AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516000 MtrunA17_Chr3g0126401 98.249 514 9 0 1 514 1 514 0.0 1030
Msa0516000 MtrunA17_Chr3g0145921 28.819 288 200 3 229 514 287 571 2.75e-33 133
Msa0516000 MtrunA17_Chr7g0264491 31.000 300 202 4 216 513 257 553 3.38e-32 130
Msa0516000 MtrunA17_Chr1g0180881 28.819 288 200 3 216 501 261 545 1.18e-29 122
Msa0516000 MtrunA17_Chr4g0021031 30.565 301 181 10 222 505 204 493 1.46e-23 103
Msa0516000 MtrunA17_Chr3g0090001 32.394 213 140 3 305 514 192 403 3.90e-19 89.7
Msa0516000 MtrunA17_Chr1g0146481 25.954 262 180 6 256 513 296 547 6.00e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516000 AT5G24120.1 61.877 522 186 5 1 514 1 517 0.0 625
Msa0516000 AT5G24120.3 61.877 522 186 5 1 514 1 517 0.0 625
Msa0516000 AT5G24120.2 61.877 522 186 5 1 514 1 517 0.0 625
Msa0516000 AT2G36990.1 31.333 300 201 3 216 513 247 543 1.59e-35 139
Msa0516000 AT1G08540.1 30.903 288 194 3 229 514 285 569 3.78e-34 136
Msa0516000 AT5G13730.1 27.532 316 197 9 215 512 113 414 4.30e-21 95.9
Msa0516000 AT1G64860.1 28.094 299 191 8 222 505 202 491 1.15e-20 95.5
Msa0516000 AT1G64860.2 28.497 193 130 4 222 410 202 390 6.73e-16 80.9
Msa0516000 AT3G53920.1 25.614 285 196 7 237 513 293 569 3.17e-14 75.9

Find 137 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATCGTGAGTATTTAAA+TGG 0.229731 3_4:+67424168 None:intergenic
ATTACATCACGGTATCTTTC+AGG 0.229998 3_4:+67425275 None:intergenic
TTGTTAATCTCTTCTATATA+TGG 0.255988 3_4:-67424016 Msa0516000:three_prime_UTR
AGAAGATTGACGAACTTCTA+AGG 0.267064 3_4:-67427306 Msa0516000:CDS
CCGTTAACGGTAGCATTTAA+AGG 0.276378 3_4:-67427778 Msa0516000:CDS
AAGAGGATTTAAACAGTGAT+AGG 0.297201 3_4:-67427456 Msa0516000:CDS
CCTTTAAATGCTACCGTTAA+CGG 0.304115 3_4:+67427778 None:intergenic
GAGACAGCTCTTGGTTTCTT+AGG 0.309175 3_4:+67427649 None:intergenic
TTGAGCCAAACCGGAGATTT+CGG 0.320769 3_4:-67425990 Msa0516000:CDS
AATGAGCTTCTCACCTTCAT+TGG 0.323733 3_4:+67427178 None:intergenic
ATACTCAGTACCGGCTGATT+TGG 0.341811 3_4:-67427281 Msa0516000:CDS
CTCATCAAGATTCATCCGTT+TGG 0.343384 3_4:+67427408 None:intergenic
GTAAATCATCTTTCACTTGA+AGG 0.343761 3_4:+67426716 None:intergenic
AGCTTCTCACGTGTTCCCTT+TGG 0.354929 3_4:-67425907 Msa0516000:CDS
GTCTTGAATGCAGTGATAGA+AGG 0.357509 3_4:+67425237 None:intergenic
GTTGATGATGGTGGTGTTGA+TGG 0.360239 3_4:-67425179 Msa0516000:CDS
CCTAGAGATGTTCAAGTTTG+AGG 0.363298 3_4:+67424375 None:intergenic
CTTTGTCAGGCTGGAGTTAA+GGG 0.363815 3_4:-67426036 Msa0516000:CDS
TTTCAACCTACAGTCTGTTT+TGG 0.364864 3_4:-67425966 Msa0516000:CDS
TCTTTGTCAGGCTGGAGTTA+AGG 0.368656 3_4:-67426037 Msa0516000:CDS
GAGAATGAAAGAGAAATTAT+AGG 0.379992 3_4:+67428577 None:intergenic
TCCTCAGTGGAGACAGCTCT+TGG 0.384406 3_4:+67427640 None:intergenic
TGCAAGAAATAAGCTAATAA+AGG 0.388641 3_4:-67426596 Msa0516000:intron
ATCAATGGGGTTGTTGATGA+TGG 0.389488 3_4:-67425191 Msa0516000:CDS
CGTCGCTATGTTGTATAAAT+CGG 0.401881 3_4:-67424283 Msa0516000:exon
TAACTGAAATTCGAAAATTA+CGG 0.403208 3_4:+67428619 None:intergenic
TGCTCCGAAGAAGGCAGAAC+TGG 0.403451 3_4:+67427226 None:intergenic
AATCTAGACAAAGAATCTAA+TGG 0.405112 3_4:+67428555 None:intergenic
ACCTCCAGTTCTGCCTTCTT+CGG 0.405115 3_4:-67427230 Msa0516000:CDS
AGAGAAATTATAGGTGTTTG+AGG 0.409965 3_4:+67428586 None:intergenic
ATAATCTGCATCACATATAT+CGG 0.410715 3_4:+67427537 None:intergenic
CTTGAACATCTCTAGGGAAA+TGG 0.415901 3_4:-67424368 Msa0516000:CDS
AGACAGAGGTTTGGACTTGA+TGG 0.418320 3_4:-67424427 Msa0516000:CDS
CAGCCAAGACGCACAAGAAA+AGG 0.419331 3_4:-67427693 Msa0516000:CDS
CCTCAAACTTGAACATCTCT+AGG 0.422830 3_4:-67424375 Msa0516000:CDS
ATGTACATTGTGCAATTTCA+AGG 0.427633 3_4:+67424118 None:intergenic
TTTCTTTCTAAACACTGATT+AGG 0.428773 3_4:-67427901 Msa0516000:five_prime_UTR
TCTATTATTTCTTCCTCCGT+TGG 0.435604 3_4:+67425314 None:intergenic
AATCTTCTCAATTCTACTCC+TGG 0.438326 3_4:+67427321 None:intergenic
CTGATTAGGCAAACTTGGTA+TGG 0.439102 3_4:-67427887 Msa0516000:exon
GGTAAGGGTGACAGAACTTT+GGG 0.439878 3_4:-67424406 Msa0516000:CDS
AGATTACATGTAACGTGTAT+AGG 0.456918 3_4:+67424090 None:intergenic
TTTCAAGATCTTTGTCAGGC+TGG 0.460093 3_4:-67426045 Msa0516000:CDS
CGCAAGAAGAGTTTATCAAT+GGG 0.461379 3_4:-67425205 Msa0516000:CDS
GAAAGCCGAAATCTCCGGTT+TGG 0.463173 3_4:+67425985 None:intergenic
TTGGTGATCAGACAGAGGTT+TGG 0.464083 3_4:-67424436 Msa0516000:CDS
AAACACTGATTAGGCAAACT+TGG 0.465435 3_4:-67427892 Msa0516000:five_prime_UTR
TGACAAAGATCTTGAAACCT+TGG 0.467823 3_4:+67426051 None:intergenic
CTGATCACCAAGTTCTCCTT+AGG 0.468005 3_4:+67424448 None:intergenic
GCTCAAGCATTCAGCTCGAT+TGG 0.469057 3_4:-67424314 Msa0516000:CDS
AAGGTTTCAAGATCTTTGTC+AGG 0.472724 3_4:-67426049 Msa0516000:CDS
TGGTAAGGGTGACAGAACTT+TGG 0.477364 3_4:-67424407 Msa0516000:CDS
ATCTTCTCAATTCTACTCCT+GGG 0.478589 3_4:+67427322 None:intergenic
ATAACTCAATCTTAGCTCTT+CGG 0.481173 3_4:+67425357 None:intergenic
TCAAGTAAAGAAAGCAATAG+AGG 0.482166 3_4:-67426629 Msa0516000:CDS
CATCACATATATCGGTTGTC+GGG 0.482870 3_4:+67427545 None:intergenic
TTACATCACGGTATCTTTCA+GGG 0.483805 3_4:+67425276 None:intergenic
TGTATTGAAGAGACCGTTAA+CGG 0.487228 3_4:-67427791 Msa0516000:CDS
CTGATTTGGTCAGTCTAGAC+TGG 0.488397 3_4:-67427267 Msa0516000:CDS
GCATCACATATATCGGTTGT+CGG 0.491957 3_4:+67427544 None:intergenic
TAATCCACATCCAATGAAGA+TGG 0.497477 3_4:+67427610 None:intergenic
TCTCGAAGGGGTAAGAAGAT+TGG 0.504636 3_4:-67427490 Msa0516000:CDS
GAAGGCAACCTGCTCTACTA+AGG 0.506636 3_4:-67425148 Msa0516000:CDS
TTGTACCTTTGATCTCTGAA+TGG 0.508503 3_4:+67428529 None:intergenic
AGAGCAAGCCTTAGTAGAGC+AGG 0.510037 3_4:+67425140 None:intergenic
CTCTACTATGTGACTAGGTA+AGG 0.512361 3_4:+67424210 None:intergenic
GTTAACGGTCTCTTCAATAC+AGG 0.512611 3_4:+67427793 None:intergenic
ACGCAAGAAGAGTTTATCAA+TGG 0.515058 3_4:-67425206 Msa0516000:CDS
TGAGAAGCTTGCGAGGGTCA+TGG 0.515197 3_4:+67425921 None:intergenic
AGATGATTTACAGAAGGAGC+TGG 0.516579 3_4:-67426704 Msa0516000:CDS
ATTGTGCTGTTGCAGGAACT+TGG 0.521028 3_4:-67427946 Msa0516000:intron
GATTGGTGATGTAAGTAAAG+AGG 0.522341 3_4:-67427473 Msa0516000:CDS
GAGGTTTGGACTTGATGGTA+AGG 0.523710 3_4:-67424422 Msa0516000:CDS
CTGTTTCAAGCTCAGCTGCT+CGG 0.525455 3_4:-67427855 Msa0516000:CDS
GACAAAGATCTTGAAACCTT+GGG 0.527279 3_4:+67426052 None:intergenic
ATCGTGAGTATTTAAATGGC+CGG 0.531263 3_4:+67424172 None:intergenic
GTAAAGAAAGCAATAGAGGT+TGG 0.531566 3_4:-67426625 Msa0516000:CDS
TCTGAAGCCTAAGGAGAACT+TGG 0.533811 3_4:-67424455 Msa0516000:CDS
TCTTGAATGCAGTGATAGAA+GGG 0.536462 3_4:+67425238 None:intergenic
GAAGATTGACGAACTTCTAA+GGG 0.538367 3_4:-67427305 Msa0516000:CDS
CATCACTCTACTATGTGACT+AGG 0.539134 3_4:+67424205 None:intergenic
GCTTGATTCTCTGAAGCCTA+AGG 0.542662 3_4:-67424464 Msa0516000:CDS
CTCAAACTTGAACATCTCTA+GGG 0.544621 3_4:-67424374 Msa0516000:CDS
AGTTATCATTTCAGCTTCAG+AGG 0.545216 3_4:-67425340 Msa0516000:CDS
ACCAGAAAACAAAAGCCAAA+CGG 0.546934 3_4:-67427423 Msa0516000:CDS
CAAGTTGATGCAACCAATGA+AGG 0.548325 3_4:-67427191 Msa0516000:intron
GGAGCTGGAAAGAGAGCCTA+CGG 0.552589 3_4:-67426689 Msa0516000:CDS
AAGATACCGTGATGTAATGA+AGG 0.553790 3_4:-67425270 Msa0516000:CDS
TGTTCCCTTTGGACTTGAGT+CGG 0.554834 3_4:-67425896 Msa0516000:intron
AATGGGGTTGTTGATGATGG+TGG 0.565643 3_4:-67425188 Msa0516000:CDS
AGAGGATTTAAACAGTGATA+GGG 0.568935 3_4:-67427455 Msa0516000:CDS
AGTGAAAGATGATTTACAGA+AGG 0.573532 3_4:-67426710 Msa0516000:CDS
TCAGCTGCTCGGACTCCACT+AGG 0.575229 3_4:-67427844 Msa0516000:CDS
TACTATGTGACTAGGTAAGG+TGG 0.576171 3_4:+67424213 None:intergenic
AGAGTGATGATTTGCATCAC+CGG 0.577731 3_4:-67424191 Msa0516000:three_prime_UTR
CATACCGACTCAAGTCCAAA+GGG 0.580195 3_4:+67425892 None:intergenic
GGTGAGAAAGCACGAAGTCA+AGG 0.585592 3_4:-67424347 Msa0516000:CDS
GAACACGTGAGAAGCTTGCG+AGG 0.589931 3_4:+67425914 None:intergenic
TTCTTCCATTCAGAGATCAA+AGG 0.591840 3_4:-67428534 Msa0516000:intron
AGGTTGAAAGCCGAAATCTC+CGG 0.593857 3_4:+67425980 None:intergenic
GTGTTGATGGCGATAACAGA+AGG 0.598234 3_4:-67425166 Msa0516000:CDS
GATCAAAAGAGTCTCTCGAA+GGG 0.598531 3_4:-67427503 Msa0516000:CDS
AACTTTGTATTCAATCCTAG+TGG 0.599283 3_4:+67427829 None:intergenic
AGGTTTGGACTTGATGGTAA+GGG 0.603110 3_4:-67424421 Msa0516000:CDS
TGATTAGGCAAACTTGGTAT+GGG 0.604520 3_4:-67427886 Msa0516000:exon
TCAGCTATTTCATCCTCCGT+AGG 0.604604 3_4:+67426673 None:intergenic
TCTAAGGGAATACTCAGTAC+CGG 0.605704 3_4:-67427290 Msa0516000:CDS
AGCTTGCGAGGGTCATGGAA+CGG 0.606319 3_4:+67425926 None:intergenic
ACATACCGACTCAAGTCCAA+AGG 0.607252 3_4:+67425891 None:intergenic
ACTATGTGACTAGGTAAGGT+GGG 0.607499 3_4:+67424214 None:intergenic
AGGTAAGGTGGGACTACCAC+GGG 0.608326 3_4:+67424225 None:intergenic
TTGATGCCTTCATTACATCA+CGG 0.616848 3_4:+67425264 None:intergenic
TACATCACGGTATCTTTCAG+GGG 0.616885 3_4:+67425277 None:intergenic
AACGGATGAATCTTGATGAG+AGG 0.617893 3_4:-67427405 Msa0516000:CDS
ATTGATAAACTCTTCTTGCG+TGG 0.621610 3_4:+67425208 None:intergenic
AGATCAAAAGAGTCTCTCGA+AGG 0.624213 3_4:-67427504 Msa0516000:CDS
TCTTATCCAAAACAGACTGT+AGG 0.625554 3_4:+67425960 None:intergenic
AAGGCTTGCTCTTGATGATG+TGG 0.625750 3_4:-67425129 Msa0516000:intron
GTGAAGATGTCATTCCAACT+CGG 0.626818 3_4:-67427357 Msa0516000:CDS
TAAACAGAATGACACAGCGT+TGG 0.627600 3_4:-67427752 Msa0516000:CDS
CTTGAATGCAGTGATAGAAG+GGG 0.628428 3_4:+67425239 None:intergenic
TCCGAAGAAGGCAGAACTGG+AGG 0.632944 3_4:+67427229 None:intergenic
TCAGCTTCAGAGGTCACCAA+CGG 0.634098 3_4:-67425330 Msa0516000:CDS
GGATTTAAACAGTGATAGGG+TGG 0.634412 3_4:-67427452 Msa0516000:CDS
TGATCACGAACAAGACAAGC+CGG 0.636977 3_4:+67426103 None:intergenic
TCTAGACTGACCAAATCAGC+CGG 0.641619 3_4:+67427271 None:intergenic
ATCAAAAGAGTCTCTCGAAG+GGG 0.655049 3_4:-67427502 Msa0516000:CDS
TACAGAAATACATGTGCCCG+TGG 0.657647 3_4:-67424241 Msa0516000:three_prime_UTR
AACACGTGAGAAGCTTGCGA+GGG 0.668557 3_4:+67425915 None:intergenic
ACGGTCTCTTCAATACAGGA+TGG 0.670415 3_4:+67427797 None:intergenic
TAGGTAAGGTGGGACTACCA+CGG 0.670858 3_4:+67424224 None:intergenic
TTACATGTAACGTGTATAGG+TGG 0.675107 3_4:+67424093 None:intergenic
GCTTCAGAGGTCACCAACGG+AGG 0.677471 3_4:-67425327 Msa0516000:CDS
AGAACTTGGTGATCAGACAG+AGG 0.691541 3_4:-67424441 Msa0516000:CDS
GCAAGAAGAGTTTATCAATG+GGG 0.710931 3_4:-67425204 Msa0516000:CDS
ACCAAGAGCTGTCTCCACTG+AGG 0.712371 3_4:-67427641 Msa0516000:CDS
GCTGGAAAGAGAGCCTACGG+AGG 0.718077 3_4:-67426686 Msa0516000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTGAAACTAAATTGAA+TGG - chr3_4:67424564-67424583 Msa0516000:intron 15.0%
!!! TTTGTATATATTTTCAAGTA+TGG + chr3_4:67425048-67425067 None:intergenic 15.0%
!! TTACATCAATAATTAAGAAA+TGG - chr3_4:67426463-67426482 Msa0516000:intron 15.0%
!! CAATTTATTACAATACATAT+AGG + chr3_4:67426912-67426931 None:intergenic 15.0%
!! AAAAATTGTGAAATATCATT+AGG - chr3_4:67427672-67427691 Msa0516000:CDS 15.0%
!! AATAGAATGAATCAAATCAA+AGG - chr3_4:67424315-67424334 Msa0516000:CDS 20.0%
!!! ATTGTTTTTCCTTTCTAATT+TGG - chr3_4:67424390-67424409 Msa0516000:CDS 20.0%
!! TACCAATGATTATATGTATA+AGG - chr3_4:67424445-67424464 Msa0516000:CDS 20.0%
!! TTCCTTATACATATAATCAT+TGG + chr3_4:67424450-67424469 None:intergenic 20.0%
!! TGAAATTCATGCATATAATA+TGG - chr3_4:67425676-67425695 Msa0516000:intron 20.0%
!!! AGATACATTTGTTAATTTTC+AGG - chr3_4:67425875-67425894 Msa0516000:intron 20.0%
!! GACTTTGTAATCTTTAAATT+TGG - chr3_4:67426404-67426423 Msa0516000:intron 20.0%
!! TTTATTACAATACATATAGG+TGG + chr3_4:67426909-67426928 None:intergenic 20.0%
!! CAATGAAAATATTATTGGAT+CGG + chr3_4:67427090-67427109 None:intergenic 20.0%
!! TTGTTAATCTCTTCTATATA+TGG - chr3_4:67428602-67428621 Msa0516000:five_prime_UTR 20.0%
! GAGAATGAAAGAGAAATTAT+AGG + chr3_4:67424044-67424063 None:intergenic 25.0%
! AATCTAGACAAAGAATCTAA+TGG + chr3_4:67424066-67424085 None:intergenic 25.0%
! TTATATGTATAAGGAATCAC+TGG - chr3_4:67424454-67424473 Msa0516000:CDS 25.0%
!! TTTCTTTCTAAACACTGATT+AGG - chr3_4:67424717-67424736 Msa0516000:intron 25.0%
! ATAATCTGCATCACATATAT+CGG + chr3_4:67425084-67425103 None:intergenic 25.0%
! TATTGGAAATATTGTTGACA+TGG + chr3_4:67425800-67425819 None:intergenic 25.0%
! CAACAATATTTCCAATATAG+TGG - chr3_4:67425803-67425822 Msa0516000:intron 25.0%
! TGCAAGAAATAAGCTAATAA+AGG - chr3_4:67426022-67426041 Msa0516000:CDS 25.0%
! AAAGTCATCAGAAATTTCAA+TGG + chr3_4:67426390-67426409 None:intergenic 25.0%
! AACAATATCACTAAAAAGAG+AGG + chr3_4:67426430-67426449 None:intergenic 25.0%
!!! CTCTTTTTAGTGATATTGTT+TGG - chr3_4:67426430-67426449 Msa0516000:intron 25.0%
! CATCAATAATTAAGAAATGG+TGG - chr3_4:67426466-67426485 Msa0516000:intron 25.0%
!! AAATTCGATTTGTGATACTT+CGG - chr3_4:67426946-67426965 Msa0516000:intron 25.0%
!! CGATCCAATAATATTTTCAT+TGG - chr3_4:67427088-67427107 Msa0516000:intron 25.0%
! TTGGCCAATGAAAATATTAT+TGG + chr3_4:67427095-67427114 None:intergenic 25.0%
!! TATTTTCATTGGCCAATAAT+TGG - chr3_4:67427099-67427118 Msa0516000:intron 25.0%
!! ATATTTTCTTTGAATATCCC+AGG + chr3_4:67427146-67427165 None:intergenic 25.0%
! TGGGATATTCAAAGAAAATA+TGG - chr3_4:67427145-67427164 Msa0516000:intron 25.0%
! ATGAACTTGATTGATTGATT+TGG - chr3_4:67427194-67427213 Msa0516000:CDS 25.0%
!! TGAACTTGATTGATTGATTT+GGG - chr3_4:67427195-67427214 Msa0516000:CDS 25.0%
! TATTGTAAACAGTGTACATT+AGG - chr3_4:67427586-67427605 Msa0516000:CDS 25.0%
!! ACTAAACATTGTTTCTCTTA+AGG - chr3_4:67427782-67427801 Msa0516000:CDS 25.0%
! ATATGGTTTAATGAAACTGT+TGG + chr3_4:67427942-67427961 None:intergenic 25.0%
! CAGTTTCATTAAACCATATT+TGG - chr3_4:67427943-67427962 Msa0516000:intron 25.0%
!! GTTTTTAAATTGTGCGATTA+AGG - chr3_4:67428028-67428047 Msa0516000:intron 25.0%
! TATGATCGTGAGTATTTAAA+TGG + chr3_4:67428453-67428472 None:intergenic 25.0%
AGAGAAATTATAGGTGTTTG+AGG + chr3_4:67424035-67424054 None:intergenic 30.0%
TTTCCTTTCTAATTTGGTCT+AGG - chr3_4:67424396-67424415 Msa0516000:CDS 30.0%
TGTTTGCATGTGCATTATTT+AGG - chr3_4:67424419-67424438 Msa0516000:CDS 30.0%
!! ATGCTTAGAGTATGTTTTGA+TGG - chr3_4:67424499-67424518 Msa0516000:intron 30.0%
!!! TTAGAGTATGTTTTGATGGA+GGG - chr3_4:67424503-67424522 Msa0516000:intron 30.0%
! CAATTGATTCTTTGTGCTTA+CGG - chr3_4:67424592-67424611 Msa0516000:intron 30.0%
AACTTTGTATTCAATCCTAG+TGG + chr3_4:67424792-67424811 None:intergenic 30.0%
! GGAAAATTTTCCATCTTCAT+TGG - chr3_4:67424998-67425017 Msa0516000:intron 30.0%
AAGAGGATTTAAACAGTGAT+AGG - chr3_4:67425162-67425181 Msa0516000:CDS 30.0%
AGAGGATTTAAACAGTGATA+GGG - chr3_4:67425163-67425182 Msa0516000:CDS 30.0%
GAGTAAATTGAAAGAAAGTG+TGG + chr3_4:67425486-67425505 None:intergenic 30.0%
TATATGCATGAATTTCAGCA+TGG + chr3_4:67425673-67425692 None:intergenic 30.0%
AACATCATTGACCACTATAT+TGG + chr3_4:67425817-67425836 None:intergenic 30.0%
ATATAGTGGTCAATGATGTT+AGG - chr3_4:67425817-67425836 Msa0516000:intron 30.0%
GTAAATCATCTTTCACTTGA+AGG + chr3_4:67425905-67425924 None:intergenic 30.0%
AGTGAAAGATGATTTACAGA+AGG - chr3_4:67425908-67425927 Msa0516000:CDS 30.0%
TCAAGTAAAGAAAGCAATAG+AGG - chr3_4:67425989-67426008 Msa0516000:CDS 30.0%
! TGTTCAATTCTTTTACAGCT+TGG - chr3_4:67426055-67426074 Msa0516000:CDS 30.0%
ATCTAACTAATGAGTTCTTC+TGG - chr3_4:67426114-67426133 Msa0516000:CDS 30.0%
TAGTCAACTCAACTTATGAT+AGG - chr3_4:67426140-67426159 Msa0516000:intron 30.0%
AGTCAACTCAACTTATGATA+GGG - chr3_4:67426141-67426160 Msa0516000:intron 30.0%
TCAACTTATGATAGGGATTT+AGG - chr3_4:67426148-67426167 Msa0516000:intron 30.0%
! AGAGTATCTACAGTCATATT+TGG - chr3_4:67426225-67426244 Msa0516000:intron 30.0%
CTATATCCTTCTAACTTTGA+TGG - chr3_4:67426264-67426283 Msa0516000:intron 30.0%
ACTACTATTGCTGTGAATAT+TGG + chr3_4:67426304-67426323 None:intergenic 30.0%
AGTTGAGTTTACATGGTTAT+AGG - chr3_4:67426351-67426370 Msa0516000:intron 30.0%
ATCAGAAATTTCAATGGAAG+AGG + chr3_4:67426384-67426403 None:intergenic 30.0%
AAAACAATAATCAGCATGTG+TGG + chr3_4:67426766-67426785 None:intergenic 30.0%
GATGTAAAAATAACTGCTGT+AGG - chr3_4:67426866-67426885 Msa0516000:intron 30.0%
! AATTCGATTTGTGATACTTC+GGG - chr3_4:67426947-67426966 Msa0516000:intron 30.0%
TGTATAGTCCTACCAATTAT+TGG + chr3_4:67427114-67427133 None:intergenic 30.0%
ACTATACAAGATTTAAGCCT+GGG - chr3_4:67427126-67427145 Msa0516000:intron 30.0%
!!! GGTATCTTTTAATTTTGTGC+AGG - chr3_4:67427225-67427244 Msa0516000:CDS 30.0%
! ATAACTCAATCTTAGCTCTT+CGG + chr3_4:67427264-67427283 None:intergenic 30.0%
AGTGTACATTAGGTATTTGT+TGG - chr3_4:67427596-67427615 Msa0516000:CDS 30.0%
GGACTGCTATTAAGAATTTA+AGG - chr3_4:67427908-67427927 Msa0516000:five_prime_UTR 30.0%
CTGCTATTAAGAATTTAAGG+CGG - chr3_4:67427911-67427930 Msa0516000:five_prime_UTR 30.0%
CTATAAATCATGTCTCATCA+AGG + chr3_4:67427976-67427995 None:intergenic 30.0%
CTAGTTCACATCTAATGATT+GGG + chr3_4:67428009-67428028 None:intergenic 30.0%
ACTAGTTCACATCTAATGAT+TGG + chr3_4:67428010-67428029 None:intergenic 30.0%
TCAAACATTAGTTGCTAAGA+GGG + chr3_4:67428115-67428134 None:intergenic 30.0%
ATCAAACATTAGTTGCTAAG+AGG + chr3_4:67428116-67428135 None:intergenic 30.0%
ATGTACATTGTGCAATTTCA+AGG + chr3_4:67428503-67428522 None:intergenic 30.0%
AGATTACATGTAACGTGTAT+AGG + chr3_4:67428531-67428550 None:intergenic 30.0%
TTCTTCCATTCAGAGATCAA+AGG - chr3_4:67424084-67424103 Msa0516000:three_prime_UTR 35.0%
TTGTACCTTTGATCTCTGAA+TGG + chr3_4:67424092-67424111 None:intergenic 35.0%
ACACCTAGACCAAATTAGAA+AGG + chr3_4:67424402-67424421 None:intergenic 35.0%
! GAATCACTGGTTAATCAATG+TGG - chr3_4:67424467-67424486 Msa0516000:intron 35.0%
!!! CTTAGAGTATGTTTTGATGG+AGG - chr3_4:67424502-67424521 Msa0516000:intron 35.0%
GAAACGAAGCTCAATTGAAT+TGG - chr3_4:67424536-67424555 Msa0516000:intron 35.0%
! AAACACTGATTAGGCAAACT+TGG - chr3_4:67424726-67424745 Msa0516000:intron 35.0%
TGATTAGGCAAACTTGGTAT+GGG - chr3_4:67424732-67424751 Msa0516000:intron 35.0%
TGTATTGAAGAGACCGTTAA+CGG - chr3_4:67424827-67424846 Msa0516000:intron 35.0%
CCTTTAAATGCTACCGTTAA+CGG + chr3_4:67424843-67424862 None:intergenic 35.0%
! AGATGGAAAATTTTCCTCAG+TGG + chr3_4:67424994-67425013 None:intergenic 35.0%
! TTTTCCATCTTCATTGGATG+TGG - chr3_4:67425004-67425023 Msa0516000:intron 35.0%
TAATCCACATCCAATGAAGA+TGG + chr3_4:67425011-67425030 None:intergenic 35.0%
!! GATTGGTGATGTAAGTAAAG+AGG - chr3_4:67425145-67425164 Msa0516000:CDS 35.0%
!!! TGGCTTTTGTTTTCTGGTTT+CGG + chr3_4:67425193-67425212 None:intergenic 35.0%
ACCAGAAAACAAAAGCCAAA+CGG - chr3_4:67425195-67425214 Msa0516000:CDS 35.0%
!!! GGATTTCTTTTTTTCCGAGT+TGG + chr3_4:67425278-67425297 None:intergenic 35.0%
ATCTTCTCAATTCTACTCCT+GGG + chr3_4:67425299-67425318 None:intergenic 35.0%
AATCTTCTCAATTCTACTCC+TGG + chr3_4:67425300-67425319 None:intergenic 35.0%
AGAAGATTGACGAACTTCTA+AGG - chr3_4:67425312-67425331 Msa0516000:CDS 35.0%
GAAGATTGACGAACTTCTAA+GGG - chr3_4:67425313-67425332 Msa0516000:CDS 35.0%
TTCAACCTAATGGCTTAAGT+TGG - chr3_4:67425552-67425571 Msa0516000:intron 35.0%
TTGAAGGACGAATAAAGCAA+AGG - chr3_4:67425638-67425657 Msa0516000:intron 35.0%
CTTGATAAGCAAGGAATTCA+AGG - chr3_4:67425765-67425784 Msa0516000:intron 35.0%
GTAAAGAAAGCAATAGAGGT+TGG - chr3_4:67425993-67426012 Msa0516000:CDS 35.0%
TGACTGTAGATACTCTATTG+AGG + chr3_4:67426221-67426240 None:intergenic 35.0%
AGTCATATTTGGCGAATTCA+TGG - chr3_4:67426236-67426255 Msa0516000:intron 35.0%
GTCATATTTGGCGAATTCAT+GGG - chr3_4:67426237-67426256 Msa0516000:intron 35.0%
TCATATTTGGCGAATTCATG+GGG - chr3_4:67426238-67426257 Msa0516000:intron 35.0%
GTTTCTCCATCAAAGTTAGA+AGG + chr3_4:67426273-67426292 None:intergenic 35.0%
ACCATGAAGTTGAGTTTACA+TGG - chr3_4:67426344-67426363 Msa0516000:intron 35.0%
ACCATGTAAACTCAACTTCA+TGG + chr3_4:67426348-67426367 None:intergenic 35.0%
GACAAAGATCTTGAAACCTT+GGG + chr3_4:67426569-67426588 None:intergenic 35.0%
TGACAAAGATCTTGAAACCT+TGG + chr3_4:67426570-67426589 None:intergenic 35.0%
AAGGTTTCAAGATCTTTGTC+AGG - chr3_4:67426569-67426588 Msa0516000:intron 35.0%
! TTTCAACCTACAGTCTGTTT+TGG - chr3_4:67426652-67426671 Msa0516000:CDS 35.0%
TCTTATCCAAAACAGACTGT+AGG + chr3_4:67426661-67426680 None:intergenic 35.0%
! TTGTCGTAAACAGTTTTCTC+GGG + chr3_4:67426837-67426856 None:intergenic 35.0%
! GTTGTCGTAAACAGTTTTCT+CGG + chr3_4:67426838-67426857 None:intergenic 35.0%
TTTCTTCGCTAGAAATAGCA+GGG - chr3_4:67426975-67426994 Msa0516000:intron 35.0%
TTCATTGGCCAATAATTGGT+AGG - chr3_4:67427103-67427122 Msa0516000:intron 35.0%
GACTATACAAGATTTAAGCC+TGG - chr3_4:67427125-67427144 Msa0516000:intron 35.0%
AGTTATCATTTCAGCTTCAG+AGG - chr3_4:67427278-67427297 Msa0516000:CDS 35.0%
! TCTATTATTTCTTCCTCCGT+TGG + chr3_4:67427307-67427326 None:intergenic 35.0%
TTACATCACGGTATCTTTCA+GGG + chr3_4:67427345-67427364 None:intergenic 35.0%
ATTACATCACGGTATCTTTC+AGG + chr3_4:67427346-67427365 None:intergenic 35.0%
AAGATACCGTGATGTAATGA+AGG - chr3_4:67427348-67427367 Msa0516000:CDS 35.0%
TTGATGCCTTCATTACATCA+CGG + chr3_4:67427357-67427376 None:intergenic 35.0%
TCTTGAATGCAGTGATAGAA+GGG + chr3_4:67427383-67427402 None:intergenic 35.0%
ATTGATAAACTCTTCTTGCG+TGG + chr3_4:67427413-67427432 None:intergenic 35.0%
ACGCAAGAAGAGTTTATCAA+TGG - chr3_4:67427412-67427431 Msa0516000:CDS 35.0%
CGCAAGAAGAGTTTATCAAT+GGG - chr3_4:67427413-67427432 Msa0516000:CDS 35.0%
GCAAGAAGAGTTTATCAATG+GGG - chr3_4:67427414-67427433 Msa0516000:CDS 35.0%
TATCACGAGTTGCTAAAAGT+TGG - chr3_4:67427623-67427642 Msa0516000:CDS 35.0%
GATGTTGGAGTATGCAATTA+AGG - chr3_4:67427851-67427870 Msa0516000:CDS 35.0%
AAATCATGTCTCATCAAGGA+AGG + chr3_4:67427972-67427991 None:intergenic 35.0%
TCAACGATATCATACTTCCA+TGG - chr3_4:67428081-67428100 Msa0516000:intron 35.0%
CTCAAACTTGAACATCTCTA+GGG - chr3_4:67428244-67428263 Msa0516000:intron 35.0%
CGTCGCTATGTTGTATAAAT+CGG - chr3_4:67428335-67428354 Msa0516000:intron 35.0%
ATCGTGAGTATTTAAATGGC+CGG + chr3_4:67428449-67428468 None:intergenic 35.0%
TTACATGTAACGTGTATAGG+TGG + chr3_4:67428528-67428547 None:intergenic 35.0%
! TTTTGATGGAGGGTTTCTTG+AGG - chr3_4:67424513-67424532 Msa0516000:intron 40.0%
TTTGATGGAGGGTTTCTTGA+GGG - chr3_4:67424514-67424533 Msa0516000:intron 40.0%
CTGATTAGGCAAACTTGGTA+TGG - chr3_4:67424731-67424750 Msa0516000:intron 40.0%
GTTAACGGTCTCTTCAATAC+AGG + chr3_4:67424828-67424847 None:intergenic 40.0%
CCGTTAACGGTAGCATTTAA+AGG - chr3_4:67424840-67424859 Msa0516000:intron 40.0%
TAAACAGAATGACACAGCGT+TGG - chr3_4:67424866-67424885 Msa0516000:intron 40.0%
!!! TTGGCTGTTTTAACTTGCGT+AGG + chr3_4:67424912-67424931 None:intergenic 40.0%
! TATCCTTTTCTTGTGCGTCT+TGG + chr3_4:67424931-67424950 None:intergenic 40.0%
! CATCACATATATCGGTTGTC+GGG + chr3_4:67425076-67425095 None:intergenic 40.0%
! GCATCACATATATCGGTTGT+CGG + chr3_4:67425077-67425096 None:intergenic 40.0%
AGATCAAAAGAGTCTCTCGA+AGG - chr3_4:67425114-67425133 Msa0516000:intron 40.0%
GATCAAAAGAGTCTCTCGAA+GGG - chr3_4:67425115-67425134 Msa0516000:intron 40.0%
ATCAAAAGAGTCTCTCGAAG+GGG - chr3_4:67425116-67425135 Msa0516000:intron 40.0%
GGATTTAAACAGTGATAGGG+TGG - chr3_4:67425166-67425185 Msa0516000:CDS 40.0%
!!! TCCGTTTGGCTTTTGTTTTC+TGG + chr3_4:67425199-67425218 None:intergenic 40.0%
CTCATCAAGATTCATCCGTT+TGG + chr3_4:67425213-67425232 None:intergenic 40.0%
AACGGATGAATCTTGATGAG+AGG - chr3_4:67425213-67425232 Msa0516000:CDS 40.0%
GTGAAGATGTCATTCCAACT+CGG - chr3_4:67425261-67425280 Msa0516000:CDS 40.0%
CTCGGAAAAAAAGAAATCCC+AGG - chr3_4:67425279-67425298 Msa0516000:CDS 40.0%
TCTAAGGGAATACTCAGTAC+CGG - chr3_4:67425328-67425347 Msa0516000:CDS 40.0%
!! CAAGTTGATGCAACCAATGA+AGG - chr3_4:67425427-67425446 Msa0516000:intron 40.0%
AATGAGCTTCTCACCTTCAT+TGG + chr3_4:67425443-67425462 None:intergenic 40.0%
GCAAGAAGCTTTCAACCTAA+TGG - chr3_4:67425542-67425561 Msa0516000:intron 40.0%
ACTTGCCAACTTAAGCCATT+AGG + chr3_4:67425560-67425579 None:intergenic 40.0%
TTTCATGTTAACTCCCTCTG+AGG - chr3_4:67425608-67425627 Msa0516000:intron 40.0%
AGATGATTTACAGAAGGAGC+TGG - chr3_4:67425914-67425933 Msa0516000:CDS 40.0%
! AGGGATTTAGGACTGAGTAA+CGG - chr3_4:67426160-67426179 Msa0516000:intron 40.0%
!! CTGAGTAACGGTCATTTTCA+TGG - chr3_4:67426172-67426191 Msa0516000:intron 40.0%
ACTTTGATGGAGAAACTCGA+TGG - chr3_4:67426277-67426296 Msa0516000:intron 40.0%
! ATCTTTTGCAGCACAATCTC+CGG - chr3_4:67426496-67426515 Msa0516000:intron 40.0%
! CAGATTTTGCTAATAGCCCA+AGG - chr3_4:67426550-67426569 Msa0516000:intron 40.0%
TTTCAAGATCTTTGTCAGGC+TGG - chr3_4:67426573-67426592 Msa0516000:intron 40.0%
!! TTGATCGTTTTGAGCCAAAC+CGG - chr3_4:67426619-67426638 Msa0516000:CDS 40.0%
CTTTCTTCGCTAGAAATAGC+AGG - chr3_4:67426974-67426993 Msa0516000:intron 40.0%
CAAGTAGCTGAGACTGAAAA+TGG + chr3_4:67427041-67427060 None:intergenic 40.0%
TTCAGTCTCAGCTACTTGTA+AGG - chr3_4:67427043-67427062 Msa0516000:intron 40.0%
TCAGTCTCAGCTACTTGTAA+GGG - chr3_4:67427044-67427063 Msa0516000:intron 40.0%
!! TTGATTGATTTGGGTGTGTC+TGG - chr3_4:67427204-67427223 Msa0516000:CDS 40.0%
TACATCACGGTATCTTTCAG+GGG + chr3_4:67427344-67427363 None:intergenic 40.0%
CTTGAATGCAGTGATAGAAG+GGG + chr3_4:67427382-67427401 None:intergenic 40.0%
GTCTTGAATGCAGTGATAGA+AGG + chr3_4:67427384-67427403 None:intergenic 40.0%
! ATCAATGGGGTTGTTGATGA+TGG - chr3_4:67427427-67427446 Msa0516000:CDS 40.0%
!! TGCTCTTGATGATGTGGTAA+TGG - chr3_4:67427495-67427514 Msa0516000:CDS 40.0%
TCATTACACTTGCTCGAACT+TGG + chr3_4:67427746-67427765 None:intergenic 40.0%
ACATCGTCATTGTGTGTGTT+GGG + chr3_4:67427836-67427855 None:intergenic 40.0%
AACATCGTCATTGTGTGTGT+TGG + chr3_4:67427837-67427856 None:intergenic 40.0%
AACACACACAATGACGATGT+TGG - chr3_4:67427836-67427855 Msa0516000:CDS 40.0%
GTTGGAGTATGCAATTAAGG+CGG - chr3_4:67427854-67427873 Msa0516000:CDS 40.0%
TCAAGGAAGGACACCAAATA+TGG + chr3_4:67427959-67427978 None:intergenic 40.0%
! AGGTTTGGACTTGATGGTAA+GGG - chr3_4:67428197-67428216 Msa0516000:intron 40.0%
! CCTAGAGATGTTCAAGTTTG+AGG + chr3_4:67428246-67428265 None:intergenic 40.0%
CCTCAAACTTGAACATCTCT+AGG - chr3_4:67428243-67428262 Msa0516000:intron 40.0%
! CTTGAACATCTCTAGGGAAA+TGG - chr3_4:67428250-67428269 Msa0516000:intron 40.0%
ACTATGTGACTAGGTAAGGT+GGG + chr3_4:67428407-67428426 None:intergenic 40.0%
TACTATGTGACTAGGTAAGG+TGG + chr3_4:67428408-67428427 None:intergenic 40.0%
CTCTACTATGTGACTAGGTA+AGG + chr3_4:67428411-67428430 None:intergenic 40.0%
CATCACTCTACTATGTGACT+AGG + chr3_4:67428416-67428435 None:intergenic 40.0%
! AGAGTGATGATTTGCATCAC+CGG - chr3_4:67428427-67428446 Msa0516000:intron 40.0%
! TGATGACATTGTGCTGTTGC+AGG - chr3_4:67424665-67424684 Msa0516000:intron 45.0%
! ATTGTGCTGTTGCAGGAACT+TGG - chr3_4:67424672-67424691 Msa0516000:intron 45.0%
ACGGTCTCTTCAATACAGGA+TGG + chr3_4:67424824-67424843 None:intergenic 45.0%
GAGACAGCTCTTGGTTTCTT+AGG + chr3_4:67424972-67424991 None:intergenic 45.0%
TCTCGAAGGGGTAAGAAGAT+TGG - chr3_4:67425128-67425147 Msa0516000:intron 45.0%
!! ATACTCAGTACCGGCTGATT+TGG - chr3_4:67425337-67425356 Msa0516000:CDS 45.0%
TCTAGACTGACCAAATCAGC+CGG + chr3_4:67425350-67425369 None:intergenic 45.0%
!! CTGATTTGGTCAGTCTAGAC+TGG - chr3_4:67425351-67425370 Msa0516000:CDS 45.0%
AAAAACGCATGCTCCGAAGA+AGG + chr3_4:67425404-67425423 None:intergenic 45.0%
!! TGGCTTAAGTTGGCAAGTCA+AGG - chr3_4:67425562-67425581 Msa0516000:intron 45.0%
! CTTCAAGTTCAGACCTCAGA+GGG + chr3_4:67425624-67425643 None:intergenic 45.0%
TTCCAGCGACTTGATAAGCA+AGG - chr3_4:67425756-67425775 Msa0516000:intron 45.0%
TTCCTTGCTTATCAAGTCGC+TGG + chr3_4:67425761-67425780 None:intergenic 45.0%
! TCAGCTATTTCATCCTCCGT+AGG + chr3_4:67425948-67425967 None:intergenic 45.0%
TGATCACGAACAAGACAAGC+CGG + chr3_4:67426518-67426537 None:intergenic 45.0%
TCTTTGTCAGGCTGGAGTTA+AGG - chr3_4:67426581-67426600 Msa0516000:intron 45.0%
CTTTGTCAGGCTGGAGTTAA+GGG - chr3_4:67426582-67426601 Msa0516000:intron 45.0%
TTGAGCCAAACCGGAGATTT+CGG - chr3_4:67426628-67426647 Msa0516000:CDS 45.0%
AGGTTGAAAGCCGAAATCTC+CGG + chr3_4:67426641-67426660 None:intergenic 45.0%
TGTTCCCTTTGGACTTGAGT+CGG - chr3_4:67426722-67426741 Msa0516000:CDS 45.0%
!! CATACCGACTCAAGTCCAAA+GGG + chr3_4:67426729-67426748 None:intergenic 45.0%
!! ACATACCGACTCAAGTCCAA+AGG + chr3_4:67426730-67426749 None:intergenic 45.0%
!! AATGGGGTTGTTGATGATGG+TGG - chr3_4:67427430-67427449 Msa0516000:CDS 45.0%
!! GTTGATGATGGTGGTGTTGA+TGG - chr3_4:67427439-67427458 Msa0516000:CDS 45.0%
!! GTGTTGATGGCGATAACAGA+AGG - chr3_4:67427452-67427471 Msa0516000:CDS 45.0%
!! AAGGCTTGCTCTTGATGATG+TGG - chr3_4:67427489-67427508 Msa0516000:CDS 45.0%
ATGCAATTAAGGCGGCCTAA+AGG - chr3_4:67427862-67427881 Msa0516000:CDS 45.0%
CTAAGAGGGACAAATGACCA+TGG + chr3_4:67428101-67428120 None:intergenic 45.0%
!! GCTTGATTCTCTGAAGCCTA+AGG - chr3_4:67428154-67428173 Msa0516000:intron 45.0%
! TCTGAAGCCTAAGGAGAACT+TGG - chr3_4:67428163-67428182 Msa0516000:intron 45.0%
CTGATCACCAAGTTCTCCTT+AGG + chr3_4:67428173-67428192 None:intergenic 45.0%
! AGAACTTGGTGATCAGACAG+AGG - chr3_4:67428177-67428196 Msa0516000:intron 45.0%
! TTGGTGATCAGACAGAGGTT+TGG - chr3_4:67428182-67428201 Msa0516000:intron 45.0%
AGACAGAGGTTTGGACTTGA+TGG - chr3_4:67428191-67428210 Msa0516000:intron 45.0%
! GAGGTTTGGACTTGATGGTA+AGG - chr3_4:67428196-67428215 Msa0516000:intron 45.0%
TGGTAAGGGTGACAGAACTT+TGG - chr3_4:67428211-67428230 Msa0516000:intron 45.0%
GGTAAGGGTGACAGAACTTT+GGG - chr3_4:67428212-67428231 Msa0516000:intron 45.0%
TACAGAAATACATGTGCCCG+TGG - chr3_4:67428377-67428396 Msa0516000:intron 45.0%
CTGTTTCAAGCTCAGCTGCT+CGG - chr3_4:67424763-67424782 Msa0516000:intron 50.0%
CAGCCAAGACGCACAAGAAA+AGG - chr3_4:67424925-67424944 Msa0516000:intron 50.0%
ACCTCCAGTTCTGCCTTCTT+CGG - chr3_4:67425388-67425407 Msa0516000:intron 50.0%
! CCTTCAAGTTCAGACCTCAG+AGG + chr3_4:67425625-67425644 None:intergenic 50.0%
!! CCTCTGAGGTCTGAACTTGA+AGG - chr3_4:67425622-67425641 Msa0516000:intron 50.0%
GAAAGCCGAAATCTCCGGTT+TGG + chr3_4:67426636-67426655 None:intergenic 50.0%
AACACGTGAGAAGCTTGCGA+GGG + chr3_4:67426706-67426725 None:intergenic 50.0%
AGCTTCTCACGTGTTCCCTT+TGG - chr3_4:67426711-67426730 Msa0516000:CDS 50.0%
TCAGCTTCAGAGGTCACCAA+CGG - chr3_4:67427288-67427307 Msa0516000:CDS 50.0%
GAAGGCAACCTGCTCTACTA+AGG - chr3_4:67427470-67427489 Msa0516000:CDS 50.0%
AGAGCAAGCCTTAGTAGAGC+AGG + chr3_4:67427481-67427500 None:intergenic 50.0%
GTCATTGTGTGTGTTGGGTG+TGG + chr3_4:67427831-67427850 None:intergenic 50.0%
! GGTGAGAAAGCACGAAGTCA+AGG - chr3_4:67428271-67428290 Msa0516000:intron 50.0%
GCTCAAGCATTCAGCTCGAT+TGG - chr3_4:67428304-67428323 Msa0516000:intron 50.0%
TAGGTAAGGTGGGACTACCA+CGG + chr3_4:67428397-67428416 None:intergenic 50.0%
ACCAAGAGCTGTCTCCACTG+AGG - chr3_4:67424977-67424996 Msa0516000:intron 55.0%
TCCTCAGTGGAGACAGCTCT+TGG + chr3_4:67424981-67425000 None:intergenic 55.0%
TCCGAAGAAGGCAGAACTGG+AGG + chr3_4:67425392-67425411 None:intergenic 55.0%
TGCTCCGAAGAAGGCAGAAC+TGG + chr3_4:67425395-67425414 None:intergenic 55.0%
GGAGCTGGAAAGAGAGCCTA+CGG - chr3_4:67425929-67425948 Msa0516000:CDS 55.0%
AGCTTGCGAGGGTCATGGAA+CGG + chr3_4:67426695-67426714 None:intergenic 55.0%
TGAGAAGCTTGCGAGGGTCA+TGG + chr3_4:67426700-67426719 None:intergenic 55.0%
GAACACGTGAGAAGCTTGCG+AGG + chr3_4:67426707-67426726 None:intergenic 55.0%
CAGCCTTAGCTGAGGCCTTT+AGG + chr3_4:67427880-67427899 None:intergenic 55.0%
AGGTAAGGTGGGACTACCAC+GGG + chr3_4:67428396-67428415 None:intergenic 55.0%
TCAGCTGCTCGGACTCCACT+AGG - chr3_4:67424774-67424793 Msa0516000:intron 60.0%
GCTGGAAAGAGAGCCTACGG+AGG - chr3_4:67425932-67425951 Msa0516000:CDS 60.0%
GCTTCAGAGGTCACCAACGG+AGG - chr3_4:67427291-67427310 Msa0516000:CDS 60.0%
CGGCCTAAAGGCCTCAGCTA+AGG - chr3_4:67427874-67427893 Msa0516000:exon 60.0%
AGGCCTCAGCTAAGGCTGCT+TGG - chr3_4:67427882-67427901 Msa0516000:exon 60.0%
GGCCTCAGCTAAGGCTGCTT+GGG - chr3_4:67427883-67427902 Msa0516000:exon 60.0%
GCCTCAGCTAAGGCTGCTTG+GGG - chr3_4:67427884-67427903 Msa0516000:exon 60.0%
ACCCCAAGCAGCCTTAGCTG+AGG + chr3_4:67427888-67427907 None:intergenic 60.0%
TCAGCTAAGGCTGCTTGGGG+TGG - chr3_4:67427887-67427906 Msa0516000:exon 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67424001 67428639 67424001 ID=Msa0516000;Name=Msa0516000
chr3_4 mRNA 67424001 67428639 67424001 ID=Msa0516000-mRNA-1;Parent=Msa0516000;Name=Msa0516000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=168|1|1|1|0.8|0.66|6|287|514
chr3_4 exon 67424001 67424485 67424001 ID=Msa0516000-mRNA-1:exon:17568;Parent=Msa0516000-mRNA-1
chr3_4 exon 67425130 67425393 67425130 ID=Msa0516000-mRNA-1:exon:17567;Parent=Msa0516000-mRNA-1
chr3_4 exon 67425897 67426133 67425897 ID=Msa0516000-mRNA-1:exon:17566;Parent=Msa0516000-mRNA-1
chr3_4 exon 67426597 67426743 67426597 ID=Msa0516000-mRNA-1:exon:17565;Parent=Msa0516000-mRNA-1
chr3_4 exon 67427192 67427953 67427192 ID=Msa0516000-mRNA-1:exon:17564;Parent=Msa0516000-mRNA-1
chr3_4 exon 67428535 67428639 67428535 ID=Msa0516000-mRNA-1:exon:17563;Parent=Msa0516000-mRNA-1
chr3_4 five_prime_UTR 67428535 67428639 67428535 ID=Msa0516000-mRNA-1:five_prime_utr;Parent=Msa0516000-mRNA-1
chr3_4 five_prime_UTR 67427891 67427953 67427891 ID=Msa0516000-mRNA-1:five_prime_utr;Parent=Msa0516000-mRNA-1
chr3_4 CDS 67427192 67427890 67427192 ID=Msa0516000-mRNA-1:cds;Parent=Msa0516000-mRNA-1
chr3_4 CDS 67426597 67426743 67426597 ID=Msa0516000-mRNA-1:cds;Parent=Msa0516000-mRNA-1
chr3_4 CDS 67425897 67426133 67425897 ID=Msa0516000-mRNA-1:cds;Parent=Msa0516000-mRNA-1
chr3_4 CDS 67425130 67425393 67425130 ID=Msa0516000-mRNA-1:cds;Parent=Msa0516000-mRNA-1
chr3_4 CDS 67424288 67424485 67424288 ID=Msa0516000-mRNA-1:cds;Parent=Msa0516000-mRNA-1
chr3_4 three_prime_UTR 67424001 67424287 67424001 ID=Msa0516000-mRNA-1:three_prime_utr;Parent=Msa0516000-mRNA-1
Gene Sequence

>Msa0516000

ATGGGAGTTGTGACTGTTTCAAGCTCAGCTGCTCGGACTCCACTAGGATTGAATACAAAGTTTTCAACTCACCATCCTGTATTGAAGAGACCGTTAACGGTAGCATTTAAAGGAGATAAACAGAATGACACAGCGTTGGTTGCGACTCAAGAGAAAATTCCTACGCAAGTTAAAACAGCCAAGACGCACAAGAAAAGGATAGCAAAAACGAATAAACTACCTAAGAAACCAAGAGCTGTCTCCACTGAGGAAAATTTTCCATCTTCATTGGATGTGGATTATAACGAAGCTGCTGCCATACTTGAAAATATATACAAACTTAGCCCGACAACCGATATATGTGATGCAGATTATATAGAACGTAAGATCAAAAGAGTCTCTCGAAGGGGTAAGAAGATTGGTGATGTAAGTAAAGAGGATTTAAACAGTGATAGGGTGGTCCGAAACCAGAAAACAAAAGCCAAACGGATGAATCTTGATGAGAGGATTGCGTTAAAAACGAGCGACAATAGTGAAGATGTCATTCCAACTCGGAAAAAAAGAAATCCCAGGAGTAGAATTGAGAAGATTGACGAACTTCTAAGGGAATACTCAGTACCGGCTGATTTGGTCAGTCTAGACTGGAAAAAAATGAAAATACCTCCAGTTCTGCCTTCTTCGGAGCATGCGTTTTTGTTCAAGTTGATGCAACCAATGAAGGCACTCCTTCAAGTGAAAGATGATTTACAGAAGGAGCTGGAAAGAGAGCCTACGGAGGATGAAATAGCTGACGCAACAAACATGCGCACTACTCAAGTAAAGAAAGCAATAGAGGTTGGTCGAGCTGCAAGAAATAAGCTAATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAGATATTTTTCAGATTTTGCTAATAGCCCAAGGTTTCAAGATCTTTGTCAGGCTGGAGTTAAGGGACTTATAACATCAATTGATCGTTTTGAGCCAAACCGGAGATTTCGGCTTTCAACCTACAGTCTGTTTTGGATAAGACATTCTATCATCCGTTCCATGACCCTCGCAAGCTTCTCACGTGTTCCCTTTGGACTTGAGTCGGTTAGAGCAGAGATCCGAAGAGCTAAGATTGAGTTATCATTTCAGCTTCAGAGGTCACCAACGGAGGAAGAAATAATAGAAAAAGTTCATGTATCCCCTGAAAGATACCGTGATGTAATGAAGGCATCAAAACCCCTTCTATCACTGCATTCAAGACATCTAACCACGCAAGAAGAGTTTATCAATGGGGTTGTTGATGATGGTGGTGTTGATGGCGATAACAGAAGGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCTCTGAAGCCTAAGGAGAACTTGGTGATCAGACAGAGGTTTGGACTTGATGGTAAGGGTGACAGAACTTTGGGAGAAATTGCCTCAAACTTGAACATCTCTAGGGAAATGGTGAGAAAGCACGAAGTCAAGGCTCTCATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGCTATGTTGTATAA

Protein sequence

>Msa0516000

MGVVTVSSSAARTPLGLNTKFSTHHPVLKRPLTVAFKGDKQNDTALVATQEKIPTQVKTAKTHKKRIAKTNKLPKKPRAVSTEENFPSSLDVDYNEAAAILENIYKLSPTTDICDADYIERKIKRVSRRGKKIGDVSKEDLNSDRVVRNQKTKAKRMNLDERIALKTSDNSEDVIPTRKKRNPRSRIEKIDELLREYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMRTTQVKKAIEVGRAARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLFWIRHSIIRSMTLASFSRVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSPERYRDVMKASKPLLSLHSRHLTTQEEFINGVVDDGGVDGDNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV*