AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0812050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812050 MtrunA17_Chr5g0434001 98.992 595 6 0 1 595 13 607 0.0 1217
Msa0812050 MtrunA17_Chr8g0375501 77.397 584 131 1 12 595 9 591 0.0 936
Msa0812050 MtrunA17_Chr6g0480551 77.002 587 133 1 9 595 4 588 0.0 932
Msa0812050 MtrunA17_Chr4g0026371 49.126 572 287 2 24 595 22 589 0.0 566
Msa0812050 MtrunA17_Chr8g0380651 41.349 578 321 7 26 595 22 589 6.16e-151 447
Msa0812050 MtrunA17_Chr2g0277491 41.941 577 317 8 26 595 18 583 1.81e-150 446
Msa0812050 MtrunA17_Chr8g0342031 32.761 641 377 9 3 595 14 648 1.29e-115 358
Msa0812050 MtrunA17_Chr1g0150181 32.508 646 376 11 1 595 1 637 6.84e-111 345
Msa0812050 MtrunA17_Chr3g0136881 32.237 608 359 8 35 595 35 636 2.27e-106 333
Msa0812050 MtrunA17_Chr4g0065301 27.760 634 380 15 31 595 32 656 7.48e-80 265
Msa0812050 MtrunA17_Chr5g0448371 27.151 674 401 16 1 595 3 665 3.16e-75 252
Msa0812050 MtrunA17_Chr3g0120461 30.023 433 284 8 171 595 238 659 3.85e-62 217
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812050 AT2G01970.1 77.509 578 129 1 18 595 16 592 0.0 930
Msa0812050 AT5G37310.1 76.531 588 137 1 8 595 7 593 0.0 927
Msa0812050 AT5G37310.2 76.531 588 137 1 8 595 7 593 0.0 927
Msa0812050 AT1G14670.1 77.143 595 133 2 1 595 1 592 0.0 919
Msa0812050 AT1G08350.3 48.048 589 301 4 8 595 5 589 0.0 579
Msa0812050 AT1G08350.2 48.048 589 301 4 8 595 5 589 0.0 579
Msa0812050 AT1G08350.1 47.535 507 262 3 90 595 5 508 1.10e-170 495
Msa0812050 AT1G08350.4 44.917 541 284 4 8 547 5 532 1.05e-168 491
Msa0812050 AT1G10950.1 40.663 573 324 7 29 595 27 589 1.80e-144 431
Msa0812050 AT3G13772.1 33.117 616 347 8 33 595 38 641 1.31e-115 358
Msa0812050 AT1G55130.1 33.117 616 347 9 33 595 34 637 2.90e-112 349
Msa0812050 AT5G10840.1 31.513 641 385 8 3 595 14 648 8.11e-108 338
Msa0812050 AT5G25100.1 30.901 644 389 8 2 595 7 644 1.90e-106 334
Msa0812050 AT2G24170.1 32.709 587 343 7 56 595 56 637 3.08e-105 331
Msa0812050 AT5G25100.2 31.967 610 359 8 36 595 48 651 2.12e-104 329
Msa0812050 AT5G35160.1 31.504 419 269 7 186 595 221 630 8.02e-64 221
Msa0812050 AT5G35160.2 31.504 419 269 7 186 595 249 658 1.03e-63 221
Msa0812050 AT5G35160.3 31.504 419 269 7 186 595 249 658 1.03e-63 221
Msa0812050 AT5G35160.4 31.504 419 269 7 186 595 249 658 1.03e-63 221
Msa0812050 AT4G12650.1 30.318 409 268 7 195 595 253 652 4.51e-60 211
Msa0812050 AT2G24170.2 29.008 393 228 6 56 401 56 444 3.93e-52 185

Find 122 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTAACCTCACCTTTAT+TGG 0.159809 5_3:+41879540 Msa0812050:CDS
TTCCTTTGTGGTGGATCAAC+TGG 0.175262 5_3:+41880354 Msa0812050:CDS
ATTAAGCAGTGATAGAAATT+TGG 0.227532 5_3:-41880690 None:intergenic
ACTATGATGACTTGCCAATT+TGG 0.269300 5_3:+41877705 Msa0812050:CDS
ACCTCACCTTTATTGGTATT+GGG 0.275560 5_3:+41879547 Msa0812050:CDS
TCAACTGGGTTGTTCATATA+TGG 0.277084 5_3:+41880369 Msa0812050:CDS
AACCTCACCTTTATTGGTAT+TGG 0.284277 5_3:+41879546 Msa0812050:CDS
TGCATTTCAGGTGAAAATTT+TGG 0.287409 5_3:+41879387 Msa0812050:intron
ACTTCCATCCAGTCTCTTCT+TGG 0.288713 5_3:-41878375 None:intergenic
TTGGTATTGGGTGGGATTGC+TGG 0.299301 5_3:+41879559 Msa0812050:CDS
CTATGATGACTTGCCAATTT+GGG 0.300228 5_3:+41877706 Msa0812050:CDS
GTAGTAGAGTTCAATGAAAA+TGG 0.321529 5_3:-41879710 None:intergenic
GATATTAGGTCTTTCCTTTG+TGG 0.336277 5_3:+41880342 Msa0812050:intron
AATGAACAAAATGCTGTATA+TGG 0.340162 5_3:-41879767 None:intergenic
CCCTTCAATCATGTAATAGA+AGG 0.351238 5_3:-41878994 None:intergenic
TTACGGTACCAAGGTAGTTT+AGG 0.351664 5_3:-41879643 None:intergenic
AGCATCACATTCATAGCTTC+AGG 0.355880 5_3:+41880791 Msa0812050:three_prime_UTR
ATCCTCACTCTCACATCATT+TGG 0.357975 5_3:+41877982 Msa0812050:CDS
CTTCCAAGGAAACCCCAAAT+TGG 0.359340 5_3:-41877719 None:intergenic
ATATTTATGCTTGCTCTAGT+TGG 0.366853 5_3:+41878879 Msa0812050:CDS
TATGGTTTCTTTCTTATGCT+TGG 0.371120 5_3:+41880480 Msa0812050:CDS
TCATCAAGTGCCTCTTCATC+TGG 0.382938 5_3:-41878352 None:intergenic
TAGTGCTGCAGTGGAGTTAT+AGG 0.383154 5_3:-41879479 None:intergenic
ATCAAGAATTCAAGTTTGTA+AGG 0.385654 5_3:-41877584 None:intergenic
ATCCCACCCAATACCAATAA+AGG 0.387694 5_3:-41879553 None:intergenic
CAGATATTCCATTTGAGAAA+AGG 0.390734 5_3:+41877939 Msa0812050:CDS
TTGCCAATTTGGGGTTTCCT+TGG 0.391409 5_3:+41877716 Msa0812050:CDS
ATTTCACATATTCTGTCAAA+TGG 0.396091 5_3:+41877909 Msa0812050:CDS
TTCGCCGCAGCACTTGGAAC+AGG 0.404698 5_3:+41878442 Msa0812050:CDS
CCCACCTTGTTTGCATAAAA+CGG 0.409711 5_3:-41876341 None:intergenic
AAACTAACCTGGCGAACAAA+AGG 0.410391 5_3:-41877397 None:intergenic
GGAAAAGTCAACGACGTGTT+TGG 0.417598 5_3:+41876226 Msa0812050:CDS
GCGAACAAAGACTTAAATCT+TGG 0.421824 5_3:-41878424 None:intergenic
CACATCATTTGGAAATCCAT+TGG 0.423796 5_3:+41877993 Msa0812050:CDS
GAAGGAAGCTGCAGAATAAC+CGG 0.424677 5_3:-41878976 None:intergenic
TCCACTGCAGCACTACCCTT+TGG 0.427646 5_3:+41879487 Msa0812050:CDS
AACAAAGCTCCCCTGTTGTA+TGG 0.432106 5_3:-41878912 None:intergenic
GCATTAACGTCCGGCATTGC+CGG 0.432563 5_3:+41878957 Msa0812050:CDS
TCCTTCTATTACATGATTGA+AGG 0.433770 5_3:+41878993 Msa0812050:CDS
CAGCAAAATCTCATTGCAAA+TGG 0.434387 5_3:+41880629 Msa0812050:three_prime_UTR
GGGAGCTTTGTTTACTGCAC+TGG 0.435481 5_3:+41878923 Msa0812050:CDS
CCGTAAAACTCTTCCTCAAA+TGG 0.437640 5_3:+41879660 Msa0812050:CDS
TCTGAGCTATTCACACTTGA+GGG 0.440042 5_3:-41880553 None:intergenic
TTTCTTATGCTTGGAACTGT+GGG 0.441101 5_3:+41880489 Msa0812050:CDS
GTCAAGTCCACAACAGCATT+CGG 0.447696 5_3:-41877863 None:intergenic
AATCTCCCTCGGATACTTGT+TGG 0.451259 5_3:-41879620 None:intergenic
CACCTTTATTGGTATTGGGT+GGG 0.453576 5_3:+41879551 Msa0812050:CDS
CATCAGTTTCAAATCTTCCA+AGG 0.455164 5_3:-41877733 None:intergenic
CTTTCTTATGCTTGGAACTG+TGG 0.458480 5_3:+41880488 Msa0812050:CDS
GGTTTACTGAAGAGTAGTAT+AGG 0.458814 5_3:+41880650 Msa0812050:three_prime_UTR
GAGAATCATGGCAAGGAATC+CGG 0.464820 5_3:-41878056 None:intergenic
GAAGAAAAGAAAGAAGATCT+TGG 0.467281 5_3:+41877527 Msa0812050:CDS
TCTTTGTTCGCCGCAGCACT+TGG 0.467861 5_3:+41878436 Msa0812050:CDS
GTTACTGTTCTTCTCTTGAC+CGG 0.473664 5_3:+41878037 Msa0812050:CDS
ATTAGGTCTTTCCTTTGTGG+TGG 0.477997 5_3:+41880345 Msa0812050:intron
ATCTAACCTGGGATTATGAA+AGG 0.482130 5_3:-41876366 None:intergenic
TCCTTTGTGGTGGATCAACT+GGG 0.485374 5_3:+41880355 Msa0812050:CDS
TACATGGCTTGCATTTGCTA+TGG 0.488624 5_3:+41880462 Msa0812050:CDS
TGCAGAATAACCGGCAATGC+CGG 0.490602 5_3:-41878967 None:intergenic
TTTATTGAATGCAGAAAATG+TGG 0.491207 5_3:+41877505 Msa0812050:intron
ACTACATATTTGCCAGTGTG+TGG 0.492038 5_3:+41879728 Msa0812050:CDS
CATGCAAGATCAGATATGTC+TGG 0.493757 5_3:+41880411 Msa0812050:CDS
AACTCTTCCTCAAATGGCTA+TGG 0.495729 5_3:+41879666 Msa0812050:CDS
TTTATTTGAAATTATAGAAG+AGG 0.496168 5_3:+41880764 Msa0812050:three_prime_UTR
TTAACTGGTAGTCTATTCTC+TGG 0.501357 5_3:+41879412 Msa0812050:CDS
CTACATATTTGCCAGTGTGT+GGG 0.507683 5_3:+41879729 Msa0812050:CDS
CTTCCTCAAATGGCTATGGC+TGG 0.509056 5_3:+41879670 Msa0812050:CDS
TCAGATCATCGTTATAAAGA+AGG 0.510924 5_3:+41876308 Msa0812050:CDS
AATCCAGCCATAGCCATTTG+AGG 0.511166 5_3:-41879673 None:intergenic
AGAAGATAGAGAGGTAAATG+TGG 0.520334 5_3:+41877886 Msa0812050:CDS
TATTCCATTTGAGAAAAGGT+TGG 0.520532 5_3:+41877943 Msa0812050:CDS
TGGGACCCTTTCATAATCCC+AGG 0.520558 5_3:+41876360 Msa0812050:CDS
AAGTACGCGCATGAGAATCA+TGG 0.523656 5_3:-41878068 None:intergenic
CCTTCTATTACATGATTGAA+GGG 0.526700 5_3:+41878994 Msa0812050:CDS
GTCATATACGCATTAACGTC+CGG 0.529722 5_3:+41878948 Msa0812050:CDS
TTCTGAGCTATTCACACTTG+AGG 0.535196 5_3:-41880554 None:intergenic
TCACCTTTATTGGTATTGGG+TGG 0.535989 5_3:+41879550 Msa0812050:CDS
AATAACCACAATTGTTCCAA+AGG 0.538698 5_3:-41879503 None:intergenic
AAGGTGCTTGAAACTCTGAT+TGG 0.544875 5_3:-41879591 None:intergenic
ATAGCTCAGAAGAAGCTCAC+TGG 0.546157 5_3:+41880566 Msa0812050:exon
TCTAACCTGGGATTATGAAA+GGG 0.548279 5_3:-41876365 None:intergenic
AACTAACCTGGCGAACAAAA+GGG 0.550195 5_3:-41877396 None:intergenic
TACATATTTGCCAGTGTGTG+GGG 0.552002 5_3:+41879730 Msa0812050:CDS
TCAATGAAAATGGCACTGAA+TGG 0.553149 5_3:-41879700 None:intergenic
CTTGATGACCAAGAAGAGAC+TGG 0.553949 5_3:+41878367 Msa0812050:CDS
AAAGATGCTGACAAGAAAAG+AGG 0.554105 5_3:+41877634 Msa0812050:CDS
ATACTTTCAACTTGCTGCTG+AGG 0.554818 5_3:+41879840 Msa0812050:CDS
CTGAGGATCATGAATGGTGG+TGG 0.559393 5_3:+41879857 Msa0812050:CDS
ACAGAGTAAAACAAAGCGCC+TGG 0.561428 5_3:-41880595 None:intergenic
TCCAAAGGGTAGTGCTGCAG+TGG 0.561479 5_3:-41879488 None:intergenic
ACTACCCTTTGGAACAATTG+TGG 0.569004 5_3:+41879498 Msa0812050:CDS
ACTTGAGGGAACGGTATATG+TGG 0.569759 5_3:-41880539 None:intergenic
TATGATGACTTGCCAATTTG+GGG 0.574034 5_3:+41877707 Msa0812050:CDS
AAATGATCCGAATGCTGTTG+TGG 0.575333 5_3:+41877856 Msa0812050:CDS
ATAACCACAATTGTTCCAAA+GGG 0.579246 5_3:-41879502 None:intergenic
GGATACTTGTTGGTTCGACA+AGG 0.582998 5_3:-41879610 None:intergenic
ATGACCAAGAAGAGACTGGA+TGG 0.583101 5_3:+41878371 Msa0812050:CDS
AAAAGATGTTGACACAAATG+AGG 0.586558 5_3:+41877757 Msa0812050:CDS
AGTTAATAATAGAAAACCAA+TGG 0.587731 5_3:-41878009 None:intergenic
GACATTCAGCTTTCTTAACA+CGG 0.594648 5_3:+41879447 Msa0812050:CDS
TAGGTTTACACCAGATGAAG+AGG 0.600920 5_3:+41878342 Msa0812050:intron
GGGAGATTCCTAAACTACCT+TGG 0.601031 5_3:+41879635 Msa0812050:CDS
TTGCTGCTGAGGATCATGAA+TGG 0.608218 5_3:+41879851 Msa0812050:CDS
CAGACATATCTGATCTTGCA+TGG 0.613786 5_3:-41880410 None:intergenic
GCTATTCACACTTGAGGGAA+CGG 0.614276 5_3:-41880548 None:intergenic
CGCGCATGAGAATCATGGCA+AGG 0.619445 5_3:-41878063 None:intergenic
CTGCTGAGGATCATGAATGG+TGG 0.620026 5_3:+41879854 Msa0812050:CDS
ACTGGATGGAAGTATATCCA+TGG 0.622758 5_3:+41878385 Msa0812050:CDS
GTCGAACCAACAAGTATCCG+AGG 0.624487 5_3:+41879614 Msa0812050:CDS
AATCTGATGACCCCACACAC+TGG 0.627045 5_3:-41879740 None:intergenic
AGGATCATGAATGGTGGTGG+AGG 0.635786 5_3:+41879860 Msa0812050:CDS
GGACTTGACAGAAGATAGAG+AGG 0.642544 5_3:+41877877 Msa0812050:CDS
TTATACAGCAGAAACAACAT+AGG 0.656465 5_3:-41876265 None:intergenic
GATATCTAAACACATCACCA+TGG 0.657708 5_3:-41878402 None:intergenic
GAAGCTCACTGGAATAAACC+AGG 0.661450 5_3:+41880577 Msa0812050:three_prime_UTR
GGTAGTTTAGGAATCTCCCT+CGG 0.664868 5_3:-41879631 None:intergenic
ACCCAATACCAATAAAGGTG+AGG 0.665590 5_3:-41879548 None:intergenic
TTCCAAATGATGTGAGAGTG+AGG 0.670818 5_3:-41877984 None:intergenic
TCGAACCAACAAGTATCCGA+GGG 0.672144 5_3:+41879615 Msa0812050:CDS
ACCCAGTTGATCCACCACAA+AGG 0.682810 5_3:-41880356 None:intergenic
AGTGCCTGTTCCAAGTGCTG+CGG 0.689872 5_3:-41878446 None:intergenic
GAAACAACATAGGATCACAA+TGG 0.705943 5_3:-41876255 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATCAAAATATATTTTAAAA+GGG - chr5_3:41876418-41876437 None:intergenic 10.0%
!!! AGATCAAAATATATTTTAAA+AGG - chr5_3:41876419-41876438 None:intergenic 10.0%
!!! TTTTTTTCAAAAGTATAAAT+TGG - chr5_3:41876452-41876471 None:intergenic 10.0%
!! TGAAAAAAATATGAAAAAAT+TGG + chr5_3:41876463-41876482 Msa0812050:intron 10.0%
!! GAAAAAAATATGAAAAAATT+GGG + chr5_3:41876464-41876483 Msa0812050:intron 10.0%
!!! ATTAAATAGTATAATTTTTG+TGG + chr5_3:41877059-41877078 Msa0812050:intron 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG - chr5_3:41878663-41878682 None:intergenic 10.0%
!!! TGAAAAAAATATCAATTTTA+TGG + chr5_3:41879947-41879966 Msa0812050:intron 10.0%
!!! GAAAAAAATATCAATTTTAT+GGG + chr5_3:41879948-41879967 Msa0812050:intron 10.0%
!! AAATAAAAATAAAAGTTGTT+AGG - chr5_3:41880751-41880770 None:intergenic 10.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr5_3:41878560-41878579 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr5_3:41878687-41878706 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr5_3:41878686-41878705 Msa0812050:intron 15.0%
!! AAATGACAAGTTATAAAATA+TGG - chr5_3:41880314-41880333 None:intergenic 15.0%
!!! TTTATTTGAAATTATAGAAG+AGG + chr5_3:41880764-41880783 Msa0812050:three_prime_UTR 15.0%
!!! TTTTCAAAAGTATAAATTGG+AGG - chr5_3:41876449-41876468 None:intergenic 20.0%
!!! AGACAGTAATAGAAAATTTT+GGG - chr5_3:41877447-41877466 None:intergenic 20.0%
!!! AAGACAGTAATAGAAAATTT+TGG - chr5_3:41877448-41877467 None:intergenic 20.0%
!!! CAATAAATTTTGGAACTATA+AGG - chr5_3:41877492-41877511 None:intergenic 20.0%
!!! TTTCTGCATTCAATAAATTT+TGG - chr5_3:41877502-41877521 None:intergenic 20.0%
!! AGTTAATAATAGAAAACCAA+TGG - chr5_3:41878012-41878031 None:intergenic 20.0%
!! ATTTATTTATCTCAGTAGTA+TGG + chr5_3:41878122-41878141 Msa0812050:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr5_3:41878600-41878619 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr5_3:41878677-41878696 Msa0812050:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr5_3:41878720-41878739 None:intergenic 20.0%
!!! TTGTGGTTATTTTCTTAATA+TGG + chr5_3:41879515-41879534 Msa0812050:CDS 20.0%
!! TAGTTTATTCATCAGAATTT+AGG + chr5_3:41879921-41879940 Msa0812050:intron 20.0%
!! TTGAAAACTATTATTAGATC+AGG - chr5_3:41880025-41880044 None:intergenic 20.0%
!!! GTCATTTTCTTAAAAATATG+TGG - chr5_3:41880238-41880257 None:intergenic 20.0%
!!! TCATTTTTCTACATGATATT+AGG + chr5_3:41880328-41880347 Msa0812050:intron 20.0%
! AAGCATTAAAAATCTAACCT+GGG - chr5_3:41876380-41876399 None:intergenic 25.0%
!! AAAGCATTAAAAATCTAACC+TGG - chr5_3:41876381-41876400 None:intergenic 25.0%
!! GTAATGGAATGAAATCTTAA+TGG + chr5_3:41876521-41876540 Msa0812050:intron 25.0%
! TTAGTGCTTCAATAAAATCA+TGG + chr5_3:41876616-41876635 Msa0812050:intron 25.0%
! TTTATTGTCAAGATAAGCTA+TGG - chr5_3:41876907-41876926 None:intergenic 25.0%
! TTGACAATAAATTATTGCTC+TGG + chr5_3:41876916-41876935 Msa0812050:intron 25.0%
! AATGAACACACTTCAATATA+AGG - chr5_3:41876999-41877018 None:intergenic 25.0%
! TCAGTTAAAGATGAATTGTT+CGG - chr5_3:41877188-41877207 None:intergenic 25.0%
! ATCAAGAATTTCTTCCTAAA+TGG + chr5_3:41877300-41877319 Msa0812050:intron 25.0%
! TATTAACAAAGTAGCCATTT+AGG - chr5_3:41877317-41877336 None:intergenic 25.0%
! TTTATTGAATGCAGAAAATG+TGG + chr5_3:41877505-41877524 Msa0812050:intron 25.0%
!! ATCAAGAATTCAAGTTTGTA+AGG - chr5_3:41877587-41877606 None:intergenic 25.0%
! ATTCCTAAAAAGATAAACTG+TGG - chr5_3:41877783-41877802 None:intergenic 25.0%
! ATTTCACATATTCTGTCAAA+TGG + chr5_3:41877909-41877928 Msa0812050:CDS 25.0%
!! CCTATCGTAATATTTTGTTA+TGG - chr5_3:41878326-41878345 None:intergenic 25.0%
! CCATAACAAAATATTACGAT+AGG + chr5_3:41878323-41878342 Msa0812050:intron 25.0%
! GAACCTAAATAAGTAGTAAA+AGG - chr5_3:41879083-41879102 None:intergenic 25.0%
! AAAAACAACTGGAAAAAGAA+AGG - chr5_3:41879294-41879313 None:intergenic 25.0%
! ATTACTTTCAATCGTGTTAA+AGG - chr5_3:41879317-41879336 None:intergenic 25.0%
! AATGAACAAAATGCTGTATA+TGG - chr5_3:41879770-41879789 None:intergenic 25.0%
!! TCTAAAAAGTAGAGGTATAA+GGG + chr5_3:41880175-41880194 Msa0812050:intron 25.0%
!! ATGCAAACTTCTTTCTTTTT+CGG + chr5_3:41880438-41880457 Msa0812050:CDS 25.0%
! ATTAAGCAGTGATAGAAATT+TGG - chr5_3:41880693-41880712 None:intergenic 25.0%
TTATACAGCAGAAACAACAT+AGG - chr5_3:41876268-41876287 None:intergenic 30.0%
TCAGATCATCGTTATAAAGA+AGG + chr5_3:41876308-41876327 Msa0812050:CDS 30.0%
TTCATTCCATTACAGAATTC+TGG - chr5_3:41876514-41876533 None:intergenic 30.0%
ATGGAATGAAATCTTAATGG+TGG + chr5_3:41876524-41876543 Msa0812050:intron 30.0%
CAAATTACGACAGGTAAATT+TGG - chr5_3:41876658-41876677 None:intergenic 30.0%
CAAATTTACCTGTCGTAATT+TGG + chr5_3:41876656-41876675 Msa0812050:intron 30.0%
!! CTTTTATCTTTGCCATTTGA+TGG + chr5_3:41876954-41876973 Msa0812050:intron 30.0%
CAGTTAAAGATGAATTGTTC+GGG - chr5_3:41877187-41877206 None:intergenic 30.0%
! CTTGGTTGGTTAAATCTAAA+TGG + chr5_3:41877235-41877254 Msa0812050:intron 30.0%
GAAGAAAAGAAAGAAGATCT+TGG + chr5_3:41877527-41877546 Msa0812050:CDS 30.0%
AAAAGATGTTGACACAAATG+AGG + chr5_3:41877757-41877776 Msa0812050:CDS 30.0%
CAGATATTCCATTTGAGAAA+AGG + chr5_3:41877939-41877958 Msa0812050:CDS 30.0%
TATTCCATTTGAGAAAAGGT+TGG + chr5_3:41877943-41877962 Msa0812050:CDS 30.0%
ATGAAAATAGCTCGAAATTG+TGG - chr5_3:41878262-41878281 None:intergenic 30.0%
! TTAGACCATTTACTAGTTTG+TGG + chr5_3:41878286-41878305 Msa0812050:intron 30.0%
AAGTTCCACAAACTAGTAAA+TGG - chr5_3:41878294-41878313 None:intergenic 30.0%
! TTACCTTCTCAAAGTACTAA+TGG + chr5_3:41878492-41878511 Msa0812050:intron 30.0%
! ATACCATTAGTACTTTGAGA+AGG - chr5_3:41878498-41878517 None:intergenic 30.0%
!! AAGCAACACTCATTTTGAAA+CGG - chr5_3:41878534-41878553 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr5_3:41878768-41878787 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr5_3:41878769-41878788 Msa0812050:intron 30.0%
! CTCTTTTGTGACTATATACT+TGG + chr5_3:41878832-41878851 Msa0812050:intron 30.0%
ATATTTATGCTTGCTCTAGT+TGG + chr5_3:41878879-41878898 Msa0812050:CDS 30.0%
! TGTTTTCTATCCATACAACA+GGG + chr5_3:41878902-41878921 Msa0812050:CDS 30.0%
TCCTTCTATTACATGATTGA+AGG + chr5_3:41878993-41879012 Msa0812050:CDS 30.0%
CCTTCTATTACATGATTGAA+GGG + chr5_3:41878994-41879013 Msa0812050:CDS 30.0%
ACATGATTGAAGGGAAAAAT+TGG + chr5_3:41879003-41879022 Msa0812050:CDS 30.0%
CATGATTGAAGGGAAAAATT+GGG + chr5_3:41879004-41879023 Msa0812050:CDS 30.0%
CTAAATAAGTAGTAAAAGGC+AGG - chr5_3:41879079-41879098 None:intergenic 30.0%
! CTGCCTTTTACTACTTATTT+AGG + chr5_3:41879077-41879096 Msa0812050:intron 30.0%
CTAAGTCATTGGATAAAGAT+CGG + chr5_3:41879159-41879178 Msa0812050:intron 30.0%
GGATTACACTTATCAAGTAT+TGG + chr5_3:41879359-41879378 Msa0812050:intron 30.0%
!! TGCATTTCAGGTGAAAATTT+TGG + chr5_3:41879387-41879406 Msa0812050:intron 30.0%
!!! GTGAAAATTTTGGTGTTAAC+TGG + chr5_3:41879397-41879416 Msa0812050:CDS 30.0%
AAGCTGAATGTCAAAAACAA+TGG - chr5_3:41879439-41879458 None:intergenic 30.0%
ATAACCACAATTGTTCCAAA+GGG - chr5_3:41879505-41879524 None:intergenic 30.0%
AATAACCACAATTGTTCCAA+AGG - chr5_3:41879506-41879525 None:intergenic 30.0%
GTAGTAGAGTTCAATGAAAA+TGG - chr5_3:41879713-41879732 None:intergenic 30.0%
AAAACTATTTATGCATGCCA+AGG - chr5_3:41880001-41880020 None:intergenic 30.0%
GAGAGATTAGATGAATTAAG+AGG - chr5_3:41880127-41880146 None:intergenic 30.0%
TCATCTAATCTCTCAATTGT+TGG + chr5_3:41880133-41880152 Msa0812050:intron 30.0%
CAATTGTTGGATGAATTTAG+TGG + chr5_3:41880146-41880165 Msa0812050:intron 30.0%
!!! CTTATACCTCTACTTTTTAG+AGG - chr5_3:41880176-41880195 None:intergenic 30.0%
! CTCTAAAAAGTAGAGGTATA+AGG + chr5_3:41880174-41880193 Msa0812050:intron 30.0%
! CTAAAAAGTAGAGGTATAAG+GGG + chr5_3:41880176-41880195 Msa0812050:intron 30.0%
TATGGTTTCTTTCTTATGCT+TGG + chr5_3:41880480-41880499 Msa0812050:CDS 30.0%
GAAACAACATAGGATCACAA+TGG - chr5_3:41876258-41876277 None:intergenic 35.0%
! TGTACCGTTTTATGCAAACA+AGG + chr5_3:41876337-41876356 Msa0812050:CDS 35.0%
TCTAACCTGGGATTATGAAA+GGG - chr5_3:41876368-41876387 None:intergenic 35.0%
ATCTAACCTGGGATTATGAA+AGG - chr5_3:41876369-41876388 None:intergenic 35.0%
!!! AATTGGGTTGTGTCATTTTG+AGG + chr5_3:41876480-41876499 Msa0812050:intron 35.0%
ACCATTCCAGAATTCTGTAA+TGG + chr5_3:41876505-41876524 Msa0812050:intron 35.0%
! TCCATTACAGAATTCTGGAA+TGG - chr5_3:41876509-41876528 None:intergenic 35.0%
!! AATCTTAATGGTGGATGAAG+AGG + chr5_3:41876533-41876552 Msa0812050:intron 35.0%
ACACATAACCAAATTACGAC+AGG - chr5_3:41876667-41876686 None:intergenic 35.0%
! TATCTTTGCCATTTGATGGT+AGG + chr5_3:41876958-41876977 Msa0812050:intron 35.0%
! ATCTTCACCCGAACAATTTT+TGG - chr5_3:41877149-41877168 None:intergenic 35.0%
AGCACTTGAGTTTAATCACT+TGG + chr5_3:41877217-41877236 Msa0812050:intron 35.0%
CTTGAGTTTAATCACTTGGT+TGG + chr5_3:41877221-41877240 Msa0812050:intron 35.0%
GTGGCAGAAAAAAAATGTCA+AGG - chr5_3:41877349-41877368 None:intergenic 35.0%
AATATCTGTATGTCTCACTG+TGG - chr5_3:41877368-41877387 None:intergenic 35.0%
TGAATACCATCAAACTAACC+TGG - chr5_3:41877411-41877430 None:intergenic 35.0%
!!! GATCTTGGTGAAGTTTTGAA+TGG + chr5_3:41877542-41877561 Msa0812050:CDS 35.0%
! CTTTTCTTGTCAGCATCTTT+TGG - chr5_3:41877634-41877653 None:intergenic 35.0%
AAAGATGCTGACAAGAAAAG+AGG + chr5_3:41877634-41877653 Msa0812050:CDS 35.0%
!!! ATTCAGACATGCTGTTTTGA+AGG + chr5_3:41877664-41877683 Msa0812050:CDS 35.0%
! ACTATGATGACTTGCCAATT+TGG + chr5_3:41877705-41877724 Msa0812050:CDS 35.0%
! CTATGATGACTTGCCAATTT+GGG + chr5_3:41877706-41877725 Msa0812050:CDS 35.0%
! TATGATGACTTGCCAATTTG+GGG + chr5_3:41877707-41877726 Msa0812050:CDS 35.0%
CATCAGTTTCAAATCTTCCA+AGG - chr5_3:41877736-41877755 None:intergenic 35.0%
! AGGCCACAGTTTATCTTTTT+AGG + chr5_3:41877777-41877796 Msa0812050:CDS 35.0%
AGAAGATAGAGAGGTAAATG+TGG + chr5_3:41877886-41877905 Msa0812050:CDS 35.0%
! TTCTCCAACCTTTTCTCAAA+TGG - chr5_3:41877950-41877969 None:intergenic 35.0%
CACATCATTTGGAAATCCAT+TGG + chr5_3:41877993-41878012 Msa0812050:CDS 35.0%
AAATAGCTCGAAATTGTGGT+AGG - chr5_3:41878258-41878277 None:intergenic 35.0%
GATATCTAAACACATCACCA+TGG - chr5_3:41878405-41878424 None:intergenic 35.0%
GCGAACAAAGACTTAAATCT+TGG - chr5_3:41878427-41878446 None:intergenic 35.0%
!!! AACACTCATTTTGAAACGGA+GGG - chr5_3:41878530-41878549 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr5_3:41878634-41878653 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr5_3:41878638-41878657 None:intergenic 35.0%
AAACGGAGGGAGTAATATAA+AGG + chr5_3:41878786-41878805 Msa0812050:intron 35.0%
! GTGTTTTCTATCCATACAAC+AGG + chr5_3:41878901-41878920 Msa0812050:CDS 35.0%
! GTTTTCTATCCATACAACAG+GGG + chr5_3:41878903-41878922 Msa0812050:CDS 35.0%
CCCTTCAATCATGTAATAGA+AGG - chr5_3:41878997-41879016 None:intergenic 35.0%
! GTTTATGCTGTCTAAGATGA+TGG - chr5_3:41879036-41879055 None:intergenic 35.0%
TCTTAGACAGCATAAACAGT+TGG + chr5_3:41879039-41879058 Msa0812050:intron 35.0%
! TCATTGATTGTTGTGAATCC+AGG - chr5_3:41879112-41879131 None:intergenic 35.0%
AATGATTTATGCAGTCACTG+CGG + chr5_3:41879127-41879146 Msa0812050:intron 35.0%
CAACTGGAAAAAGAAAGGAA+AGG - chr5_3:41879289-41879308 None:intergenic 35.0%
CGTGTTAAAGGAAAAACAAC+TGG - chr5_3:41879305-41879324 None:intergenic 35.0%
! GTATTGGTATGTTGCATTTC+AGG + chr5_3:41879375-41879394 Msa0812050:intron 35.0%
TTAACTGGTAGTCTATTCTC+TGG + chr5_3:41879412-41879431 Msa0812050:CDS 35.0%
GACATTCAGCTTTCTTAACA+CGG + chr5_3:41879447-41879466 Msa0812050:CDS 35.0%
ACTTGTAACCTCACCTTTAT+TGG + chr5_3:41879540-41879559 Msa0812050:CDS 35.0%
AACCTCACCTTTATTGGTAT+TGG + chr5_3:41879546-41879565 Msa0812050:CDS 35.0%
ACCTCACCTTTATTGGTATT+GGG + chr5_3:41879547-41879566 Msa0812050:CDS 35.0%
! CCATTTGAGGAAGAGTTTTA+CGG - chr5_3:41879663-41879682 None:intergenic 35.0%
! TCAATGAAAATGGCACTGAA+TGG - chr5_3:41879703-41879722 None:intergenic 35.0%
!! CTTTTGATTGTCACTGCTTT+TGG + chr5_3:41879802-41879821 Msa0812050:CDS 35.0%
!!! TACCTCTACTTTTTAGAGGT+CGG - chr5_3:41880172-41880191 None:intergenic 35.0%
GATATTAGGTCTTTCCTTTG+TGG + chr5_3:41880342-41880361 Msa0812050:intron 35.0%
TCAACTGGGTTGTTCATATA+TGG + chr5_3:41880369-41880388 Msa0812050:CDS 35.0%
!!! TTCTTTCTTTTTCGGCTACA+TGG + chr5_3:41880446-41880465 Msa0812050:CDS 35.0%
TTTCTTATGCTTGGAACTGT+GGG + chr5_3:41880489-41880508 Msa0812050:CDS 35.0%
!! GCAATGAGATTTTGCTGTAT+TGG - chr5_3:41880626-41880645 None:intergenic 35.0%
CAGCAAAATCTCATTGCAAA+TGG + chr5_3:41880629-41880648 Msa0812050:three_prime_UTR 35.0%
GGTTTACTGAAGAGTAGTAT+AGG + chr5_3:41880650-41880669 Msa0812050:three_prime_UTR 35.0%
! ACCGTTTTATGCAAACAAGG+TGG + chr5_3:41876340-41876359 Msa0812050:CDS 40.0%
! CCCACCTTGTTTGCATAAAA+CGG - chr5_3:41876344-41876363 None:intergenic 40.0%
! CCGTTTTATGCAAACAAGGT+GGG + chr5_3:41876341-41876360 Msa0812050:CDS 40.0%
TTGCTCTGGTGTATCTCATT+TGG + chr5_3:41876930-41876949 Msa0812050:intron 40.0%
!! TGAAAGTGCCTACCATCAAA+TGG - chr5_3:41876969-41876988 None:intergenic 40.0%
TGGCCAAACTCTAGATTATG+AGG - chr5_3:41877115-41877134 None:intergenic 40.0%
TAGAGTTTGGCCAAGAGATA+CGG + chr5_3:41877122-41877141 Msa0812050:intron 40.0%
!!! AATTTTTGGCCCGTATCTCT+TGG - chr5_3:41877135-41877154 None:intergenic 40.0%
GATACGGGCCAAAAATTGTT+CGG + chr5_3:41877138-41877157 Msa0812050:intron 40.0%
ATACGGGCCAAAAATTGTTC+GGG + chr5_3:41877139-41877158 Msa0812050:intron 40.0%
AACTAACCTGGCGAACAAAA+GGG - chr5_3:41877399-41877418 None:intergenic 40.0%
AAACTAACCTGGCGAACAAA+AGG - chr5_3:41877400-41877419 None:intergenic 40.0%
! ATCTTTTGGCAAATGCTCTC+AGG - chr5_3:41877620-41877639 None:intergenic 40.0%
AAATGATCCGAATGCTGTTG+TGG + chr5_3:41877856-41877875 Msa0812050:CDS 40.0%
ATCCTCACTCTCACATCATT+TGG + chr5_3:41877982-41878001 Msa0812050:CDS 40.0%
TTCCAAATGATGTGAGAGTG+AGG - chr5_3:41877987-41878006 None:intergenic 40.0%
GTTACTGTTCTTCTCTTGAC+CGG + chr5_3:41878037-41878056 Msa0812050:CDS 40.0%
!! GAGCACATTTGATCGCTTTT+TGG - chr5_3:41878192-41878211 None:intergenic 40.0%
TAGGTTTACACCAGATGAAG+AGG + chr5_3:41878342-41878361 Msa0812050:intron 40.0%
! ACTGGATGGAAGTATATCCA+TGG + chr5_3:41878385-41878404 Msa0812050:CDS 40.0%
!!! CAACACTCATTTTGAAACGG+AGG - chr5_3:41878531-41878550 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr5_3:41878635-41878654 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5_3:41878773-41878792 Msa0812050:intron 40.0%
GTCATATACGCATTAACGTC+CGG + chr5_3:41878948-41878967 Msa0812050:CDS 40.0%
!! AGTAAAAGGCAGGTATTGAG+TGG - chr5_3:41879069-41879088 None:intergenic 40.0%
! TTATTTAGGTTCCTCGAACC+TGG + chr5_3:41879091-41879110 Msa0812050:intron 40.0%
GGTCACTTGATCTAAGTCAT+TGG + chr5_3:41879148-41879167 Msa0812050:intron 40.0%
CACGATTGAAAGTAATACCG+TGG + chr5_3:41879321-41879340 Msa0812050:intron 40.0%
!! ACTACCCTTTGGAACAATTG+TGG + chr5_3:41879498-41879517 Msa0812050:CDS 40.0%
ACCCAATACCAATAAAGGTG+AGG - chr5_3:41879551-41879570 None:intergenic 40.0%
! TCACCTTTATTGGTATTGGG+TGG + chr5_3:41879550-41879569 Msa0812050:CDS 40.0%
! CACCTTTATTGGTATTGGGT+GGG + chr5_3:41879551-41879570 Msa0812050:CDS 40.0%
ATCCCACCCAATACCAATAA+AGG - chr5_3:41879556-41879575 None:intergenic 40.0%
! AAGGTGCTTGAAACTCTGAT+TGG - chr5_3:41879594-41879613 None:intergenic 40.0%
TTACGGTACCAAGGTAGTTT+AGG - chr5_3:41879646-41879665 None:intergenic 40.0%
CCGTAAAACTCTTCCTCAAA+TGG + chr5_3:41879660-41879679 Msa0812050:CDS 40.0%
AACTCTTCCTCAAATGGCTA+TGG + chr5_3:41879666-41879685 Msa0812050:CDS 40.0%
ACTACATATTTGCCAGTGTG+TGG + chr5_3:41879728-41879747 Msa0812050:CDS 40.0%
CTACATATTTGCCAGTGTGT+GGG + chr5_3:41879729-41879748 Msa0812050:CDS 40.0%
TACATATTTGCCAGTGTGTG+GGG + chr5_3:41879730-41879749 Msa0812050:CDS 40.0%
!!! TGTCACTGCTTTTGGTAATG+TGG + chr5_3:41879810-41879829 Msa0812050:CDS 40.0%
!! ATACTTTCAACTTGCTGCTG+AGG + chr5_3:41879840-41879859 Msa0812050:CDS 40.0%
GGTGATTGTGTTTGAATGGA+AGG - chr5_3:41879980-41879999 None:intergenic 40.0%
CCAAGGTGATTGTGTTTGAA+TGG - chr5_3:41879984-41880003 None:intergenic 40.0%
CCATTCAAACACAATCACCT+TGG + chr5_3:41879981-41880000 Msa0812050:intron 40.0%
! CACGTGATGCTACAAACTTT+TGG + chr5_3:41880050-41880069 Msa0812050:intron 40.0%
! AAACTTTTGGCCATGCTAGA+TGG + chr5_3:41880063-41880082 Msa0812050:intron 40.0%
ATTAGGTCTTTCCTTTGTGG+TGG + chr5_3:41880345-41880364 Msa0812050:intron 40.0%
CAGACATATCTGATCTTGCA+TGG - chr5_3:41880413-41880432 None:intergenic 40.0%
CATGCAAGATCAGATATGTC+TGG + chr5_3:41880411-41880430 Msa0812050:CDS 40.0%
! TACATGGCTTGCATTTGCTA+TGG + chr5_3:41880462-41880481 Msa0812050:CDS 40.0%
CTTTCTTATGCTTGGAACTG+TGG + chr5_3:41880488-41880507 Msa0812050:CDS 40.0%
TCTGAGCTATTCACACTTGA+GGG - chr5_3:41880556-41880575 None:intergenic 40.0%
TTCTGAGCTATTCACACTTG+AGG - chr5_3:41880557-41880576 None:intergenic 40.0%
AGCATCACATTCATAGCTTC+AGG + chr5_3:41880791-41880810 Msa0812050:three_prime_UTR 40.0%
GGAAAAGTCAACGACGTGTT+TGG + chr5_3:41876226-41876245 Msa0812050:CDS 45.0%
!! TGTAGCACTGACACTTCTGA+TGG + chr5_3:41876756-41876775 Msa0812050:intron 45.0%
! TATCAGTGTTGTGCTGGTGT+CGG - chr5_3:41876802-41876821 None:intergenic 45.0%
CACATGTATCAGTGTTGTGC+TGG - chr5_3:41876808-41876827 None:intergenic 45.0%
! GGGCCTCATAATCTAGAGTT+TGG + chr5_3:41877109-41877128 Msa0812050:intron 45.0%
AGAGTTTGGCCAAGAGATAC+GGG + chr5_3:41877123-41877142 Msa0812050:intron 45.0%
!! TGTTCGCCAGGTTAGTTTGA+TGG + chr5_3:41877402-41877421 Msa0812050:intron 45.0%
! TTGCCAATTTGGGGTTTCCT+TGG + chr5_3:41877716-41877735 Msa0812050:CDS 45.0%
CTTCCAAGGAAACCCCAAAT+TGG - chr5_3:41877722-41877741 None:intergenic 45.0%
GTCAAGTCCACAACAGCATT+CGG - chr5_3:41877866-41877885 None:intergenic 45.0%
GGACTTGACAGAAGATAGAG+AGG + chr5_3:41877877-41877896 Msa0812050:CDS 45.0%
GAGAATCATGGCAAGGAATC+CGG - chr5_3:41878059-41878078 None:intergenic 45.0%
AAGTACGCGCATGAGAATCA+TGG - chr5_3:41878071-41878090 None:intergenic 45.0%
GCGATCAAATGTGCTCAATG+TGG + chr5_3:41878196-41878215 Msa0812050:intron 45.0%
TGGTAGGAGCTGCAATGTAA+AGG - chr5_3:41878242-41878261 None:intergenic 45.0%
TCATCAAGTGCCTCTTCATC+TGG - chr5_3:41878355-41878374 None:intergenic 45.0%
! CTTGATGACCAAGAAGAGAC+TGG + chr5_3:41878367-41878386 Msa0812050:CDS 45.0%
ATGACCAAGAAGAGACTGGA+TGG + chr5_3:41878371-41878390 Msa0812050:CDS 45.0%
ACTTCCATCCAGTCTCTTCT+TGG - chr5_3:41878378-41878397 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5_3:41878772-41878791 Msa0812050:intron 45.0%
AACAAAGCTCCCCTGTTGTA+TGG - chr5_3:41878915-41878934 None:intergenic 45.0%
GAAGGAAGCTGCAGAATAAC+CGG - chr5_3:41878979-41878998 None:intergenic 45.0%
TTGTTGTGAATCCAGGTTCG+AGG - chr5_3:41879105-41879124 None:intergenic 45.0%
CCACTCAGTTTCTCTTTCCA+CGG - chr5_3:41879341-41879360 None:intergenic 45.0%
TAGTGCTGCAGTGGAGTTAT+AGG - chr5_3:41879482-41879501 None:intergenic 45.0%
!! GGATACTTGTTGGTTCGACA+AGG - chr5_3:41879613-41879632 None:intergenic 45.0%
TCGAACCAACAAGTATCCGA+GGG + chr5_3:41879615-41879634 Msa0812050:CDS 45.0%
AATCTCCCTCGGATACTTGT+TGG - chr5_3:41879623-41879642 None:intergenic 45.0%
GGTAGTTTAGGAATCTCCCT+CGG - chr5_3:41879634-41879653 None:intergenic 45.0%
GGGAGATTCCTAAACTACCT+TGG + chr5_3:41879635-41879654 Msa0812050:CDS 45.0%
! GGAAGAGTTTTACGGTACCA+AGG - chr5_3:41879655-41879674 None:intergenic 45.0%
AATCCAGCCATAGCCATTTG+AGG - chr5_3:41879676-41879695 None:intergenic 45.0%
TTGCTGCTGAGGATCATGAA+TGG + chr5_3:41879851-41879870 Msa0812050:CDS 45.0%
GAATTAAGAGGACCGACCTT+TGG - chr5_3:41880115-41880134 None:intergenic 45.0%
!! TTCCTTTGTGGTGGATCAAC+TGG + chr5_3:41880354-41880373 Msa0812050:CDS 45.0%
!! TCCTTTGTGGTGGATCAACT+GGG + chr5_3:41880355-41880374 Msa0812050:CDS 45.0%
ACTTGAGGGAACGGTATATG+TGG - chr5_3:41880542-41880561 None:intergenic 45.0%
GCTATTCACACTTGAGGGAA+CGG - chr5_3:41880551-41880570 None:intergenic 45.0%
ATAGCTCAGAAGAAGCTCAC+TGG + chr5_3:41880566-41880585 Msa0812050:exon 45.0%
GAAGCTCACTGGAATAAACC+AGG + chr5_3:41880577-41880596 Msa0812050:three_prime_UTR 45.0%
! ACAGAGTAAAACAAAGCGCC+TGG - chr5_3:41880598-41880617 None:intergenic 45.0%
TGGGACCCTTTCATAATCCC+AGG + chr5_3:41876360-41876379 Msa0812050:CDS 50.0%
CCATTCCTCCGGAAATTGGA+GGG - chr5_3:41877091-41877110 None:intergenic 50.0%
CCTCCAATTTCCGGAGGAAT+GGG + chr5_3:41877089-41877108 Msa0812050:intron 50.0%
GATTATGAGGCCCATTCCTC+CGG - chr5_3:41877102-41877121 None:intergenic 50.0%
TCGGGTGAAGATTTGACCTC+AGG + chr5_3:41877157-41877176 Msa0812050:intron 50.0%
GAATTGTTCGGGAGAACCTG+AGG - chr5_3:41877176-41877195 None:intergenic 50.0%
! GATCTTCCCTTTTGTTCGCC+AGG + chr5_3:41877390-41877409 Msa0812050:CDS 50.0%
!! GGGAGCTTTGTTTACTGCAC+TGG + chr5_3:41878923-41878942 Msa0812050:CDS 50.0%
TGCAGAATAACCGGCAATGC+CGG - chr5_3:41878970-41878989 None:intergenic 50.0%
CCGTGGAAAGAGAAACTGAG+TGG + chr5_3:41879338-41879357 Msa0812050:intron 50.0%
! TTGGTATTGGGTGGGATTGC+TGG + chr5_3:41879559-41879578 Msa0812050:CDS 50.0%
GTCGAACCAACAAGTATCCG+AGG + chr5_3:41879614-41879633 Msa0812050:CDS 50.0%
CTTCCTCAAATGGCTATGGC+TGG + chr5_3:41879670-41879689 Msa0812050:CDS 50.0%
AATCTGATGACCCCACACAC+TGG - chr5_3:41879743-41879762 None:intergenic 50.0%
CTGCTGAGGATCATGAATGG+TGG + chr5_3:41879854-41879873 Msa0812050:CDS 50.0%
CTGAGGATCATGAATGGTGG+TGG + chr5_3:41879857-41879876 Msa0812050:CDS 50.0%
!! AGGATCATGAATGGTGGTGG+AGG + chr5_3:41879860-41879879 Msa0812050:CDS 50.0%
GGATCGAGATCCATCTAGCA+TGG - chr5_3:41880076-41880095 None:intergenic 50.0%
! GGCCGACCTCTAAAAAGTAG+AGG + chr5_3:41880167-41880186 Msa0812050:intron 50.0%
ATAAGTTCGCGCTCGACTCA+AGG + chr5_3:41880201-41880220 Msa0812050:intron 50.0%
ACCCAGTTGATCCACCACAA+AGG - chr5_3:41880359-41880378 None:intergenic 50.0%
! GTTGTGCTGGTGTCGGACAT+CGG - chr5_3:41876795-41876814 None:intergenic 55.0%
GGCCTGAACCCTCCAATTTC+CGG + chr5_3:41877080-41877099 Msa0812050:intron 55.0%
CTCCGGAAATTGGAGGGTTC+AGG - chr5_3:41877085-41877104 None:intergenic 55.0%
CTGAACCCTCCAATTTCCGG+AGG + chr5_3:41877083-41877102 Msa0812050:intron 55.0%
CCCTCCAATTTCCGGAGGAA+TGG + chr5_3:41877088-41877107 Msa0812050:intron 55.0%
CCCATTCCTCCGGAAATTGG+AGG - chr5_3:41877092-41877111 None:intergenic 55.0%
AGGCCCATTCCTCCGGAAAT+TGG - chr5_3:41877095-41877114 None:intergenic 55.0%
CGCGCATGAGAATCATGGCA+AGG - chr5_3:41878066-41878085 None:intergenic 55.0%
TCTTTGTTCGCCGCAGCACT+TGG + chr5_3:41878436-41878455 Msa0812050:CDS 55.0%
! AGTGCCTGTTCCAAGTGCTG+CGG - chr5_3:41878449-41878468 None:intergenic 55.0%
GCATTAACGTCCGGCATTGC+CGG + chr5_3:41878957-41878976 Msa0812050:CDS 55.0%
TCCACTGCAGCACTACCCTT+TGG + chr5_3:41879487-41879506 Msa0812050:CDS 55.0%
TCCAAAGGGTAGTGCTGCAG+TGG - chr5_3:41879491-41879510 None:intergenic 55.0%
TTTGGCTGCAGATGCGGAAG+AGG - chr5_3:41880097-41880116 None:intergenic 55.0%
TCTTCCGCATCTGCAGCCAA+AGG + chr5_3:41880096-41880115 Msa0812050:intron 55.0%
! CTGGTGTCGGACATCGGACT+CGG - chr5_3:41876789-41876808 None:intergenic 60.0%
TTCGCCGCAGCACTTGGAAC+AGG + chr5_3:41878442-41878461 Msa0812050:CDS 60.0%
CCGACCTTTGGCTGCAGATG+CGG - chr5_3:41880103-41880122 None:intergenic 60.0%
CCGCATCTGCAGCCAAAGGT+CGG + chr5_3:41880100-41880119 Msa0812050:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 41876213 41880844 41876213 ID=Msa0812050;Name=Msa0812050
chr5_3 mRNA 41876213 41880844 41876213 ID=Msa0812050-mRNA-1;Parent=Msa0812050;Name=Msa0812050-mRNA-1;_AED=0.07;_eAED=0.07;_QI=11|1|0.85|1|1|1|7|275|595
chr5_3 exon 41876213 41876381 41876213 ID=Msa0812050-mRNA-1:exon:12820;Parent=Msa0812050-mRNA-1
chr5_3 exon 41877371 41877411 41877371 ID=Msa0812050-mRNA-1:exon:12821;Parent=Msa0812050-mRNA-1
chr5_3 exon 41877519 41878107 41877519 ID=Msa0812050-mRNA-1:exon:12822;Parent=Msa0812050-mRNA-1
chr5_3 exon 41878345 41878482 41878345 ID=Msa0812050-mRNA-1:exon:12823;Parent=Msa0812050-mRNA-1
chr5_3 exon 41878869 41879025 41878869 ID=Msa0812050-mRNA-1:exon:12824;Parent=Msa0812050-mRNA-1
chr5_3 exon 41879397 41879881 41879397 ID=Msa0812050-mRNA-1:exon:12825;Parent=Msa0812050-mRNA-1
chr5_3 exon 41880350 41880844 41880350 ID=Msa0812050-mRNA-1:exon:12826;Parent=Msa0812050-mRNA-1
chr5_3 five_prime_UTR 41876213 41876223 41876213 ID=Msa0812050-mRNA-1:five_prime_utr;Parent=Msa0812050-mRNA-1
chr5_3 CDS 41876224 41876381 41876224 ID=Msa0812050-mRNA-1:cds;Parent=Msa0812050-mRNA-1
chr5_3 CDS 41877371 41877411 41877371 ID=Msa0812050-mRNA-1:cds;Parent=Msa0812050-mRNA-1
chr5_3 CDS 41877519 41878107 41877519 ID=Msa0812050-mRNA-1:cds;Parent=Msa0812050-mRNA-1
chr5_3 CDS 41878345 41878482 41878345 ID=Msa0812050-mRNA-1:cds;Parent=Msa0812050-mRNA-1
chr5_3 CDS 41878869 41879025 41878869 ID=Msa0812050-mRNA-1:cds;Parent=Msa0812050-mRNA-1
chr5_3 CDS 41879397 41879881 41879397 ID=Msa0812050-mRNA-1:cds;Parent=Msa0812050-mRNA-1
chr5_3 CDS 41880350 41880569 41880350 ID=Msa0812050-mRNA-1:cds;Parent=Msa0812050-mRNA-1
chr5_3 three_prime_UTR 41880570 41880844 41880570 ID=Msa0812050-mRNA-1:three_prime_utr;Parent=Msa0812050-mRNA-1
Gene Sequence

>Msa0812050

ATGGAAAAGTCAACGACGTGTTTGGTTAGTGCCATTGTGATCCTATGTTGTTTCTGCTGTATAAACTATGTTACATCTGATGCATCAGATCATCGTTATAAAGAAGGTGATTTTGTACCGTTTTATGCAAACAAGGTGGGACCCTTTCATAATCCCAGTGAGACATACAGATATTTTGATCTTCCCTTTTGTTCGCCAGAAAATGTGGAAGAAAAGAAAGAAGATCTTGGTGAAGTTTTGAATGGTGATAGACTAGTTGTTGCTCCTTACAAACTTGAATTCTTGATTGATAAAAAACCTGAGAGCATTTGCCAAAAGATGCTGACAAGAAAAGAGGTTGCTCAATTCAGACATGCTGTTTTGAAGGACTATTTCTATCAAATGTACTATGATGACTTGCCAATTTGGGGTTTCCTTGGAAGATTTGAAACTGATGAAAAAGATGTTGACACAAATGAGGCCACAGTTTATCTTTTTAGGAATGTTCATTTTGAGATTCTGTACAATAACGATCGTATTATCGATGTTTTTGTTAAAAATGATCCGAATGCTGTTGTGGACTTGACAGAAGATAGAGAGGTAAATGTGGATTTCACATATTCTGTCAAATGGATTGAAACAGATATTCCATTTGAGAAAAGGTTGGAGAAATACTCGCAGACATCCTCACTCTCACATCATTTGGAAATCCATTGGTTTTCTATTATTAACTCGTGTGTTACTGTTCTTCTCTTGACCGGATTCCTTGCCATGATTCTCATGCGCGTACTTAAGAACGACTTTGTCAAGTTTACACCAGATGAAGAGGCACTTGATGACCAAGAAGAGACTGGATGGAAGTATATCCATGGTGATGTGTTTAGATATCCAAGATTTAAGTCTTTGTTCGCCGCAGCACTTGGAACAGGCACTCAGTTATTTACACTTGTAATCTTCATATTTATGCTTGCTCTAGTTGGTGTTTTCTATCCATACAACAGGGGAGCTTTGTTTACTGCACTGGTTGTCATATACGCATTAACGTCCGGCATTGCCGGTTATTCTGCAGCTTCCTTCTATTACATGATTGAAGGGAAAAATTGGGTGAAAATTTTGGTGTTAACTGGTAGTCTATTCTCTGGACCATTGTTTTTGACATTCAGCTTTCTTAACACGGTTGCTGTCGCCTATAACTCCACTGCAGCACTACCCTTTGGAACAATTGTGGTTATTTTCTTAATATGGACACTTGTAACCTCACCTTTATTGGTATTGGGTGGGATTGCTGGTAAGAATAGCCAATCAGAGTTTCAAGCACCTTGTCGAACCAACAAGTATCCGAGGGAGATTCCTAAACTACCTTGGTACCGTAAAACTCTTCCTCAAATGGCTATGGCTGGATTTTTGCCATTCAGTGCCATTTTCATTGAACTCTACTACATATTTGCCAGTGTGTGGGGTCATCAGATTTATACCATATACAGCATTTTGTTCATTGTTTTCATCATTCTTTTGATTGTCACTGCTTTTGGTAATGTGGCATTGACATACTTTCAACTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTCTTTCCTTTGTGGTGGATCAACTGGGTTGTTCATATATGGTTACTGCATGTTTTTCTACCATGCAAGATCAGATATGTCTGGTTTCATGCAAACTTCTTTCTTTTTCGGCTACATGGCTTGCATTTGCTATGGTTTCTTTCTTATGCTTGGAACTGTGGGTTTCAGAGCTTCTTTAATCTTTGTCAGCCACATATACCGTTCCCTCAAGTGTGAATAG

Protein sequence

>Msa0812050

MEKSTTCLVSAIVILCCFCCINYVTSDASDHRYKEGDFVPFYANKVGPFHNPSETYRYFDLPFCSPENVEEKKEDLGEVLNGDRLVVAPYKLEFLIDKKPESICQKMLTRKEVAQFRHAVLKDYFYQMYYDDLPIWGFLGRFETDEKDVDTNEATVYLFRNVHFEILYNNDRIIDVFVKNDPNAVVDLTEDREVNVDFTYSVKWIETDIPFEKRLEKYSQTSSLSHHLEIHWFSIINSCVTVLLLTGFLAMILMRVLKNDFVKFTPDEEALDDQEETGWKYIHGDVFRYPRFKSLFAAALGTGTQLFTLVIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYSAASFYYMIEGKNWVKILVLTGSLFSGPLFLTFSFLNTVAVAYNSTAALPFGTIVVIFLIWTLVTSPLLVLGGIAGKNSQSEFQAPCRTNKYPREIPKLPWYRKTLPQMAMAGFLPFSAIFIELYYIFASVWGHQIYTIYSILFIVFIILLIVTAFGNVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYGYCMFFYHARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLIFVSHIYRSLKCE*