AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0690100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690100 MtrunA17_Chr4g0035951 99.000 400 4 0 1 400 1 400 0.0 812
Msa0690100 MtrunA17_Chr4g0028361 98.750 400 5 0 1 400 1 400 0.0 811
Msa0690100 MtrunA17_Chr1g0208981 82.535 355 61 1 46 400 38 391 0.0 612
Msa0690100 MtrunA17_Chr4g0035981 95.359 237 11 0 164 400 4 240 3.29e-168 470
Msa0690100 MtrunA17_Chr5g0429051 56.818 352 147 4 53 400 8 358 2.23e-135 391
Msa0690100 MtrunA17_Chr7g0265821 56.534 352 148 4 53 400 8 358 3.76e-135 391
Msa0690100 MtrunA17_Chr5g0447091 56.374 353 150 3 51 400 6 357 2.42e-133 386
Msa0690100 MtrunA17_Chr1g0179211 54.830 352 154 4 53 400 8 358 6.04e-129 375
Msa0690100 MtrunA17_Chr4g0035971 90.000 140 12 2 1 140 1 138 2.51e-81 245
Msa0690100 MtrunA17_Chr5g0429031 57.619 210 88 1 45 253 41 250 3.24e-78 242
Msa0690100 MtrunA17_Chr5g0429021 53.030 132 58 3 272 400 1 131 3.98e-37 131
Msa0690100 MtrunA17_Chr7g0265811 46.809 94 26 1 157 250 21 90 3.15e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690100 AT2G21330.1 83.333 402 62 4 1 400 1 399 0.0 688
Msa0690100 AT4G38970.1 83.709 399 61 3 4 400 2 398 0.0 681
Msa0690100 AT2G21330.3 80.846 402 62 5 1 400 1 389 0.0 659
Msa0690100 AT2G01140.1 75.063 397 92 2 4 400 2 391 0.0 611
Msa0690100 AT2G21330.2 82.903 310 48 4 1 308 1 307 0.0 523
Msa0690100 AT4G38970.2 79.630 324 55 4 4 318 2 323 0.0 518
Msa0690100 AT4G26530.1 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0690100 AT4G26530.3 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0690100 AT4G26530.2 56.780 354 148 4 51 400 6 358 2.08e-136 394
Msa0690100 AT2G36460.1 56.818 352 147 4 53 400 8 358 6.59e-135 390
Msa0690100 AT3G52930.1 55.682 352 151 4 53 400 8 358 4.88e-132 383
Msa0690100 AT5G03690.2 55.398 352 153 3 53 400 8 359 2.44e-129 376
Msa0690100 AT5G03690.1 51.000 400 182 5 7 400 2 393 1.04e-128 376
Msa0690100 AT4G26520.1 55.398 352 152 4 53 400 8 358 7.42e-127 370
Msa0690100 AT4G26520.3 55.556 351 151 4 53 399 8 357 1.47e-126 369
Msa0690100 AT4G26520.2 55.271 351 152 4 54 400 6 355 3.12e-126 368
Msa0690100 AT4G26520.4 55.271 351 152 4 54 400 6 355 3.12e-126 368
Msa0690100 AT2G36460.3 56.343 268 112 4 137 400 1 267 9.25e-99 295
Msa0690100 AT2G36460.2 56.343 268 112 4 137 400 1 267 9.25e-99 295
Msa0690100 AT5G03690.3 54.307 267 118 3 138 400 1 267 1.96e-91 276
Msa0690100 AT5G03690.4 54.307 267 118 3 138 400 1 267 1.96e-91 276

Find 155 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCCGGGCGTGGTATTT+TGG 0.165856 4_4:+57533163 Msa0690100:CDS
ACACCCAAATGTTTAAAATT+TGG 0.199558 4_4:+57535184 Msa0690100:three_prime_UTR
ATGTCTTCAATGCGGTATTT+TGG 0.245388 4_4:-57534757 None:intergenic
TGGTCCCTTAACTATTTATT+TGG 0.264548 4_4:-57531882 None:intergenic
AATAGGCTTAAATGCACTTT+TGG 0.265793 4_4:-57531902 None:intergenic
TCTAACCTAAGGAAAATAAT+AGG 0.276928 4_4:-57531919 None:intergenic
TTTGACGAACAATTCCTTCT+TGG 0.278555 4_4:-57534894 None:intergenic
GTCCATGAAACCCAATTAAA+AGG 0.289230 4_4:+57535209 Msa0690100:three_prime_UTR
GGCTGTCAAGGAAGCAGCCT+GGG 0.313883 4_4:+57533986 Msa0690100:CDS
GGGAAGCGTTTGGCTTCAAT+TGG 0.326689 4_4:+57533212 Msa0690100:CDS
GATGATAATTCATGCTTGTT+TGG 0.327277 4_4:-57531991 None:intergenic
TTGAAGTAGCACAAAAGGTT+TGG 0.329064 4_4:+57534348 Msa0690100:CDS
TTGTCCTTGCACTCAGCTCC+TGG 0.340552 4_4:-57534446 None:intergenic
CGTGCCATGGGTTTGGAGAT+TGG 0.341879 4_4:-57534709 None:intergenic
ACCATGATACCAGGGACAGC+TGG 0.345678 4_4:-57534527 None:intergenic
CAAGGAAGCAGCCTGGGGTT+TGG 0.347325 4_4:+57533992 Msa0690100:CDS
CTCTACCAATCTACAGTTGA+TGG 0.350484 4_4:+57533338 Msa0690100:CDS
AAGATCTCTGGTTCCACAAT+TGG 0.357070 4_4:-57534293 None:intergenic
ATCGAGCAAAACATTGTTCC+TGG 0.364320 4_4:+57533383 Msa0690100:CDS
GCCAGAGCAGAGGGACCGTT+TGG 0.371025 4_4:-57533966 None:intergenic
TGAGGAGAATGCCCTCAAAT+TGG 0.371449 4_4:-57534406 None:intergenic
TGAATCATGGTGCCAAGGTC+TGG 0.375096 4_4:+57533757 Msa0690100:CDS
TGAAGTAGCACAAAAGGTTT+GGG 0.375792 4_4:+57534349 Msa0690100:CDS
CATTACGTGGTTGAAATCAT+TGG 0.376955 4_4:-57531948 None:intergenic
AACGACACGTGCCATGGGTT+TGG 0.390092 4_4:-57534716 None:intergenic
CCCAAACGGTCCCTCTGCTC+TGG 0.391022 4_4:+57533965 Msa0690100:CDS
CCCAGCTGTCCCTGGTATCA+TGG 0.393404 4_4:+57534526 Msa0690100:CDS
