AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0856080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0856080 MtrunA17_Chr5g0434001 98.252 286 5 0 215 500 322 607 0.0 570
Msa0856080 MtrunA17_Chr5g0434001 98.605 215 3 0 1 215 13 227 1.10e-154 454
Msa0856080 MtrunA17_Chr8g0375501 87.018 285 37 0 216 500 307 591 2.04e-171 496
Msa0856080 MtrunA17_Chr8g0375501 59.314 204 82 1 12 215 9 211 7.32e-83 268
Msa0856080 MtrunA17_Chr6g0480551 85.965 285 40 0 216 500 304 588 4.40e-169 489
Msa0856080 MtrunA17_Chr6g0480551 60.870 207 79 1 9 215 4 208 4.27e-86 276
Msa0856080 MtrunA17_Chr4g0026371 51.254 279 135 1 222 500 312 589 5.18e-98 307
Msa0856080 MtrunA17_Chr4g0026371 45.833 192 104 0 24 215 22 213 7.09e-56 196
Msa0856080 MtrunA17_Chr2g0277491 44.444 270 150 0 231 500 314 583 1.55e-67 227
Msa0856080 MtrunA17_Chr2g0277491 37.037 189 109 5 26 212 18 198 5.52e-36 140
Msa0856080 MtrunA17_Chr8g0380651 43.494 269 152 0 232 500 321 589 2.35e-66 224
Msa0856080 MtrunA17_Chr8g0380651 37.173 191 110 4 26 213 22 205 8.62e-38 146
Msa0856080 MtrunA17_Chr8g0342031 38.790 281 171 1 220 500 369 648 2.30e-65 223
Msa0856080 MtrunA17_Chr3g0136881 35.690 297 190 1 204 500 341 636 1.46e-63 218
Msa0856080 MtrunA17_Chr1g0150181 36.364 297 188 1 204 500 342 637 3.38e-63 217
Msa0856080 MtrunA17_Chr4g0065301 32.982 285 184 4 220 500 375 656 6.41e-45 167
Msa0856080 MtrunA17_Chr5g0448371 34.035 285 176 6 222 500 387 665 9.14e-39 149
Msa0856080 MtrunA17_Chr3g0120461 31.690 284 184 5 222 500 381 659 1.47e-37 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0856080 AT2G01970.1 86.364 286 39 0 215 500 307 592 1.13e-171 497
Msa0856080 AT2G01970.1 61.616 198 75 1 18 215 16 212 1.79e-83 270
Msa0856080 AT5G37310.1 84.912 285 43 0 216 500 309 593 9.47e-169 489
Msa0856080 AT5G37310.1 61.538 208 79 1 8 215 7 213 6.95e-86 276
Msa0856080 AT5G37310.2 84.912 285 43 0 216 500 309 593 9.47e-169 489
Msa0856080 AT5G37310.2 61.538 208 79 1 8 215 7 213 6.95e-86 276
Msa0856080 AT1G14670.1 86.014 286 40 0 215 500 307 592 2.29e-162 473
Msa0856080 AT1G14670.1 61.860 215 79 2 1 215 1 212 2.84e-88 282
Msa0856080 AT1G08350.1 51.220 287 138 2 215 500 223 508 2.38e-97 303
Msa0856080 AT1G08350.1 43.478 115 65 0 90 204 5 119 1.55e-28 119
Msa0856080 AT1G08350.3 51.220 287 138 2 215 500 304 589 1.76e-96 303
Msa0856080 AT1G08350.3 46.701 197 104 1 8 204 5 200 2.26e-58 203
Msa0856080 AT1G08350.2 51.220 287 138 2 215 500 304 589 1.76e-96 303
Msa0856080 AT1G08350.2 46.701 197 104 1 8 204 5 200 2.26e-58 203
Msa0856080 AT3G13772.1 38.790 281 171 1 220 500 362 641 6.40e-68 230
Msa0856080 AT1G10950.1 43.214 280 158 1 221 500 311 589 8.84e-67 226
Msa0856080 AT1G10950.1 35.484 186 112 4 29 213 27 205 5.05e-33 132
Msa0856080 AT1G55130.1 38.434 281 172 1 220 500 358 637 8.09e-65 221
Msa0856080 AT1G08350.4 44.770 239 121 2 215 452 304 532 9.88e-64 216
Msa0856080 AT1G08350.4 46.701 197 104 1 8 204 5 200 3.61e-58 201
Msa0856080 AT5G10840.1 36.806 288 180 2 214 500 362 648 9.27e-62 213
Msa0856080 AT5G10840.1 21.918 219 148 4 3 206 14 224 3.51e-12 69.3
Msa0856080 AT5G25100.1 35.664 286 183 1 215 500 360 644 1.72e-60 210
Msa0856080 AT5G25100.1 21.622 222 149 4 2 206 7 220 5.90e-12 68.6
Msa0856080 AT5G25100.2 35.664 286 183 1 215 500 367 651 1.91e-60 210
Msa0856080 AT2G24170.1 36.014 286 182 1 215 500 353 637 1.83e-56 199
Msa0856080 AT2G24170.1 24.242 165 104 3 56 206 56 213 1.36e-11 67.4
Msa0856080 AT5G35160.1 32.646 291 185 5 216 500 345 630 4.01e-39 150
Msa0856080 AT5G35160.2 32.646 291 185 5 216 500 373 658 5.46e-39 150
Msa0856080 AT5G35160.3 32.646 291 185 5 216 500 373 658 5.46e-39 150
Msa0856080 AT5G35160.4 32.646 291 185 5 216 500 373 658 5.46e-39 150
Msa0856080 AT4G12650.1 32.042 284 183 5 222 500 374 652 3.74e-37 145
Msa0856080 AT2G24170.2 24.242 165 104 3 56 206 56 213 7.01e-11 64.7

Find 102 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTAACCTCACCTTTAT+TGG 0.159809 5_4:+50436830 Msa0856080:CDS
TTCCTTTGTGGTGGATCAAC+TGG 0.175262 5_4:+50437644 Msa0856080:CDS
ATTAAGCAGTGATAGAAATT+TGG 0.227532 5_4:-50437980 None:intergenic
ACTATGATGACTTGCCAATT+TGG 0.269300 5_4:+50435279 Msa0856080:CDS
ACCTCACCTTTATTGGTATT+GGG 0.275560 5_4:+50436837 Msa0856080:CDS
TCAACTGGGTTGTTCATATA+TGG 0.277084 5_4:+50437659 Msa0856080:CDS
AACCTCACCTTTATTGGTAT+TGG 0.284277 5_4:+50436836 Msa0856080:CDS
TGCATTTCAGGTGAAAATTT+TGG 0.287409 5_4:+50436677 Msa0856080:intron
TTGGTATTGGGTGGGATTGC+TGG 0.299301 5_4:+50436849 Msa0856080:CDS
CTATGATGACTTGCCAATTT+GGG 0.300228 5_4:+50435280 Msa0856080:CDS
ATCTTTATGCTTGCTCTAGT+TGG 0.316172 5_4:+50436177 Msa0856080:CDS
GTAGTAGAGTTCAATGAAAA+TGG 0.321529 5_4:-50437000 None:intergenic
GATATTAGGTCTTTCCTTTG+TGG 0.336277 5_4:+50437632 Msa0856080:intron
AATGAACAAAATGCTGTATA+TGG 0.340162 5_4:-50437057 None:intergenic
CCCTTCAATCATGTAATAGA+AGG 0.351238 5_4:-50436292 None:intergenic
TTACGGTACCAAGGTAGTTT+AGG 0.351664 5_4:-50436933 None:intergenic
AGCATCACATTCATAGCTTC+AGG 0.355880 5_4:+50438081 Msa0856080:three_prime_UTR
CTTCCAAGGAAACCCCAAAT+TGG 0.359340 5_4:-50435293 None:intergenic
TATGGTTTCTTTCTTATGCT+TGG 0.371120 5_4:+50437770 Msa0856080:CDS
TAGTGCTGCAGTGGAGTTAT+AGG 0.383154 5_4:-50436769 None:intergenic
ATCAAGAATTCAAGTTTGTA+AGG 0.385654 5_4:-50435158 None:intergenic
ATCCCACCCAATACCAATAA+AGG 0.387694 5_4:-50436843 None:intergenic
CAGATATTCCATTTGAGAAA+AGG 0.390734 5_4:+50435513 Msa0856080:CDS
TTGCCAATTTGGGGTTTCCT+TGG 0.391409 5_4:+50435290 Msa0856080:CDS
ATTTCACATATTCTGTCAAA+TGG 0.396091 5_4:+50435483 Msa0856080:CDS
CCCACCTTGTTTGCATAAAA+CGG 0.409711 5_4:-50433914 None:intergenic
AAACTAACCTGGCGAACAAA+AGG 0.410391 5_4:-50434971 None:intergenic
GGAAAAGTCAACGACATGTT+TGG 0.412145 5_4:+50433799 Msa0856080:CDS
GAAGGAAGCTGCAGAATAAC+CGG 0.424677 5_4:-50436274 None:intergenic
TCCACTGCAGCACTACCCTT+TGG 0.427646 5_4:+50436777 Msa0856080:CDS
AACAAAGCTCCCCTGTTGTA+TGG 0.432106 5_4:-50436210 None:intergenic
GCATTAACGTCCGGCATTGC+CGG 0.432563 5_4:+50436255 Msa0856080:CDS
TCCTTCTATTACATGATTGA+AGG 0.433770 5_4:+50436291 Msa0856080:CDS
CAGCAAAATCTCATTGCAAA+TGG 0.434387 5_4:+50437919 Msa0856080:three_prime_UTR
GGGAGCTTTGTTTACTGCAC+TGG 0.435481 5_4:+50436221 Msa0856080:CDS
CCGTAAAACTCTTCCTCAAA+TGG 0.437640 5_4:+50436950 Msa0856080:CDS
TCTGAGCTATTCACACTTGA+GGG 0.440042 5_4:-50437843 None:intergenic
TTTCTTATGCTTGGAACTGT+GGG 0.441101 5_4:+50437779 Msa0856080:CDS
GTCAAGTCCACAACAGCATT+CGG 0.447696 5_4:-50435437 None:intergenic
AATCTCCCTCGGATACTTGT+TGG 0.451259 5_4:-50436910 None:intergenic
CACCTTTATTGGTATTGGGT+GGG 0.453576 5_4:+50436841 Msa0856080:CDS
CATCAGTTTCAAATCTTCCA+AGG 0.455164 5_4:-50435307 None:intergenic
CTTTCTTATGCTTGGAACTG+TGG 0.458480 5_4:+50437778 Msa0856080:CDS
GGTTTACTGAAGAGTAGTAT+AGG 0.458814 5_4:+50437940 Msa0856080:three_prime_UTR
GAAGAAAAGAAAGAAGATCT+TGG 0.467281 5_4:+50435101 Msa0856080:CDS
ATTAGGTCTTTCCTTTGTGG+TGG 0.477997 5_4:+50437635 Msa0856080:intron
ATCTAACCTGGGATTATGAA+AGG 0.482130 5_4:-50433939 None:intergenic
TCCTTTGTGGTGGATCAACT+GGG 0.485374 5_4:+50437645 Msa0856080:CDS
TACATGGCTTGCATTTGCTA+TGG 0.488624 5_4:+50437752 Msa0856080:CDS
TGCAGAATAACCGGCAATGC+CGG 0.490602 5_4:-50436265 None:intergenic
TTTATTGAATGCAGAAAATG+TGG 0.491207 5_4:+50435079 Msa0856080:intron
ACTACATATTTGCCAGTGTG+TGG 0.492038 5_4:+50437018 Msa0856080:CDS
CATGCAAGATCAGATATGTC+TGG 0.493757 5_4:+50437701 Msa0856080:CDS
AACTCTTCCTCAAATGGCTA+TGG 0.495729 5_4:+50436956 Msa0856080:CDS
TTTATTTGAAATTATAGAAG+AGG 0.496168 5_4:+50438054 Msa0856080:three_prime_UTR
TTAACTGGTAGTCTATTCTC+TGG 0.501357 5_4:+50436702 Msa0856080:CDS
CTACATATTTGCCAGTGTGT+GGG 0.507683 5_4:+50437019 Msa0856080:CDS
CTTCCTCAAATGGCTATGGC+TGG 0.509056 5_4:+50436960 Msa0856080:CDS
TCAGATCATCGTTATAAAGA+AGG 0.510924 5_4:+50433881 Msa0856080:CDS
AATCCAGCCATAGCCATTTG+AGG 0.511166 5_4:-50436963 None:intergenic
AGAAGATAGAGAGGTAAATG+TGG 0.520334 5_4:+50435460 Msa0856080:CDS
TGGGACCCTTTCATAATCCC+AGG 0.520558 5_4:+50433933 Msa0856080:CDS
CCTTCTATTACATGATTGAA+GGG 0.526700 5_4:+50436292 Msa0856080:CDS
GTCATATACGCATTAACGTC+CGG 0.529722 5_4:+50436246 Msa0856080:CDS
TTCTGAGCTATTCACACTTG+AGG 0.535196 5_4:-50437844 None:intergenic
TCACCTTTATTGGTATTGGG+TGG 0.535989 5_4:+50436840 Msa0856080:CDS
AATAACCACAATTGTTCCAA+AGG 0.538698 5_4:-50436793 None:intergenic
AAGGTGCTTGAAACTCTGAT+TGG 0.544875 5_4:-50436881 None:intergenic
ATAGCTCAGAAGAAGCTCAC+TGG 0.546157 5_4:+50437856 Msa0856080:exon
TCTAACCTGGGATTATGAAA+GGG 0.548279 5_4:-50433938 None:intergenic
AACTAACCTGGCGAACAAAA+GGG 0.550195 5_4:-50434970 None:intergenic
TACATATTTGCCAGTGTGTG+GGG 0.552002 5_4:+50437020 Msa0856080:CDS
TCAATGAAAATGGCACTGAA+TGG 0.553149 5_4:-50436990 None:intergenic
AAAGATGCTGACAAGAAAAG+AGG 0.554105 5_4:+50435208 Msa0856080:CDS
ATACTTTCAACTTGCTGCTG+AGG 0.554818 5_4:+50437130 Msa0856080:CDS
CTGAGGATCATGAATGGTGG+TGG 0.559393 5_4:+50437147 Msa0856080:CDS
ACAGAGTAAAACAAAGCGCC+TGG 0.561428 5_4:-50437885 None:intergenic
TCCAAAGGGTAGTGCTGCAG+TGG 0.561479 5_4:-50436778 None:intergenic
ACTACCCTTTGGAACAATTG+TGG 0.569004 5_4:+50436788 Msa0856080:CDS
ACTTGAGGGAACGGTATATG+TGG 0.569759 5_4:-50437829 None:intergenic
TATGATGACTTGCCAATTTG+GGG 0.574034 5_4:+50435281 Msa0856080:CDS
AAATGATCCGAATGCTGTTG+TGG 0.575333 5_4:+50435430 Msa0856080:CDS
ATAACCACAATTGTTCCAAA+GGG 0.579246 5_4:-50436792 None:intergenic
GGATACTTGTTGGTTCGACA+AGG 0.582998 5_4:-50436900 None:intergenic
AAAAGATGTTGACACAAATG+AGG 0.586558 5_4:+50435331 Msa0856080:CDS
GACATTCAGCTTTCTTAACA+CGG 0.594648 5_4:+50436737 Msa0856080:CDS
GGGAGATTCCTAAACTACCT+TGG 0.601031 5_4:+50436925 Msa0856080:CDS
TTGCTGCTGAGGATCATGAA+TGG 0.608218 5_4:+50437141 Msa0856080:CDS
CAGACATATCTGATCTTGCA+TGG 0.613786 5_4:-50437700 None:intergenic
GCTATTCACACTTGAGGGAA+CGG 0.614276 5_4:-50437838 None:intergenic
CTGCTGAGGATCATGAATGG+TGG 0.620026 5_4:+50437144 Msa0856080:CDS
GTCGAACCAACAAGTATCCG+AGG 0.624487 5_4:+50436904 Msa0856080:CDS
AATCTGATGACCCCACACAC+TGG 0.627045 5_4:-50437030 None:intergenic
AGGATCATGAATGGTGGTGG+AGG 0.635786 5_4:+50437150 Msa0856080:CDS
GGACTTGACAGAAGATAGAG+AGG 0.642544 5_4:+50435451 Msa0856080:CDS
TTATACAGCAGAAACAACAT+AGG 0.656465 5_4:-50433838 None:intergenic
GAAGCTCACTGGAATAAACC+AGG 0.661450 5_4:+50437867 Msa0856080:three_prime_UTR
GGTAGTTTAGGAATCTCCCT+CGG 0.664868 5_4:-50436921 None:intergenic
ACCCAATACCAATAAAGGTG+AGG 0.665590 5_4:-50436838 None:intergenic
TCGAACCAACAAGTATCCGA+GGG 0.672144 5_4:+50436905 Msa0856080:CDS
ACCCAGTTGATCCACCACAA+AGG 0.682810 5_4:-50437646 None:intergenic
GAAACAACATAGGATCACAA+TGG 0.705943 5_4:-50433828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATCAAAATATATTTTAAAA+GGG - chr5_4:50433991-50434010 None:intergenic 10.0%
!!! AGATCAAAATATATTTTAAA+AGG - chr5_4:50433992-50434011 None:intergenic 10.0%
!!! TTTTTTTCAAAAGTATAAAT+TGG - chr5_4:50434025-50434044 None:intergenic 10.0%
!! TGAAAAAAATATGAAAAAAT+TGG + chr5_4:50434036-50434055 Msa0856080:intron 10.0%
!! GAAAAAAATATGAAAAAATT+GGG + chr5_4:50434037-50434056 Msa0856080:intron 10.0%
!!! ATTAAATAGTATAATTTTTG+TGG + chr5_4:50434633-50434652 Msa0856080:intron 10.0%
!! AAATAAAAATAAAAGTTGTT+AGG - chr5_4:50438041-50438060 None:intergenic 10.0%
!! ATGGTATTCATATAATATAA+AGG + chr5_4:50436085-50436104 Msa0856080:intron 15.0%
!! TGAAAAAAATATCAATGTTA+TGG + chr5_4:50437237-50437256 Msa0856080:intron 15.0%
!! GAAAAAAATATCAATGTTAT+GGG + chr5_4:50437238-50437257 Msa0856080:intron 15.0%
!! AAATGACAAGTTATAAAATA+TGG - chr5_4:50437604-50437623 None:intergenic 15.0%
!!! TTTATTTGAAATTATAGAAG+AGG + chr5_4:50438054-50438073 Msa0856080:three_prime_UTR 15.0%
!!! TTTTCAAAAGTATAAATTGG+AGG - chr5_4:50434022-50434041 None:intergenic 20.0%
!!! AGACAGTAATAGAAAATTTT+GGG - chr5_4:50435021-50435040 None:intergenic 20.0%
!!! AAGACAGTAATAGAAAATTT+TGG - chr5_4:50435022-50435041 None:intergenic 20.0%
!!! CAATAAATTTTGGAACTATA+AGG - chr5_4:50435066-50435085 None:intergenic 20.0%
!!! TTTCTGCATTCAATAAATTT+TGG - chr5_4:50435076-50435095 None:intergenic 20.0%
!! AGTTAATAATAGAAAACCAA+TGG - chr5_4:50435586-50435605 None:intergenic 20.0%
!! ATTTATTTATCTCAGTAGTA+TGG + chr5_4:50435696-50435715 Msa0856080:intron 20.0%
!! ACATAACAAAATATTACGAT+AGG + chr5_4:50435897-50435916 Msa0856080:intron 20.0%
!!! TTGTGGTTATTTTCTTAATA+TGG + chr5_4:50436805-50436824 Msa0856080:CDS 20.0%
!! TAGTTTATTCATCAGAATTT+AGG + chr5_4:50437211-50437230 Msa0856080:intron 20.0%
!! TTGAAAACTATTATTAGATC+AGG - chr5_4:50437315-50437334 None:intergenic 20.0%
!!! GTCATTTTCTTAAAAATATG+TGG - chr5_4:50437528-50437547 None:intergenic 20.0%
!!! TCATTTTTCTACATGATATT+AGG + chr5_4:50437618-50437637 Msa0856080:intron 20.0%
! AAGCATTAAAAATCTAACCT+GGG - chr5_4:50433953-50433972 None:intergenic 25.0%
!! AAAGCATTAAAAATCTAACC+TGG - chr5_4:50433954-50433973 None:intergenic 25.0%
!! GTAATGGAATGAAATCTTAA+TGG + chr5_4:50434094-50434113 Msa0856080:intron 25.0%
! TTAGTGCTTCAATAAAATCA+TGG + chr5_4:50434189-50434208 Msa0856080:intron 25.0%
! TTTATTGTCAAGATAAGCTA+TGG - chr5_4:50434481-50434500 None:intergenic 25.0%
! AATGAACACACTTCAATATA+AGG - chr5_4:50434573-50434592 None:intergenic 25.0%
! TCAGTTAAAGATGAATTGTT+CGG - chr5_4:50434762-50434781 None:intergenic 25.0%
! ATCAAGAATTTCTTCCTAAA+TGG + chr5_4:50434874-50434893 Msa0856080:intron 25.0%
! TATTAACAAAGTAGCCATTT+AGG - chr5_4:50434891-50434910 None:intergenic 25.0%
! TTTATTGAATGCAGAAAATG+TGG + chr5_4:50435079-50435098 Msa0856080:intron 25.0%
!! ATCAAGAATTCAAGTTTGTA+AGG - chr5_4:50435161-50435180 None:intergenic 25.0%
! ATTCCTAAAAAGATAAACTG+TGG - chr5_4:50435357-50435376 None:intergenic 25.0%
! ATTTCACATATTCTGTCAAA+TGG + chr5_4:50435483-50435502 Msa0856080:CDS 25.0%
! ATGAAGATTACACTGAAAAA+TGG - chr5_4:50436159-50436178 None:intergenic 25.0%
! GAACCTAAATAAGTAGTAAA+AGG - chr5_4:50436381-50436400 None:intergenic 25.0%
! TTAAAGGAAAAACAAAGGAA+AGG - chr5_4:50436591-50436610 None:intergenic 25.0%
! ATTACTTTCAATCGTGTTAA+AGG - chr5_4:50436607-50436626 None:intergenic 25.0%
! AATGAACAAAATGCTGTATA+TGG - chr5_4:50437060-50437079 None:intergenic 25.0%
!! TCTAAAAAGTAGAGGTATAA+GGG + chr5_4:50437465-50437484 Msa0856080:intron 25.0%
!! ATGCAAACTTCTTTCTTTTT+CGG + chr5_4:50437728-50437747 Msa0856080:CDS 25.0%
! ATTAAGCAGTGATAGAAATT+TGG - chr5_4:50437983-50438002 None:intergenic 25.0%
TTATACAGCAGAAACAACAT+AGG - chr5_4:50433841-50433860 None:intergenic 30.0%
TCAGATCATCGTTATAAAGA+AGG + chr5_4:50433881-50433900 Msa0856080:CDS 30.0%
TTCATTCCATTACAGAATTC+TGG - chr5_4:50434087-50434106 None:intergenic 30.0%
ATGGAATGAAATCTTAATGG+TGG + chr5_4:50434097-50434116 Msa0856080:intron 30.0%
CAAATTACGACAGGTAAATT+TGG - chr5_4:50434231-50434250 None:intergenic 30.0%
CAAATTTACCTGTCGTAATT+TGG + chr5_4:50434229-50434248 Msa0856080:intron 30.0%
!! TTGACAATAAAGTATTGCTC+TGG + chr5_4:50434490-50434509 Msa0856080:intron 30.0%
!! CTTTTATCTTTGCCATTTGA+TGG + chr5_4:50434528-50434547 Msa0856080:intron 30.0%
CAGTTAAAGATGAATTGTTC+GGG - chr5_4:50434761-50434780 None:intergenic 30.0%
! CTTGGTTGGTTAAATCTAAA+TGG + chr5_4:50434809-50434828 Msa0856080:intron 30.0%
GAAGAAAAGAAAGAAGATCT+TGG + chr5_4:50435101-50435120 Msa0856080:CDS 30.0%
AAAAGATGTTGACACAAATG+AGG + chr5_4:50435331-50435350 Msa0856080:CDS 30.0%
CAGATATTCCATTTGAGAAA+AGG + chr5_4:50435513-50435532 Msa0856080:CDS 30.0%
TATTCCATTTGAGAAAAGGT+TGG + chr5_4:50435517-50435536 Msa0856080:intron 30.0%
! TTAGACCATTTACTAGTTTG+TGG + chr5_4:50435860-50435879 Msa0856080:intron 30.0%
AAGTTCCACAAACTAGTAAA+TGG - chr5_4:50435868-50435887 None:intergenic 30.0%
! TTACCTTCTCAAAGTACTAA+TGG + chr5_4:50436066-50436085 Msa0856080:intron 30.0%
! ATACCATTAGTACTTTGAGA+AGG - chr5_4:50436072-50436091 None:intergenic 30.0%
! TGTTTTCTATCCATACAACA+GGG + chr5_4:50436200-50436219 Msa0856080:CDS 30.0%
TCCTTCTATTACATGATTGA+AGG + chr5_4:50436291-50436310 Msa0856080:CDS 30.0%
CCTTCTATTACATGATTGAA+GGG + chr5_4:50436292-50436311 Msa0856080:CDS 30.0%
ACATGATTGAAGGGAAAAAT+TGG + chr5_4:50436301-50436320 Msa0856080:CDS 30.0%
CATGATTGAAGGGAAAAATT+GGG + chr5_4:50436302-50436321 Msa0856080:CDS 30.0%
CTAAATAAGTAGTAAAAGGC+AGG - chr5_4:50436377-50436396 None:intergenic 30.0%
! CTGCCTTTTACTACTTATTT+AGG + chr5_4:50436375-50436394 Msa0856080:intron 30.0%
CTAAGTCATTGGATAAAGAT+CGG + chr5_4:50436457-50436476 Msa0856080:intron 30.0%
TCGTGTTAAAGGAAAAACAA+AGG - chr5_4:50436596-50436615 None:intergenic 30.0%
GGATTACACTTATCAAGTAT+TGG + chr5_4:50436649-50436668 Msa0856080:intron 30.0%
!! TGCATTTCAGGTGAAAATTT+TGG + chr5_4:50436677-50436696 Msa0856080:intron 30.0%
!!! GTGAAAATTTTGGTGTTAAC+TGG + chr5_4:50436687-50436706 Msa0856080:CDS 30.0%
AAGCTGAATGTCAAAAACAA+TGG - chr5_4:50436729-50436748 None:intergenic 30.0%
ATAACCACAATTGTTCCAAA+GGG - chr5_4:50436795-50436814 None:intergenic 30.0%
AATAACCACAATTGTTCCAA+AGG - chr5_4:50436796-50436815 None:intergenic 30.0%
GTAGTAGAGTTCAATGAAAA+TGG - chr5_4:50437003-50437022 None:intergenic 30.0%
AAAACTATTTATGCATGCCA+AGG - chr5_4:50437291-50437310 None:intergenic 30.0%
GAGAGATTAGATGAATTAAG+AGG - chr5_4:50437417-50437436 None:intergenic 30.0%
TCATCTAATCTCTCAATTGT+TGG + chr5_4:50437423-50437442 Msa0856080:intron 30.0%
CAATTGTTGGATGAATTTAG+TGG + chr5_4:50437436-50437455 Msa0856080:intron 30.0%
!!! CTTATACCTCTACTTTTTAG+AGG - chr5_4:50437466-50437485 None:intergenic 30.0%
! CTCTAAAAAGTAGAGGTATA+AGG + chr5_4:50437464-50437483 Msa0856080:intron 30.0%
! CTAAAAAGTAGAGGTATAAG+GGG + chr5_4:50437466-50437485 Msa0856080:intron 30.0%
TATGGTTTCTTTCTTATGCT+TGG + chr5_4:50437770-50437789 Msa0856080:CDS 30.0%
GAAACAACATAGGATCACAA+TGG - chr5_4:50433831-50433850 None:intergenic 35.0%
! TGTACCGTTTTATGCAAACA+AGG + chr5_4:50433910-50433929 Msa0856080:CDS 35.0%
TCTAACCTGGGATTATGAAA+GGG - chr5_4:50433941-50433960 None:intergenic 35.0%
ATCTAACCTGGGATTATGAA+AGG - chr5_4:50433942-50433961 None:intergenic 35.0%
!!! AATTGGGTTGTGTCATTTTG+AGG + chr5_4:50434053-50434072 Msa0856080:intron 35.0%
ACCATTCCAGAATTCTGTAA+TGG + chr5_4:50434078-50434097 Msa0856080:intron 35.0%
! TCCATTACAGAATTCTGGAA+TGG - chr5_4:50434082-50434101 None:intergenic 35.0%
!! AATCTTAATGGTGGATGAAG+AGG + chr5_4:50434106-50434125 Msa0856080:intron 35.0%
ACACATAACCAAATTACGAC+AGG - chr5_4:50434240-50434259 None:intergenic 35.0%
! TATCTTTGCCATTTGATGGT+AGG + chr5_4:50434532-50434551 Msa0856080:intron 35.0%
! ATCTTCACCCGAACAATTTT+TGG - chr5_4:50434723-50434742 None:intergenic 35.0%
AGCACTTGAGTTTAATCACT+TGG + chr5_4:50434791-50434810 Msa0856080:intron 35.0%
CTTGAGTTTAATCACTTGGT+TGG + chr5_4:50434795-50434814 Msa0856080:intron 35.0%
GTGGCAGAAAAAAAATGTCA+AGG - chr5_4:50434923-50434942 None:intergenic 35.0%
AATATCTGTATGTCTCACTG+TGG - chr5_4:50434942-50434961 None:intergenic 35.0%
TGAATACCATCAAACTAACC+TGG - chr5_4:50434985-50435004 None:intergenic 35.0%
!!! GATCTTGGTGAAGTTTTGAA+TGG + chr5_4:50435116-50435135 Msa0856080:CDS 35.0%
! CTTTTCTTGTCAGCATCTTT+TGG - chr5_4:50435208-50435227 None:intergenic 35.0%
AAAGATGCTGACAAGAAAAG+AGG + chr5_4:50435208-50435227 Msa0856080:CDS 35.0%
!!! ATTCAGACATGCTGTTTTGA+AGG + chr5_4:50435238-50435257 Msa0856080:CDS 35.0%
! ACTATGATGACTTGCCAATT+TGG + chr5_4:50435279-50435298 Msa0856080:CDS 35.0%
! CTATGATGACTTGCCAATTT+GGG + chr5_4:50435280-50435299 Msa0856080:CDS 35.0%
! TATGATGACTTGCCAATTTG+GGG + chr5_4:50435281-50435300 Msa0856080:CDS 35.0%
CATCAGTTTCAAATCTTCCA+AGG - chr5_4:50435310-50435329 None:intergenic 35.0%
! AGGCCACAGTTTATCTTTTT+AGG + chr5_4:50435351-50435370 Msa0856080:CDS 35.0%
AGAAGATAGAGAGGTAAATG+TGG + chr5_4:50435460-50435479 Msa0856080:CDS 35.0%
! TTCTCCAACCTTTTCTCAAA+TGG - chr5_4:50435524-50435543 None:intergenic 35.0%
! GAGCACATTTGATCGTATTT+TGG - chr5_4:50435766-50435785 None:intergenic 35.0%
AAATAGCTCGAAATTGCAGT+AGG - chr5_4:50435832-50435851 None:intergenic 35.0%
GCGAACAAAGACTTAAATCT+TGG - chr5_4:50436001-50436020 None:intergenic 35.0%
ATCTTTATGCTTGCTCTAGT+TGG + chr5_4:50436177-50436196 Msa0856080:CDS 35.0%
! GTGTTTTCTATCCATACAAC+AGG + chr5_4:50436199-50436218 Msa0856080:CDS 35.0%
! GTTTTCTATCCATACAACAG+GGG + chr5_4:50436201-50436220 Msa0856080:CDS 35.0%
CCCTTCAATCATGTAATAGA+AGG - chr5_4:50436295-50436314 None:intergenic 35.0%
! GTTTATGCTGTCTAAGATGA+TGG - chr5_4:50436334-50436353 None:intergenic 35.0%
! TCATTGATTGTTGTGAATCC+AGG - chr5_4:50436410-50436429 None:intergenic 35.0%
AATGATTTATGCAGTCACTG+CGG + chr5_4:50436425-50436444 Msa0856080:intron 35.0%
! GGTTAGTTGATCTAAGTCAT+TGG + chr5_4:50436446-50436465 Msa0856080:intron 35.0%
! GTATTGGTATGTTGCATTTC+AGG + chr5_4:50436665-50436684 Msa0856080:intron 35.0%
TTAACTGGTAGTCTATTCTC+TGG + chr5_4:50436702-50436721 Msa0856080:CDS 35.0%
GACATTCAGCTTTCTTAACA+CGG + chr5_4:50436737-50436756 Msa0856080:CDS 35.0%
ACTTGTAACCTCACCTTTAT+TGG + chr5_4:50436830-50436849 Msa0856080:CDS 35.0%
AACCTCACCTTTATTGGTAT+TGG + chr5_4:50436836-50436855 Msa0856080:CDS 35.0%
ACCTCACCTTTATTGGTATT+GGG + chr5_4:50436837-50436856 Msa0856080:CDS 35.0%
! CCATTTGAGGAAGAGTTTTA+CGG - chr5_4:50436953-50436972 None:intergenic 35.0%
! TCAATGAAAATGGCACTGAA+TGG - chr5_4:50436993-50437012 None:intergenic 35.0%
!! CTTTTGATTGTCACTGCTTT+TGG + chr5_4:50437092-50437111 Msa0856080:CDS 35.0%
!!! TACCTCTACTTTTTAGAGGT+CGG - chr5_4:50437462-50437481 None:intergenic 35.0%
GATATTAGGTCTTTCCTTTG+TGG + chr5_4:50437632-50437651 Msa0856080:intron 35.0%
TCAACTGGGTTGTTCATATA+TGG + chr5_4:50437659-50437678 Msa0856080:CDS 35.0%
!!! TTCTTTCTTTTTCGGCTACA+TGG + chr5_4:50437736-50437755 Msa0856080:CDS 35.0%
TTTCTTATGCTTGGAACTGT+GGG + chr5_4:50437779-50437798 Msa0856080:CDS 35.0%
!! GCAATGAGATTTTGCTGTAT+TGG - chr5_4:50437916-50437935 None:intergenic 35.0%
CAGCAAAATCTCATTGCAAA+TGG + chr5_4:50437919-50437938 Msa0856080:three_prime_UTR 35.0%
GGTTTACTGAAGAGTAGTAT+AGG + chr5_4:50437940-50437959 Msa0856080:three_prime_UTR 35.0%
GGAAAAGTCAACGACATGTT+TGG + chr5_4:50433799-50433818 Msa0856080:CDS 40.0%
! ACCGTTTTATGCAAACAAGG+TGG + chr5_4:50433913-50433932 Msa0856080:CDS 40.0%
! CCCACCTTGTTTGCATAAAA+CGG - chr5_4:50433917-50433936 None:intergenic 40.0%
! CCGTTTTATGCAAACAAGGT+GGG + chr5_4:50433914-50433933 Msa0856080:CDS 40.0%
CTCATACAAAAAGTGACACG+TGG - chr5_4:50434448-50434467 None:intergenic 40.0%
TTGCTCTGGTGTATCTCATT+TGG + chr5_4:50434504-50434523 Msa0856080:intron 40.0%
!! TGAAAGTGCCTACCATCAAA+TGG - chr5_4:50434543-50434562 None:intergenic 40.0%
TGGCCAAACTCTAGATTATG+AGG - chr5_4:50434689-50434708 None:intergenic 40.0%
TAGAGTTTGGCCAAGAGATA+CGG + chr5_4:50434696-50434715 Msa0856080:intron 40.0%
!!! AATTTTTGGCCCGTATCTCT+TGG - chr5_4:50434709-50434728 None:intergenic 40.0%
GATACGGGCCAAAAATTGTT+CGG + chr5_4:50434712-50434731 Msa0856080:intron 40.0%
ATACGGGCCAAAAATTGTTC+GGG + chr5_4:50434713-50434732 Msa0856080:intron 40.0%
AACTAACCTGGCGAACAAAA+GGG - chr5_4:50434973-50434992 None:intergenic 40.0%
AAACTAACCTGGCGAACAAA+AGG - chr5_4:50434974-50434993 None:intergenic 40.0%
! ATCTTTTGGCAAATGCTCTC+AGG - chr5_4:50435194-50435213 None:intergenic 40.0%
AAATGATCCGAATGCTGTTG+TGG + chr5_4:50435430-50435449 Msa0856080:CDS 40.0%
CACATCACTTGGAAATCCAT+TGG + chr5_4:50435567-50435586 Msa0856080:intron 40.0%
GTTACTGTTCTTCTCTTGAC+CGG + chr5_4:50435611-50435630 Msa0856080:intron 40.0%
ACGATCAAATGTGCTCAATG+TGG + chr5_4:50435770-50435789 Msa0856080:intron 40.0%
CAGTAGGAGCTGCAATATAA+AGG - chr5_4:50435816-50435835 None:intergenic 40.0%
TAGGTTTACACCAGATGAAG+AGG + chr5_4:50435916-50435935 Msa0856080:intron 40.0%
! ACTGGATGGAAGTATATCCA+TGG + chr5_4:50435959-50435978 Msa0856080:intron 40.0%
GATATCTGAACACATCACCA+TGG - chr5_4:50435979-50435998 None:intergenic 40.0%
! GCTCTTTTGTGACTAATGCT+TGG + chr5_4:50436130-50436149 Msa0856080:intron 40.0%
GTCATATACGCATTAACGTC+CGG + chr5_4:50436246-50436265 Msa0856080:CDS 40.0%
!! AGTAAAAGGCAGGTATTGAG+TGG - chr5_4:50436367-50436386 None:intergenic 40.0%
! TTATTTAGGTTCCTCGAACC+TGG + chr5_4:50436389-50436408 Msa0856080:intron 40.0%
CACGATTGAAAGTAATACCG+TGG + chr5_4:50436611-50436630 Msa0856080:intron 40.0%
!! ACTACCCTTTGGAACAATTG+TGG + chr5_4:50436788-50436807 Msa0856080:CDS 40.0%
ACCCAATACCAATAAAGGTG+AGG - chr5_4:50436841-50436860 None:intergenic 40.0%
! TCACCTTTATTGGTATTGGG+TGG + chr5_4:50436840-50436859 Msa0856080:CDS 40.0%
! CACCTTTATTGGTATTGGGT+GGG + chr5_4:50436841-50436860 Msa0856080:CDS 40.0%
ATCCCACCCAATACCAATAA+AGG - chr5_4:50436846-50436865 None:intergenic 40.0%
! AAGGTGCTTGAAACTCTGAT+TGG - chr5_4:50436884-50436903 None:intergenic 40.0%
TTACGGTACCAAGGTAGTTT+AGG - chr5_4:50436936-50436955 None:intergenic 40.0%
CCGTAAAACTCTTCCTCAAA+TGG + chr5_4:50436950-50436969 Msa0856080:CDS 40.0%
AACTCTTCCTCAAATGGCTA+TGG + chr5_4:50436956-50436975 Msa0856080:CDS 40.0%
ACTACATATTTGCCAGTGTG+TGG + chr5_4:50437018-50437037 Msa0856080:CDS 40.0%
CTACATATTTGCCAGTGTGT+GGG + chr5_4:50437019-50437038 Msa0856080:CDS 40.0%
TACATATTTGCCAGTGTGTG+GGG + chr5_4:50437020-50437039 Msa0856080:CDS 40.0%
!!! TGTCACTGCTTTTGGTAATG+TGG + chr5_4:50437100-50437119 Msa0856080:CDS 40.0%
!! ATACTTTCAACTTGCTGCTG+AGG + chr5_4:50437130-50437149 Msa0856080:CDS 40.0%
GGTGATTGTGTTTGAATGGA+AGG - chr5_4:50437270-50437289 None:intergenic 40.0%
CCAAGGTGATTGTGTTTGAA+TGG - chr5_4:50437274-50437293 None:intergenic 40.0%
CCATTCAAACACAATCACCT+TGG + chr5_4:50437271-50437290 Msa0856080:intron 40.0%
! CACGTGATGCTACAAACTTT+TGG + chr5_4:50437340-50437359 Msa0856080:intron 40.0%
! AAACTTTTGGCCATGCTAGA+TGG + chr5_4:50437353-50437372 Msa0856080:intron 40.0%
ATTAGGTCTTTCCTTTGTGG+TGG + chr5_4:50437635-50437654 Msa0856080:intron 40.0%
CAGACATATCTGATCTTGCA+TGG - chr5_4:50437703-50437722 None:intergenic 40.0%
CATGCAAGATCAGATATGTC+TGG + chr5_4:50437701-50437720 Msa0856080:CDS 40.0%
! TACATGGCTTGCATTTGCTA+TGG + chr5_4:50437752-50437771 Msa0856080:CDS 40.0%
CTTTCTTATGCTTGGAACTG+TGG + chr5_4:50437778-50437797 Msa0856080:CDS 40.0%
TCTGAGCTATTCACACTTGA+GGG - chr5_4:50437846-50437865 None:intergenic 40.0%
TTCTGAGCTATTCACACTTG+AGG - chr5_4:50437847-50437866 None:intergenic 40.0%
AGCATCACATTCATAGCTTC+AGG + chr5_4:50438081-50438100 Msa0856080:three_prime_UTR 40.0%
!! TGTAGCACTGACACTTCTGA+TGG + chr5_4:50434329-50434348 Msa0856080:intron 45.0%
! TATCAGTGTTGTGCTGGTGT+CGG - chr5_4:50434375-50434394 None:intergenic 45.0%
CACATGTATCAGTGTTGTGC+TGG - chr5_4:50434381-50434400 None:intergenic 45.0%
! GGGCCTCATAATCTAGAGTT+TGG + chr5_4:50434683-50434702 Msa0856080:intron 45.0%
AGAGTTTGGCCAAGAGATAC+GGG + chr5_4:50434697-50434716 Msa0856080:intron 45.0%
!! TGTTCGCCAGGTTAGTTTGA+TGG + chr5_4:50434976-50434995 Msa0856080:intron 45.0%
! TTGCCAATTTGGGGTTTCCT+TGG + chr5_4:50435290-50435309 Msa0856080:CDS 45.0%
CTTCCAAGGAAACCCCAAAT+TGG - chr5_4:50435296-50435315 None:intergenic 45.0%
GTCAAGTCCACAACAGCATT+CGG - chr5_4:50435440-50435459 None:intergenic 45.0%
GGACTTGACAGAAGATAGAG+AGG + chr5_4:50435451-50435470 Msa0856080:CDS 45.0%
ATCCTCACTCTCACATCACT+TGG + chr5_4:50435556-50435575 Msa0856080:intron 45.0%
TTCCAAGTGATGTGAGAGTG+AGG - chr5_4:50435561-50435580 None:intergenic 45.0%
GAGAATCATGGCAAGGAATC+CGG - chr5_4:50435633-50435652 None:intergenic 45.0%
AAGTACGCGCATGAGAATCA+TGG - chr5_4:50435645-50435664 None:intergenic 45.0%
TCATCAAGTGCCTCTTCATC+TGG - chr5_4:50435929-50435948 None:intergenic 45.0%
! CTTGATGACCAAGAAGAGAC+TGG + chr5_4:50435941-50435960 Msa0856080:intron 45.0%
ATGACCAAGAAGAGACTGGA+TGG + chr5_4:50435945-50435964 Msa0856080:intron 45.0%
ACTTCCATCCAGTCTCTTCT+TGG - chr5_4:50435952-50435971 None:intergenic 45.0%
AACAAAGCTCCCCTGTTGTA+TGG - chr5_4:50436213-50436232 None:intergenic 45.0%
GAAGGAAGCTGCAGAATAAC+CGG - chr5_4:50436277-50436296 None:intergenic 45.0%
TTGTTGTGAATCCAGGTTCG+AGG - chr5_4:50436403-50436422 None:intergenic 45.0%
CCACTCAGTTTCTCTTTCCA+CGG - chr5_4:50436631-50436650 None:intergenic 45.0%
TAGTGCTGCAGTGGAGTTAT+AGG - chr5_4:50436772-50436791 None:intergenic 45.0%
!! GGATACTTGTTGGTTCGACA+AGG - chr5_4:50436903-50436922 None:intergenic 45.0%
TCGAACCAACAAGTATCCGA+GGG + chr5_4:50436905-50436924 Msa0856080:CDS 45.0%
AATCTCCCTCGGATACTTGT+TGG - chr5_4:50436913-50436932 None:intergenic 45.0%
GGTAGTTTAGGAATCTCCCT+CGG - chr5_4:50436924-50436943 None:intergenic 45.0%
GGGAGATTCCTAAACTACCT+TGG + chr5_4:50436925-50436944 Msa0856080:CDS 45.0%
! GGAAGAGTTTTACGGTACCA+AGG - chr5_4:50436945-50436964 None:intergenic 45.0%
AATCCAGCCATAGCCATTTG+AGG - chr5_4:50436966-50436985 None:intergenic 45.0%
TTGCTGCTGAGGATCATGAA+TGG + chr5_4:50437141-50437160 Msa0856080:CDS 45.0%
GAATTAAGAGGACCGACCTT+TGG - chr5_4:50437405-50437424 None:intergenic 45.0%
!! TTCCTTTGTGGTGGATCAAC+TGG + chr5_4:50437644-50437663 Msa0856080:CDS 45.0%
!! TCCTTTGTGGTGGATCAACT+GGG + chr5_4:50437645-50437664 Msa0856080:CDS 45.0%
ACTTGAGGGAACGGTATATG+TGG - chr5_4:50437832-50437851 None:intergenic 45.0%
GCTATTCACACTTGAGGGAA+CGG - chr5_4:50437841-50437860 None:intergenic 45.0%
ATAGCTCAGAAGAAGCTCAC+TGG + chr5_4:50437856-50437875 Msa0856080:exon 45.0%
GAAGCTCACTGGAATAAACC+AGG + chr5_4:50437867-50437886 Msa0856080:three_prime_UTR 45.0%
! ACAGAGTAAAACAAAGCGCC+TGG - chr5_4:50437888-50437907 None:intergenic 45.0%
TGGGACCCTTTCATAATCCC+AGG + chr5_4:50433933-50433952 Msa0856080:CDS 50.0%
CCATTCCTCCGGAAATTGGA+GGG - chr5_4:50434665-50434684 None:intergenic 50.0%
CCTCCAATTTCCGGAGGAAT+GGG + chr5_4:50434663-50434682 Msa0856080:intron 50.0%
GATTATGAGGCCCATTCCTC+CGG - chr5_4:50434676-50434695 None:intergenic 50.0%
TCGGGTGAAGATTTGACCTC+AGG + chr5_4:50434731-50434750 Msa0856080:intron 50.0%
GAATTGTTCGGGAGAACCTG+AGG - chr5_4:50434750-50434769 None:intergenic 50.0%
! GATCTTCCCTTTTGTTCGCC+AGG + chr5_4:50434964-50434983 Msa0856080:CDS 50.0%
TCTTTGTTCGCAGCAGCACT+TGG + chr5_4:50436010-50436029 Msa0856080:intron 50.0%
!! GGGAGCTTTGTTTACTGCAC+TGG + chr5_4:50436221-50436240 Msa0856080:CDS 50.0%
TGCAGAATAACCGGCAATGC+CGG - chr5_4:50436268-50436287 None:intergenic 50.0%
CCGTGGAAAGAGAAACTGAG+TGG + chr5_4:50436628-50436647 Msa0856080:intron 50.0%
! TTGGTATTGGGTGGGATTGC+TGG + chr5_4:50436849-50436868 Msa0856080:CDS 50.0%
GTCGAACCAACAAGTATCCG+AGG + chr5_4:50436904-50436923 Msa0856080:CDS 50.0%
CTTCCTCAAATGGCTATGGC+TGG + chr5_4:50436960-50436979 Msa0856080:CDS 50.0%
AATCTGATGACCCCACACAC+TGG - chr5_4:50437033-50437052 None:intergenic 50.0%
CTGCTGAGGATCATGAATGG+TGG + chr5_4:50437144-50437163 Msa0856080:CDS 50.0%
CTGAGGATCATGAATGGTGG+TGG + chr5_4:50437147-50437166 Msa0856080:CDS 50.0%
!! AGGATCATGAATGGTGGTGG+AGG + chr5_4:50437150-50437169 Msa0856080:CDS 50.0%
GGATCGAGATCCATCTAGCA+TGG - chr5_4:50437366-50437385 None:intergenic 50.0%
! GGCCGACCTCTAAAAAGTAG+AGG + chr5_4:50437457-50437476 Msa0856080:intron 50.0%
ATAAGTTCGCGCTCGACTCA+AGG + chr5_4:50437491-50437510 Msa0856080:intron 50.0%
ACCCAGTTGATCCACCACAA+AGG - chr5_4:50437649-50437668 None:intergenic 50.0%
! GTTGTGCTGGTGTCGGACAT+CGG - chr5_4:50434368-50434387 None:intergenic 55.0%
GGCCTGAACCCTCCAATTTC+CGG + chr5_4:50434654-50434673 Msa0856080:intron 55.0%
CTCCGGAAATTGGAGGGTTC+AGG - chr5_4:50434659-50434678 None:intergenic 55.0%
CTGAACCCTCCAATTTCCGG+AGG + chr5_4:50434657-50434676 Msa0856080:intron 55.0%
CCCTCCAATTTCCGGAGGAA+TGG + chr5_4:50434662-50434681 Msa0856080:intron 55.0%
CCCATTCCTCCGGAAATTGG+AGG - chr5_4:50434666-50434685 None:intergenic 55.0%
AGGCCCATTCCTCCGGAAAT+TGG - chr5_4:50434669-50434688 None:intergenic 55.0%
CGCGCATGAGAATCATGGCA+AGG - chr5_4:50435640-50435659 None:intergenic 55.0%
TTCGCAGCAGCACTTGGAAC+AGG + chr5_4:50436016-50436035 Msa0856080:intron 55.0%
GCATTAACGTCCGGCATTGC+CGG + chr5_4:50436255-50436274 Msa0856080:CDS 55.0%
!! GGCAGGTATTGAGTGGAGCA+CGG - chr5_4:50436360-50436379 None:intergenic 55.0%
TCCACTGCAGCACTACCCTT+TGG + chr5_4:50436777-50436796 Msa0856080:CDS 55.0%
TCCAAAGGGTAGTGCTGCAG+TGG - chr5_4:50436781-50436800 None:intergenic 55.0%
TTTGGCTGCAGATGCGGAAG+AGG - chr5_4:50437387-50437406 None:intergenic 55.0%
TCTTCCGCATCTGCAGCCAA+AGG + chr5_4:50437386-50437405 Msa0856080:intron 55.0%
! CTGGTGTCGGACATCGGACT+CGG - chr5_4:50434362-50434381 None:intergenic 60.0%
CCGACCTTTGGCTGCAGATG+CGG - chr5_4:50437393-50437412 None:intergenic 60.0%
CCGCATCTGCAGCCAAAGGT+CGG + chr5_4:50437390-50437409 Msa0856080:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 50433786 50438134 50433786 ID=Msa0856080;Name=Msa0856080
chr5_4 mRNA 50433786 50438134 50433786 ID=Msa0856080-mRNA-1;Parent=Msa0856080;Name=Msa0856080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=11|0.8|0.83|1|1|1|6|275|500
chr5_4 exon 50433786 50433954 50433786 ID=Msa0856080-mRNA-1:exon:15778;Parent=Msa0856080-mRNA-1
chr5_4 exon 50434945 50434985 50434945 ID=Msa0856080-mRNA-1:exon:15779;Parent=Msa0856080-mRNA-1
chr5_4 exon 50435093 50435534 50435093 ID=Msa0856080-mRNA-1:exon:15780;Parent=Msa0856080-mRNA-1
chr5_4 exon 50436167 50436323 50436167 ID=Msa0856080-mRNA-1:exon:15781;Parent=Msa0856080-mRNA-1
chr5_4 exon 50436687 50437171 50436687 ID=Msa0856080-mRNA-1:exon:15782;Parent=Msa0856080-mRNA-1
chr5_4 exon 50437640 50438134 50437640 ID=Msa0856080-mRNA-1:exon:15783;Parent=Msa0856080-mRNA-1
chr5_4 five_prime_UTR 50433786 50433796 50433786 ID=Msa0856080-mRNA-1:five_prime_utr;Parent=Msa0856080-mRNA-1
chr5_4 CDS 50433797 50433954 50433797 ID=Msa0856080-mRNA-1:cds;Parent=Msa0856080-mRNA-1
chr5_4 CDS 50434945 50434985 50434945 ID=Msa0856080-mRNA-1:cds;Parent=Msa0856080-mRNA-1
chr5_4 CDS 50435093 50435534 50435093 ID=Msa0856080-mRNA-1:cds;Parent=Msa0856080-mRNA-1
chr5_4 CDS 50436167 50436323 50436167 ID=Msa0856080-mRNA-1:cds;Parent=Msa0856080-mRNA-1
chr5_4 CDS 50436687 50437171 50436687 ID=Msa0856080-mRNA-1:cds;Parent=Msa0856080-mRNA-1
chr5_4 CDS 50437640 50437859 50437640 ID=Msa0856080-mRNA-1:cds;Parent=Msa0856080-mRNA-1
chr5_4 three_prime_UTR 50437860 50438134 50437860 ID=Msa0856080-mRNA-1:three_prime_utr;Parent=Msa0856080-mRNA-1
Gene Sequence

>Msa0856080

ATGGAAAAGTCAACGACATGTTTGGTTAGTGCCATTGTGATCCTATGTTGTTTCTGCTGTATAAACTATGTTACATCTGATGCATCAGATCATCGTTATAAAGAAGGTGATTTTGTACCGTTTTATGCAAACAAGGTGGGACCCTTTCATAATCCCAGTGAGACATACAGATATTTTGATCTTCCCTTTTGTTCGCCAGAAAATGTGGAAGAAAAGAAAGAAGATCTTGGTGAAGTTTTGAATGGTGATAGACTAGTTGTTGCTCCTTACAAACTTGAATTCTTGATTGATAAAAAACCTGAGAGCATTTGCCAAAAGATGCTGACAAGAAAAGAGGTTGCTCAATTCAGACATGCTGTTTTGAAGGACTATTTCTATCAAATGTACTATGATGACTTGCCAATTTGGGGTTTCCTTGGAAGATTTGAAACTGATGAAAAAGATGTTGACACAAATGAGGCCACAGTTTATCTTTTTAGGAATGTTCATTTTGAGATTCTGTACAATAACGATCGTATTATCGATGTTTTCGTTAAAAATGATCCGAATGCTGTTGTGGACTTGACAGAAGATAGAGAGGTAAATGTGGATTTCACATATTCTGTCAAATGGATTGAAACAGATATTCCATTTGAGAAAAGTGTAATCTTCATCTTTATGCTTGCTCTAGTTGGTGTTTTCTATCCATACAACAGGGGAGCTTTGTTTACTGCACTGGTTGTCATATACGCATTAACGTCCGGCATTGCCGGTTATTCTGCAGCTTCCTTCTATTACATGATTGAAGGGAAAAATTGGGTGAAAATTTTGGTGTTAACTGGTAGTCTATTCTCTGGACCATTGTTTTTGACATTCAGCTTTCTTAACACGGTTGCTGTCGCCTATAACTCCACTGCAGCACTACCCTTTGGAACAATTGTGGTTATTTTCTTAATATGGACACTTGTAACCTCACCTTTATTGGTATTGGGTGGGATTGCTGGTAAGAATAGCCAATCAGAGTTTCAAGCACCTTGTCGAACCAACAAGTATCCGAGGGAGATTCCTAAACTACCTTGGTACCGTAAAACTCTTCCTCAAATGGCTATGGCTGGATTTTTGCCATTCAGTGCCATTTTCATTGAACTCTACTACATATTTGCCAGTGTGTGGGGTCATCAGATTTATACCATATACAGCATTTTGTTCATTGTTTTCATCATTCTTTTGATTGTCACTGCTTTTGGTAATGTGGCATTGACATACTTTCAACTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTCTTTCCTTTGTGGTGGATCAACTGGGTTGTTCATATATGGTTACTGCATGTTTTTCTACCATGCAAGATCAGATATGTCTGGTTTCATGCAAACTTCTTTCTTTTTCGGCTACATGGCTTGCATTTGCTATGGTTTCTTTCTTATGCTTGGAACTGTGGGTTTCAGAGCTTCTTTAATCTTTGTCAGCCACATATACCGTTCCCTCAAGTGTGAATAG

Protein sequence

>Msa0856080

MEKSTTCLVSAIVILCCFCCINYVTSDASDHRYKEGDFVPFYANKVGPFHNPSETYRYFDLPFCSPENVEEKKEDLGEVLNGDRLVVAPYKLEFLIDKKPESICQKMLTRKEVAQFRHAVLKDYFYQMYYDDLPIWGFLGRFETDEKDVDTNEATVYLFRNVHFEILYNNDRIIDVFVKNDPNAVVDLTEDREVNVDFTYSVKWIETDIPFEKSVIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYSAASFYYMIEGKNWVKILVLTGSLFSGPLFLTFSFLNTVAVAYNSTAALPFGTIVVIFLIWTLVTSPLLVLGGIAGKNSQSEFQAPCRTNKYPREIPKLPWYRKTLPQMAMAGFLPFSAIFIELYYIFASVWGHQIYTIYSILFIVFIILLIVTAFGNVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYGYCMFFYHARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLIFVSHIYRSLKCE*