AlfalfaGEDB | Msa0690100

M. sativa cultivar zhongmu-4 / Msa0690100

KEGG: K01623
GO: -
PFAM: PF00274.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690100	XP_003607065.1	99.000	400	4	0	1	400	1	400	0.0	812

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690100	sp\|Q01516\|ALFC1_PEA	95.506	356	16	0	45	400	1	356	0.0	701

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690100	G7JJV9	99.000	400	4	0	1	400	1	400	0.0	812

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0690100	0.904713	9.201625e-80	-8.615850e-47
Msa0000800	Msa0690100	-0.863275	2.797101e-64	-8.615850e-47
Msa0001040	Msa0690100	0.825939	3.565039e-54	-8.615850e-47
Msa0001510	Msa0690100	0.883889	3.059889e-71	-8.615850e-47
Msa0001550	Msa0690100	0.866471	2.783005e-65	-8.615850e-47
Msa0002110	Msa0690100	0.939581	9.986606e-100	-8.615850e-47
Msa0002690	Msa0690100	0.951428	2.086729e-109	-8.615850e-47
Msa0002700	Msa0690100	0.953911	9.613946e-112	-8.615850e-47
Msa0003340	Msa0690100	0.889299	2.743463e-73	-8.615850e-47
Msa0004180	Msa0690100	0.939390	1.377422e-99	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690100	MtrunA17_Chr4g0035951	99.000	400	4	0	1	400	1	400	0.0	812
Msa0690100	MtrunA17_Chr4g0028361	98.750	400	5	0	1	400	1	400	0.0	811
Msa0690100	MtrunA17_Chr1g0208981	82.535	355	61	1	46	400	38	391	0.0	612
Msa0690100	MtrunA17_Chr4g0035981	95.359	237	11	0	164	400	4	240	3.29e-168	470
Msa0690100	MtrunA17_Chr5g0429051	56.818	352	147	4	53	400	8	358	2.23e-135	391
Msa0690100	MtrunA17_Chr7g0265821	56.534	352	148	4	53	400	8	358	3.76e-135	391
Msa0690100	MtrunA17_Chr5g0447091	56.374	353	150	3	51	400	6	357	2.42e-133	386
Msa0690100	MtrunA17_Chr1g0179211	54.830	352	154	4	53	400	8	358	6.04e-129	375
Msa0690100	MtrunA17_Chr4g0035971	90.000	140	12	2	1	140	1	138	2.51e-81	245
Msa0690100	MtrunA17_Chr5g0429031	57.619	210	88	1	45	253	41	250	3.24e-78	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0690100	AT2G21330.1	83.333	402	62	4	1	400	1	399	0.0	688
Msa0690100	AT4G38970.1	83.709	399	61	3	4	400	2	398	0.0	681
Msa0690100	AT2G21330.3	80.846	402	62	5	1	400	1	389	0.0	659
Msa0690100	AT2G01140.1	75.063	397	92	2	4	400	2	391	0.0	611
Msa0690100	AT2G21330.2	82.903	310	48	4	1	308	1	307	0.0	523
Msa0690100	AT4G38970.2	79.630	324	55	4	4	318	2	323	0.0	518
Msa0690100	AT4G26530.1	56.780	354	148	4	51	400	6	358	2.08e-136	394
Msa0690100	AT4G26530.3	56.780	354	148	4	51	400	6	358	2.08e-136	394
Msa0690100	AT4G26530.2	56.780	354	148	4	51	400	6	358	2.08e-136	394
Msa0690100	AT2G36460.1	56.818	352	147	4	53	400	8	358	6.59e-135	390

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Find 155 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCGCATTGAAGACA+TGG	0.548809	4_4:+57534759	Msa0690100:CDS
AAATACCGCATTGAAGACAT+GGG	0.626712	4_4:+57534760	Msa0690100:CDS
AACGACACGTGCCATGGGTT+TGG	0.390092	4_4:-57534716	None:intergenic
AACGATGAATCATGGTGCCA+AGG	0.589365	4_4:+57533752	Msa0690100:CDS
AAGAAGGAATTGTTCGTCAA+AGG	0.571329	4_4:+57534896	Msa0690100:CDS
AAGATCTCTGGTTCCACAAT+TGG	0.357070	4_4:-57534293	None:intergenic
AAGCCTAGCATGGTTACTCC+AGG	0.551395	4_4:+57534428	Msa0690100:CDS
AAGGTGCTCGTTTCGCCAAA+TGG	0.465409	4_4:+57533816	Msa0690100:CDS
AATACCGCATTGAAGACATG+GGG	0.731314	4_4:+57534761	Msa0690100:CDS
AATAGGCTTAAATGCACTTT+TGG	0.265793	4_4:-57531902	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGATAATTCATGCTTGTT+TGG	-	chr4_4:57531994-57532013	None:intergenic	30.0%
TGTTATGTTAGGAGTGAATA+TGG	+	chr4_4:57532397-57532416	Msa0690100:intron	30.0%
GACAATCAAATTGATACATG+TGG	+	chr4_4:57532575-57532594	Msa0690100:intron	30.0%
CAAGAAAATGTTCTTACAAG+TGG	-	chr4_4:57532604-57532623	None:intergenic	30.0%
TAAAGTGATGTGACATAGAA+TGG	+	chr4_4:57532999-57533018	Msa0690100:intron	30.0%
CAACAGAATGTAATTCCAAA+TGG	-	chr4_4:57533431-57533450	None:intergenic	30.0%
ACATGACAGATCTTTATGTA+TGG	-	chr4_4:57533606-57533625	None:intergenic	30.0%
GTTTATGTGTCATGAACAAT+AGG	+	chr4_4:57533706-57533725	Msa0690100:intron	30.0%
GCTACTCTTACTAAAAATGT+TGG	+	chr4_4:57534918-57534937	Msa0690100:exon	30.0%
CATTACGTGGTTGAAATCAT+TGG	-	chr4_4:57531951-57531970	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	57531884	57535242	57531884	ID=Msa0690100;Name=Msa0690100
chr4_4	mRNA	57531884	57535242	57531884	ID=Msa0690100-mRNA-1;Parent=Msa0690100;Name=Msa0690100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=291\|1\|1\|1\|0.83\|0.71\|7\|290\|400
chr4_4	exon	57531884	57532357	57531884	ID=Msa0690100-mRNA-1:exon:15387;Parent=Msa0690100-mRNA-1
chr4_4	exon	57533152	57533421	57533152	ID=Msa0690100-mRNA-1:exon:15388;Parent=Msa0690100-mRNA-1
chr4_4	exon	57533728	57533837	57533728	ID=Msa0690100-mRNA-1:exon:15389;Parent=Msa0690100-mRNA-1
chr4_4	exon	57533947	57534037	57533947	ID=Msa0690100-mRNA-1:exon:15390;Parent=Msa0690100-mRNA-1
chr4_4	exon	57534278	57534547	57534278	ID=Msa0690100-mRNA-1:exon:15391;Parent=Msa0690100-mRNA-1
chr4_4	exon	57534653	57535075	57534653	ID=Msa0690100-mRNA-1:exon:15392;Parent=Msa0690100-mRNA-1
chr4_4	exon	57535097	57535242	57535097	ID=Msa0690100-mRNA-1:exon:15393;Parent=Msa0690100-mRNA-1
chr4_4	five_prime_UTR	57531884	57532174	57531884	ID=Msa0690100-mRNA-1:five_prime_utr;Parent=Msa0690100-mRNA-1
chr4_4	CDS	57532175	57532357	57532175	ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4	CDS	57533152	57533421	57533152	ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4	CDS	57533728	57533837	57533728	ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4	CDS	57533947	57534037	57533947	ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4	CDS	57534278	57534547	57534278	ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4	CDS	57534653	57534931	57534653	ID=Msa0690100-mRNA-1:cds;Parent=Msa0690100-mRNA-1
chr4_4	three_prime_UTR	57534932	57535075	57534932	ID=Msa0690100-mRNA-1:three_prime_utr;Parent=Msa0690100-mRNA-1
chr4_4	three_prime_UTR	57535097	57535242	57535097	ID=Msa0690100-mRNA-1:three_prime_utr;Parent=Msa0690100-mRNA-1

Gene Sequence

>Msa0690100

ATGGCTTCTGCTTCAGCATCTTGTTTCAAGTCATCACTTGTTCTTGACAAGTCTGAATGGGTGAAGGGACAAACCCTCCTACGTCAACCTTCTTCTATGTCTGTTGTAAGATGCAACCCTACTGCTCCATCAGGTCTTACCATTAGAGCTGGTTCATACGCCGATGAGCTCGTCAAGACCGCGAAAACAATTGCTTCACCCGGGCGTGGTATTTTGGCCATGGATGAGTCCAATGCTACATGTGGGAAGCGTTTGGCTTCAATTGGGCTAGAGAACACCGAAGCTAACCGCCAAGCATGGCGTACCCTTCTTGTGACAGTTCCATCACTTGGAGAGTATATATCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCTACAGTTGATGGAAGGAAGATTGTTGACGTGCTTATCGAGCAAAACATTGTTCCTGGTATCAAAGTTGACAAGGGTCTGGTGCCCCTAGCTGGTTCCAACGATGAATCATGGTGCCAAGGTCTGGACGGTCTTGCCTCTCGTTCAGCTGCATACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACAGTTGTGAGCATCCCAAACGGTCCCTCTGCTCTGGCTGTCAAGGAAGCAGCCTGGGGTTTGGCTCGCTATGCTGCAATTAGTCAGGACAACGGATTGGTCCCAATTGTGGAACCAGAGATCTTGCTTGATGGAGAACATGGTATTGACAGAACTTTTGAAGTAGCACAAAAGGTTTGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCAATTTGAGGGCATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCTGAGTGCAAGGACAAGGCCTCTCCTGCCACAGTTGCTGACTATACCCTCAAGCTCCTTCACAGGAGAATTCCCCCAGCTGTCCCTGGTATCATGTTTTTGTCTGGTGGACAATCTGAGGTTGAAGCAACCCTCAACTTGAATGCCATGAACCAATCTCCAAACCCATGGCACGTGTCGTTCTCATACGCGAGAGCTCTCCAAAATACCGCATTGAAGACATGGGGAGGCCGCGCAGAGAACGTGAAGGCAGCTCAAGAAGCGCTTCTTTTCCGCGCCAAGTCCAACTCAATTGCTCAACTTGGAAAGTACACTGGTGAGGGTGAATCCGAGGAAGCCAAGAAGGAATTGTTCGTCAAAGGCTACTCTTACTAA

Protein sequence

>Msa0690100

MASASASCFKSSLVLDKSEWVKGQTLLRQPSSMSVVRCNPTAPSGLTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAWRTLLVTVPSLGEYISGAILFEETLYQSTVDGRKIVDVLIEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVQFEGILLKPSMVTPGAECKDKASPATVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRAENVKAAQEALLFRAKSNSIAQLGKYTGEGESEEAKKELFVKGYSY*