TCACTTGGAGAGTATATATC+TGG 0.397336 4_4:+57533293 Msa0690100:CDS
TGGGTTTGGAGATTGGTTCA+TGG 0.399088 4_4:-57534702 None:intergenic
TGGCTGTCAAGGAAGCAGCC+TGG 0.407019 4_4:+57533985 Msa0690100:CDS
ATCTGGTGCCATTCTCTTTG+AGG 0.407821 4_4:+57533310 Msa0690100:CDS
CAATTCCTTCTTGGCTTCCT+CGG 0.408353 4_4:-57534885 None:intergenic
CCATGCTTGGCGGTTAGCTT+CGG 0.415377 4_4:-57533246 None:intergenic
TGCTACATGTGGGAAGCGTT+TGG 0.419407 4_4:+57533202 Msa0690100:CDS
CGATACCAAATAAATAGTTA+AGG 0.425020 4_4:+57531877 None:intergenic
CTTGTGACAGTTCCATCACT+TGG 0.443187 4_4:+57533278 Msa0690100:CDS
TCCTTCCATCAACTGTAGAT+TGG 0.444723 4_4:-57533343 None:intergenic
TAGGGTCTGGTGCCCCTAGC+TGG 0.446675 4_4:+57533725 Msa0690100:intron
GGCGTATGAACCAGCTCTAA+TGG 0.449196 4_4:-57532314 None:intergenic
AGCACAAAAGGTTTGGGCTG+AGG 0.454604 4_4:+57534355 Msa0690100:CDS
GTCAAGTGATGTCTCATTTG+CGG 0.454726 4_4:-57532049 None:intergenic
AAGGTGCTCGTTTCGCCAAA+TGG 0.465409 4_4:+57533816 Msa0690100:CDS
TTGAGCAATTGAGTTGGACT+TGG 0.467054 4_4:-57534834 None:intergenic
GATACCAAATAAATAGTTAA+GGG 0.467384 4_4:+57531878 None:intergenic
TTGTTCTTGACAAGTCTGAA+TGG 0.468236 4_4:+57532212 Msa0690100:CDS
GAACCAGAGATCTTGCTTGA+TGG 0.472497 4_4:+57534302 Msa0690100:CDS
GTTCATGGCATTCAAGTTGA+GGG 0.472908 4_4:-57534687 None:intergenic
TGAGAACAATGTCCAATTTG+AGG 0.474283 4_4:+57534394 Msa0690100:CDS
TCCAACTCAATTGCTCAACT+TGG 0.475986 4_4:+57534839 Msa0690100:CDS
AGATCTCTGGTTCCACAATT+GGG 0.476937 4_4:-57534292 None:intergenic
TGGCGAAACGAGCACCTTGT+TGG 0.482452 4_4:-57533811 None:intergenic
CATGGCCAAAATACCACGCC+CGG 0.484879 4_4:-57533168 None:intergenic
CCAGAGCAGAGGGACCGTTT+GGG 0.485801 4_4:-57533965 None:intergenic
ACCTTGTCAACTTTGATACC+AGG 0.493112 4_4:-57533401 None:intergenic
TCGCTATGCTGCAATTAGTC+AGG 0.494622 4_4:+57534016 Msa0690100:CDS
TGCAACCCTACTGCTCCATC+AGG 0.494718 4_4:+57532286 Msa0690100:CDS
TCCACATGTCAAGTGAAGAT+AGG 0.497175 4_4:+57532012 Msa0690100:five_prime_UTR
CAAGAAGGGTACGCCATGCT+TGG 0.498533 4_4:-57533259 None:intergenic
GGAAGCGTTTGGCTTCAATT+GGG 0.502252 4_4:+57533213 Msa0690100:CDS
CAATGATTTCAACCACGTAA+TGG 0.508557 4_4:+57531949 Msa0690100:five_prime_UTR
CAGAAAACAATTGCTTCACC+CGG 0.510404 4_4:+57533149 Msa0690100:intron
ATTCATCGTTGGAACCAGCT+AGG 0.510943 4_4:-57533739 None:intergenic
TCCCTCTGCTCTGGCTGTCA+AGG 0.511447 4_4:+57533974 Msa0690100:CDS
TGTTCTTGACAAGTCTGAAT+GGG 0.513891 4_4:+57532213 Msa0690100:CDS
GAGAACAATGTCCAATTTGA+GGG 0.514083 4_4:+57534395 Msa0690100:CDS
TTCATCGTTGGAACCAGCTA+GGG 0.515096 4_4:-57533738 None:intergenic
GCTCTAATGGTAAGACCTGA+TGG 0.519825 4_4:-57532301 None:intergenic
TTCTCCTGTGAAGGAGCTTG+AGG 0.524713 4_4:-57534499 None:intergenic
AGGCAAGACCGTCCAGACCT+TGG 0.525040 4_4:-57533769 None:intergenic
GGTTCATGGCATTCAAGTTG+AGG 0.530771 4_4:-57534688 None:intergenic
CAACGGATTGGTCCCAATTG+TGG 0.534112 4_4:+57534280 Msa0690100:CDS
GTATAGTCAGCAACTGTGGC+AGG 0.534125 4_4:-57534476 None:intergenic
TATGAGAACGACACGTGCCA+TGG 0.534333 4_4:-57534722 None:intergenic
ATACCCTCAAGCTCCTTCAC+AGG 0.534468 4_4:+57534495 Msa0690100:CDS
TCAGGTCTTACCATTAGAGC+TGG 0.535329 4_4:+57532304 Msa0690100:CDS
GTGAGTGAGTGTAAGAACTA+TGG 0.536227 4_4:+57532156 Msa0690100:exon
GTAAGACCTGATGGAGCAGT+AGG 0.536429 4_4:-57532292 None:intergenic
GCAGTTAATGATGGTGTTGA+CGG 0.536739 4_4:+57534983 Msa0690100:three_prime_UTR
AGCATAGCGAGCCAAACCCC+AGG 0.539660 4_4:-57534003 None:intergenic
TCTCCATCAAGCAAGATCTC+TGG 0.540606 4_4:-57534305 None:intergenic
TCTCCTGTGAAGGAGCTTGA+GGG 0.542263 4_4:-57534498 None:intergenic
CCATGATACCAGGGACAGCT+GGG 0.545501 4_4:-57534526 None:intergenic
AAAATACCGCATTGAAGACA+TGG 0.548809 4_4:+57534759 Msa0690100:CDS
GAGAGTTTCCTCAAAGAGAA+TGG 0.549338 4_4:-57533318 None:intergenic
AAGCCTAGCATGGTTACTCC+AGG 0.551395 4_4:+57534428 Msa0690100:CDS
AGAAGAAGGTTGACGTAGGA+GGG 0.553419 4_4:-57532248 None:intergenic
GCTCCTGGAGTAACCATGCT+AGG 0.553694 4_4:-57534431 None:intergenic
GAAGGGTACGCCATGCTTGG+CGG 0.555457 4_4:-57533256 None:intergenic
GTCAGCAACTGTGGCAGGAG+AGG 0.555780 4_4:-57534471 None:intergenic
TCCTTGACAGCCAGAGCAGA+GGG 0.557055 4_4:-57533975 None:intergenic
CGCGGTCTTGACGAGCTCAT+CGG 0.558858 4_4:-57532335 None:intergenic
TCCAAGTTGAGCAATTGAGT+TGG 0.559400 4_4:-57534840 None:intergenic
CTGGTTCCAACGATGAATCA+TGG 0.559760 4_4:+57533744 Msa0690100:CDS
TAGAAGAAGGTTGACGTAGG+AGG 0.563073 4_4:-57532249 None:intergenic
ACGCTTCCCACATGTAGCAT+TGG 0.563790 4_4:-57533198 None:intergenic
TGAATCCGAGGAAGCCAAGA+AGG 0.564271 4_4:+57534880 Msa0690100:CDS
ACCTATCTTCACTTGACATG+TGG 0.564740 4_4:-57532013 None:intergenic
ACAATTGCTTCACCCGGGCG+TGG 0.565967 4_4:+57533155 Msa0690100:CDS
ATCTTGCTTGATGGAGAACA+TGG 0.567139 4_4:+57534311 Msa0690100:CDS
TACTCCAGGAGCTGAGTGCA+AGG 0.568532 4_4:+57534442 Msa0690100:CDS
GATATATACTCTCCAAGTGA+TGG 0.570054 4_4:-57533290 None:intergenic
GTGATGGAACTGTCACAAGA+AGG 0.571260 4_4:-57533274 None:intergenic
AAGAAGGAATTGTTCGTCAA+AGG 0.571329 4_4:+57534896 Msa0690100:CDS
CTTACAACAGACATAGAAGA+AGG 0.572337 4_4:-57532262 None:intergenic
GGTTTATTAGGACAACGGAT+TGG 0.572758 4_4:+57534268 Msa0690100:intron
TGTAGCATTGGACTCATCCA+TGG 0.576571 4_4:-57533186 None:intergenic
AGGAGCTGAGTGCAAGGACA+AGG 0.577780 4_4:+57534448 Msa0690100:CDS
TTTGTCTGGTGGACAATCTG+AGG 0.579742 4_4:+57534655 Msa0690100:CDS
GTGTCACATACCATGATACC+AGG 0.579988 4_4:-57534536 None:intergenic
TGACAAGTCTGAATGGGTGA+AGG 0.580261 4_4:+57532219 Msa0690100:CDS
CCGAAGCTAACCGCCAAGCA+TGG 0.583140 4_4:+57533246 Msa0690100:CDS
TTGGCACCATGATTCATCGT+TGG 0.586333 4_4:-57533750 None:intergenic
CACTGGTGAGGGTGAATCCG+AGG 0.587935 4_4:+57534868 Msa0690100:CDS
AACGATGAATCATGGTGCCA+AGG 0.589365 4_4:+57533752 Msa0690100:CDS
CATTCTCCTCAAGCCTAGCA+TGG 0.591042 4_4:+57534418 Msa0690100:CDS
GACAAGTCTGAATGGGTGAA+GGG 0.591129 4_4:+57532220 Msa0690100:CDS
GCAGCACTAGCAGTTAATGA+TGG 0.594980 4_4:+57534974 Msa0690100:three_prime_UTR
ATGAGAACGACACGTGCCAT+GGG 0.596886 4_4:-57534721 None:intergenic
GCTGTCAAGGAAGCAGCCTG+GGG 0.597669 4_4:+57533987 Msa0690100:CDS
TCCTGGTATCAAAGTTGACA+AGG 0.599517 4_4:+57533400 Msa0690100:CDS
ATTGGACATTGTTCTCAGCA+AGG 0.604841 4_4:-57534388 None:intergenic
ACCAATCTACAGTTGATGGA+AGG 0.606822 4_4:+57533342 Msa0690100:CDS
TCATGGTGCCAAGGTCTGGA+CGG 0.610100 4_4:+57533761 Msa0690100:CDS
TGATGGAACTGTCACAAGAA+GGG 0.610460 4_4:-57533273 None:intergenic
TTAATGGTTTATTAGGACAA+CGG 0.610985 4_4:+57534263 Msa0690100:intron
GAGTAACCATGCTAGGCTTG+AGG 0.616311 4_4:-57534424 None:intergenic
CTTGGAAAGTACACTGGTGA+GGG 0.616339 4_4:+57534857 Msa0690100:CDS
CAATTGAGTTGGACTTGGCG+CGG 0.616785 4_4:-57534829 None:intergenic
TTCCTTGACAGCCAGAGCAG+AGG 0.621508 4_4:-57533976 None:intergenic
ACAGTTGTGAGCATCCCAAA+CGG 0.623689 4_4:+57533951 Msa0690100:CDS
AAATACCGCATTGAAGACAT+GGG 0.626712 4_4:+57534760 Msa0690100:CDS
ACTTGGAAAGTACACTGGTG+AGG 0.631708 4_4:+57534856 Msa0690100:CDS
ATGGCCAAAATACCACGCCC+GGG 0.644348 4_4:-57533167 None:intergenic
ACCGCATTGAAGACATGGGG+AGG 0.644971 4_4:+57534764 Msa0690100:CDS
TAAGACCTGATGGAGCAGTA+GGG 0.647498 4_4:-57532291 None:intergenic
TGAACCAATCTCCAAACCCA+TGG 0.649676 4_4:+57534705 Msa0690100:CDS
GAGGGTATAGTCAGCAACTG+TGG 0.652280 4_4:-57534480 None:intergenic
GTAGTATGCAGCTGAACGAG+AGG 0.655895 4_4:-57533789 None:intergenic
GCTCAACTTGGAAAGTACAC+TGG 0.658104 4_4:+57534851 Msa0690100:CDS
CATGATACCAGGGACAGCTG+GGG 0.665632 4_4:-57534525 None:intergenic
GATGAGTCCAATGCTACATG+TGG 0.669307 4_4:+57533191 Msa0690100:CDS
AGGCCGCGCAGAGAACGTGA+AGG 0.669516 4_4:+57534784 Msa0690100:CDS
ATGATACCAGGGACAGCTGG+GGG 0.672628 4_4:-57534524 None:intergenic
AGAAAACAATTGCTTCACCC+GGG 0.673634 4_4:+57533150 Msa0690100:intron
TCATCGTTGGAACCAGCTAG+GGG 0.675575 4_4:-57533737 None:intergenic
CAATATGCATCACCATTACG+TGG 0.680363 4_4:-57531961 None:intergenic
ACATAGAAGAAGGTTGACGT+AGG 0.687898 4_4:-57532252 None:intergenic
CTGCCTTCACGTTCTCTGCG+CGG 0.701188 4_4:-57534787 None:intergenic
GCCTCCCCATGTCTTCAATG+CGG 0.705321 4_4:-57534765 None:intergenic
CGATGAGCTCGTCAAGACCG+CGG 0.707845 4_4:+57532336 Msa0690100:CDS
TCAGCTGCATACTACCAACA+AGG 0.710256 4_4:+57533797 Msa0690100:CDS
GTTAATGATGGTGTTGACGG+AGG 0.728084 4_4:+57534986 Msa0690100:three_prime_UTR
TGTCACATACCATGATACCA+GGG 0.730745 4_4:-57534535 None:intergenic
AATACCGCATTGAAGACATG+GGG 0.731314 4_4:+57534761 Msa0690100:CDS
ATGAGTCCAATGCTACATGT+GGG 0.746520 4_4:+57533192 Msa0690100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCATAATAATATACAT+CGG - chr4_4:57533522-57533541 None:intergenic 10.0%
!!! TATTTTTTTTTTTTTGTTTG+TGG + chr4_4:57535081-57535100 Msa0690100:intron 10.0%
!!! ACATTTTCTTGTATAAAAAA+TGG + chr4_4:57532613-57532632 Msa0690100:intron 15.0%
!! AATCACTTATATAATTTGAA+TGG - chr4_4:57534050-57534069 None:intergenic 15.0%
!! AAAGAATAATGTTATGTATT+TGG - chr4_4:57534565-57534584 None:intergenic 15.0%
!! ATGTTAGTAATTGTTATGTT+AGG + chr4_4:57532386-57532405 Msa0690100:intron 20.0%
!!! ATAAGCTATTTTTATAGCAA+AGG + chr4_4:57532731-57532750 Msa0690100:intron 20.0%
!!! TGCAATATTTTATGTTTCAT+TGG + chr4_4:57533084-57533103 Msa0690100:intron 20.0%
!! TTCATATTATTGTTTATGTC+AGG - chr4_4:57533632-57533651 None:intergenic 20.0%
!! ACAAATTTCAATTGCATATT+AGG + chr4_4:57533925-57533944 Msa0690100:intron 20.0%
!!! TGTGTAATATTTTATAGTCT+TGG + chr4_4:57535044-57535063 Msa0690100:three_prime_UTR 20.0%
!!! AGATTTTATTGAAGTTGTAA+AGG - chr4_4:57535121-57535140 None:intergenic 20.0%
!!! TTATATCTCTCCTTTTAATT+GGG - chr4_4:57535222-57535241 None:intergenic 20.0%
!!! TTTATATCTCTCCTTTTAAT+TGG - chr4_4:57535223-57535242 None:intergenic 20.0%
!! TTAAGCCTATTATTTTCCTT+AGG + chr4_4:57531914-57531933 Msa0690100:five_prime_UTR 25.0%
! TCTAACCTAAGGAAAATAAT+AGG - chr4_4:57531922-57531941 None:intergenic 25.0%
!!! ATTGGTTTTTTTCTAACCTA+AGG - chr4_4:57531933-57531952 None:intergenic 25.0%
!!! GTAAAAGTATAAGATGCTTT+TGG + chr4_4:57532645-57532664 Msa0690100:intron 25.0%
! TCCAAGATAGCTTATAAAAA+CGG - chr4_4:57532796-57532815 None:intergenic 25.0%
! AATTGATGAAAAGAATAAGC+AGG + chr4_4:57533488-57533507 Msa0690100:intron 25.0%
! TCTAATAGAGTGATATCATT+TGG + chr4_4:57533562-57533581 Msa0690100:intron 25.0%
! TTTATGTGTCATGAACAATA+GGG + chr4_4:57533707-57533726 Msa0690100:intron 25.0%
! ATATGCAATTGAAATTTGTG+TGG - chr4_4:57533924-57533943 None:intergenic 25.0%
! GTCAAATACAATTTGTACAT+AGG - chr4_4:57534174-57534193 None:intergenic 25.0%
! TATTTGACTAGAATGTTCTT+TGG + chr4_4:57534186-57534205 Msa0690100:intron 25.0%
! GCTAAAATATGTCCATTTAA+TGG + chr4_4:57534247-57534266 Msa0690100:intron 25.0%
! TGTCCATTTAATGGTTTATT+AGG + chr4_4:57534256-57534275 Msa0690100:intron 25.0%
! TGTCCTAATAAACCATTAAA+TGG - chr4_4:57534262-57534281 None:intergenic 25.0%
! TTAATGGTTTATTAGGACAA+CGG + chr4_4:57534263-57534282 Msa0690100:intron 25.0%
!! ACACCCAAATGTTTAAAATT+TGG + chr4_4:57535184-57535203 Msa0690100:three_prime_UTR 25.0%
!! CTGCCAAATTTTAAACATTT+GGG - chr4_4:57535190-57535209 None:intergenic 25.0%
!! ACTGCCAAATTTTAAACATT+TGG - chr4_4:57535191-57535210 None:intergenic 25.0%
! AATAGGCTTAAATGCACTTT+TGG - chr4_4:57531905-57531924 None:intergenic 30.0%
GATGATAATTCATGCTTGTT+TGG - chr4_4:57531994-57532013 None:intergenic 30.0%
!! AAGCAGTTAATGTTTTTGTG+TGG + chr4_4:57532090-57532109 Msa0690100:five_prime_UTR 30.0%
TGTTATGTTAGGAGTGAATA+TGG + chr4_4:57532397-57532416 Msa0690100:intron 30.0%
!!! ATGAGATGCTTCTAGTTTTA+AGG - chr4_4:57532473-57532492 None:intergenic 30.0%
GACAATCAAATTGATACATG+TGG + chr4_4:57532575-57532594 Msa0690100:intron 30.0%
CAAGAAAATGTTCTTACAAG+TGG - chr4_4:57532604-57532623 None:intergenic 30.0%
!! TCCGTTTTTATAAGCTATCT+TGG + chr4_4:57532792-57532811 Msa0690100:intron 30.0%
TAAAGTGATGTGACATAGAA+TGG + chr4_4:57532999-57533018 Msa0690100:intron 30.0%
CAACAGAATGTAATTCCAAA+TGG - chr4_4:57533431-57533450 None:intergenic 30.0%
ACATGACAGATCTTTATGTA+TGG - chr4_4:57533606-57533625 None:intergenic 30.0%
GTTTATGTGTCATGAACAAT+AGG + chr4_4:57533706-57533725 Msa0690100:intron 30.0%
! ATTCTGATTTTGCTTCCATA+GGG - chr4_4:57533864-57533883 None:intergenic 30.0%
! AATTCTGATTTTGCTTCCAT+AGG - chr4_4:57533865-57533884 None:intergenic 30.0%
! ATGAGTGTGATTTAAAACCT+TGG + chr4_4:57534225-57534244 Msa0690100:intron 30.0%
!!! AAATGGACATATTTTAGCCA+AGG - chr4_4:57534245-57534264 None:intergenic 30.0%
!!! AACTTTTGAAGTAGCACAAA+AGG + chr4_4:57534343-57534362 Msa0690100:CDS 30.0%
GCTACTCTTACTAAAAATGT+TGG + chr4_4:57534918-57534937 Msa0690100:exon 30.0%
CATTACGTGGTTGAAATCAT+TGG - chr4_4:57531951-57531970 None:intergenic 35.0%
CAATGATTTCAACCACGTAA+TGG + chr4_4:57531949-57531968 Msa0690100:five_prime_UTR 35.0%
TTGTTCTTGACAAGTCTGAA+TGG + chr4_4:57532212-57532231 Msa0690100:CDS 35.0%
TGTTCTTGACAAGTCTGAAT+GGG + chr4_4:57532213-57532232 Msa0690100:CDS 35.0%
CTTACAACAGACATAGAAGA+AGG - chr4_4:57532265-57532284 None:intergenic 35.0%
!! AAAGAGAAAAAGAAGTACCG+CGG - chr4_4:57532356-57532375 None:intergenic 35.0%
CGGAATAATAAAGAAGTGGA+GGG - chr4_4:57532425-57532444 None:intergenic 35.0%
GAAGCGGAATAATAAAGAAG+TGG - chr4_4:57532429-57532448 None:intergenic 35.0%
!!! AGATGCTTCTAGTTTTAAGG+TGG - chr4_4:57532470-57532489 None:intergenic 35.0%
GTCTCACAATTGCTTATATC+AGG + chr4_4:57532888-57532907 Msa0690100:intron 35.0%
AATGAATTCAAAGAGTCCCA+AGG + chr4_4:57532927-57532946 Msa0690100:intron 35.0%
!!! TTGTTTTTGTTGCTTGTGTG+TGG + chr4_4:57533123-57533142 Msa0690100:intron 35.0%
GATATATACTCTCCAAGTGA+TGG - chr4_4:57533293-57533312 None:intergenic 35.0%
! TCACTTGGAGAGTATATATC+TGG + chr4_4:57533293-57533312 Msa0690100:CDS 35.0%
CAGACATGATGTTTAACGTA+TGG + chr4_4:57533684-57533703 Msa0690100:intron 35.0%
! TTCTGATTTTGCTTCCATAG+GGG - chr4_4:57533863-57533882 None:intergenic 35.0%
TTGACGTTGCATGATAATCA+GGG - chr4_4:57534123-57534142 None:intergenic 35.0%
TTGAAGTAGCACAAAAGGTT+TGG + chr4_4:57534348-57534367 Msa0690100:CDS 35.0%
TGAAGTAGCACAAAAGGTTT+GGG + chr4_4:57534349-57534368 Msa0690100:CDS 35.0%
TGAGAACAATGTCCAATTTG+AGG + chr4_4:57534394-57534413 Msa0690100:CDS 35.0%
GAGAACAATGTCCAATTTGA+GGG + chr4_4:57534395-57534414 Msa0690100:CDS 35.0%
! TGCTATGTACAGTTTTTGTC+TGG + chr4_4:57534641-57534660 Msa0690100:intron 35.0%
! TATGTACAGTTTTTGTCTGG+TGG + chr4_4:57534644-57534663 Msa0690100:intron 35.0%
! ATGTCTTCAATGCGGTATTT+TGG - chr4_4:57534760-57534779 None:intergenic 35.0%
AAAATACCGCATTGAAGACA+TGG + chr4_4:57534759-57534778 Msa0690100:CDS 35.0%
AAATACCGCATTGAAGACAT+GGG + chr4_4:57534760-57534779 Msa0690100:CDS 35.0%
TTTGACGAACAATTCCTTCT+TGG - chr4_4:57534897-57534916 None:intergenic 35.0%
AAGAAGGAATTGTTCGTCAA+AGG + chr4_4:57534896-57534915 Msa0690100:CDS 35.0%
GTCCATGAAACCCAATTAAA+AGG + chr4_4:57535209-57535228 Msa0690100:three_prime_UTR 35.0%
!! CTCCTTTTAATTGGGTTTCA+TGG - chr4_4:57535214-57535233 None:intergenic 35.0%
CAATATGCATCACCATTACG+TGG - chr4_4:57531964-57531983 None:intergenic 40.0%
TCCACATGTCAAGTGAAGAT+AGG + chr4_4:57532012-57532031 Msa0690100:five_prime_UTR 40.0%
ACCTATCTTCACTTGACATG+TGG - chr4_4:57532016-57532035 None:intergenic 40.0%
GTCAAGTGATGTCTCATTTG+CGG - chr4_4:57532052-57532071 None:intergenic 40.0%
GTGAGTGAGTGTAAGAACTA+TGG + chr4_4:57532156-57532175 Msa0690100:exon 40.0%
ACATAGAAGAAGGTTGACGT+AGG - chr4_4:57532255-57532274 None:intergenic 40.0%
GCGGAATAATAAAGAAGTGG+AGG - chr4_4:57532426-57532445 None:intergenic 40.0%
!!! TTCTAGTTTTAAGGTGGCTG+TGG - chr4_4:57532464-57532483 None:intergenic 40.0%
CACTTATAGATAAGCGCTCA+AGG + chr4_4:57532686-57532705 Msa0690100:intron 40.0%
CAGAAAACAATTGCTTCACC+CGG + chr4_4:57533149-57533168 Msa0690100:intron 40.0%
AGAAAACAATTGCTTCACCC+GGG + chr4_4:57533150-57533169 Msa0690100:intron 40.0%
ATGAGTCCAATGCTACATGT+GGG + chr4_4:57533192-57533211 Msa0690100:CDS 40.0%
TGATGGAACTGTCACAAGAA+GGG - chr4_4:57533276-57533295 None:intergenic 40.0%
GAGAGTTTCCTCAAAGAGAA+TGG - chr4_4:57533321-57533340 None:intergenic 40.0%
CTCTACCAATCTACAGTTGA+TGG + chr4_4:57533338-57533357 Msa0690100:CDS 40.0%
!! ACCAATCTACAGTTGATGGA+AGG + chr4_4:57533342-57533361 Msa0690100:CDS 40.0%
TCCTTCCATCAACTGTAGAT+TGG - chr4_4:57533346-57533365 None:intergenic 40.0%
ATCGAGCAAAACATTGTTCC+TGG + chr4_4:57533383-57533402 Msa0690100:CDS 40.0%
TCCTGGTATCAAAGTTGACA+AGG + chr4_4:57533400-57533419 Msa0690100:CDS 40.0%
ACCTTGTCAACTTTGATACC+AGG - chr4_4:57533404-57533423 None:intergenic 40.0%
GTTGACAAGGTAAAGCCATT+TGG + chr4_4:57533413-57533432 Msa0690100:intron 40.0%
! TCTGATTTTGCTTCCATAGG+GGG - chr4_4:57533862-57533881 None:intergenic 40.0%
TTGCATGATAATCAGGGTCA+TGG - chr4_4:57534117-57534136 None:intergenic 40.0%
CTTGACGTTGCATGATAATC+AGG - chr4_4:57534124-57534143 None:intergenic 40.0%
GGTTTATTAGGACAACGGAT+TGG + chr4_4:57534268-57534287 Msa0690100:intron 40.0%
! AGATCTCTGGTTCCACAATT+GGG - chr4_4:57534295-57534314 None:intergenic 40.0%
! AAGATCTCTGGTTCCACAAT+TGG - chr4_4:57534296-57534315 None:intergenic 40.0%
ATCTTGCTTGATGGAGAACA+TGG + chr4_4:57534311-57534330 Msa0690100:CDS 40.0%
ATTGGACATTGTTCTCAGCA+AGG - chr4_4:57534391-57534410 None:intergenic 40.0%
TGTCACATACCATGATACCA+GGG - chr4_4:57534538-57534557 None:intergenic 40.0%
!! GTTCATGGCATTCAAGTTGA+GGG - chr4_4:57534690-57534709 None:intergenic 40.0%
AATACCGCATTGAAGACATG+GGG + chr4_4:57534761-57534780 Msa0690100:CDS 40.0%
!! TTGAGCAATTGAGTTGGACT+TGG - chr4_4:57534837-57534856 None:intergenic 40.0%
TCCAACTCAATTGCTCAACT+TGG + chr4_4:57534839-57534858 Msa0690100:CDS 40.0%
! TCCAAGTTGAGCAATTGAGT+TGG - chr4_4:57534843-57534862 None:intergenic 40.0%
! GCAGTTAATGATGGTGTTGA+CGG + chr4_4:57534983-57535002 Msa0690100:three_prime_UTR 40.0%
TGACAAGTCTGAATGGGTGA+AGG + chr4_4:57532219-57532238 Msa0690100:CDS 45.0%
GACAAGTCTGAATGGGTGAA+GGG + chr4_4:57532220-57532239 Msa0690100:CDS 45.0%
AGAAGAAGGTTGACGTAGGA+GGG - chr4_4:57532251-57532270 None:intergenic 45.0%
TAGAAGAAGGTTGACGTAGG+AGG - chr4_4:57532252-57532271 None:intergenic 45.0%
TAAGACCTGATGGAGCAGTA+GGG - chr4_4:57532294-57532313 None:intergenic 45.0%
GCTCTAATGGTAAGACCTGA+TGG - chr4_4:57532304-57532323 None:intergenic 45.0%
TCAGGTCTTACCATTAGAGC+TGG + chr4_4:57532304-57532323 Msa0690100:CDS 45.0%
!!! TAGTTTTAAGGTGGCTGTGG+TGG - chr4_4:57532461-57532480 None:intergenic 45.0%
! TGTAGCATTGGACTCATCCA+TGG - chr4_4:57533189-57533208 None:intergenic 45.0%
GATGAGTCCAATGCTACATG+TGG + chr4_4:57533191-57533210 Msa0690100:CDS 45.0%
!! GGAAGCGTTTGGCTTCAATT+GGG + chr4_4:57533213-57533232 Msa0690100:CDS 45.0%
! GTGATGGAACTGTCACAAGA+AGG - chr4_4:57533277-57533296 None:intergenic 45.0%
CTTGTGACAGTTCCATCACT+TGG + chr4_4:57533278-57533297 Msa0690100:CDS 45.0%
!! ATCTGGTGCCATTCTCTTTG+AGG + chr4_4:57533310-57533329 Msa0690100:CDS 45.0%
GTGTCATGAACAATAGGGTC+TGG + chr4_4:57533712-57533731 Msa0690100:intron 45.0%
TTCATCGTTGGAACCAGCTA+GGG - chr4_4:57533741-57533760 None:intergenic 45.0%
ATTCATCGTTGGAACCAGCT+AGG - chr4_4:57533742-57533761 None:intergenic 45.0%
CTGGTTCCAACGATGAATCA+TGG + chr4_4:57533744-57533763 Msa0690100:CDS 45.0%
TTGGCACCATGATTCATCGT+TGG - chr4_4:57533753-57533772 None:intergenic 45.0%
! AACGATGAATCATGGTGCCA+AGG + chr4_4:57533752-57533771 Msa0690100:CDS 45.0%
TCAGCTGCATACTACCAACA+AGG + chr4_4:57533797-57533816 Msa0690100:CDS 45.0%
ACAGTTGTGAGCATCCCAAA+CGG + chr4_4:57533951-57533970 Msa0690100:CDS 45.0%
TCGCTATGCTGCAATTAGTC+AGG + chr4_4:57534016-57534035 Msa0690100:CDS 45.0%
GAACCAGAGATCTTGCTTGA+TGG + chr4_4:57534302-57534321 Msa0690100:CDS 45.0%
TCTCCATCAAGCAAGATCTC+TGG - chr4_4:57534308-57534327 None:intergenic 45.0%
TGAGGAGAATGCCCTCAAAT+TGG - chr4_4:57534409-57534428 None:intergenic 45.0%
GTGTCACATACCATGATACC+AGG - chr4_4:57534539-57534558 None:intergenic 45.0%
! TTTGTCTGGTGGACAATCTG+AGG + chr4_4:57534655-57534674 Msa0690100:CDS 45.0%
!! GGTTCATGGCATTCAAGTTG+AGG - chr4_4:57534691-57534710 None:intergenic 45.0%
! TGGGTTTGGAGATTGGTTCA+TGG - chr4_4:57534705-57534724 None:intergenic 45.0%
TGAACCAATCTCCAAACCCA+TGG + chr4_4:57534705-57534724 Msa0690100:CDS 45.0%
! GCTCAACTTGGAAAGTACAC+TGG + chr4_4:57534851-57534870 Msa0690100:CDS 45.0%
! ACTTGGAAAGTACACTGGTG+AGG + chr4_4:57534856-57534875 Msa0690100:CDS 45.0%
! CTTGGAAAGTACACTGGTGA+GGG + chr4_4:57534857-57534876 Msa0690100:CDS 45.0%
CAATTCCTTCTTGGCTTCCT+CGG - chr4_4:57534888-57534907 None:intergenic 45.0%
GCAGCACTAGCAGTTAATGA+TGG + chr4_4:57534974-57534993 Msa0690100:three_prime_UTR 45.0%
!! GTTAATGATGGTGTTGACGG+AGG + chr4_4:57534986-57535005 Msa0690100:three_prime_UTR 45.0%
GTAAGACCTGATGGAGCAGT+AGG - chr4_4:57532295-57532314 None:intergenic 50.0%
! GGCGTATGAACCAGCTCTAA+TGG - chr4_4:57532317-57532336 None:intergenic 50.0%
! GTGGTGGAGGAGTTAAGAAG+CGG - chr4_4:57532445-57532464 None:intergenic 50.0%
!!! TTTTAAGGTGGCTGTGGTGG+AGG - chr4_4:57532458-57532477 None:intergenic 50.0%
AGTCCCAAGGTCTAAGAGAG+AGG + chr4_4:57532940-57532959 Msa0690100:intron 50.0%
GTCCCAAGGTCTAAGAGAGA+GGG + chr4_4:57532941-57532960 Msa0690100:intron 50.0%
CTCCCTCTCTCTTAGACCTT+GGG - chr4_4:57532946-57532965 None:intergenic 50.0%
TCTCCCTCTCTCTTAGACCT+TGG - chr4_4:57532947-57532966 None:intergenic 50.0%
AGGTCTAAGAGAGAGGGAGA+AGG + chr4_4:57532947-57532966 Msa0690100:intron 50.0%
ACGCTTCCCACATGTAGCAT+TGG - chr4_4:57533201-57533220 None:intergenic 50.0%
!! TGCTACATGTGGGAAGCGTT+TGG + chr4_4:57533202-57533221 Msa0690100:CDS 50.0%
!! GGGAAGCGTTTGGCTTCAAT+TGG + chr4_4:57533212-57533231 Msa0690100:CDS 50.0%
TCATCGTTGGAACCAGCTAG+GGG - chr4_4:57533740-57533759 None:intergenic 50.0%
! TGAATCATGGTGCCAAGGTC+TGG + chr4_4:57533757-57533776 Msa0690100:CDS 50.0%
GTAGTATGCAGCTGAACGAG+AGG - chr4_4:57533792-57533811 None:intergenic 50.0%
! AAGGTGCTCGTTTCGCCAAA+TGG + chr4_4:57533816-57533835 Msa0690100:CDS 50.0%
!! CAACGGATTGGTCCCAATTG+TGG + chr4_4:57534280-57534299 Msa0690100:CDS 50.0%
AGCACAAAAGGTTTGGGCTG+AGG + chr4_4:57534355-57534374 Msa0690100:CDS 50.0%
CATTCTCCTCAAGCCTAGCA+TGG + chr4_4:57534418-57534437 Msa0690100:CDS 50.0%
GAGTAACCATGCTAGGCTTG+AGG - chr4_4:57534427-57534446 None:intergenic 50.0%
AAGCCTAGCATGGTTACTCC+AGG + chr4_4:57534428-57534447 Msa0690100:CDS 50.0%
GTATAGTCAGCAACTGTGGC+AGG - chr4_4:57534479-57534498 None:intergenic 50.0%
! GAGGGTATAGTCAGCAACTG+TGG - chr4_4:57534483-57534502 None:intergenic 50.0%
ATACCCTCAAGCTCCTTCAC+AGG + chr4_4:57534495-57534514 Msa0690100:CDS 50.0%
TCTCCTGTGAAGGAGCTTGA+GGG - chr4_4:57534501-57534520 None:intergenic 50.0%
TTCTCCTGTGAAGGAGCTTG+AGG - chr4_4:57534502-57534521 None:intergenic 50.0%
ATGAGAACGACACGTGCCAT+GGG - chr4_4:57534724-57534743 None:intergenic 50.0%
TATGAGAACGACACGTGCCA+TGG - chr4_4:57534725-57534744 None:intergenic 50.0%
!! CAATTGAGTTGGACTTGGCG+CGG - chr4_4:57534832-57534851 None:intergenic 50.0%
TGAATCCGAGGAAGCCAAGA+AGG + chr4_4:57534880-57534899 Msa0690100:CDS 50.0%
TGCAACCCTACTGCTCCATC+AGG + chr4_4:57532286-57532305 Msa0690100:CDS 55.0%
! TTCACCCGGGCGTGGTATTT+TGG + chr4_4:57533163-57533182 Msa0690100:CDS 55.0%
ATGGCCAAAATACCACGCCC+GGG - chr4_4:57533170-57533189 None:intergenic 55.0%
CATGGCCAAAATACCACGCC+CGG - chr4_4:57533171-57533190 None:intergenic 55.0%
!! CCATGCTTGGCGGTTAGCTT+CGG - chr4_4:57533249-57533268 None:intergenic 55.0%
! CAAGAAGGGTACGCCATGCT+TGG - chr4_4:57533262-57533281 None:intergenic 55.0%
! TCATGGTGCCAAGGTCTGGA+CGG + chr4_4:57533761-57533780 Msa0690100:CDS 55.0%
TGGCGAAACGAGCACCTTGT+TGG - chr4_4:57533814-57533833 None:intergenic 55.0%
! GCAGGGGTACACTCACCATT+TGG - chr4_4:57533834-57533853 None:intergenic 55.0%
TTCCATAGGGGGATCGTGCA+GGG - chr4_4:57533851-57533870 None:intergenic 55.0%
TCCTTGACAGCCAGAGCAGA+GGG - chr4_4:57533978-57533997 None:intergenic 55.0%
TTCCTTGACAGCCAGAGCAG+AGG - chr4_4:57533979-57533998 None:intergenic 55.0%
GCTCCTGGAGTAACCATGCT+AGG - chr4_4:57534434-57534453 None:intergenic 55.0%
TACTCCAGGAGCTGAGTGCA+AGG + chr4_4:57534442-57534461 Msa0690100:CDS 55.0%
TTGTCCTTGCACTCAGCTCC+TGG - chr4_4:57534449-57534468 None:intergenic 55.0%
AGGAGCTGAGTGCAAGGACA+AGG + chr4_4:57534448-57534467 Msa0690100:CDS 55.0%
CTGGGGGAATTCTCCTGTGA+AGG - chr4_4:57534511-57534530 None:intergenic 55.0%
ATGATACCAGGGACAGCTGG+GGG - chr4_4:57534527-57534546 None:intergenic 55.0%
CATGATACCAGGGACAGCTG+GGG - chr4_4:57534528-57534547 None:intergenic 55.0%
CCATGATACCAGGGACAGCT+GGG - chr4_4:57534529-57534548 None:intergenic 55.0%
ACCATGATACCAGGGACAGC+TGG - chr4_4:57534530-57534549 None:intergenic 55.0%
CGTGCCATGGGTTTGGAGAT+TGG - chr4_4:57534712-57534731 None:intergenic 55.0%
AACGACACGTGCCATGGGTT+TGG - chr4_4:57534719-57534738 None:intergenic 55.0%
ACCGCATTGAAGACATGGGG+AGG + chr4_4:57534764-57534783 Msa0690100:CDS 55.0%
GCCTCCCCATGTCTTCAATG+CGG - chr4_4:57534768-57534787 None:intergenic 55.0%
CGCGGTCTTGACGAGCTCAT+CGG - chr4_4:57532338-57532357 None:intergenic 60.0%
CGATGAGCTCGTCAAGACCG+CGG + chr4_4:57532336-57532355 Msa0690100:CDS 60.0%
ACAATTGCTTCACCCGGGCG+TGG + chr4_4:57533155-57533174 Msa0690100:CDS 60.0%
!!! CGGGCGTGGTATTTTGGCCA+TGG + chr4_4:57533169-57533188 Msa0690100:CDS 60.0%
CCGAAGCTAACCGCCAAGCA+TGG + chr4_4:57533246-57533265 Msa0690100:CDS 60.0%
! GAAGGGTACGCCATGCTTGG+CGG - chr4_4:57533259-57533278 None:intergenic 60.0%
AGGCAAGACCGTCCAGACCT+TGG - chr4_4:57533772-57533791 None:intergenic 60.0%
TCCATAGGGGGATCGTGCAG+GGG - chr4_4:57533850-57533869 None:intergenic 60.0%
CTTCCATAGGGGGATCGTGC+AGG - chr4_4:57533852-57533871 None:intergenic 60.0%
CCAGAGCAGAGGGACCGTTT+GGG - chr4_4:57533968-57533987 None:intergenic 60.0%
TCCCTCTGCTCTGGCTGTCA+AGG + chr4_4:57533974-57533993 Msa0690100:CDS 60.0%
TGGCTGTCAAGGAAGCAGCC+TGG + chr4_4:57533985-57534004 Msa0690100:CDS 60.0%
GGCTGTCAAGGAAGCAGCCT+GGG + chr4_4:57533986-57534005 Msa0690100:CDS 60.0%
GCTGTCAAGGAAGCAGCCTG+GGG + chr4_4:57533987-57534006 Msa0690100:CDS 60.0%
CAAGGAAGCAGCCTGGGGTT+TGG + chr4_4:57533992-57534011 Msa0690100:CDS 60.0%
AGCATAGCGAGCCAAACCCC+AGG - chr4_4:57534006-57534025 None:intergenic 60.0%
GTCAGCAACTGTGGCAGGAG+AGG - chr4_4:57534474-57534493 None:intergenic 60.0%
AGAATTCCCCCAGCTGTCCC+TGG + chr4_4:57534518-57534537 Msa0690100:CDS 60.0%
CCCAGCTGTCCCTGGTATCA+TGG + chr4_4:57534526-57534545 Msa0690100:CDS 60.0%
CTGCCTTCACGTTCTCTGCG+CGG - chr4_4:57534790-57534809 None:intergenic 60.0%
CACTGGTGAGGGTGAATCCG+AGG + chr4_4:57534868-57534887 Msa0690100:CDS 60.0%
TAGGGTCTGGTGCCCCTAGC+TGG + chr4_4:57533725-57533744 Msa0690100:intron 65.0%
ACCCCTGCACGATCCCCCTA+TGG + chr4_4:57533846-57533865 Msa0690100:intron 65.0%
CCCAAACGGTCCCTCTGCTC+TGG + chr4_4:57533965-57533984 Msa0690100:CDS 65.0%
GCCAGAGCAGAGGGACCGTT+TGG - chr4_4:57533969-57533988 None:intergenic 65.0%
AGGCCGCGCAGAGAACGTGA+AGG + chr4_4:57534784-57534803 Msa0690100:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 57531884 57535242 57531884 ID=Msa0690100;Name=Msa0690100
chr4_4 mRNA 57531884 57535242 57531884 ID=Msa0690100-mRNA-1;Parent=Msa0690100;Name=Msa0690100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=291|1|1|1|0.83|0.71|7|290|400
chr4_4 exon 57531884 57532357 57531884 ID=Msa0690100-mRNA-1:exon:15387;Parent=Msa0690100-mRNA-1
chr4_4 exon 57533152 57533421 57533152 ID=Msa0690100-mRNA-1:exon:15388;Parent=Msa0690100-mRNA-1
chr4_4 exon 57533728 57533837 57533728 ID=Msa0690100-mRNA-1:exon:15389;Parent=Msa0690100-mRNA-1
chr4_4 exon 57533947 57534037 57533947 ID=Msa0690100-mRNA-1:exon:15390;Parent=Msa0690100-mRNA-1
chr4_4 exon 57534278 57534547 57534278 ID=Msa0690100-mRNA-1:exon:15391;Parent=Msa0690100-mRNA-1
chr4_4 exon 57534653 57535075 57534653 ID=Msa0690100-mRNA-1:exon:15392;Parent=Msa0690100-mRNA-1
chr4_4 exon 57535097 57535242 57535097 ID=Msa0690100-mRNA-1:exon:15393;Parent=Msa0690100-mRNA-1
chr4_4 five_prime_UTR 57531884 57532174 57531884 ID=Msa0690100-mRNA-1:five_prime_utr;Parent=Msa0690100-mRNA-1
chr4_4 CDS 57532175 57532357 57532175 ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4 CDS 57533152 57533421 57533152 ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4 CDS 57533728 57533837 57533728 ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4 CDS 57533947 57534037 57533947 ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4 CDS 57534278 57534547 57534278 ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4 CDS 57534653 57534931 57534653 ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4 three_prime_UTR 57534932 57535075 57534932 ID=Msa0690100-mRNA-1:three_prime_utr;Parent=Msa0690100-mRNA-1
chr4_4 three_prime_UTR 57535097 57535242 57535097 ID=Msa0690100-mRNA-1:three_prime_utr;Parent=Msa0690100-mRNA-1
Gene Sequence

>Msa0690100

ATGGCTTCTGCTTCAGCATCTTGTTTCAAGTCATCACTTGTTCTTGACAAGTCTGAATGGGTGAAGGGACAAACCCTCCTACGTCAACCTTCTTCTATGTCTGTTGTAAGATGCAACCCTACTGCTCCATCAGGTCTTACCATTAGAGCTGGTTCATACGCCGATGAGCTCGTCAAGACCGCGAAAACAATTGCTTCACCCGGGCGTGGTATTTTGGCCATGGATGAGTCCAATGCTACATGTGGGAAGCGTTTGGCTTCAATTGGGCTAGAGAACACCGAAGCTAACCGCCAAGCATGGCGTACCCTTCTTGTGACAGTTCCATCACTTGGAGAGTATATATCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCTACAGTTGATGGAAGGAAGATTGTTGACGTGCTTATCGAGCAAAACATTGTTCCTGGTATCAAAGTTGACAAGGGTCTGGTGCCCCTAGCTGGTTCCAACGATGAATCATGGTGCCAAGGTCTGGACGGTCTTGCCTCTCGTTCAGCTGCATACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACAGTTGTGAGCATCCCAAACGGTCCCTCTGCTCTGGCTGTCAAGGAAGCAGCCTGGGGTTTGGCTCGCTATGCTGCAATTAGTCAGGACAACGGATTGGTCCCAATTGTGGAACCAGAGATCTTGCTTGATGGAGAACATGGTATTGACAGAACTTTTGAAGTAGCACAAAAGGTTTGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCAATTTGAGGGCATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCTGAGTGCAAGGACAAGGCCTCTCCTGCCACAGTTGCTGACTATACCCTCAAGCTCCTTCACAGGAGAATTCCCCCAGCTGTCCCTGGTATCATGTTTTTGTCTGGTGGACAATCTGAGGTTGAAGCAACCCTCAACTTGAATGCCATGAACCAATCTCCAAACCCATGGCACGTGTCGTTCTCATACGCGAGAGCTCTCCAAAATACCGCATTGAAGACATGGGGAGGCCGCGCAGAGAACGTGAAGGCAGCTCAAGAAGCGCTTCTTTTCCGCGCCAAGTCCAACTCAATTGCTCAACTTGGAAAGTACACTGGTGAGGGTGAATCCGAGGAAGCCAAGAAGGAATTGTTCGTCAAAGGCTACTCTTACTAA

Protein sequence

>Msa0690100

MASASASCFKSSLVLDKSEWVKGQTLLRQPSSMSVVRCNPTAPSGLTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAWRTLLVTVPSLGEYISGAILFEETLYQSTVDGRKIVDVLIEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVQFEGILLKPSMVTPGAECKDKASPATVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRAENVKAAQEALLFRAKSNSIAQLGKYTGEGESEEAKKELFVKGYSY*