AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375930 MtrunA17_Chr3g0126401 98.249 514 9 0 1 514 1 514 0.0 1030
Msa0375930 MtrunA17_Chr3g0145921 28.819 288 200 3 229 514 287 571 2.75e-33 133
Msa0375930 MtrunA17_Chr7g0264491 31.000 300 202 4 216 513 257 553 3.38e-32 130
Msa0375930 MtrunA17_Chr1g0180881 28.819 288 200 3 216 501 261 545 1.18e-29 122
Msa0375930 MtrunA17_Chr4g0021031 30.565 301 181 10 222 505 204 493 1.46e-23 103
Msa0375930 MtrunA17_Chr3g0090001 32.394 213 140 3 305 514 192 403 3.90e-19 89.7
Msa0375930 MtrunA17_Chr1g0146481 25.954 262 180 6 256 513 296 547 6.00e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375930 AT5G24120.1 61.877 522 186 5 1 514 1 517 0.0 625
Msa0375930 AT5G24120.3 61.877 522 186 5 1 514 1 517 0.0 625
Msa0375930 AT5G24120.2 61.877 522 186 5 1 514 1 517 0.0 625
Msa0375930 AT2G36990.1 31.333 300 201 3 216 513 247 543 1.59e-35 139
Msa0375930 AT1G08540.1 30.903 288 194 3 229 514 285 569 3.78e-34 136
Msa0375930 AT5G13730.1 27.532 316 197 9 215 512 113 414 4.30e-21 95.9
Msa0375930 AT1G64860.1 28.094 299 191 8 222 505 202 491 1.15e-20 95.5
Msa0375930 AT1G64860.2 28.497 193 130 4 222 410 202 390 6.73e-16 80.9
Msa0375930 AT3G53920.1 25.614 285 196 7 237 513 293 569 3.17e-14 75.9

Find 137 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATCGTGAGTATTTAAA+TGG 0.229731 3_1:-75898664 None:intergenic
ATTACATCACGGTATCTTTC+AGG 0.229998 3_1:-75897556 None:intergenic
TTGTTAATCTCTTCTATATA+TGG 0.255988 3_1:+75898816 Msa0375930:three_prime_UTR
AGAAGATTGACGAACTTCTA+AGG 0.267064 3_1:+75895524 Msa0375930:CDS
CCGTTAACGGTAGCATTTAA+AGG 0.276378 3_1:+75895052 Msa0375930:CDS
AAGAGGATTTAAACAGTGAT+AGG 0.297201 3_1:+75895374 Msa0375930:CDS
CCTTTAAATGCTACCGTTAA+CGG 0.304115 3_1:-75895052 None:intergenic
GAGACAGCTCTTGGTTTCTT+AGG 0.309175 3_1:-75895181 None:intergenic
TTGAGCCAAACCGGAGATTT+CGG 0.320769 3_1:+75896841 Msa0375930:CDS
AATGAGCTTCTCACCTTCAT+TGG 0.323733 3_1:-75895652 None:intergenic
ATACTCAGTACCGGCTGATT+TGG 0.341811 3_1:+75895549 Msa0375930:CDS
CTCATCAAGATTCATCCGTT+TGG 0.343384 3_1:-75895422 None:intergenic
GTAAATCATCTTTCACTTGA+AGG 0.343761 3_1:-75896115 None:intergenic
AGCTTCTCACGTGTTCCCTT+TGG 0.354929 3_1:+75896924 Msa0375930:CDS
GTCTTGAATGCAGTGATAGA+AGG 0.357509 3_1:-75897594 None:intergenic
GTTGATGATGGTGGTGTTGA+TGG 0.360239 3_1:+75897652 Msa0375930:CDS
CCTAGAGATGTTCAAGTTTG+AGG 0.363298 3_1:-75898457 None:intergenic
CTTTGTCAGGCTGGAGTTAA+GGG 0.363815 3_1:+75896795 Msa0375930:CDS
TTTCAACCTACAGTCTGTTT+TGG 0.364864 3_1:+75896865 Msa0375930:CDS
TCTTTGTCAGGCTGGAGTTA+AGG 0.368656 3_1:+75896794 Msa0375930:CDS
GAGAATGAAAGAGAAATTAT+AGG 0.379992 3_1:-75894279 None:intergenic
TCCTCAGTGGAGACAGCTCT+TGG 0.384406 3_1:-75895190 None:intergenic
TGCAAGAAATAAGCTAATAA+AGG 0.388641 3_1:+75896235 Msa0375930:CDS
ATCAATGGGGTTGTTGATGA+TGG 0.389488 3_1:+75897640 Msa0375930:CDS
CGTCGCTATGTTGTATAAAT+CGG 0.401881 3_1:+75898549 Msa0375930:exon
TAACTGAAATTCGAAAATTA+CGG 0.403208 3_1:-75894237 None:intergenic
TGCTCCGAAGAAGGCAGAAC+TGG 0.403451 3_1:-75895604 None:intergenic
AATCTAGACAAAGAATCTAA+TGG 0.405112 3_1:-75894301 None:intergenic
ACCTCCAGTTCTGCCTTCTT+CGG 0.405115 3_1:+75895600 Msa0375930:CDS
AGAGAAATTATAGGTGTTTG+AGG 0.409965 3_1:-75894270 None:intergenic
ATAATCTGCATCACATATAT+CGG 0.410715 3_1:-75895293 None:intergenic
CTTGAACATCTCTAGGGAAA+TGG 0.415901 3_1:+75898464 Msa0375930:CDS
AGACAGAGGTTTGGACTTGA+TGG 0.418320 3_1:+75898405 Msa0375930:CDS
CAGCCAAGACGCACAAGAAA+AGG 0.419331 3_1:+75895137 Msa0375930:CDS
CCTCAAACTTGAACATCTCT+AGG 0.422830 3_1:+75898457 Msa0375930:CDS
ATGTACATTGTGCAATTTCA+AGG 0.427633 3_1:-75898714 None:intergenic
TTTCTTTCTAAACACTGATT+AGG 0.428773 3_1:+75894929 Msa0375930:five_prime_UTR
TCTATTATTTCTTCCTCCGT+TGG 0.435604 3_1:-75897517 None:intergenic
AATCTTCTCAATTCTACTCC+TGG 0.438326 3_1:-75895509 None:intergenic
CTGATTAGGCAAACTTGGTA+TGG 0.439102 3_1:+75894943 Msa0375930:exon
GGTAAGGGTGACAGAACTTT+GGG 0.439878 3_1:+75898426 Msa0375930:CDS
AGATTACATGTAACGTGTAT+AGG 0.456918 3_1:-75898742 None:intergenic
TTTCAAGATCTTTGTCAGGC+TGG 0.460093 3_1:+75896786 Msa0375930:CDS
CGCAAGAAGAGTTTATCAAT+GGG 0.461379 3_1:+75897626 Msa0375930:CDS
GAAAGCCGAAATCTCCGGTT+TGG 0.463173 3_1:-75896846 None:intergenic
TTGGTGATCAGACAGAGGTT+TGG 0.464083 3_1:+75898396 Msa0375930:CDS
AAACACTGATTAGGCAAACT+TGG 0.465435 3_1:+75894938 Msa0375930:five_prime_UTR
TGACAAAGATCTTGAAACCT+TGG 0.467823 3_1:-75896780 None:intergenic
CTGATCACCAAGTTCTCCTT+AGG 0.468005 3_1:-75898384 None:intergenic
GCTCAAGCATTCAGCTCGAT+TGG 0.469057 3_1:+75898518 Msa0375930:CDS
AAGGTTTCAAGATCTTTGTC+AGG 0.472724 3_1:+75896782 Msa0375930:CDS
TGGTAAGGGTGACAGAACTT+TGG 0.477364 3_1:+75898425 Msa0375930:CDS
ATCTTCTCAATTCTACTCCT+GGG 0.478589 3_1:-75895508 None:intergenic
ATAACTCAATCTTAGCTCTT+CGG 0.481173 3_1:-75897474 None:intergenic
TCAAGTAAAGAAAGCAATAG+AGG 0.482166 3_1:+75896202 Msa0375930:CDS
CATCACATATATCGGTTGTC+GGG 0.482870 3_1:-75895285 None:intergenic
TTACATCACGGTATCTTTCA+GGG 0.483805 3_1:-75897555 None:intergenic
TGTATTGAAGAGACCGTTAA+CGG 0.487228 3_1:+75895039 Msa0375930:CDS
CTGATTTGGTCAGTCTAGAC+TGG 0.488397 3_1:+75895563 Msa0375930:CDS
GCATCACATATATCGGTTGT+CGG 0.491957 3_1:-75895286 None:intergenic
TAATCCACATCCAATGAAGA+TGG 0.497477 3_1:-75895220 None:intergenic
TCTCGAAGGGGTAAGAAGAT+TGG 0.504636 3_1:+75895340 Msa0375930:CDS
GAAGGCAACCTGCTCTACTA+AGG 0.506636 3_1:+75897683 Msa0375930:CDS
TTGTACCTTTGATCTCTGAA+TGG 0.508503 3_1:-75894327 None:intergenic
AGAGCAAGCCTTAGTAGAGC+AGG 0.510037 3_1:-75897691 None:intergenic
CTCTACTATGTGACTAGGTA+AGG 0.512361 3_1:-75898622 None:intergenic
GTTAACGGTCTCTTCAATAC+AGG 0.512611 3_1:-75895037 None:intergenic
ACGCAAGAAGAGTTTATCAA+TGG 0.515058 3_1:+75897625 Msa0375930:CDS
TGAGAAGCTTGCGAGGGTCA+TGG 0.515197 3_1:-75896910 None:intergenic
AGATGATTTACAGAAGGAGC+TGG 0.516579 3_1:+75896127 Msa0375930:CDS
ATTGTGCTGTTGCAGGAACT+TGG 0.521028 3_1:+75894884 Msa0375930:intron
GATTGGTGATGTAAGTAAAG+AGG 0.522341 3_1:+75895357 Msa0375930:CDS
GAGGTTTGGACTTGATGGTA+AGG 0.523710 3_1:+75898410 Msa0375930:CDS
CTGTTTCAAGCTCAGCTGCT+CGG 0.525455 3_1:+75894975 Msa0375930:CDS
GACAAAGATCTTGAAACCTT+GGG 0.527279 3_1:-75896779 None:intergenic
ATCGTGAGTATTTAAATGGC+CGG 0.531263 3_1:-75898660 None:intergenic
GTAAAGAAAGCAATAGAGGT+TGG 0.531566 3_1:+75896206 Msa0375930:CDS
TCTGAAGCCTAAGGAGAACT+TGG 0.533811 3_1:+75898377 Msa0375930:CDS
TCTTGAATGCAGTGATAGAA+GGG 0.536462 3_1:-75897593 None:intergenic
GAAGATTGACGAACTTCTAA+GGG 0.538367 3_1:+75895525 Msa0375930:CDS
CATCACTCTACTATGTGACT+AGG 0.539134 3_1:-75898627 None:intergenic
GCTTGATTCTCTGAAGCCTA+AGG 0.542662 3_1:+75898368 Msa0375930:intron
CTCAAACTTGAACATCTCTA+GGG 0.544621 3_1:+75898458 Msa0375930:CDS
AGTTATCATTTCAGCTTCAG+AGG 0.545216 3_1:+75897491 Msa0375930:CDS
ACCAGAAAACAAAAGCCAAA+CGG 0.546934 3_1:+75895407 Msa0375930:CDS
CAAGTTGATGCAACCAATGA+AGG 0.548325 3_1:+75895639 Msa0375930:CDS
GGAGCTGGAAAGAGAGCCTA+CGG 0.552589 3_1:+75896142 Msa0375930:CDS
AAGATACCGTGATGTAATGA+AGG 0.553790 3_1:+75897561 Msa0375930:CDS
TGTTCCCTTTGGACTTGAGT+CGG 0.554834 3_1:+75896935 Msa0375930:CDS
AATGGGGTTGTTGATGATGG+TGG 0.565643 3_1:+75897643 Msa0375930:CDS
AGAGGATTTAAACAGTGATA+GGG 0.568935 3_1:+75895375 Msa0375930:CDS
AGTGAAAGATGATTTACAGA+AGG 0.573532 3_1:+75896121 Msa0375930:CDS
TCAGCTGCTCGGACTCCACT+AGG 0.575229 3_1:+75894986 Msa0375930:CDS
TACTATGTGACTAGGTAAGG+TGG 0.576171 3_1:-75898619 None:intergenic
AGAGTGATGATTTGCATCAC+CGG 0.577731 3_1:+75898641 Msa0375930:three_prime_UTR
CATACCGACTCAAGTCCAAA+GGG 0.580195 3_1:-75896939 None:intergenic
GGTGAGAAAGCACGAAGTCA+AGG 0.585592 3_1:+75898485 Msa0375930:CDS
GAACACGTGAGAAGCTTGCG+AGG 0.589931 3_1:-75896917 None:intergenic
TTCTTCCATTCAGAGATCAA+AGG 0.591840 3_1:+75894322 Msa0375930:five_prime_UTR
AGGTTGAAAGCCGAAATCTC+CGG 0.593857 3_1:-75896851 None:intergenic
GTGTTGATGGCGATAACAGA+AGG 0.598234 3_1:+75897665 Msa0375930:CDS
GATCAAAAGAGTCTCTCGAA+GGG 0.598531 3_1:+75895327 Msa0375930:CDS
AACTTTGTATTCAATCCTAG+TGG 0.599283 3_1:-75895001 None:intergenic
AGGTTTGGACTTGATGGTAA+GGG 0.603110 3_1:+75898411 Msa0375930:CDS
TGATTAGGCAAACTTGGTAT+GGG 0.604520 3_1:+75894944 Msa0375930:exon
TCAGCTATTTCATCCTCCGT+AGG 0.604604 3_1:-75896158 None:intergenic
TCTAAGGGAATACTCAGTAC+CGG 0.605704 3_1:+75895540 Msa0375930:CDS
AGCTTGCGAGGGTCATGGAA+CGG 0.606319 3_1:-75896905 None:intergenic
ACATACCGACTCAAGTCCAA+AGG 0.607252 3_1:-75896940 None:intergenic
ACTATGTGACTAGGTAAGGT+GGG 0.607499 3_1:-75898618 None:intergenic
AGGTAAGGTGGGACTACCAC+GGG 0.608326 3_1:-75898607 None:intergenic
TTGATGCCTTCATTACATCA+CGG 0.616848 3_1:-75897567 None:intergenic
TACATCACGGTATCTTTCAG+GGG 0.616885 3_1:-75897554 None:intergenic
AACGGATGAATCTTGATGAG+AGG 0.617893 3_1:+75895425 Msa0375930:CDS
ATTGATAAACTCTTCTTGCG+TGG 0.621610 3_1:-75897623 None:intergenic
AGATCAAAAGAGTCTCTCGA+AGG 0.624213 3_1:+75895326 Msa0375930:CDS
TCTTATCCAAAACAGACTGT+AGG 0.625554 3_1:-75896871 None:intergenic
AAGGCTTGCTCTTGATGATG+TGG 0.625750 3_1:+75897702 Msa0375930:CDS
GTGAAGATGTCATTCCAACT+CGG 0.626818 3_1:+75895473 Msa0375930:CDS
TAAACAGAATGACACAGCGT+TGG 0.627600 3_1:+75895078 Msa0375930:CDS
CTTGAATGCAGTGATAGAAG+GGG 0.628428 3_1:-75897592 None:intergenic
TCCGAAGAAGGCAGAACTGG+AGG 0.632944 3_1:-75895601 None:intergenic
TCAGCTTCAGAGGTCACCAA+CGG 0.634098 3_1:+75897501 Msa0375930:CDS
GGATTTAAACAGTGATAGGG+TGG 0.634412 3_1:+75895378 Msa0375930:CDS
TGATCACGAACAAGACAAGC+CGG 0.636977 3_1:-75896728 None:intergenic
TCTAGACTGACCAAATCAGC+CGG 0.641619 3_1:-75895559 None:intergenic
ATCAAAAGAGTCTCTCGAAG+GGG 0.655049 3_1:+75895328 Msa0375930:CDS
TACAGAAATACATGTGCCCG+TGG 0.657647 3_1:+75898591 Msa0375930:three_prime_UTR
AACACGTGAGAAGCTTGCGA+GGG 0.668557 3_1:-75896916 None:intergenic
ACGGTCTCTTCAATACAGGA+TGG 0.670415 3_1:-75895033 None:intergenic
TAGGTAAGGTGGGACTACCA+CGG 0.670858 3_1:-75898608 None:intergenic
TTACATGTAACGTGTATAGG+TGG 0.675107 3_1:-75898739 None:intergenic
GCTTCAGAGGTCACCAACGG+AGG 0.677471 3_1:+75897504 Msa0375930:CDS
AGAACTTGGTGATCAGACAG+AGG 0.691541 3_1:+75898391 Msa0375930:CDS
GCAAGAAGAGTTTATCAATG+GGG 0.710931 3_1:+75897627 Msa0375930:CDS
ACCAAGAGCTGTCTCCACTG+AGG 0.712371 3_1:+75895189 Msa0375930:CDS
GCTGGAAAGAGAGCCTACGG+AGG 0.718077 3_1:+75896145 Msa0375930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTGAAACTAAATTGAA+TGG + chr3_1:75894776-75894795 Msa0375930:intron 15.0%
!!! TTTGTATATATTTTCAAGTA+TGG - chr3_1:75895260-75895279 None:intergenic 15.0%
!! TTACATCAATAATTAAGAAA+TGG + chr3_1:75896676-75896695 Msa0375930:intron 15.0%
!! CAATTTATTACAATACATAT+AGG - chr3_1:75897125-75897144 None:intergenic 15.0%
!! AAAAATTGTGAAATATCATT+AGG + chr3_1:75897885-75897904 Msa0375930:intron 15.0%
!! AATAGAATGAATCAAATCAA+AGG + chr3_1:75894527-75894546 Msa0375930:intron 20.0%
!!! ATTGTTTTTCCTTTCTAATT+TGG + chr3_1:75894602-75894621 Msa0375930:intron 20.0%
!! TACCAATGATTATATGTATA+AGG + chr3_1:75894657-75894676 Msa0375930:intron 20.0%
!! TTCCTTATACATATAATCAT+TGG - chr3_1:75894662-75894681 None:intergenic 20.0%
!! TGAAATTCATGCATATAATA+TGG + chr3_1:75895888-75895907 Msa0375930:intron 20.0%
!!! AGATACATTTGTTAATTTTC+AGG + chr3_1:75896088-75896107 Msa0375930:intron 20.0%
!! GACTTTGTAATCTTTAAATT+TGG + chr3_1:75896617-75896636 Msa0375930:intron 20.0%
!! TTTATTACAATACATATAGG+TGG - chr3_1:75897122-75897141 None:intergenic 20.0%
!! CAATGAAAATATTATTGGAT+CGG - chr3_1:75897303-75897322 None:intergenic 20.0%
!! TTGTTAATCTCTTCTATATA+TGG + chr3_1:75898816-75898835 Msa0375930:three_prime_UTR 20.0%
! GAGAATGAAAGAGAAATTAT+AGG - chr3_1:75894282-75894301 None:intergenic 25.0%
! AATCTAGACAAAGAATCTAA+TGG - chr3_1:75894304-75894323 None:intergenic 25.0%
! TTATATGTATAAGGAATCAC+TGG + chr3_1:75894666-75894685 Msa0375930:intron 25.0%
!! TTTCTTTCTAAACACTGATT+AGG + chr3_1:75894929-75894948 Msa0375930:five_prime_UTR 25.0%
! ATAATCTGCATCACATATAT+CGG - chr3_1:75895296-75895315 None:intergenic 25.0%
! TATTGGAAATATTGTTGACA+TGG - chr3_1:75896013-75896032 None:intergenic 25.0%
! CAACAATATTTCCAATATAG+TGG + chr3_1:75896016-75896035 Msa0375930:intron 25.0%
! TGCAAGAAATAAGCTAATAA+AGG + chr3_1:75896235-75896254 Msa0375930:CDS 25.0%
! AAAGTCATCAGAAATTTCAA+TGG - chr3_1:75896603-75896622 None:intergenic 25.0%
! AACAATATCACTAAAAAGAG+AGG - chr3_1:75896643-75896662 None:intergenic 25.0%
!!! CTCTTTTTAGTGATATTGTT+TGG + chr3_1:75896643-75896662 Msa0375930:intron 25.0%
! CATCAATAATTAAGAAATGG+TGG + chr3_1:75896679-75896698 Msa0375930:intron 25.0%
!! AAATTCGATTTGTGATACTT+CGG + chr3_1:75897159-75897178 Msa0375930:intron 25.0%
!! CGATCCAATAATATTTTCAT+TGG + chr3_1:75897301-75897320 Msa0375930:intron 25.0%
! TTGGCCAATGAAAATATTAT+TGG - chr3_1:75897308-75897327 None:intergenic 25.0%
!! TATTTTCATTGGCCAATAAT+TGG + chr3_1:75897312-75897331 Msa0375930:intron 25.0%
!! ATATTTTCTTTGAATATCCC+AGG - chr3_1:75897359-75897378 None:intergenic 25.0%
! TGGGATATTCAAAGAAAATA+TGG + chr3_1:75897358-75897377 Msa0375930:intron 25.0%
! ATGAACTTGATTGATTGATT+TGG + chr3_1:75897407-75897426 Msa0375930:intron 25.0%
!! TGAACTTGATTGATTGATTT+GGG + chr3_1:75897408-75897427 Msa0375930:intron 25.0%
! TATTGTAAACAGTGTACATT+AGG + chr3_1:75897799-75897818 Msa0375930:intron 25.0%
!! ACTAAACATTGTTTCTCTTA+AGG + chr3_1:75897995-75898014 Msa0375930:intron 25.0%
! ATATGGTTTAATGAAACTGT+TGG - chr3_1:75898155-75898174 None:intergenic 25.0%
! CAGTTTCATTAAACCATATT+TGG + chr3_1:75898156-75898175 Msa0375930:intron 25.0%
! TAGTTCACATCTAATGATTT+GGG - chr3_1:75898222-75898241 None:intergenic 25.0%
!! GTTTTTAAATTGTGCGATTA+AGG + chr3_1:75898242-75898261 Msa0375930:intron 25.0%
! TATGATCGTGAGTATTTAAA+TGG - chr3_1:75898667-75898686 None:intergenic 25.0%
AGAGAAATTATAGGTGTTTG+AGG - chr3_1:75894273-75894292 None:intergenic 30.0%
TTTCCTTTCTAATTTGGTCT+AGG + chr3_1:75894608-75894627 Msa0375930:intron 30.0%
TGTTTGCATGTGCATTATTT+AGG + chr3_1:75894631-75894650 Msa0375930:intron 30.0%
!! ATGCTTAGAGTATGTTTTGA+TGG + chr3_1:75894711-75894730 Msa0375930:intron 30.0%
!!! TTAGAGTATGTTTTGATGGA+GGG + chr3_1:75894715-75894734 Msa0375930:intron 30.0%
! CAATTGATTCTTTGTGCTTA+CGG + chr3_1:75894804-75894823 Msa0375930:intron 30.0%
AACTTTGTATTCAATCCTAG+TGG - chr3_1:75895004-75895023 None:intergenic 30.0%
! GGAAAATTTTCCATCTTCAT+TGG + chr3_1:75895210-75895229 Msa0375930:CDS 30.0%
AAGAGGATTTAAACAGTGAT+AGG + chr3_1:75895374-75895393 Msa0375930:CDS 30.0%
AGAGGATTTAAACAGTGATA+GGG + chr3_1:75895375-75895394 Msa0375930:CDS 30.0%
GAGTAAATTGAAAGAAAGTG+TGG - chr3_1:75895698-75895717 None:intergenic 30.0%
TATATGCATGAATTTCAGCA+TGG - chr3_1:75895885-75895904 None:intergenic 30.0%
AACATCATTGACCACTATAT+TGG - chr3_1:75896030-75896049 None:intergenic 30.0%
ATATAGTGGTCAATGATGTT+AGG + chr3_1:75896030-75896049 Msa0375930:intron 30.0%
GTAAATCATCTTTCACTTGA+AGG - chr3_1:75896118-75896137 None:intergenic 30.0%
AGTGAAAGATGATTTACAGA+AGG + chr3_1:75896121-75896140 Msa0375930:CDS 30.0%
TCAAGTAAAGAAAGCAATAG+AGG + chr3_1:75896202-75896221 Msa0375930:CDS 30.0%
! TGTTCAATTCTTTTACAGCT+TGG + chr3_1:75896268-75896287 Msa0375930:intron 30.0%
ATCTAACTAATGAGTTCTTC+TGG + chr3_1:75896327-75896346 Msa0375930:intron 30.0%
TAGTCAACTCAACTTATGAT+AGG + chr3_1:75896353-75896372 Msa0375930:intron 30.0%
AGTCAACTCAACTTATGATA+GGG + chr3_1:75896354-75896373 Msa0375930:intron 30.0%
TCAACTTATGATAGGGATTT+AGG + chr3_1:75896361-75896380 Msa0375930:intron 30.0%
! AGAGTATCTACAGTCATATT+TGG + chr3_1:75896438-75896457 Msa0375930:intron 30.0%
CTATATCCTTCTAACTTTGA+TGG + chr3_1:75896477-75896496 Msa0375930:intron 30.0%
ACTACTATTGCTGTGAATAT+TGG - chr3_1:75896517-75896536 None:intergenic 30.0%
AGTTGAGTTTACATGGTTAT+AGG + chr3_1:75896564-75896583 Msa0375930:intron 30.0%
ATCAGAAATTTCAATGGAAG+AGG - chr3_1:75896597-75896616 None:intergenic 30.0%
AAAACAATAATCAGCATGTG+TGG - chr3_1:75896979-75896998 None:intergenic 30.0%
GATGTAAAAATAACTGCTGT+AGG + chr3_1:75897079-75897098 Msa0375930:intron 30.0%
! AATTCGATTTGTGATACTTC+GGG + chr3_1:75897160-75897179 Msa0375930:intron 30.0%
TGTATAGTCCTACCAATTAT+TGG - chr3_1:75897327-75897346 None:intergenic 30.0%
ACTATACAAGATTTAAGCCT+GGG + chr3_1:75897339-75897358 Msa0375930:intron 30.0%
!!! GGTATCTTTTAATTTTGTGC+AGG + chr3_1:75897438-75897457 Msa0375930:intron 30.0%
! ATAACTCAATCTTAGCTCTT+CGG - chr3_1:75897477-75897496 None:intergenic 30.0%
AGTGTACATTAGGTATTTGT+TGG + chr3_1:75897809-75897828 Msa0375930:intron 30.0%
GGACTGCTATTAAGAATTTA+AGG + chr3_1:75898121-75898140 Msa0375930:intron 30.0%
CTGCTATTAAGAATTTAAGG+CGG + chr3_1:75898124-75898143 Msa0375930:intron 30.0%
CTATAAATCATGTCTCATCA+AGG - chr3_1:75898189-75898208 None:intergenic 30.0%
CTAGTTCACATCTAATGATT+TGG - chr3_1:75898223-75898242 None:intergenic 30.0%
TCAAACATTAGTTGCTAAGA+GGG - chr3_1:75898329-75898348 None:intergenic 30.0%
ATCAAACATTAGTTGCTAAG+AGG - chr3_1:75898330-75898349 None:intergenic 30.0%
ATGTACATTGTGCAATTTCA+AGG - chr3_1:75898717-75898736 None:intergenic 30.0%
AGATTACATGTAACGTGTAT+AGG - chr3_1:75898745-75898764 None:intergenic 30.0%
TTCTTCCATTCAGAGATCAA+AGG + chr3_1:75894322-75894341 Msa0375930:five_prime_UTR 35.0%
TTGTACCTTTGATCTCTGAA+TGG - chr3_1:75894330-75894349 None:intergenic 35.0%
ACACCTAGACCAAATTAGAA+AGG - chr3_1:75894614-75894633 None:intergenic 35.0%
! GAATCACTGGTTAATCAATG+TGG + chr3_1:75894679-75894698 Msa0375930:intron 35.0%
!!! CTTAGAGTATGTTTTGATGG+AGG + chr3_1:75894714-75894733 Msa0375930:intron 35.0%
GAAACGAAGCTCAATTGAAT+TGG + chr3_1:75894748-75894767 Msa0375930:intron 35.0%
! AAACACTGATTAGGCAAACT+TGG + chr3_1:75894938-75894957 Msa0375930:five_prime_UTR 35.0%
TGATTAGGCAAACTTGGTAT+GGG + chr3_1:75894944-75894963 Msa0375930:exon 35.0%
TGTATTGAAGAGACCGTTAA+CGG + chr3_1:75895039-75895058 Msa0375930:CDS 35.0%
CCTTTAAATGCTACCGTTAA+CGG - chr3_1:75895055-75895074 None:intergenic 35.0%
! AGATGGAAAATTTTCCTCAG+TGG - chr3_1:75895206-75895225 None:intergenic 35.0%
! TTTTCCATCTTCATTGGATG+TGG + chr3_1:75895216-75895235 Msa0375930:CDS 35.0%
TAATCCACATCCAATGAAGA+TGG - chr3_1:75895223-75895242 None:intergenic 35.0%
!! GATTGGTGATGTAAGTAAAG+AGG + chr3_1:75895357-75895376 Msa0375930:CDS 35.0%
!!! TGGCTTTTGTTTTCTGGTTT+CGG - chr3_1:75895405-75895424 None:intergenic 35.0%
ACCAGAAAACAAAAGCCAAA+CGG + chr3_1:75895407-75895426 Msa0375930:CDS 35.0%
!!! GGATTTCTTTTTTTCCGAGT+TGG - chr3_1:75895490-75895509 None:intergenic 35.0%
ATCTTCTCAATTCTACTCCT+GGG - chr3_1:75895511-75895530 None:intergenic 35.0%
AATCTTCTCAATTCTACTCC+TGG - chr3_1:75895512-75895531 None:intergenic 35.0%
AGAAGATTGACGAACTTCTA+AGG + chr3_1:75895524-75895543 Msa0375930:CDS 35.0%
GAAGATTGACGAACTTCTAA+GGG + chr3_1:75895525-75895544 Msa0375930:CDS 35.0%
TTGAAGGACGAATAAAGCAA+AGG + chr3_1:75895850-75895869 Msa0375930:intron 35.0%
CTTGATAAGCAAGGAATTCA+AGG + chr3_1:75895978-75895997 Msa0375930:intron 35.0%
GTAAAGAAAGCAATAGAGGT+TGG + chr3_1:75896206-75896225 Msa0375930:CDS 35.0%
TGACTGTAGATACTCTATTG+AGG - chr3_1:75896434-75896453 None:intergenic 35.0%
AGTCATATTTGGCGAATTCA+TGG + chr3_1:75896449-75896468 Msa0375930:intron 35.0%
GTCATATTTGGCGAATTCAT+GGG + chr3_1:75896450-75896469 Msa0375930:intron 35.0%
TCATATTTGGCGAATTCATG+GGG + chr3_1:75896451-75896470 Msa0375930:intron 35.0%
GTTTCTCCATCAAAGTTAGA+AGG - chr3_1:75896486-75896505 None:intergenic 35.0%
ACCATGAAGTTGAGTTTACA+TGG + chr3_1:75896557-75896576 Msa0375930:intron 35.0%
ACCATGTAAACTCAACTTCA+TGG - chr3_1:75896561-75896580 None:intergenic 35.0%
GACAAAGATCTTGAAACCTT+GGG - chr3_1:75896782-75896801 None:intergenic 35.0%
TGACAAAGATCTTGAAACCT+TGG - chr3_1:75896783-75896802 None:intergenic 35.0%
AAGGTTTCAAGATCTTTGTC+AGG + chr3_1:75896782-75896801 Msa0375930:CDS 35.0%
! TTTCAACCTACAGTCTGTTT+TGG + chr3_1:75896865-75896884 Msa0375930:CDS 35.0%
TCTTATCCAAAACAGACTGT+AGG - chr3_1:75896874-75896893 None:intergenic 35.0%
! TTGTCGTAAACAGTTTTCTC+GGG - chr3_1:75897050-75897069 None:intergenic 35.0%
! GTTGTCGTAAACAGTTTTCT+CGG - chr3_1:75897051-75897070 None:intergenic 35.0%
TTTCTTCGCTAGAAATAGCA+GGG + chr3_1:75897188-75897207 Msa0375930:intron 35.0%
TTCATTGGCCAATAATTGGT+AGG + chr3_1:75897316-75897335 Msa0375930:intron 35.0%
GACTATACAAGATTTAAGCC+TGG + chr3_1:75897338-75897357 Msa0375930:intron 35.0%
AGTTATCATTTCAGCTTCAG+AGG + chr3_1:75897491-75897510 Msa0375930:CDS 35.0%
! TCTATTATTTCTTCCTCCGT+TGG - chr3_1:75897520-75897539 None:intergenic 35.0%
TTACATCACGGTATCTTTCA+GGG - chr3_1:75897558-75897577 None:intergenic 35.0%
ATTACATCACGGTATCTTTC+AGG - chr3_1:75897559-75897578 None:intergenic 35.0%
AAGATACCGTGATGTAATGA+AGG + chr3_1:75897561-75897580 Msa0375930:CDS 35.0%
TTGATGCCTTCATTACATCA+CGG - chr3_1:75897570-75897589 None:intergenic 35.0%
TCTTGAATGCAGTGATAGAA+GGG - chr3_1:75897596-75897615 None:intergenic 35.0%
ATTGATAAACTCTTCTTGCG+TGG - chr3_1:75897626-75897645 None:intergenic 35.0%
ACGCAAGAAGAGTTTATCAA+TGG + chr3_1:75897625-75897644 Msa0375930:CDS 35.0%
CGCAAGAAGAGTTTATCAAT+GGG + chr3_1:75897626-75897645 Msa0375930:CDS 35.0%
GCAAGAAGAGTTTATCAATG+GGG + chr3_1:75897627-75897646 Msa0375930:CDS 35.0%
TATCACGAGTTGCTAAAAGT+TGG + chr3_1:75897836-75897855 Msa0375930:intron 35.0%
GATGTTGGAGTATGCAATTA+AGG + chr3_1:75898064-75898083 Msa0375930:intron 35.0%
AAATCATGTCTCATCAAGGA+AGG - chr3_1:75898185-75898204 None:intergenic 35.0%
TCAACGATATCATACTTCCA+TGG + chr3_1:75898295-75898314 Msa0375930:intron 35.0%
CTCAAACTTGAACATCTCTA+GGG + chr3_1:75898458-75898477 Msa0375930:CDS 35.0%
CGTCGCTATGTTGTATAAAT+CGG + chr3_1:75898549-75898568 Msa0375930:exon 35.0%
ATCGTGAGTATTTAAATGGC+CGG - chr3_1:75898663-75898682 None:intergenic 35.0%
TTACATGTAACGTGTATAGG+TGG - chr3_1:75898742-75898761 None:intergenic 35.0%
! TTTTGATGGAGGGTTTCTTG+AGG + chr3_1:75894725-75894744 Msa0375930:intron 40.0%
TTTGATGGAGGGTTTCTTGA+GGG + chr3_1:75894726-75894745 Msa0375930:intron 40.0%
CTGATTAGGCAAACTTGGTA+TGG + chr3_1:75894943-75894962 Msa0375930:exon 40.0%
GTTAACGGTCTCTTCAATAC+AGG - chr3_1:75895040-75895059 None:intergenic 40.0%
CCGTTAACGGTAGCATTTAA+AGG + chr3_1:75895052-75895071 Msa0375930:CDS 40.0%
TAAACAGAATGACACAGCGT+TGG + chr3_1:75895078-75895097 Msa0375930:CDS 40.0%
!!! TTGGCTGTTTTAACTTGCGT+AGG - chr3_1:75895124-75895143 None:intergenic 40.0%
! TATCCTTTTCTTGTGCGTCT+TGG - chr3_1:75895143-75895162 None:intergenic 40.0%
! CATCACATATATCGGTTGTC+GGG - chr3_1:75895288-75895307 None:intergenic 40.0%
! GCATCACATATATCGGTTGT+CGG - chr3_1:75895289-75895308 None:intergenic 40.0%
AGATCAAAAGAGTCTCTCGA+AGG + chr3_1:75895326-75895345 Msa0375930:CDS 40.0%
GATCAAAAGAGTCTCTCGAA+GGG + chr3_1:75895327-75895346 Msa0375930:CDS 40.0%
ATCAAAAGAGTCTCTCGAAG+GGG + chr3_1:75895328-75895347 Msa0375930:CDS 40.0%
GGATTTAAACAGTGATAGGG+TGG + chr3_1:75895378-75895397 Msa0375930:CDS 40.0%
!!! TCCGTTTGGCTTTTGTTTTC+TGG - chr3_1:75895411-75895430 None:intergenic 40.0%
CTCATCAAGATTCATCCGTT+TGG - chr3_1:75895425-75895444 None:intergenic 40.0%
AACGGATGAATCTTGATGAG+AGG + chr3_1:75895425-75895444 Msa0375930:CDS 40.0%
GTGAAGATGTCATTCCAACT+CGG + chr3_1:75895473-75895492 Msa0375930:CDS 40.0%
CTCGGAAAAAAAGAAATCCC+AGG + chr3_1:75895491-75895510 Msa0375930:CDS 40.0%
TCTAAGGGAATACTCAGTAC+CGG + chr3_1:75895540-75895559 Msa0375930:CDS 40.0%
!! CAAGTTGATGCAACCAATGA+AGG + chr3_1:75895639-75895658 Msa0375930:CDS 40.0%
AATGAGCTTCTCACCTTCAT+TGG - chr3_1:75895655-75895674 None:intergenic 40.0%
AGCAAGAAGCTTTCAACCTA+AGG + chr3_1:75895753-75895772 Msa0375930:intron 40.0%
GCAAGAAGCTTTCAACCTAA+GGG + chr3_1:75895754-75895773 Msa0375930:intron 40.0%
TTCAACCTAAGGGCTTAAGT+TGG + chr3_1:75895764-75895783 Msa0375930:intron 40.0%
TTTCATGTTAACTCCCTCTG+AGG + chr3_1:75895820-75895839 Msa0375930:intron 40.0%
AGATGATTTACAGAAGGAGC+TGG + chr3_1:75896127-75896146 Msa0375930:CDS 40.0%
! AGGGATTTAGGACTGAGTAA+CGG + chr3_1:75896373-75896392 Msa0375930:intron 40.0%
!! CTGAGTAACGGTCATTTTCA+TGG + chr3_1:75896385-75896404 Msa0375930:intron 40.0%
ACTTTGATGGAGAAACTCGA+TGG + chr3_1:75896490-75896509 Msa0375930:intron 40.0%
! ATCTTTTGCAGCACAATCTC+CGG + chr3_1:75896709-75896728 Msa0375930:intron 40.0%
! CAGATTTTGCTAATAGCCCA+AGG + chr3_1:75896763-75896782 Msa0375930:CDS 40.0%
TTTCAAGATCTTTGTCAGGC+TGG + chr3_1:75896786-75896805 Msa0375930:CDS 40.0%
!! TTGATCGTTTTGAGCCAAAC+CGG + chr3_1:75896832-75896851 Msa0375930:CDS 40.0%
CTTTCTTCGCTAGAAATAGC+AGG + chr3_1:75897187-75897206 Msa0375930:intron 40.0%
CAAGTAGCTGAGACTGAAAA+TGG - chr3_1:75897254-75897273 None:intergenic 40.0%
TTCAGTCTCAGCTACTTGTA+AGG + chr3_1:75897256-75897275 Msa0375930:intron 40.0%
TCAGTCTCAGCTACTTGTAA+GGG + chr3_1:75897257-75897276 Msa0375930:intron 40.0%
!! TTGATTGATTTGGGTGTGTC+TGG + chr3_1:75897417-75897436 Msa0375930:intron 40.0%
TACATCACGGTATCTTTCAG+GGG - chr3_1:75897557-75897576 None:intergenic 40.0%
CTTGAATGCAGTGATAGAAG+GGG - chr3_1:75897595-75897614 None:intergenic 40.0%
GTCTTGAATGCAGTGATAGA+AGG - chr3_1:75897597-75897616 None:intergenic 40.0%
! ATCAATGGGGTTGTTGATGA+TGG + chr3_1:75897640-75897659 Msa0375930:CDS 40.0%
!! TGCTCTTGATGATGTGGTAA+TGG + chr3_1:75897708-75897727 Msa0375930:intron 40.0%
TCATTACACTTGCTCGAACT+TGG - chr3_1:75897959-75897978 None:intergenic 40.0%
ACATCGTCATTGTGTGTGTT+GGG - chr3_1:75898049-75898068 None:intergenic 40.0%
AACATCGTCATTGTGTGTGT+TGG - chr3_1:75898050-75898069 None:intergenic 40.0%
AACACACACAATGACGATGT+TGG + chr3_1:75898049-75898068 Msa0375930:intron 40.0%
GTTGGAGTATGCAATTAAGG+CGG + chr3_1:75898067-75898086 Msa0375930:intron 40.0%
TCAAGGAAGGACACCAAATA+TGG - chr3_1:75898172-75898191 None:intergenic 40.0%
! AGGTTTGGACTTGATGGTAA+GGG + chr3_1:75898411-75898430 Msa0375930:CDS 40.0%
! CCTAGAGATGTTCAAGTTTG+AGG - chr3_1:75898460-75898479 None:intergenic 40.0%
CCTCAAACTTGAACATCTCT+AGG + chr3_1:75898457-75898476 Msa0375930:CDS 40.0%
! CTTGAACATCTCTAGGGAAA+TGG + chr3_1:75898464-75898483 Msa0375930:CDS 40.0%
ACTATGTGACTAGGTAAGGT+GGG - chr3_1:75898621-75898640 None:intergenic 40.0%
TACTATGTGACTAGGTAAGG+TGG - chr3_1:75898622-75898641 None:intergenic 40.0%
CTCTACTATGTGACTAGGTA+AGG - chr3_1:75898625-75898644 None:intergenic 40.0%
CATCACTCTACTATGTGACT+AGG - chr3_1:75898630-75898649 None:intergenic 40.0%
! AGAGTGATGATTTGCATCAC+CGG + chr3_1:75898641-75898660 Msa0375930:three_prime_UTR 40.0%
! TGATGACATTGTGCTGTTGC+AGG + chr3_1:75894877-75894896 Msa0375930:intron 45.0%
! ATTGTGCTGTTGCAGGAACT+TGG + chr3_1:75894884-75894903 Msa0375930:intron 45.0%
ACGGTCTCTTCAATACAGGA+TGG - chr3_1:75895036-75895055 None:intergenic 45.0%
GAGACAGCTCTTGGTTTCTT+AGG - chr3_1:75895184-75895203 None:intergenic 45.0%
TCTCGAAGGGGTAAGAAGAT+TGG + chr3_1:75895340-75895359 Msa0375930:CDS 45.0%
!! ATACTCAGTACCGGCTGATT+TGG + chr3_1:75895549-75895568 Msa0375930:CDS 45.0%
TCTAGACTGACCAAATCAGC+CGG - chr3_1:75895562-75895581 None:intergenic 45.0%
!! CTGATTTGGTCAGTCTAGAC+TGG + chr3_1:75895563-75895582 Msa0375930:CDS 45.0%
AAAAACGCATGCTCCGAAGA+AGG - chr3_1:75895616-75895635 None:intergenic 45.0%
ACTTGCCAACTTAAGCCCTT+AGG - chr3_1:75895772-75895791 None:intergenic 45.0%
! CTTCAAGTTCAGACCTCAGA+GGG - chr3_1:75895836-75895855 None:intergenic 45.0%
TTCCAGCGACTTGATAAGCA+AGG + chr3_1:75895969-75895988 Msa0375930:intron 45.0%
TTCCTTGCTTATCAAGTCGC+TGG - chr3_1:75895974-75895993 None:intergenic 45.0%
! TCAGCTATTTCATCCTCCGT+AGG - chr3_1:75896161-75896180 None:intergenic 45.0%
TGATCACGAACAAGACAAGC+CGG - chr3_1:75896731-75896750 None:intergenic 45.0%
TCTTTGTCAGGCTGGAGTTA+AGG + chr3_1:75896794-75896813 Msa0375930:CDS 45.0%
CTTTGTCAGGCTGGAGTTAA+GGG + chr3_1:75896795-75896814 Msa0375930:CDS 45.0%
TTGAGCCAAACCGGAGATTT+CGG + chr3_1:75896841-75896860 Msa0375930:CDS 45.0%
AGGTTGAAAGCCGAAATCTC+CGG - chr3_1:75896854-75896873 None:intergenic 45.0%
TGTTCCCTTTGGACTTGAGT+CGG + chr3_1:75896935-75896954 Msa0375930:CDS 45.0%
!! CATACCGACTCAAGTCCAAA+GGG - chr3_1:75896942-75896961 None:intergenic 45.0%
!! ACATACCGACTCAAGTCCAA+AGG - chr3_1:75896943-75896962 None:intergenic 45.0%
!! AATGGGGTTGTTGATGATGG+TGG + chr3_1:75897643-75897662 Msa0375930:CDS 45.0%
!! GTTGATGATGGTGGTGTTGA+TGG + chr3_1:75897652-75897671 Msa0375930:CDS 45.0%
!! GTGTTGATGGCGATAACAGA+AGG + chr3_1:75897665-75897684 Msa0375930:CDS 45.0%
!! AAGGCTTGCTCTTGATGATG+TGG + chr3_1:75897702-75897721 Msa0375930:CDS 45.0%
ATGCAATTAAGGCGGCCTAA+AGG + chr3_1:75898075-75898094 Msa0375930:intron 45.0%
CTAAGAGGGACAAATGACCA+TGG - chr3_1:75898315-75898334 None:intergenic 45.0%
!! GCTTGATTCTCTGAAGCCTA+AGG + chr3_1:75898368-75898387 Msa0375930:intron 45.0%
! TCTGAAGCCTAAGGAGAACT+TGG + chr3_1:75898377-75898396 Msa0375930:CDS 45.0%
CTGATCACCAAGTTCTCCTT+AGG - chr3_1:75898387-75898406 None:intergenic 45.0%
! AGAACTTGGTGATCAGACAG+AGG + chr3_1:75898391-75898410 Msa0375930:CDS 45.0%
! TTGGTGATCAGACAGAGGTT+TGG + chr3_1:75898396-75898415 Msa0375930:CDS 45.0%
AGACAGAGGTTTGGACTTGA+TGG + chr3_1:75898405-75898424 Msa0375930:CDS 45.0%
! GAGGTTTGGACTTGATGGTA+AGG + chr3_1:75898410-75898429 Msa0375930:CDS 45.0%
TGGTAAGGGTGACAGAACTT+TGG + chr3_1:75898425-75898444 Msa0375930:CDS 45.0%
GGTAAGGGTGACAGAACTTT+GGG + chr3_1:75898426-75898445 Msa0375930:CDS 45.0%
TACAGAAATACATGTGCCCG+TGG + chr3_1:75898591-75898610 Msa0375930:three_prime_UTR 45.0%
CTGTTTCAAGCTCAGCTGCT+CGG + chr3_1:75894975-75894994 Msa0375930:CDS 50.0%
CAGCCAAGACGCACAAGAAA+AGG + chr3_1:75895137-75895156 Msa0375930:CDS 50.0%
ACCTCCAGTTCTGCCTTCTT+CGG + chr3_1:75895600-75895619 Msa0375930:CDS 50.0%
!! GGGCTTAAGTTGGCAAGTCA+AGG + chr3_1:75895774-75895793 Msa0375930:intron 50.0%
! CCTTCAAGTTCAGACCTCAG+AGG - chr3_1:75895837-75895856 None:intergenic 50.0%
!! CCTCTGAGGTCTGAACTTGA+AGG + chr3_1:75895834-75895853 Msa0375930:intron 50.0%
GAAAGCCGAAATCTCCGGTT+TGG - chr3_1:75896849-75896868 None:intergenic 50.0%
AACACGTGAGAAGCTTGCGA+GGG - chr3_1:75896919-75896938 None:intergenic 50.0%
AGCTTCTCACGTGTTCCCTT+TGG + chr3_1:75896924-75896943 Msa0375930:CDS 50.0%
TCAGCTTCAGAGGTCACCAA+CGG + chr3_1:75897501-75897520 Msa0375930:CDS 50.0%
GAAGGCAACCTGCTCTACTA+AGG + chr3_1:75897683-75897702 Msa0375930:CDS 50.0%
AGAGCAAGCCTTAGTAGAGC+AGG - chr3_1:75897694-75897713 None:intergenic 50.0%
GTCATTGTGTGTGTTGGGTG+TGG - chr3_1:75898044-75898063 None:intergenic 50.0%
! GGTGAGAAAGCACGAAGTCA+AGG + chr3_1:75898485-75898504 Msa0375930:CDS 50.0%
GCTCAAGCATTCAGCTCGAT+TGG + chr3_1:75898518-75898537 Msa0375930:CDS 50.0%
TAGGTAAGGTGGGACTACCA+CGG - chr3_1:75898611-75898630 None:intergenic 50.0%
ACCAAGAGCTGTCTCCACTG+AGG + chr3_1:75895189-75895208 Msa0375930:CDS 55.0%
TCCTCAGTGGAGACAGCTCT+TGG - chr3_1:75895193-75895212 None:intergenic 55.0%
TCCGAAGAAGGCAGAACTGG+AGG - chr3_1:75895604-75895623 None:intergenic 55.0%
TGCTCCGAAGAAGGCAGAAC+TGG - chr3_1:75895607-75895626 None:intergenic 55.0%
GGAGCTGGAAAGAGAGCCTA+CGG + chr3_1:75896142-75896161 Msa0375930:CDS 55.0%
AGCTTGCGAGGGTCATGGAA+CGG - chr3_1:75896908-75896927 None:intergenic 55.0%
TGAGAAGCTTGCGAGGGTCA+TGG - chr3_1:75896913-75896932 None:intergenic 55.0%
GAACACGTGAGAAGCTTGCG+AGG - chr3_1:75896920-75896939 None:intergenic 55.0%
CAGCCTTAGCTGAGGCCTTT+AGG - chr3_1:75898093-75898112 None:intergenic 55.0%
AGGTAAGGTGGGACTACCAC+GGG - chr3_1:75898610-75898629 None:intergenic 55.0%
TCAGCTGCTCGGACTCCACT+AGG + chr3_1:75894986-75895005 Msa0375930:CDS 60.0%
GCTGGAAAGAGAGCCTACGG+AGG + chr3_1:75896145-75896164 Msa0375930:CDS 60.0%
GCTTCAGAGGTCACCAACGG+AGG + chr3_1:75897504-75897523 Msa0375930:CDS 60.0%
CGGCCTAAAGGCCTCAGCTA+AGG + chr3_1:75898087-75898106 Msa0375930:intron 60.0%
AGGCCTCAGCTAAGGCTGCT+TGG + chr3_1:75898095-75898114 Msa0375930:intron 60.0%
GGCCTCAGCTAAGGCTGCTT+GGG + chr3_1:75898096-75898115 Msa0375930:intron 60.0%
GCCTCAGCTAAGGCTGCTTG+GGG + chr3_1:75898097-75898116 Msa0375930:intron 60.0%
ACCCCAAGCAGCCTTAGCTG+AGG - chr3_1:75898101-75898120 None:intergenic 60.0%
TCAGCTAAGGCTGCTTGGGG+TGG + chr3_1:75898100-75898119 Msa0375930:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 75894239 75898853 75894239 ID=Msa0375930;Name=Msa0375930
chr3_1 mRNA 75894239 75898853 75894239 ID=Msa0375930-mRNA-1;Parent=Msa0375930;Name=Msa0375930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=168|1|1|1|0.8|0.66|6|287|514
chr3_1 exon 75894239 75894343 75894239 ID=Msa0375930-mRNA-1:exon:17858;Parent=Msa0375930-mRNA-1
chr3_1 exon 75894899 75895660 75894899 ID=Msa0375930-mRNA-1:exon:17859;Parent=Msa0375930-mRNA-1
chr3_1 exon 75896110 75896256 75896110 ID=Msa0375930-mRNA-1:exon:17860;Parent=Msa0375930-mRNA-1
chr3_1 exon 75896720 75896956 75896720 ID=Msa0375930-mRNA-1:exon:17861;Parent=Msa0375930-mRNA-1
chr3_1 exon 75897460 75897723 75897460 ID=Msa0375930-mRNA-1:exon:17862;Parent=Msa0375930-mRNA-1
chr3_1 exon 75898369 75898853 75898369 ID=Msa0375930-mRNA-1:exon:17863;Parent=Msa0375930-mRNA-1
chr3_1 five_prime_UTR 75894239 75894343 75894239 ID=Msa0375930-mRNA-1:five_prime_utr;Parent=Msa0375930-mRNA-1
chr3_1 five_prime_UTR 75894899 75894961 75894899 ID=Msa0375930-mRNA-1:five_prime_utr;Parent=Msa0375930-mRNA-1
chr3_1 CDS 75894962 75895660 75894962 ID=Msa0375930-mRNA-1:cds;Parent=Msa0375930-mRNA-1
chr3_1 CDS 75896110 75896256 75896110 ID=Msa0375930-mRNA-1:cds;Parent=Msa0375930-mRNA-1
chr3_1 CDS 75896720 75896956 75896720 ID=Msa0375930-mRNA-1:cds;Parent=Msa0375930-mRNA-1
chr3_1 CDS 75897460 75897723 75897460 ID=Msa0375930-mRNA-1:cds;Parent=Msa0375930-mRNA-1
chr3_1 CDS 75898369 75898566 75898369 ID=Msa0375930-mRNA-1:cds;Parent=Msa0375930-mRNA-1
chr3_1 three_prime_UTR 75898567 75898853 75898567 ID=Msa0375930-mRNA-1:three_prime_utr;Parent=Msa0375930-mRNA-1
Gene Sequence

>Msa0375930

ATGGGAGTTGTGACTGTTTCAAGCTCAGCTGCTCGGACTCCACTAGGATTGAATACAAAGTTTTCAACTCACCATCCTGTATTGAAGAGACCGTTAACGGTAGCATTTAAAGGAGATAAACAGAATGACACAGCGTTGGTTGCGACTCAAGAGAAAATTCCTACGCAAGTTAAAACAGCCAAGACGCACAAGAAAAGGATAGCAAAAACGAATAAACTACCTAAGAAACCAAGAGCTGTCTCCACTGAGGAAAATTTTCCATCTTCATTGGATGTGGATTATAACGAAGCTGCTGCCATACTTGAAAATATATACAAACTTAGCCCGACAACCGATATATGTGATGCAGATTATATAGAACGTAAGATCAAAAGAGTCTCTCGAAGGGGTAAGAAGATTGGTGATGTAAGTAAAGAGGATTTAAACAGTGATAGGGTGGTCCGAAACCAGAAAACAAAAGCCAAACGGATGAATCTTGATGAGAGGATTGCGTTAAAAACGAGCGACAATAGTGAAGATGTCATTCCAACTCGGAAAAAAAGAAATCCCAGGAGTAGAATTGAGAAGATTGACGAACTTCTAAGGGAATACTCAGTACCGGCTGATTTGGTCAGTCTAGACTGGAAAAAAATGAAAATACCTCCAGTTCTGCCTTCTTCGGAGCATGCGTTTTTGTTCAAGTTGATGCAACCAATGAAGGCACTCCTTCAAGTGAAAGATGATTTACAGAAGGAGCTGGAAAGAGAGCCTACGGAGGATGAAATAGCTGACGCAACAAACATGCGCACTACTCAAGTAAAGAAAGCAATAGAGGTTGGTCGAGCTGCAAGAAATAAGCTAATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAGATATTTTTCAGATTTTGCTAATAGCCCAAGGTTTCAAGATCTTTGTCAGGCTGGAGTTAAGGGACTTATAACATCAATTGATCGTTTTGAGCCAAACCGGAGATTTCGGCTTTCAACCTACAGTCTGTTTTGGATAAGACATTCTATCATCCGTTCCATGACCCTCGCAAGCTTCTCACGTGTTCCCTTTGGACTTGAGTCGGTTAGAGCAGAGATCCGAAGAGCTAAGATTGAGTTATCATTTCAGCTTCAGAGGTCACCAACGGAGGAAGAAATAATAGAAAAAGTTCATGTATCCCCTGAAAGATACCGTGATGTAATGAAGGCATCAAAACCCCTTCTATCACTGCATTCAAGACATCTAACCACGCAAGAAGAGTTTATCAATGGGGTTGTTGATGATGGTGGTGTTGATGGCGATAACAGAAGGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCTCTGAAGCCTAAGGAGAACTTGGTGATCAGACAGAGGTTTGGACTTGATGGTAAGGGTGACAGAACTTTGGGAGAAATTGCCTCAAACTTGAACATCTCTAGGGAAATGGTGAGAAAGCACGAAGTCAAGGCTCTCATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGCTATGTTGTATAA

Protein sequence

>Msa0375930

MGVVTVSSSAARTPLGLNTKFSTHHPVLKRPLTVAFKGDKQNDTALVATQEKIPTQVKTAKTHKKRIAKTNKLPKKPRAVSTEENFPSSLDVDYNEAAAILENIYKLSPTTDICDADYIERKIKRVSRRGKKIGDVSKEDLNSDRVVRNQKTKAKRMNLDERIALKTSDNSEDVIPTRKKRNPRSRIEKIDELLREYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMRTTQVKKAIEVGRAARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLFWIRHSIIRSMTLASFSRVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSPERYRDVMKASKPLLSLHSRHLTTQEEFINGVVDDGGVDGDNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV*