Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003840 | Msa0007810 | -0.806317 | 8.724737e-50 | -8.615850e-47 |
| Msa0003840 | Msa0011060 | -0.804413 | 2.185816e-49 | -8.615850e-47 |
| Msa0003840 | Msa0011100 | -0.802504 | 5.437287e-49 | -8.615850e-47 |
| Msa0003840 | Msa0011410 | -0.803446 | 3.472064e-49 | -8.615850e-47 |
| Msa0003840 | Msa0032890 | -0.803833 | 2.886610e-49 | -8.615850e-47 |
| Msa0003840 | Msa0032930 | -0.805219 | 1.483404e-49 | -8.615850e-47 |
| Msa0003840 | Msa0034590 | -0.833536 | 5.042241e-56 | -8.615850e-47 |
| Msa0003840 | Msa0034700 | -0.804391 | 2.209463e-49 | -8.615850e-47 |
| Msa0003840 | Msa0039780 | -0.813396 | 2.614418e-51 | -8.615850e-47 |
| Msa0003840 | Msa0042950 | -0.802620 | 5.145318e-49 | -8.615850e-47 |
| Msa0003840 | Msa0049670 | -0.822374 | 2.451908e-53 | -8.615850e-47 |
| Msa0003840 | Msa0056220 | -0.805583 | 1.244336e-49 | -8.615850e-47 |
| Msa0003840 | Msa0056230 | -0.816135 | 6.462347e-52 | -8.615850e-47 |
| Msa0003840 | Msa0066890 | -0.814814 | 1.271733e-51 | -8.615850e-47 |
| Msa0003840 | Msa0080060 | -0.815874 | 7.393573e-52 | -8.615850e-47 |
| Msa0003840 | Msa0087370 | -0.816559 | 5.196581e-52 | -8.615850e-47 |
| Msa0003840 | Msa0091220 | -0.800454 | 1.430491e-48 | -8.615850e-47 |
| Msa0003840 | Msa0091240 | -0.800017 | 1.755543e-48 | -8.615850e-47 |
| Msa0003840 | Msa0095810 | -0.803441 | 3.480421e-49 | -8.615850e-47 |
| Msa0003840 | Msa0129820 | -0.812937 | 3.297616e-51 | -8.615850e-47 |
| Msa0003840 | Msa0130360 | 0.802240 | 6.163077e-49 | -8.615850e-47 |
| Msa0003840 | Msa0134120 | -0.802225 | 6.207152e-49 | -8.615850e-47 |
| Msa0003840 | Msa0136180 | -0.807440 | 5.049358e-50 | -8.615850e-47 |
| Msa0003840 | Msa0146390 | 0.920437 | 1.280794e-87 | -8.615850e-47 |
| Msa0003840 | Msa0151380 | -0.801529 | 8.623524e-49 | -8.615850e-47 |
| Msa0003840 | Msa0154880 | -0.826493 | 2.631808e-54 | -8.615850e-47 |
| Msa0003840 | Msa0164310 | -0.815480 | 9.050033e-52 | -8.615850e-47 |
| Msa0003840 | Msa0170640 | -0.814049 | 1.877626e-51 | -8.615850e-47 |
| Msa0003840 | Msa0173380 | 0.817823 | 2.699630e-52 | -8.615850e-47 |
| Msa0003840 | Msa0173580 | -0.803358 | 3.621538e-49 | -8.615850e-47 |
| Msa0003840 | Msa0175240 | -0.821346 | 4.240287e-53 | -8.615850e-47 |
| Msa0003840 | Msa0176370 | 0.814618 | 1.405780e-51 | -8.615850e-47 |
| Msa0003840 | Msa0183310 | -0.800841 | 1.192959e-48 | -8.615850e-47 |
| Msa0003840 | Msa0183960 | -0.805672 | 1.192292e-49 | -8.615850e-47 |
| Msa0003840 | Msa0186400 | -0.802176 | 6.352544e-49 | -8.615850e-47 |
| Msa0003840 | Msa0190470 | -0.820416 | 6.937965e-53 | -8.615850e-47 |
| Msa0003840 | Msa0202650 | 0.802382 | 5.760769e-49 | -8.615850e-47 |
| Msa0003840 | Msa0228360 | -0.819775 | 9.727499e-53 | -8.615850e-47 |
| Msa0003840 | Msa0232660 | -0.809652 | 1.702043e-50 | -8.615850e-47 |
| Msa0003840 | Msa0258280 | -0.811494 | 6.806444e-51 | -8.615850e-47 |
| Msa0003840 | Msa0293070 | -0.811857 | 5.677064e-51 | -8.615850e-47 |
| Msa0003840 | Msa0320170 | 0.801346 | 9.403304e-49 | -8.615850e-47 |
| Msa0003840 | Msa0322460 | 0.802312 | 5.955702e-49 | -8.615850e-47 |
| Msa0003840 | Msa0331070 | -0.817334 | 3.479477e-52 | -8.615850e-47 |
| Msa0003840 | Msa0336550 | -0.805604 | 1.232097e-49 | -8.615850e-47 |
| Msa0003840 | Msa0369580 | -0.823997 | 1.024642e-53 | -8.615850e-47 |
| Msa0003840 | Msa0375930 | -0.818221 | 2.195465e-52 | -8.615850e-47 |
| Msa0003840 | Msa0378440 | -0.817465 | 3.251031e-52 | -8.615850e-47 |
| Msa0003840 | Msa0417000 | -0.811856 | 5.679407e-51 | -8.615850e-47 |
| Msa0003840 | Msa0424570 | -0.817296 | 3.549590e-52 | -8.615850e-47 |
| Msa0003840 | Msa0427890 | -0.818967 | 1.486918e-52 | -8.615850e-47 |
| Msa0003840 | Msa0433090 | 0.804752 | 1.857532e-49 | -8.615850e-47 |
| Msa0003840 | Msa0438150 | -0.805535 | 1.274065e-49 | -8.615850e-47 |
| Msa0003840 | Msa0463820 | -0.832726 | 8.018080e-56 | -8.615850e-47 |
| Msa0003840 | Msa0474120 | -0.815410 | 9.378197e-52 | -8.615850e-47 |
| Msa0003840 | Msa0483410 | -0.804143 | 2.488583e-49 | -8.615850e-47 |
| Msa0003840 | Msa0484590 | -0.810012 | 1.424191e-50 | -8.615850e-47 |
| Msa0003840 | Msa0516000 | -0.820100 | 8.198635e-53 | -8.615850e-47 |
| Msa0003840 | Msa0524710 | 0.806680 | 7.311751e-50 | -8.615850e-47 |
| Msa0003840 | Msa0541940 | 0.810161 | 1.322386e-50 | -8.615850e-47 |
| Msa0003840 | Msa0550980 | -0.801610 | 8.301531e-49 | -8.615850e-47 |
| Msa0003840 | Msa0559440 | -0.802667 | 5.032674e-49 | -8.615850e-47 |
| Msa0003840 | Msa0559640 | -0.819560 | 1.089374e-52 | -8.615850e-47 |
| Msa0003840 | Msa0564580 | -0.805322 | 1.411451e-49 | -8.615850e-47 |
| Msa0003840 | Msa0575960 | -0.818112 | 2.323779e-52 | -8.615850e-47 |
| Msa0003840 | Msa0577960 | -0.821023 | 5.031681e-53 | -8.615850e-47 |
| Msa0003840 | Msa0578830 | 0.804957 | 1.682850e-49 | -8.615850e-47 |
| Msa0003840 | Msa0578930 | 0.806081 | 9.779467e-50 | -8.615850e-47 |
| Msa0003840 | Msa0590620 | -0.803469 | 3.434702e-49 | -8.615850e-47 |
| Msa0003840 | Msa0597370 | -0.815710 | 8.042302e-52 | -8.615850e-47 |
| Msa0003840 | Msa0603310 | 0.803815 | 2.911421e-49 | -8.615850e-47 |
| Msa0003840 | Msa0620900 | 0.814220 | 1.721543e-51 | -8.615850e-47 |
| Msa0003840 | Msa0622800 | -0.802719 | 4.909998e-49 | -8.615850e-47 |
| Msa0003840 | Msa0625550 | -0.822551 | 2.229679e-53 | -8.615850e-47 |
| Msa0003840 | Msa0644340 | 0.813571 | 2.392676e-51 | -8.615850e-47 |
| Msa0003840 | Msa0651720 | -0.802875 | 4.558390e-49 | -8.615850e-47 |
| Msa0003840 | Msa0654400 | -0.803580 | 3.258268e-49 | -8.615850e-47 |
| Msa0003840 | Msa0654500 | -0.811091 | 8.324871e-51 | -8.615850e-47 |
| Msa0003840 | Msa0654570 | -0.825107 | 5.614793e-54 | -8.615850e-47 |
| Msa0003840 | Msa0656570 | -0.800529 | 1.380982e-48 | -8.615850e-47 |
| Msa0003840 | Msa0676570 | -0.823895 | 1.082676e-53 | -8.615850e-47 |
| Msa0003840 | Msa0685390 | -0.818222 | 2.193419e-52 | -8.615850e-47 |
| Msa0003840 | Msa0701800 | -0.802504 | 5.436314e-49 | -8.615850e-47 |
| Msa0003840 | Msa0706700 | -0.806271 | 8.918967e-50 | -8.615850e-47 |
| Msa0003840 | Msa0708840 | -0.831602 | 1.520905e-55 | -8.615850e-47 |
| Msa0003840 | Msa0714230 | -0.813465 | 2.524288e-51 | -8.615850e-47 |
| Msa0003840 | Msa0736560 | 0.833705 | 4.573222e-56 | -8.615850e-47 |
| Msa0003840 | Msa0742690 | -0.815804 | 7.661679e-52 | -8.615850e-47 |
| Msa0003840 | Msa0745630 | -0.801569 | 8.462616e-49 | -8.615850e-47 |
| Msa0003840 | Msa0779830 | -0.804370 | 2.232277e-49 | -8.615850e-47 |
| Msa0003840 | Msa0781700 | 0.810395 | 1.177527e-50 | -8.615850e-47 |
| Msa0003840 | Msa0783680 | 0.803363 | 3.612527e-49 | -8.615850e-47 |
| Msa0003840 | Msa0800120 | 0.800032 | 1.743196e-48 | -8.615850e-47 |
| Msa0003840 | Msa0800150 | 0.826118 | 3.233127e-54 | -8.615850e-47 |
| Msa0003840 | Msa0812050 | 0.810518 | 1.107427e-50 | -8.615850e-47 |
| Msa0003840 | Msa0826240 | 0.800584 | 1.346058e-48 | -8.615850e-47 |
| Msa0003840 | Msa0827560 | -0.806701 | 7.239595e-50 | -8.615850e-47 |
| Msa0003840 | Msa0829770 | -0.808057 | 3.733128e-50 | -8.615850e-47 |
| Msa0003840 | Msa0856080 | 0.834291 | 3.263815e-56 | -8.615850e-47 |
| Msa0003840 | Msa0862750 | -0.804619 | 1.980396e-49 | -8.615850e-47 |
| Msa0003840 | Msa0879940 | -0.803483 | 3.412065e-49 | -8.615850e-47 |
| Msa0003840 | Msa0882270 | -0.803118 | 4.061161e-49 | -8.615850e-47 |
| Msa0003840 | Msa0921860 | 0.821939 | 3.092217e-53 | -8.615850e-47 |
| Msa0003840 | Msa0956600 | -0.815055 | 1.124707e-51 | -8.615850e-47 |
| Msa0003840 | Msa0967250 | -0.809873 | 1.526100e-50 | -8.615850e-47 |
| Msa0003840 | Msa0971780 | -0.800538 | 1.374959e-48 | -8.615850e-47 |
| Msa0003840 | Msa0973850 | 0.803962 | 2.713494e-49 | -8.615850e-47 |
| Msa0003840 | Msa0983680 | -0.812213 | 4.748169e-51 | -8.615850e-47 |
| Msa0003840 | Msa0985980 | -0.811191 | 7.920397e-51 | -8.615850e-47 |
| Msa0003840 | Msa1011140 | -0.839977 | 1.147243e-57 | -8.615850e-47 |
| Msa0003840 | Msa1017610 | -0.805641 | 1.210086e-49 | -8.615850e-47 |
| Msa0003840 | Msa1019040 | -0.820472 | 6.736431e-53 | -8.615850e-47 |
| Msa0003840 | Msa1026160 | -0.817460 | 3.260707e-52 | -8.615850e-47 |
| Msa0003840 | Msa1039150 | -0.819845 | 9.379301e-53 | -8.615850e-47 |
| Msa0003840 | Msa1043660 | 0.966090 | 1.851299e-125 | -8.615850e-47 |
| Msa0003840 | Msa1065090 | -0.835915 | 1.270971e-56 | -8.615850e-47 |
| Msa0003840 | Msa1078280 | -0.802948 | 4.402928e-49 | -8.615850e-47 |
| Msa0003840 | Msa1083660 | -0.819725 | 9.988727e-53 | -8.615850e-47 |
| Msa0003840 | Msa1085570 | -0.820868 | 5.462197e-53 | -8.615850e-47 |
| Msa0003840 | Msa1085820 | 0.800022 | 1.751616e-48 | -8.615850e-47 |
| Msa0003840 | Msa1086030 | -0.802997 | 4.302097e-49 | -8.615850e-47 |
| Msa0003840 | Msa1101380 | -0.803689 | 3.091925e-49 | -8.615850e-47 |
| Msa0003840 | Msa1104020 | -0.818602 | 1.799714e-52 | -8.615850e-47 |
| Msa0003840 | Msa1123440 | -0.802728 | 4.887240e-49 | -8.615850e-47 |
| Msa0003840 | Msa1129130 | -0.803783 | 2.957026e-49 | -8.615850e-47 |
| Msa0003840 | Msa1129470 | -0.814116 | 1.814356e-51 | -8.615850e-47 |
| Msa0003840 | Msa1169780 | -0.802521 | 5.394121e-49 | -8.615850e-47 |
| Msa0003840 | Msa1184680 | 0.825945 | 3.553724e-54 | -8.615850e-47 |
| Msa0003840 | Msa1199540 | -0.814205 | 1.734824e-51 | -8.615850e-47 |
| Msa0003840 | Msa1215150 | 0.800292 | 1.542982e-48 | -8.615850e-47 |
| Msa0003840 | Msa1219530 | -0.843854 | 1.084820e-58 | -8.615850e-47 |
| Msa0003840 | Msa1220390 | -0.808011 | 3.818624e-50 | -8.615850e-47 |
| Msa0003840 | Msa1264940 | 0.800549 | 1.368334e-48 | -8.615850e-47 |
| Msa0003840 | Msa1265900 | -0.812090 | 5.050134e-51 | -8.615850e-47 |
| Msa0003840 | Msa1279200 | -0.811252 | 7.684890e-51 | -8.615850e-47 |
| Msa0003840 | Msa1303150 | 0.803152 | 3.995277e-49 | -8.615850e-47 |
| Msa0003840 | Msa1305970 | -0.803827 | 2.895172e-49 | -8.615850e-47 |
| Msa0003840 | Msa1328680 | -0.814451 | 1.530822e-51 | -8.615850e-47 |
| Msa0003840 | Msa1331720 | -0.800671 | 1.292185e-48 | -8.615850e-47 |
| Msa0003840 | Msa1332340 | -0.814547 | 1.457507e-51 | -8.615850e-47 |
| Msa0003840 | Msa1333220 | -0.846515 | 2.069624e-59 | -8.615850e-47 |
| Msa0003840 | Msa1354860 | -0.816851 | 4.468562e-52 | -8.615850e-47 |
| Msa0003840 | Msa1357070 | 0.807371 | 5.223077e-50 | -8.615850e-47 |
| Msa0003840 | Msa1360070 | -0.816501 | 5.354184e-52 | -8.615850e-47 |
| Msa0003840 | Msa1374140 | 0.954025 | 7.468994e-112 | -8.615850e-47 |
| Msa0003840 | Msa1374210 | -0.818982 | 1.475200e-52 | -8.615850e-47 |
| Msa0003840 | Msa1381300 | -0.821648 | 3.610656e-53 | -8.615850e-47 |
| Msa0003840 | Msa1381870 | -0.828476 | 8.804107e-55 | -8.615850e-47 |
| Msa0003840 | Msa1382640 | 0.956083 | 6.792719e-114 | -8.615850e-47 |
| Msa0003840 | Msa1386180 | -0.808704 | 2.716726e-50 | -8.615850e-47 |
| Msa0003840 | Msa1395200 | -0.814089 | 1.840287e-51 | -8.615850e-47 |
| Msa0003840 | Msa1397560 | -0.820182 | 7.851169e-53 | -8.615850e-47 |
| Msa0003840 | Msa1401910 | 0.804005 | 2.658296e-49 | -8.615850e-47 |
| Msa0003840 | Msa1409360 | -0.844434 | 7.577791e-59 | -8.615850e-47 |
| Msa0003840 | Msa1412800 | -0.824418 | 8.161111e-54 | -8.615850e-47 |
| Msa0003840 | Msa1422820 | -0.822032 | 2.941828e-53 | -8.615850e-47 |
| Msa0003840 | Msa1426690 | -0.804692 | 1.912082e-49 | -8.615850e-47 |
| Msa0003840 | Msa1428230 | -0.805904 | 1.065858e-49 | -8.615850e-47 |
| Msa0003840 | Msa1433060 | -0.815797 | 7.691462e-52 | -8.615850e-47 |
| Msa0003840 | Msa1437590 | 0.805149 | 1.534604e-49 | -8.615850e-47 |
| Msa0003840 | Msa1438410 | -0.805641 | 1.210256e-49 | -8.615850e-47 |
| Msa0003840 | Msa1448410 | -0.815545 | 8.752455e-52 | -8.615850e-47 |
| Msa0003840 | Msa1459130 | -0.802892 | 4.521210e-49 | -8.615850e-47 |
| Msa0003840 | Msa1462210 | -0.815487 | 9.016242e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003840 | MtrunA17_Chr1g0155341 | 89.510 | 143 | 13 | 1 | 1 | 141 | 1 | 143 | 5.57e-92 | 262 |
| Msa0003840 | MtrunA17_Chr3g0141671 | 62.937 | 143 | 44 | 5 | 1 | 140 | 1 | 137 | 3.17e-55 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003840 | AT1G19530.2 | 41.538 | 130 | 57 | 3 | 1 | 129 | 1 | 112 | 3.05e-18 | 75.5 |
| Msa0003840 | AT1G19530.1 | 41.538 | 130 | 57 | 3 | 1 | 129 | 1 | 112 | 3.05e-18 | 75.5 |
Find 39 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGAAATTGATGCTTAT+TGG | 0.156482 | 1_1:+6354784 | Msa0003840:CDS |
| AATCATATGGTACCTGATTT+AGG | 0.175839 | 1_1:-6354606 | None:intergenic |
| GAACGTACTTGACACAAATT+TGG | 0.215908 | 1_1:+6356420 | Msa0003840:CDS |
| GTCAAGTACGTTCATATTAA+AGG | 0.224800 | 1_1:-6356410 | None:intergenic |
| CTGTTTCAGCCATACTTAAA+AGG | 0.239435 | 1_1:+6354745 | Msa0003840:intron |
| CTGAATAGTCTCTGACAAAT+TGG | 0.254276 | 1_1:-6354850 | None:intergenic |
| GCAAATCAACGTGTGTTTCT+TGG | 0.281985 | 1_1:+6356871 | Msa0003840:three_prime_UTR |
| ACCACAATGCAATTTCTAAA+TGG | 0.294299 | 1_1:-6354509 | None:intergenic |
| CAGTTTCACGTTGCCAGTTT+GGG | 0.309436 | 1_1:+6356661 | Msa0003840:CDS |
| CAATTTGTCAGAGACTATTC+AGG | 0.322635 | 1_1:+6354851 | Msa0003840:CDS |
| GCAGGTGGACTAAGAGTAAC+TGG | 0.334701 | 1_1:+6356584 | Msa0003840:intron |
| TCAAGTACGTTCATATTAAA+GGG | 0.359264 | 1_1:-6356409 | None:intergenic |
| ACAGTTTCACGTTGCCAGTT+TGG | 0.359415 | 1_1:+6356660 | Msa0003840:CDS |
| TCTTCAATTGATCCTAAATC+AGG | 0.362673 | 1_1:+6354594 | Msa0003840:CDS |
| TTGGATGCAGCTTCCATCAT+TGG | 0.363993 | 1_1:-6356625 | None:intergenic |
| GGGTTCTCTTATGGCAGGAT+GGG | 0.445491 | 1_1:+6354566 | Msa0003840:CDS |
| TCTGAATGAGCCACCAATGA+TGG | 0.467236 | 1_1:+6356612 | Msa0003840:CDS |
| CCATGCCCGTGGCCCACGTA+AGG | 0.471373 | 1_1:+6356383 | Msa0003840:CDS |
| GGGTCCCTTACGTGGGCCAC+GGG | 0.472849 | 1_1:-6356388 | None:intergenic |
| GGGGTCCCTTACGTGGGCCA+CGG | 0.474803 | 1_1:-6356389 | None:intergenic |
| CCTTACGTGGGCCACGGGCA+TGG | 0.492032 | 1_1:-6356383 | None:intergenic |
| GGTTCTCTTATGGCAGGATG+GGG | 0.492223 | 1_1:+6354567 | Msa0003840:CDS |
| CAATCACTAACTTCATCTAC+GGG | 0.495529 | 1_1:-6356700 | None:intergenic |
| GAAATCAAAGAAGAAGATAG+AGG | 0.499005 | 1_1:+6354806 | Msa0003840:CDS |
| GATGCAGCTTCCATCATTGG+TGG | 0.505474 | 1_1:-6356622 | None:intergenic |
| TGGGTTCTCTTATGGCAGGA+TGG | 0.507870 | 1_1:+6354565 | Msa0003840:CDS |
| TCAATCACTAACTTCATCTA+CGG | 0.513170 | 1_1:-6356701 | None:intergenic |
| AAACTGTGCTGCATACTTGT+TGG | 0.515262 | 1_1:-6356644 | None:intergenic |
| TATTAAAGGGGTCCCTTACG+TGG | 0.530982 | 1_1:-6356396 | None:intergenic |
| AAAATGGGTTCTCTTATGGC+AGG | 0.548408 | 1_1:+6354561 | Msa0003840:exon |
| CATGCCCGTGGCCCACGTAA+GGG | 0.568293 | 1_1:+6356384 | Msa0003840:CDS |
| ACAAATTGGAAATTGCTGTA+AGG | 0.584160 | 1_1:-6354836 | None:intergenic |
| TCCATTTAGAAATTGCATTG+TGG | 0.619587 | 1_1:+6354508 | Msa0003840:five_prime_UTR |
| GACATAAATATATACATACA+AGG | 0.637376 | 1_1:-6356750 | None:intergenic |
| GAAGTCAATGACCATGCCCG+TGG | 0.649977 | 1_1:+6356372 | Msa0003840:CDS |
| CAAGTACGTTCATATTAAAG+GGG | 0.651488 | 1_1:-6356408 | None:intergenic |
| ATTAAAGGGGTCCCTTACGT+GGG | 0.678500 | 1_1:-6356395 | None:intergenic |
| CAGGTGGACTAAGAGTAACT+GGG | 0.688506 | 1_1:+6356585 | Msa0003840:intron |
| AATCACTAACTTCATCTACG+GGG | 0.796732 | 1_1:-6356699 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTTGGAAAAATT+TGG | - | chr1_1:6354954-6354973 | None:intergenic | 10.0% |
| !!! | TACAAAATCATATATATTTT+CGG | - | chr1_1:6355901-6355920 | None:intergenic | 10.0% |
| !! | TGAAATAAAAACATTAAAAT+TGG | - | chr1_1:6356273-6356292 | None:intergenic | 10.0% |
| !!! | AAAAGTATAACTATAATAAT+TGG | - | chr1_1:6356489-6356508 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTGGAAAAATT+TGG | - | chr1_1:6354954-6354973 | None:intergenic | 10.0% |
| !!! | TACAAAATCATATATATTTT+CGG | - | chr1_1:6355901-6355920 | None:intergenic | 10.0% |
| !! | TGAAATAAAAACATTAAAAT+TGG | - | chr1_1:6356273-6356292 | None:intergenic | 10.0% |
| !!! | AAAAGTATAACTATAATAAT+TGG | - | chr1_1:6356489-6356508 | None:intergenic | 10.0% |
| !! | AATAAATAAAATACATACGA+AGG | + | chr1_1:6354968-6354987 | Msa0003840:intron | 15.0% |
| !!! | AAATACATCTTTAATTTCAT+TGG | + | chr1_1:6355127-6355146 | Msa0003840:intron | 15.0% |
| !! | AGATGAAATTCAATAAATAA+GGG | - | chr1_1:6355294-6355313 | None:intergenic | 15.0% |
| !! | TAGATGAAATTCAATAAATA+AGG | - | chr1_1:6355295-6355314 | None:intergenic | 15.0% |
| !! | TATAGTATTATATATAGTGT+TGG | - | chr1_1:6355588-6355607 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_1:6356042-6356061 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_1:6356043-6356062 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1_1:6356107-6356126 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1_1:6356108-6356127 | None:intergenic | 15.0% |
| !! | TTTACACACAATATTAAAAT+TGG | - | chr1_1:6356244-6356263 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTTATTTCATGA+TGG | + | chr1_1:6356276-6356295 | Msa0003840:intron | 15.0% |
| !! | AATAAATAAAATACATACGA+AGG | + | chr1_1:6354968-6354987 | Msa0003840:intron | 15.0% |
| !!! | AAATACATCTTTAATTTCAT+TGG | + | chr1_1:6355127-6355146 | Msa0003840:intron | 15.0% |
| !! | AGATGAAATTCAATAAATAA+GGG | - | chr1_1:6355294-6355313 | None:intergenic | 15.0% |
| !! | TAGATGAAATTCAATAAATA+AGG | - | chr1_1:6355295-6355314 | None:intergenic | 15.0% |
| !! | TATAGTATTATATATAGTGT+TGG | - | chr1_1:6355588-6355607 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_1:6356042-6356061 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_1:6356043-6356062 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1_1:6356107-6356126 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1_1:6356108-6356127 | None:intergenic | 15.0% |
| !! | TTTACACACAATATTAAAAT+TGG | - | chr1_1:6356244-6356263 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTTATTTCATGA+TGG | + | chr1_1:6356276-6356295 | Msa0003840:intron | 15.0% |
| !! | TTGATTCTATACAGAAAAAA+TGG | + | chr1_1:6354545-6354564 | Msa0003840:exon | 20.0% |
| !! | TGATTCTATACAGAAAAAAT+GGG | + | chr1_1:6354546-6354565 | Msa0003840:exon | 20.0% |
| !!! | AAGTATCGTTATTAATCATA+TGG | - | chr1_1:6354622-6354641 | None:intergenic | 20.0% |
| !! | TAATCATATTAGAACTTAGA+CGG | + | chr1_1:6354693-6354712 | Msa0003840:intron | 20.0% |
| !! | AAAAGTAATAAATGATGCAT+TGG | - | chr1_1:6355258-6355277 | None:intergenic | 20.0% |
| !! | AAATTCAATAAATAAGGGTA+TGG | - | chr1_1:6355289-6355308 | None:intergenic | 20.0% |
| !!! | ATTAATTGTGTTGATTTCAA+TGG | - | chr1_1:6355378-6355397 | None:intergenic | 20.0% |
| !!! | CTACTATTTTCTTTTTCTTT+TGG | - | chr1_1:6355556-6355575 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+AGG | - | chr1_1:6355973-6355992 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1_1:6356083-6356102 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr1_1:6356106-6356125 | None:intergenic | 20.0% |
| !! | CTAAACATTAATTTCAAACT+TGG | - | chr1_1:6356316-6356335 | None:intergenic | 20.0% |
| !!! | CAAGTTTGAAATTAATGTTT+AGG | + | chr1_1:6356314-6356333 | Msa0003840:intron | 20.0% |
| !! | CATATGCATAATTCATATAT+AGG | - | chr1_1:6356539-6356558 | None:intergenic | 20.0% |
| !! | CTATATATGAATTATGCATA+TGG | + | chr1_1:6356537-6356556 | Msa0003840:intron | 20.0% |
| !!! | TATTAATTTAATTTGAGTGC+AGG | + | chr1_1:6356566-6356585 | Msa0003840:intron | 20.0% |
| !! | GACATAAATATATACATACA+AGG | - | chr1_1:6356753-6356772 | None:intergenic | 20.0% |
| !! | TTGATTCTATACAGAAAAAA+TGG | + | chr1_1:6354545-6354564 | Msa0003840:exon | 20.0% |
| !! | TGATTCTATACAGAAAAAAT+GGG | + | chr1_1:6354546-6354565 | Msa0003840:exon | 20.0% |
| !!! | AAGTATCGTTATTAATCATA+TGG | - | chr1_1:6354622-6354641 | None:intergenic | 20.0% |
| !! | TAATCATATTAGAACTTAGA+CGG | + | chr1_1:6354693-6354712 | Msa0003840:intron | 20.0% |
| !! | AAAAGTAATAAATGATGCAT+TGG | - | chr1_1:6355258-6355277 | None:intergenic | 20.0% |
| !! | AAATTCAATAAATAAGGGTA+TGG | - | chr1_1:6355289-6355308 | None:intergenic | 20.0% |
| !!! | ATTAATTGTGTTGATTTCAA+TGG | - | chr1_1:6355378-6355397 | None:intergenic | 20.0% |
| !!! | CTACTATTTTCTTTTTCTTT+TGG | - | chr1_1:6355556-6355575 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+AGG | - | chr1_1:6355973-6355992 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1_1:6356083-6356102 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr1_1:6356106-6356125 | None:intergenic | 20.0% |
| !! | CTAAACATTAATTTCAAACT+TGG | - | chr1_1:6356316-6356335 | None:intergenic | 20.0% |
| !!! | CAAGTTTGAAATTAATGTTT+AGG | + | chr1_1:6356314-6356333 | Msa0003840:intron | 20.0% |
| !! | CATATGCATAATTCATATAT+AGG | - | chr1_1:6356539-6356558 | None:intergenic | 20.0% |
| !! | CTATATATGAATTATGCATA+TGG | + | chr1_1:6356537-6356556 | Msa0003840:intron | 20.0% |
| !!! | TATTAATTTAATTTGAGTGC+AGG | + | chr1_1:6356566-6356585 | Msa0003840:intron | 20.0% |
| !! | GACATAAATATATACATACA+AGG | - | chr1_1:6356753-6356772 | None:intergenic | 20.0% |
| ! | AAGATGAAATTGATGCTTAT+TGG | + | chr1_1:6354784-6354803 | Msa0003840:CDS | 25.0% |
| !!! | TTTTTTGGAAAAATTTGGTG+TGG | - | chr1_1:6354949-6354968 | None:intergenic | 25.0% |
| ! | AATGAAATGTTAGAGAAAGT+TGG | + | chr1_1:6355002-6355021 | Msa0003840:intron | 25.0% |
| ! | TGCTCCAATTAACAATTATT+AGG | + | chr1_1:6355035-6355054 | Msa0003840:intron | 25.0% |
| ! | GCTCCAATTAACAATTATTA+GGG | + | chr1_1:6355036-6355055 | Msa0003840:intron | 25.0% |
| ! | GAACCCTAATAATTGTTAAT+TGG | - | chr1_1:6355042-6355061 | None:intergenic | 25.0% |
| ! | TACACTTGAAAAAATCAACA+AGG | + | chr1_1:6355523-6355542 | Msa0003840:intron | 25.0% |
| ! | ACACTTGAAAAAATCAACAA+GGG | + | chr1_1:6355524-6355543 | Msa0003840:intron | 25.0% |
| !!! | TATTATATATAGTGTTGGTG+GGG | - | chr1_1:6355583-6355602 | None:intergenic | 25.0% |
| !!! | GTATTATATATAGTGTTGGT+GGG | - | chr1_1:6355584-6355603 | None:intergenic | 25.0% |
| !! | AGTATTATATATAGTGTTGG+TGG | - | chr1_1:6355585-6355604 | None:intergenic | 25.0% |
| !! | TAGTTTTCTAATATGCAAGA+AGG | - | chr1_1:6355840-6355859 | None:intergenic | 25.0% |
| !! | TATATTTTCGGATTTCACTT+AGG | - | chr1_1:6355889-6355908 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr1_1:6355995-6356014 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr1_1:6355996-6356015 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1_1:6356084-6356103 | None:intergenic | 25.0% |
| ! | TCAAGTACGTTCATATTAAA+GGG | - | chr1_1:6356412-6356431 | None:intergenic | 25.0% |
| ! | ACTATAATAATTGGAAGAGT+AGG | - | chr1_1:6356480-6356499 | None:intergenic | 25.0% |
| ! | AAGATGAAATTGATGCTTAT+TGG | + | chr1_1:6354784-6354803 | Msa0003840:CDS | 25.0% |
| !!! | TTTTTTGGAAAAATTTGGTG+TGG | - | chr1_1:6354949-6354968 | None:intergenic | 25.0% |
| ! | AATGAAATGTTAGAGAAAGT+TGG | + | chr1_1:6355002-6355021 | Msa0003840:intron | 25.0% |
| ! | TGCTCCAATTAACAATTATT+AGG | + | chr1_1:6355035-6355054 | Msa0003840:intron | 25.0% |
| ! | GCTCCAATTAACAATTATTA+GGG | + | chr1_1:6355036-6355055 | Msa0003840:intron | 25.0% |
| ! | GAACCCTAATAATTGTTAAT+TGG | - | chr1_1:6355042-6355061 | None:intergenic | 25.0% |
| ! | TACACTTGAAAAAATCAACA+AGG | + | chr1_1:6355523-6355542 | Msa0003840:intron | 25.0% |
| ! | ACACTTGAAAAAATCAACAA+GGG | + | chr1_1:6355524-6355543 | Msa0003840:intron | 25.0% |
| !!! | TATTATATATAGTGTTGGTG+GGG | - | chr1_1:6355583-6355602 | None:intergenic | 25.0% |
| !!! | GTATTATATATAGTGTTGGT+GGG | - | chr1_1:6355584-6355603 | None:intergenic | 25.0% |
| !! | AGTATTATATATAGTGTTGG+TGG | - | chr1_1:6355585-6355604 | None:intergenic | 25.0% |
| !! | TAGTTTTCTAATATGCAAGA+AGG | - | chr1_1:6355840-6355859 | None:intergenic | 25.0% |
| !! | TATATTTTCGGATTTCACTT+AGG | - | chr1_1:6355889-6355908 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr1_1:6355995-6356014 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr1_1:6355996-6356015 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1_1:6356084-6356103 | None:intergenic | 25.0% |
| ! | TCAAGTACGTTCATATTAAA+GGG | - | chr1_1:6356412-6356431 | None:intergenic | 25.0% |
| ! | ACTATAATAATTGGAAGAGT+AGG | - | chr1_1:6356480-6356499 | None:intergenic | 25.0% |
| TCCATTTAGAAATTGCATTG+TGG | + | chr1_1:6354508-6354527 | Msa0003840:five_prime_UTR | 30.0% | |
| ACCACAATGCAATTTCTAAA+TGG | - | chr1_1:6354512-6354531 | None:intergenic | 30.0% | |
| ! | AGAAAAAATGGGTTCTCTTA+TGG | + | chr1_1:6354557-6354576 | Msa0003840:exon | 30.0% |
| TCTTCAATTGATCCTAAATC+AGG | + | chr1_1:6354594-6354613 | Msa0003840:CDS | 30.0% | |
| AATCATATGGTACCTGATTT+AGG | - | chr1_1:6354609-6354628 | None:intergenic | 30.0% | |
| ! | GTGCTTAGTATTTTATGTTG+CGG | + | chr1_1:6354664-6354683 | Msa0003840:intron | 30.0% |
| AGACGGTACTTATATTTATG+AGG | + | chr1_1:6354710-6354729 | Msa0003840:intron | 30.0% | |
| GACGGTACTTATATTTATGA+GGG | + | chr1_1:6354711-6354730 | Msa0003840:intron | 30.0% | |
| ! | TTTCATCTTTTGTAAGTGAC+TGG | - | chr1_1:6354773-6354792 | None:intergenic | 30.0% |
| GAAATCAAAGAAGAAGATAG+AGG | + | chr1_1:6354806-6354825 | Msa0003840:CDS | 30.0% | |
| ACAAATTGGAAATTGCTGTA+AGG | - | chr1_1:6354839-6354858 | None:intergenic | 30.0% | |
| AAGTGACAATTATTGTGAGA+CGG | - | chr1_1:6355192-6355211 | None:intergenic | 30.0% | |
| !!! | GTGACTATTATTTTGAGACA+AGG | - | chr1_1:6355226-6355245 | None:intergenic | 30.0% |
| ! | AATAAATAAGGGTATGGTAG+TGG | - | chr1_1:6355283-6355302 | None:intergenic | 30.0% |
| ! | TCCACTGACTACAATTAATA+AGG | + | chr1_1:6355325-6355344 | Msa0003840:intron | 30.0% |
| ! | CCACTGACTACAATTAATAA+GGG | + | chr1_1:6355326-6355345 | Msa0003840:intron | 30.0% |
| CTCACAATAATAGTCGTTTA+AGG | - | chr1_1:6355426-6355445 | None:intergenic | 30.0% | |
| AAACGACTATTATTGTGAGA+CGG | + | chr1_1:6355427-6355446 | Msa0003840:intron | 30.0% | |
| ACTCAAACACACAAGAAAAA+TGG | - | chr1_1:6355461-6355480 | None:intergenic | 30.0% | |
| TTTCTTGTGTGTTTGAGTAA+TGG | + | chr1_1:6355463-6355482 | Msa0003840:intron | 30.0% | |
| TTACTCTAGTAGAAGAATAC+TGG | - | chr1_1:6355710-6355729 | None:intergenic | 30.0% | |
| ACGCGACAAACATTAATTAT+TGG | + | chr1_1:6355741-6355760 | Msa0003840:intron | 30.0% | |
| AATATGCAAGAAGGACTAAA+AGG | - | chr1_1:6355831-6355850 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1_1:6356099-6356118 | None:intergenic | 30.0% | |
| CAAGTACGTTCATATTAAAG+GGG | - | chr1_1:6356411-6356430 | None:intergenic | 30.0% | |
| GTCAAGTACGTTCATATTAA+AGG | - | chr1_1:6356413-6356432 | None:intergenic | 30.0% | |
| GAGCAACTTATCAACAAAAA+TGG | + | chr1_1:6356442-6356461 | Msa0003840:CDS | 30.0% | |
| AACTTATCAACAAAAATGGC+TGG | + | chr1_1:6356446-6356465 | Msa0003840:CDS | 30.0% | |
| !! | TAATTTAATTTGAGTGCAGG+TGG | + | chr1_1:6356569-6356588 | Msa0003840:intron | 30.0% |
| TCAATCACTAACTTCATCTA+CGG | - | chr1_1:6356704-6356723 | None:intergenic | 30.0% | |
| TCCATTTAGAAATTGCATTG+TGG | + | chr1_1:6354508-6354527 | Msa0003840:five_prime_UTR | 30.0% | |
| ACCACAATGCAATTTCTAAA+TGG | - | chr1_1:6354512-6354531 | None:intergenic | 30.0% | |
| ! | AGAAAAAATGGGTTCTCTTA+TGG | + | chr1_1:6354557-6354576 | Msa0003840:exon | 30.0% |
| TCTTCAATTGATCCTAAATC+AGG | + | chr1_1:6354594-6354613 | Msa0003840:CDS | 30.0% | |
| AATCATATGGTACCTGATTT+AGG | - | chr1_1:6354609-6354628 | None:intergenic | 30.0% | |
| ! | GTGCTTAGTATTTTATGTTG+CGG | + | chr1_1:6354664-6354683 | Msa0003840:intron | 30.0% |
| AGACGGTACTTATATTTATG+AGG | + | chr1_1:6354710-6354729 | Msa0003840:intron | 30.0% | |
| GACGGTACTTATATTTATGA+GGG | + | chr1_1:6354711-6354730 | Msa0003840:intron | 30.0% | |
| ! | TTTCATCTTTTGTAAGTGAC+TGG | - | chr1_1:6354773-6354792 | None:intergenic | 30.0% |
| GAAATCAAAGAAGAAGATAG+AGG | + | chr1_1:6354806-6354825 | Msa0003840:CDS | 30.0% | |
| ACAAATTGGAAATTGCTGTA+AGG | - | chr1_1:6354839-6354858 | None:intergenic | 30.0% | |
| AAGTGACAATTATTGTGAGA+CGG | - | chr1_1:6355192-6355211 | None:intergenic | 30.0% | |
| !!! | GTGACTATTATTTTGAGACA+AGG | - | chr1_1:6355226-6355245 | None:intergenic | 30.0% |
| ! | AATAAATAAGGGTATGGTAG+TGG | - | chr1_1:6355283-6355302 | None:intergenic | 30.0% |
| ! | TCCACTGACTACAATTAATA+AGG | + | chr1_1:6355325-6355344 | Msa0003840:intron | 30.0% |
| ! | CCACTGACTACAATTAATAA+GGG | + | chr1_1:6355326-6355345 | Msa0003840:intron | 30.0% |
| CTCACAATAATAGTCGTTTA+AGG | - | chr1_1:6355426-6355445 | None:intergenic | 30.0% | |
| AAACGACTATTATTGTGAGA+CGG | + | chr1_1:6355427-6355446 | Msa0003840:intron | 30.0% | |
| ACTCAAACACACAAGAAAAA+TGG | - | chr1_1:6355461-6355480 | None:intergenic | 30.0% | |
| TTTCTTGTGTGTTTGAGTAA+TGG | + | chr1_1:6355463-6355482 | Msa0003840:intron | 30.0% | |
| TTACTCTAGTAGAAGAATAC+TGG | - | chr1_1:6355710-6355729 | None:intergenic | 30.0% | |
| ACGCGACAAACATTAATTAT+TGG | + | chr1_1:6355741-6355760 | Msa0003840:intron | 30.0% | |
| AATATGCAAGAAGGACTAAA+AGG | - | chr1_1:6355831-6355850 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1_1:6356099-6356118 | None:intergenic | 30.0% | |
| CAAGTACGTTCATATTAAAG+GGG | - | chr1_1:6356411-6356430 | None:intergenic | 30.0% | |
| GTCAAGTACGTTCATATTAA+AGG | - | chr1_1:6356413-6356432 | None:intergenic | 30.0% | |
| GAGCAACTTATCAACAAAAA+TGG | + | chr1_1:6356442-6356461 | Msa0003840:CDS | 30.0% | |
| AACTTATCAACAAAAATGGC+TGG | + | chr1_1:6356446-6356465 | Msa0003840:CDS | 30.0% | |
| !! | TAATTTAATTTGAGTGCAGG+TGG | + | chr1_1:6356569-6356588 | Msa0003840:intron | 30.0% |
| TCAATCACTAACTTCATCTA+CGG | - | chr1_1:6356704-6356723 | None:intergenic | 30.0% | |
| CTGTTTCAGCCATACTTAAA+AGG | + | chr1_1:6354745-6354764 | Msa0003840:intron | 35.0% | |
| !! | TGACTGGTTCCTTTTAAGTA+TGG | - | chr1_1:6354757-6354776 | None:intergenic | 35.0% |
| CTGAATAGTCTCTGACAAAT+TGG | - | chr1_1:6354853-6354872 | None:intergenic | 35.0% | |
| CAATTTGTCAGAGACTATTC+AGG | + | chr1_1:6354851-6354870 | Msa0003840:CDS | 35.0% | |
| !! | TTTGGAAAAATTTGGTGTGG+CGG | - | chr1_1:6354946-6354965 | None:intergenic | 35.0% |
| CCCTTATTAATTGTAGTCAG+TGG | - | chr1_1:6355329-6355348 | None:intergenic | 35.0% | |
| !! | TGACTAAGAGCACTACAATT+TGG | + | chr1_1:6355611-6355630 | Msa0003840:intron | 35.0% |
| ! | ATTTTCGGATTTCACTTAGG+TGG | - | chr1_1:6355886-6355905 | None:intergenic | 35.0% |
| AGAAAATAGGTCAGTTGTTC+CGG | - | chr1_1:6355960-6355979 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1_1:6356129-6356148 | Msa0003840:intron | 35.0% | |
| CCAAAGTAGGTCAATTAAAC+CGG | + | chr1_1:6356142-6356161 | Msa0003840:intron | 35.0% | |
| CAAAGTAGGTCAATTAAACC+GGG | + | chr1_1:6356143-6356162 | Msa0003840:intron | 35.0% | |
| !! | TGAAACTTCTTTTCAGGATC+AGG | - | chr1_1:6356352-6356371 | None:intergenic | 35.0% |
| !!! | GACTTCTGAAACTTCTTTTC+AGG | - | chr1_1:6356358-6356377 | None:intergenic | 35.0% |
| GAACGTACTTGACACAAATT+TGG | + | chr1_1:6356420-6356439 | Msa0003840:CDS | 35.0% | |
| AATCACTAACTTCATCTACG+GGG | - | chr1_1:6356702-6356721 | None:intergenic | 35.0% | |
| CAATCACTAACTTCATCTAC+GGG | - | chr1_1:6356703-6356722 | None:intergenic | 35.0% | |
| CTGTTTCAGCCATACTTAAA+AGG | + | chr1_1:6354745-6354764 | Msa0003840:intron | 35.0% | |
| !! | TGACTGGTTCCTTTTAAGTA+TGG | - | chr1_1:6354757-6354776 | None:intergenic | 35.0% |
| CTGAATAGTCTCTGACAAAT+TGG | - | chr1_1:6354853-6354872 | None:intergenic | 35.0% | |
| CAATTTGTCAGAGACTATTC+AGG | + | chr1_1:6354851-6354870 | Msa0003840:CDS | 35.0% | |
| !! | TTTGGAAAAATTTGGTGTGG+CGG | - | chr1_1:6354946-6354965 | None:intergenic | 35.0% |
| CCCTTATTAATTGTAGTCAG+TGG | - | chr1_1:6355329-6355348 | None:intergenic | 35.0% | |
| !! | TGACTAAGAGCACTACAATT+TGG | + | chr1_1:6355611-6355630 | Msa0003840:intron | 35.0% |
| ! | ATTTTCGGATTTCACTTAGG+TGG | - | chr1_1:6355886-6355905 | None:intergenic | 35.0% |
| AGAAAATAGGTCAGTTGTTC+CGG | - | chr1_1:6355960-6355979 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1_1:6356129-6356148 | Msa0003840:intron | 35.0% | |
| CCAAAGTAGGTCAATTAAAC+CGG | + | chr1_1:6356142-6356161 | Msa0003840:intron | 35.0% | |
| CAAAGTAGGTCAATTAAACC+GGG | + | chr1_1:6356143-6356162 | Msa0003840:intron | 35.0% | |
| !! | TGAAACTTCTTTTCAGGATC+AGG | - | chr1_1:6356352-6356371 | None:intergenic | 35.0% |
| !!! | GACTTCTGAAACTTCTTTTC+AGG | - | chr1_1:6356358-6356377 | None:intergenic | 35.0% |
| GAACGTACTTGACACAAATT+TGG | + | chr1_1:6356420-6356439 | Msa0003840:CDS | 35.0% | |
| AATCACTAACTTCATCTACG+GGG | - | chr1_1:6356702-6356721 | None:intergenic | 35.0% | |
| CAATCACTAACTTCATCTAC+GGG | - | chr1_1:6356703-6356722 | None:intergenic | 35.0% | |
| ! | AAAATGGGTTCTCTTATGGC+AGG | + | chr1_1:6354561-6354580 | Msa0003840:exon | 40.0% |
| !! | ATCCAACTTATGGTTTGGTG+TGG | + | chr1_1:6354917-6354936 | Msa0003840:intron | 40.0% |
| AAAGAAGAAGCAGACAGAGT+TGG | - | chr1_1:6355161-6355180 | None:intergenic | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | chr1_1:6355188-6355207 | None:intergenic | 40.0% | |
| TGACAATTATTGTGAGACGG+AGG | - | chr1_1:6355189-6355208 | None:intergenic | 40.0% | |
| GACTATTATTGTGAGACGGA+GGG | + | chr1_1:6355431-6355450 | Msa0003840:intron | 40.0% | |
| ATGTTTGTCGCGTCTCAAAT+AGG | - | chr1_1:6355734-6355753 | None:intergenic | 40.0% | |
| GAAAATAGGTCAGTTGTTCC+GGG | - | chr1_1:6355959-6355978 | None:intergenic | 40.0% | |
| CCGGTTTAATTGACCTACTT+TGG | - | chr1_1:6356145-6356164 | None:intergenic | 40.0% | |
| AAACTGTGCTGCATACTTGT+TGG | - | chr1_1:6356647-6356666 | None:intergenic | 40.0% | |
| ! | CAATTTTGTCGATCCCAAAC+TGG | - | chr1_1:6356677-6356696 | None:intergenic | 40.0% |
| CCAAAAACGAACAACGCTAT+TGG | - | chr1_1:6356809-6356828 | None:intergenic | 40.0% | |
| ! | CCAATAGCGTTGTTCGTTTT+TGG | + | chr1_1:6356806-6356825 | Msa0003840:three_prime_UTR | 40.0% |
| GCAAATCAACGTGTGTTTCT+TGG | + | chr1_1:6356871-6356890 | Msa0003840:three_prime_UTR | 40.0% | |
| ! | AAAATGGGTTCTCTTATGGC+AGG | + | chr1_1:6354561-6354580 | Msa0003840:exon | 40.0% |
| !! | ATCCAACTTATGGTTTGGTG+TGG | + | chr1_1:6354917-6354936 | Msa0003840:intron | 40.0% |
| AAAGAAGAAGCAGACAGAGT+TGG | - | chr1_1:6355161-6355180 | None:intergenic | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | chr1_1:6355188-6355207 | None:intergenic | 40.0% | |
| TGACAATTATTGTGAGACGG+AGG | - | chr1_1:6355189-6355208 | None:intergenic | 40.0% | |
| GACTATTATTGTGAGACGGA+GGG | + | chr1_1:6355431-6355450 | Msa0003840:intron | 40.0% | |
| ATGTTTGTCGCGTCTCAAAT+AGG | - | chr1_1:6355734-6355753 | None:intergenic | 40.0% | |
| GAAAATAGGTCAGTTGTTCC+GGG | - | chr1_1:6355959-6355978 | None:intergenic | 40.0% | |
| CCGGTTTAATTGACCTACTT+TGG | - | chr1_1:6356145-6356164 | None:intergenic | 40.0% | |
| AAACTGTGCTGCATACTTGT+TGG | - | chr1_1:6356647-6356666 | None:intergenic | 40.0% | |
| ! | CAATTTTGTCGATCCCAAAC+TGG | - | chr1_1:6356677-6356696 | None:intergenic | 40.0% |
| CCAAAAACGAACAACGCTAT+TGG | - | chr1_1:6356809-6356828 | None:intergenic | 40.0% | |
| ! | CCAATAGCGTTGTTCGTTTT+TGG | + | chr1_1:6356806-6356825 | Msa0003840:three_prime_UTR | 40.0% |
| GCAAATCAACGTGTGTTTCT+TGG | + | chr1_1:6356871-6356890 | Msa0003840:three_prime_UTR | 40.0% | |
| GGCAGATCCAACTTATGGTT+TGG | + | chr1_1:6354912-6354931 | Msa0003840:intron | 45.0% | |
| AGCCACACCAAACCATAAGT+TGG | - | chr1_1:6354922-6354941 | None:intergenic | 45.0% | |
| ! | AAGAAGCAGACAGAGTTGGT+GGG | - | chr1_1:6355157-6355176 | None:intergenic | 45.0% |
| AGGTTTGTGCGCGGTAATTA+AGG | - | chr1_1:6355406-6355425 | None:intergenic | 45.0% | |
| ! | AGTCGTTTAAGGTTTGTGCG+CGG | - | chr1_1:6355415-6355434 | None:intergenic | 45.0% |
| CGACTATTATTGTGAGACGG+AGG | + | chr1_1:6355430-6355449 | Msa0003840:intron | 45.0% | |
| GTAGGTCAATTAAACCGGGA+CGG | + | chr1_1:6356147-6356166 | Msa0003840:intron | 45.0% | |
| ATTAAAGGGGTCCCTTACGT+GGG | - | chr1_1:6356398-6356417 | None:intergenic | 45.0% | |
| TATTAAAGGGGTCCCTTACG+TGG | - | chr1_1:6356399-6356418 | None:intergenic | 45.0% | |
| !! | CAGGTGGACTAAGAGTAACT+GGG | + | chr1_1:6356585-6356604 | Msa0003840:intron | 45.0% |
| TCTGAATGAGCCACCAATGA+TGG | + | chr1_1:6356612-6356631 | Msa0003840:CDS | 45.0% | |
| TTGGATGCAGCTTCCATCAT+TGG | - | chr1_1:6356628-6356647 | None:intergenic | 45.0% | |
| ACAGTTTCACGTTGCCAGTT+TGG | + | chr1_1:6356660-6356679 | Msa0003840:CDS | 45.0% | |
| CAGTTTCACGTTGCCAGTTT+GGG | + | chr1_1:6356661-6356680 | Msa0003840:CDS | 45.0% | |
| GGCAGATCCAACTTATGGTT+TGG | + | chr1_1:6354912-6354931 | Msa0003840:intron | 45.0% | |
| AGCCACACCAAACCATAAGT+TGG | - | chr1_1:6354922-6354941 | None:intergenic | 45.0% | |
| ! | AAGAAGCAGACAGAGTTGGT+GGG | - | chr1_1:6355157-6355176 | None:intergenic | 45.0% |
| AGGTTTGTGCGCGGTAATTA+AGG | - | chr1_1:6355406-6355425 | None:intergenic | 45.0% | |
| ! | AGTCGTTTAAGGTTTGTGCG+CGG | - | chr1_1:6355415-6355434 | None:intergenic | 45.0% |
| CGACTATTATTGTGAGACGG+AGG | + | chr1_1:6355430-6355449 | Msa0003840:intron | 45.0% | |
| GTAGGTCAATTAAACCGGGA+CGG | + | chr1_1:6356147-6356166 | Msa0003840:intron | 45.0% | |
| ATTAAAGGGGTCCCTTACGT+GGG | - | chr1_1:6356398-6356417 | None:intergenic | 45.0% | |
| TATTAAAGGGGTCCCTTACG+TGG | - | chr1_1:6356399-6356418 | None:intergenic | 45.0% | |
| !! | CAGGTGGACTAAGAGTAACT+GGG | + | chr1_1:6356585-6356604 | Msa0003840:intron | 45.0% |
| TCTGAATGAGCCACCAATGA+TGG | + | chr1_1:6356612-6356631 | Msa0003840:CDS | 45.0% | |
| TTGGATGCAGCTTCCATCAT+TGG | - | chr1_1:6356628-6356647 | None:intergenic | 45.0% | |
| ACAGTTTCACGTTGCCAGTT+TGG | + | chr1_1:6356660-6356679 | Msa0003840:CDS | 45.0% | |
| CAGTTTCACGTTGCCAGTTT+GGG | + | chr1_1:6356661-6356680 | Msa0003840:CDS | 45.0% | |
| !!! | ATGTATTTTATTTATTTTTT+TGG | - | chr1_1:6354964-6354983 | None:intergenic | 5.0% |
| !!! | ATGTATTTTATTTATTTTTT+TGG | - | chr1_1:6354964-6354983 | None:intergenic | 5.0% |
| TGGGTTCTCTTATGGCAGGA+TGG | + | chr1_1:6354565-6354584 | Msa0003840:CDS | 50.0% | |
| GGGTTCTCTTATGGCAGGAT+GGG | + | chr1_1:6354566-6354585 | Msa0003840:CDS | 50.0% | |
| GGTTCTCTTATGGCAGGATG+GGG | + | chr1_1:6354567-6354586 | Msa0003840:CDS | 50.0% | |
| AACCTCTACTTGCCACCTTC+CGG | + | chr1_1:6354885-6354904 | Msa0003840:intron | 50.0% | |
| ! | TAAGTTGGATCTGCCCATGC+CGG | - | chr1_1:6354907-6354926 | None:intergenic | 50.0% |
| GCATGGGCAGATCCAACTTA+TGG | + | chr1_1:6354907-6354926 | Msa0003840:intron | 50.0% | |
| !! | AGAAGCAGACAGAGTTGGTG+GGG | - | chr1_1:6355156-6355175 | None:intergenic | 50.0% |
| GAAGAAGCAGACAGAGTTGG+TGG | - | chr1_1:6355158-6355177 | None:intergenic | 50.0% | |
| ATAGGTCAGTTGTTCCGGGA+CGG | - | chr1_1:6355955-6355974 | None:intergenic | 50.0% | |
| GTCAATTAAACCGGGACGGA+GGG | + | chr1_1:6356151-6356170 | Msa0003840:intron | 50.0% | |
| !! | GCAGGTGGACTAAGAGTAAC+TGG | + | chr1_1:6356584-6356603 | Msa0003840:intron | 50.0% |
| GATGCAGCTTCCATCATTGG+TGG | - | chr1_1:6356625-6356644 | None:intergenic | 50.0% | |
| TGGGTTCTCTTATGGCAGGA+TGG | + | chr1_1:6354565-6354584 | Msa0003840:CDS | 50.0% | |
| GGGTTCTCTTATGGCAGGAT+GGG | + | chr1_1:6354566-6354585 | Msa0003840:CDS | 50.0% | |
| GGTTCTCTTATGGCAGGATG+GGG | + | chr1_1:6354567-6354586 | Msa0003840:CDS | 50.0% | |
| AACCTCTACTTGCCACCTTC+CGG | + | chr1_1:6354885-6354904 | Msa0003840:intron | 50.0% | |
| ! | TAAGTTGGATCTGCCCATGC+CGG | - | chr1_1:6354907-6354926 | None:intergenic | 50.0% |
| GCATGGGCAGATCCAACTTA+TGG | + | chr1_1:6354907-6354926 | Msa0003840:intron | 50.0% | |
| !! | AGAAGCAGACAGAGTTGGTG+GGG | - | chr1_1:6355156-6355175 | None:intergenic | 50.0% |
| GAAGAAGCAGACAGAGTTGG+TGG | - | chr1_1:6355158-6355177 | None:intergenic | 50.0% | |
| ATAGGTCAGTTGTTCCGGGA+CGG | - | chr1_1:6355955-6355974 | None:intergenic | 50.0% | |
| GTCAATTAAACCGGGACGGA+GGG | + | chr1_1:6356151-6356170 | Msa0003840:intron | 50.0% | |
| !! | GCAGGTGGACTAAGAGTAAC+TGG | + | chr1_1:6356584-6356603 | Msa0003840:intron | 50.0% |
| GATGCAGCTTCCATCATTGG+TGG | - | chr1_1:6356625-6356644 | None:intergenic | 50.0% | |
| TACTTGCCACCTTCCGGCAT+GGG | + | chr1_1:6354891-6354910 | Msa0003840:intron | 55.0% | |
| GATGAATACTCCCTCCGTCC+CGG | + | chr1_1:6355938-6355957 | Msa0003840:intron | 55.0% | |
| GGTCAATTAAACCGGGACGG+AGG | + | chr1_1:6356150-6356169 | Msa0003840:intron | 55.0% | |
| GAAGTCAATGACCATGCCCG+TGG | + | chr1_1:6356372-6356391 | Msa0003840:CDS | 55.0% | |
| TACTTGCCACCTTCCGGCAT+GGG | + | chr1_1:6354891-6354910 | Msa0003840:intron | 55.0% | |
| GATGAATACTCCCTCCGTCC+CGG | + | chr1_1:6355938-6355957 | Msa0003840:intron | 55.0% | |
| GGTCAATTAAACCGGGACGG+AGG | + | chr1_1:6356150-6356169 | Msa0003840:intron | 55.0% | |
| GAAGTCAATGACCATGCCCG+TGG | + | chr1_1:6356372-6356391 | Msa0003840:CDS | 55.0% | |
| TGCCGGAAGGTGGCAAGTAG+AGG | - | chr1_1:6354890-6354909 | None:intergenic | 60.0% | |
| CTACTTGCCACCTTCCGGCA+TGG | + | chr1_1:6354890-6354909 | Msa0003840:intron | 60.0% | |
| TTGGATCTGCCCATGCCGGA+AGG | - | chr1_1:6354903-6354922 | None:intergenic | 60.0% | |
| GTCAGTTGTTCCGGGACGGA+GGG | - | chr1_1:6355951-6355970 | None:intergenic | 60.0% | |
| GTCTTGTACTCCCTCCGTCC+CGG | - | chr1_1:6356164-6356183 | None:intergenic | 60.0% | |
| TGCCGGAAGGTGGCAAGTAG+AGG | - | chr1_1:6354890-6354909 | None:intergenic | 60.0% | |
| CTACTTGCCACCTTCCGGCA+TGG | + | chr1_1:6354890-6354909 | Msa0003840:intron | 60.0% | |
| TTGGATCTGCCCATGCCGGA+AGG | - | chr1_1:6354903-6354922 | None:intergenic | 60.0% | |
| GTCAGTTGTTCCGGGACGGA+GGG | - | chr1_1:6355951-6355970 | None:intergenic | 60.0% | |
| GTCTTGTACTCCCTCCGTCC+CGG | - | chr1_1:6356164-6356183 | None:intergenic | 60.0% | |
| GATCTGCCCATGCCGGAAGG+TGG | - | chr1_1:6354900-6354919 | None:intergenic | 65.0% | |
| GGTCAGTTGTTCCGGGACGG+AGG | - | chr1_1:6355952-6355971 | None:intergenic | 65.0% | |
| CATGCCCGTGGCCCACGTAA+GGG | + | chr1_1:6356384-6356403 | Msa0003840:CDS | 65.0% | |
| GATCTGCCCATGCCGGAAGG+TGG | - | chr1_1:6354900-6354919 | None:intergenic | 65.0% | |
| GGTCAGTTGTTCCGGGACGG+AGG | - | chr1_1:6355952-6355971 | None:intergenic | 65.0% | |
| CATGCCCGTGGCCCACGTAA+GGG | + | chr1_1:6356384-6356403 | Msa0003840:CDS | 65.0% | |
| CCTTACGTGGGCCACGGGCA+TGG | - | chr1_1:6356386-6356405 | None:intergenic | 70.0% | |
| CCATGCCCGTGGCCCACGTA+AGG | + | chr1_1:6356383-6356402 | Msa0003840:CDS | 70.0% | |
| GGGTCCCTTACGTGGGCCAC+GGG | - | chr1_1:6356391-6356410 | None:intergenic | 70.0% | |
| GGGGTCCCTTACGTGGGCCA+CGG | - | chr1_1:6356392-6356411 | None:intergenic | 70.0% | |
| CCTTACGTGGGCCACGGGCA+TGG | - | chr1_1:6356386-6356405 | None:intergenic | 70.0% | |
| CCATGCCCGTGGCCCACGTA+AGG | + | chr1_1:6356383-6356402 | Msa0003840:CDS | 70.0% | |
| GGGTCCCTTACGTGGGCCAC+GGG | - | chr1_1:6356391-6356410 | None:intergenic | 70.0% | |
| GGGGTCCCTTACGTGGGCCA+CGG | - | chr1_1:6356392-6356411 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6354500 | 6356936 | 6354500 | ID=Msa0003840;Name=Msa0003840 |
| chr1_1 | mRNA | 6354500 | 6356936 | 6354500 | ID=Msa0003840-mRNA-1;Parent=Msa0003840;Name=Msa0003840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=64|1|1|1|1|1|4|213|141 |
| chr1_1 | exon | 6354500 | 6354615 | 6354500 | ID=Msa0003840-mRNA-1:exon:2074;Parent=Msa0003840-mRNA-1 |
| chr1_1 | exon | 6354754 | 6354872 | 6354754 | ID=Msa0003840-mRNA-1:exon:2075;Parent=Msa0003840-mRNA-1 |
| chr1_1 | exon | 6356349 | 6356467 | 6356349 | ID=Msa0003840-mRNA-1:exon:2076;Parent=Msa0003840-mRNA-1 |
| chr1_1 | exon | 6356588 | 6356936 | 6356588 | ID=Msa0003840-mRNA-1:exon:2077;Parent=Msa0003840-mRNA-1 |
| chr1_1 | five_prime_UTR | 6354500 | 6354563 | 6354500 | ID=Msa0003840-mRNA-1:five_prime_utr;Parent=Msa0003840-mRNA-1 |
| chr1_1 | CDS | 6354564 | 6354615 | 6354564 | ID=Msa0003840-mRNA-1:cds;Parent=Msa0003840-mRNA-1 |
| chr1_1 | CDS | 6354754 | 6354872 | 6354754 | ID=Msa0003840-mRNA-1:cds;Parent=Msa0003840-mRNA-1 |
| chr1_1 | CDS | 6356349 | 6356467 | 6356349 | ID=Msa0003840-mRNA-1:cds;Parent=Msa0003840-mRNA-1 |
| chr1_1 | CDS | 6356588 | 6356723 | 6356588 | ID=Msa0003840-mRNA-1:cds;Parent=Msa0003840-mRNA-1 |
| chr1_1 | three_prime_UTR | 6356724 | 6356936 | 6356724 | ID=Msa0003840-mRNA-1:three_prime_utr;Parent=Msa0003840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
