGG | + | chr5_2:64284471-64284490 | Msa0781700:intron | 45.0% |
| AGAGTTTGGCCAAGAGATAC+GGG | + | chr5_2:64284485-64284504 | Msa0781700:intron | 45.0% | |
| !! | TGTTCGCCAGGTTAGTTTGA+TGG | + | chr5_2:64284764-64284783 | Msa0781700:intron | 45.0% |
| ! | TTGCCAATTTGGGGTTTCCT+TGG | + | chr5_2:64285078-64285097 | Msa0781700:CDS | 45.0% |
| CTTCCAAGGAAACCCCAAAT+TGG | - | chr5_2:64285084-64285103 | None:intergenic | 45.0% | |
| GTCAAGTCCACAACAGCATT+CGG | - | chr5_2:64285228-64285247 | None:intergenic | 45.0% | |
| GGACTTGACAGAAGATAGAG+AGG | + | chr5_2:64285239-64285258 | Msa0781700:CDS | 45.0% | |
| CCCATCACTTGGAAATCCAT+TGG | + | chr5_2:64285355-64285374 | Msa0781700:CDS | 45.0% | |
| GAGAATCATGGCAAGGAATC+CGG | - | chr5_2:64285421-64285440 | None:intergenic | 45.0% | |
| AAGTACGCGCATGAGAATCA+TGG | - | chr5_2:64285433-64285452 | None:intergenic | 45.0% | |
| ! | GAGCACATTTGCTCGCATTT+TGG | - | chr5_2:64285561-64285580 | None:intergenic | 45.0% |
| TCATCAAGTGCCTCTTCATC+TGG | - | chr5_2:64285723-64285742 | None:intergenic | 45.0% | |
| ! | CTTGATGACCAAGAAGAGAC+TGG | + | chr5_2:64285735-64285754 | Msa0781700:CDS | 45.0% |
| ATGACCAAGAAGAGACTGGA+TGG | + | chr5_2:64285739-64285758 | Msa0781700:CDS | 45.0% | |
| ACTTCCATCCAGTCTCTTCT+TGG | - | chr5_2:64285746-64285765 | None:intergenic | 45.0% | |
| AACAAAGCTCCCCTGTTGTA+TGG | - | chr5_2:64286008-64286027 | None:intergenic | 45.0% | |
| GAAGGAAGCTGCAGAATAAC+CGG | - | chr5_2:64286072-64286091 | None:intergenic | 45.0% | |
| TAGTGCTGCAGTGGAGTTAT+AGG | - | chr5_2:64286579-64286598 | None:intergenic | 45.0% | |
| !! | GGATACTTGTTGGTTCGACA+AGG | - | chr5_2:64286710-64286729 | None:intergenic | 45.0% |
| GTCGAACCAACAAGTATCCT+AGG | + | chr5_2:64286711-64286730 | Msa0781700:CDS | 45.0% | |
| GGTAGTTTAGGAATCTCCCT+AGG | - | chr5_2:64286731-64286750 | None:intergenic | 45.0% | |
| AATCCAGCCATAGCCATTTG+AGG | - | chr5_2:64286773-64286792 | None:intergenic | 45.0% | |
| TTGCTGCTGAGGATCATGAA+TGG | + | chr5_2:64286948-64286967 | Msa0781700:CDS | 45.0% | |
| !! | TTCCTTTGTGGTGGATCAAC+TGG | + | chr5_2:64287451-64287470 | Msa0781700:CDS | 45.0% |
| !! | TCCTTTGTGGTGGATCAACT+GGG | + | chr5_2:64287452-64287471 | Msa0781700:CDS | 45.0% |
| GCTATTCACACTTGAGGGAA+CGG | - | chr5_2:64287648-64287667 | None:intergenic | 45.0% | |
| ATAGCTCAGAAGAAGCTCAC+TGG | + | chr5_2:64287663-64287682 | Msa0781700:exon | 45.0% | |
| GAAGCTCACTGGAATAAACC+AGG | + | chr5_2:64287674-64287693 | Msa0781700:three_prime_UTR | 45.0% | |
| ! | ACAGAGTAAAACAAAGCGCC+TGG | - | chr5_2:64287695-64287714 | None:intergenic | 45.0% |
| TGGGACCCTTTCATAATCCC+AGG | + | chr5_2:64283722-64283741 | Msa0781700:CDS | 50.0% | |
| CCATTCCTCCGGAAATTGGA+GGG | - | chr5_2:64284453-64284472 | None:intergenic | 50.0% | |
| CCTCCAATTTCCGGAGGAAT+GGG | + | chr5_2:64284451-64284470 | Msa0781700:intron | 50.0% | |
| GATTATGAGGCCCATTCCTC+CGG | - | chr5_2:64284464-64284483 | None:intergenic | 50.0% | |
| TCGGGTGAAGATTTGACCTC+AGG | + | chr5_2:64284519-64284538 | Msa0781700:intron | 50.0% | |
| GAATTGTTCGGGAGAACCTG+AGG | - | chr5_2:64284538-64284557 | None:intergenic | 50.0% | |
| ! | GATCTTCCCTTTTGTTCGCC+AGG | + | chr5_2:64284752-64284771 | Msa0781700:CDS | 50.0% |
| ATCCTCACTCTCCCATCACT+TGG | + | chr5_2:64285344-64285363 | Msa0781700:CDS | 50.0% | |
| ! | TTCCAAGTGATGGGAGAGTG+AGG | - | chr5_2:64285349-64285368 | None:intergenic | 50.0% |
| TCTTTGTTCGCAGCAGCACT+TGG | + | chr5_2:64285804-64285823 | Msa0781700:CDS | 50.0% | |
| !! | GGGAGCTTTGTTTACTGCAC+TGG | + | chr5_2:64286016-64286035 | Msa0781700:CDS | 50.0% |
| TGCAGAATAACCGGCAATGC+CGG | - | chr5_2:64286063-64286082 | None:intergenic | 50.0% | |
| ! | TTGGTATTGGGTGGGATTGC+TGG | + | chr5_2:64286656-64286675 | Msa0781700:CDS | 50.0% |
| CTTCCTCAAATGGCTATGGC+TGG | + | chr5_2:64286767-64286786 | Msa0781700:CDS | 50.0% | |
| AATCTGATGACCCCACACAC+TGG | - | chr5_2:64286840-64286859 | None:intergenic | 50.0% | |
| CTGCTGAGGATCATGAATGG+TGG | + | chr5_2:64286951-64286970 | Msa0781700:CDS | 50.0% | |
| CTGAGGATCATGAATGGTGG+TGG | + | chr5_2:64286954-64286973 | Msa0781700:CDS | 50.0% | |
| !! | AGGATCATGAATGGTGGTGG+AGG | + | chr5_2:64286957-64286976 | Msa0781700:CDS | 50.0% |
| GAATCAAGAGGACCGACCTT+TGG | - | chr5_2:64287212-64287231 | None:intergenic | 50.0% | |
| ! | GGCCGACCTCTAAAAAGTAG+AGG | + | chr5_2:64287264-64287283 | Msa0781700:intron | 50.0% |
| ATAAGTTCGCGCTCGACTCA+AGG | + | chr5_2:64287298-64287317 | Msa0781700:intron | 50.0% | |
| ACCCAGTTGATCCACCACAA+AGG | - | chr5_2:64287456-64287475 | None:intergenic | 50.0% | |
| ! | GTTGTGCTGGTGTCGGACAT+CGG | - | chr5_2:64284156-64284175 | None:intergenic | 55.0% |
| GGCCTGAACCCTCCAATTTC+CGG | + | chr5_2:64284442-64284461 | Msa0781700:intron | 55.0% | |
| CTCCGGAAATTGGAGGGTTC+AGG | - | chr5_2:64284447-64284466 | None:intergenic | 55.0% | |
| CTGAACCCTCCAATTTCCGG+AGG | + | chr5_2:64284445-64284464 | Msa0781700:intron | 55.0% | |
| CCCTCCAATTTCCGGAGGAA+TGG | + | chr5_2:64284450-64284469 | Msa0781700:intron | 55.0% | |
| CCCATTCCTCCGGAAATTGG+AGG | - | chr5_2:64284454-64284473 | None:intergenic | 55.0% | |
| AGGCCCATTCCTCCGGAAAT+TGG | - | chr5_2:64284457-64284476 | None:intergenic | 55.0% | |
| CGCGCATGAGAATCATGGCA+AGG | - | chr5_2:64285428-64285447 | None:intergenic | 55.0% | |
| GCGAGCAAATGTGCTCGATG+CGG | + | chr5_2:64285565-64285584 | Msa0781700:intron | 55.0% | |
| TTCGCAGCAGCACTTGGAAC+AGG | + | chr5_2:64285810-64285829 | Msa0781700:CDS | 55.0% | |
| GCATTAACGTCCGGCATTGC+CGG | + | chr5_2:64286050-64286069 | Msa0781700:CDS | 55.0% | |
| !! | GGCAGGTATTGAGTGGAGCA+CGG | - | chr5_2:64286155-64286174 | None:intergenic | 55.0% |
| TCCACTGCAGCACTACCCTT+TGG | + | chr5_2:64286584-64286603 | Msa0781700:CDS | 55.0% | |
| TCCAAAGGGTAGTGCTGCAG+TGG | - | chr5_2:64286588-64286607 | None:intergenic | 55.0% | |
| GGATCGAGATCCGTCTAGCA+TGG | - | chr5_2:64287173-64287192 | None:intergenic | 55.0% | |
| TTTGGCTGCAGATGCGGAAG+AGG | - | chr5_2:64287194-64287213 | None:intergenic | 55.0% | |
| TCTTCCGCATCTGCAGCCAA+AGG | + | chr5_2:64287193-64287212 | Msa0781700:intron | 55.0% | |
| ! | CTGGTGTCGGACATCGGACT+CGG | - | chr5_2:64284150-64284169 | None:intergenic | 60.0% |
| CCGACCTTTGGCTGCAGATG+CGG | - | chr5_2:64287200-64287219 | None:intergenic | 60.0% | |
| CCGCATCTGCAGCCAAAGGT+CGG | + | chr5_2:64287197-64287216 | Msa0781700:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 64283575 | 64287963 | 64283575 | ID=Msa0781700;Name=Msa0781700 |
| chr5_2 | mRNA | 64283575 | 64287963 | 64283575 | ID=Msa0781700-mRNA-1;Parent=Msa0781700;Name=Msa0781700-mRNA-1;_AED=0.07;_eAED=0.07;_QI=11|0.66|0.71|1|1|1|7|297|675 |
| chr5_2 | exon | 64283575 | 64283743 | 64283575 | ID=Msa0781700-mRNA-1:exon:19176;Parent=Msa0781700-mRNA-1 |
| chr5_2 | exon | 64284733 | 64284773 | 64284733 | ID=Msa0781700-mRNA-1:exon:19177;Parent=Msa0781700-mRNA-1 |
| chr5_2 | exon | 64284881 | 64285469 | 64284881 | ID=Msa0781700-mRNA-1:exon:19178;Parent=Msa0781700-mRNA-1 |
| chr5_2 | exon | 64285596 | 64285850 | 64285596 | ID=Msa0781700-mRNA-1:exon:19179;Parent=Msa0781700-mRNA-1 |
| chr5_2 | exon | 64285962 | 64286241 | 64285962 | ID=Msa0781700-mRNA-1:exon:19180;Parent=Msa0781700-mRNA-1 |
| chr5_2 | exon | 64286494 | 64286978 | 64286494 | ID=Msa0781700-mRNA-1:exon:19181;Parent=Msa0781700-mRNA-1 |
| chr5_2 | exon | 64287447 | 64287963 | 64287447 | ID=Msa0781700-mRNA-1:exon:19182;Parent=Msa0781700-mRNA-1 |
| chr5_2 | five_prime_UTR | 64283575 | 64283585 | 64283575 | ID=Msa0781700-mRNA-1:five_prime_utr;Parent=Msa0781700-mRNA-1 |
| chr5_2 | CDS | 64283586 | 64283743 | 64283586 | ID=Msa0781700-mRNA-1:cds;Parent=Msa0781700-mRNA-1 |
| chr5_2 | CDS | 64284733 | 64284773 | 64284733 | ID=Msa0781700-mRNA-1:cds;Parent=Msa0781700-mRNA-1 |
| chr5_2 | CDS | 64284881 | 64285469 | 64284881 | ID=Msa0781700-mRNA-1:cds;Parent=Msa0781700-mRNA-1 |
| chr5_2 | CDS | 64285596 | 64285850 | 64285596 | ID=Msa0781700-mRNA-1:cds;Parent=Msa0781700-mRNA-1 |
| chr5_2 | CDS | 64285962 | 64286241 | 64285962 | ID=Msa0781700-mRNA-1:cds;Parent=Msa0781700-mRNA-1 |
| chr5_2 | CDS | 64286494 | 64286978 | 64286494 | ID=Msa0781700-mRNA-1:cds;Parent=Msa0781700-mRNA-1 |
| chr5_2 | CDS | 64287447 | 64287666 | 64287447 | ID=Msa0781700-mRNA-1:cds;Parent=Msa0781700-mRNA-1 |
| chr5_2 | three_prime_UTR | 64287667 | 64287963 | 64287667 | ID=Msa0781700-mRNA-1:three_prime_utr;Parent=Msa0781700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
