AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0736560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736560 MtrunA17_Chr5g0434001 92.610 636 6 1 1 636 13 607 0.0 1201
Msa0736560 MtrunA17_Chr8g0375501 72.320 625 131 2 12 636 9 591 0.0 919
Msa0736560 MtrunA17_Chr6g0480551 71.975 628 133 2 9 636 4 588 0.0 916
Msa0736560 MtrunA17_Chr4g0026371 46.003 613 286 3 24 636 22 589 0.0 550
Msa0736560 MtrunA17_Chr8g0380651 39.095 619 318 8 26 636 22 589 9.13e-144 430
Msa0736560 MtrunA17_Chr2g0277491 39.482 618 315 9 26 636 18 583 2.40e-143 429
Msa0736560 MtrunA17_Chr8g0342031 30.792 682 377 10 3 636 14 648 2.74e-108 340
Msa0736560 MtrunA17_Chr1g0150181 30.568 687 376 12 1 636 1 637 9.78e-103 325
Msa0736560 MtrunA17_Chr3g0136881 30.200 649 359 9 35 636 35 636 2.92e-98 314
Msa0736560 MtrunA17_Chr4g0065301 26.222 675 379 17 31 636 32 656 2.32e-72 246
Msa0736560 MtrunA17_Chr5g0448371 25.526 713 404 17 1 636 3 665 5.25e-68 234
Msa0736560 MtrunA17_Chr3g0120461 27.542 472 286 9 171 636 238 659 8.32e-56 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736560 AT2G01970.1 72.375 619 129 2 18 636 16 592 0.0 914
Msa0736560 AT5G37310.1 71.701 629 136 2 8 636 7 593 0.0 914
Msa0736560 AT5G37310.2 71.701 629 136 2 8 636 7 593 0.0 914
Msa0736560 AT1G14670.1 72.170 636 133 3 1 636 1 592 0.0 902
Msa0736560 AT1G08350.3 45.079 630 300 5 8 636 5 589 0.0 563
Msa0736560 AT1G08350.2 45.079 630 300 5 8 636 5 589 0.0 563
Msa0736560 AT1G08350.1 44.161 548 261 4 90 636 5 508 4.26e-164 479
Msa0736560 AT1G08350.4 41.924 582 283 5 8 588 5 532 1.01e-161 474
Msa0736560 AT1G10950.1 37.948 614 324 8 29 636 27 589 1.72e-136 412
Msa0736560 AT3G13772.1 31.050 657 347 9 33 636 38 641 1.20e-107 339
Msa0736560 AT1G55130.1 31.050 657 347 10 33 636 34 637 5.90e-104 329
Msa0736560 AT5G10840.1 29.619 682 385 9 3 636 14 648 1.38e-99 318
Msa0736560 AT5G25100.1 29.051 685 389 9 2 636 7 644 2.26e-98 315
Msa0736560 AT2G24170.1 30.892 628 341 9 56 636 56 637 3.31e-98 314
Msa0736560 AT5G25100.2 29.954 651 359 9 36 636 48 651 2.33e-96 310
Msa0736560 AT5G35160.1 28.913 460 268 9 186 636 221 630 1.58e-56 202
Msa0736560 AT5G35160.2 28.913 460 268 9 186 636 249 658 2.07e-56 202
Msa0736560 AT5G35160.3 28.913 460 268 9 186 636 249 658 2.07e-56 202
Msa0736560 AT5G35160.4 28.913 460 268 9 186 636 249 658 2.07e-56 202
Msa0736560 AT4G12650.1 27.679 448 270 8 195 636 253 652 9.44e-55 198
Msa0736560 AT2G24170.2 29.050 358 203 6 56 366 56 409 3.60e-46 170

Find 129 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTAACCTCACCTTTAT+TGG 0.159809 5_1:+53090824 Msa0736560:CDS
TTCCTTTGTGGTGGATCAAC+TGG 0.175262 5_1:+53091638 Msa0736560:CDS
ATTAAGCAGTGATAGAAATT+TGG 0.227532 5_1:-53091974 None:intergenic
ACTATGATGACTTGCCAATT+TGG 0.269300 5_1:+53088985 Msa0736560:CDS
ACCTCACCTTTATTGGTATT+GGG 0.275560 5_1:+53090831 Msa0736560:CDS
TCAACTGGGTTGTTCATATA+TGG 0.277084 5_1:+53091653 Msa0736560:CDS
AACCTCACCTTTATTGGTAT+TGG 0.284277 5_1:+53090830 Msa0736560:CDS
TGCATTTCAGGTGAAAATTT+TGG 0.287409 5_1:+53090671 Msa0736560:intron
ACTTCCATCCAGTCTCTTCT+TGG 0.288713 5_1:-53089655 None:intergenic
TTGGTATTGGGTGGGATTGC+TGG 0.299301 5_1:+53090843 Msa0736560:CDS
CTATGATGACTTGCCAATTT+GGG 0.300228 5_1:+53088986 Msa0736560:CDS
GTAGTAGAGTTCAATGAAAA+TGG 0.321529 5_1:-53090994 None:intergenic
GATATTAGGTCTTTCCTTTG+TGG 0.336277 5_1:+53091626 Msa0736560:intron
TCATCAAGTGCTTCTTCATC+TGG 0.337189 5_1:-53089632 None:intergenic
GAACCTAAATAAGTAGTAAA+AGG 0.339878 5_1:-53090360 None:intergenic
AATGAACAAAATGCTGTATA+TGG 0.340162 5_1:-53091051 None:intergenic
CCCTTCAATCATGTAATAGA+AGG 0.351238 5_1:-53090274 None:intergenic
TTACGGTACCAAGGTAGTTT+AGG 0.351664 5_1:-53090927 None:intergenic
AGCATCACATTCATAGCTTC+AGG 0.355880 5_1:+53092075 Msa0736560:three_prime_UTR
ATCCTCACTCTCACATCATT+TGG 0.357975 5_1:+53089262 Msa0736560:CDS
CTTCCAAGGAAACCCCAAAT+TGG 0.359340 5_1:-53088999 None:intergenic
ATATTTATGCTTGCTCTAGT+TGG 0.366853 5_1:+53090159 Msa0736560:CDS
TATGGTTTCTTTCTTATGCT+TGG 0.371120 5_1:+53091764 Msa0736560:CDS
GCATTAACGTCTGGCATTGC+CGG 0.378297 5_1:+53090237 Msa0736560:CDS
TAGTGCTGCAGTGGAGTTAT+AGG 0.383154 5_1:-53090763 None:intergenic
ATCAAGAATTCAAGTTTGTA+AGG 0.385654 5_1:-53088864 None:intergenic
ATCCCACCCAATACCAATAA+AGG 0.387694 5_1:-53090837 None:intergenic
CAGATATTCCATTTGAGAAA+AGG 0.390734 5_1:+53089219 Msa0736560:CDS
TTGCCAATTTGGGGTTTCCT+TGG 0.391409 5_1:+53088996 Msa0736560:CDS
ATTTCACATATTCTGTCAAA+TGG 0.396091 5_1:+53089189 Msa0736560:CDS
TTCGCCGCAGCACTTGGAAC+AGG 0.404698 5_1:+53089722 Msa0736560:CDS
CCCACCTTGTTTGCATAAAA+CGG 0.409711 5_1:-53087621 None:intergenic
AAACTAACCTGGTGAACAAA+AGG 0.409921 5_1:-53088677 None:intergenic
GGAAAAGTCAACGACATGTT+TGG 0.412145 5_1:+53087506 Msa0736560:CDS
GCGAACAAAGACTTAAATCT+TGG 0.421824 5_1:-53089704 None:intergenic
CACATCATTTGGAAATCCAT+TGG 0.423796 5_1:+53089273 Msa0736560:CDS
GTTTATGCTGTCTAAGATGA+TGG 0.423947 5_1:-53090313 None:intergenic
GAAGGAAGCTGCAGAATAAC+CGG 0.424677 5_1:-53090256 None:intergenic
TCCACTGCAGCACTACCCTT+TGG 0.427646 5_1:+53090771 Msa0736560:CDS
AACAAAGCTCCCCTGTTGTA+TGG 0.432106 5_1:-53090192 None:intergenic
TCCTTCTATTACATGATTGA+AGG 0.433770 5_1:+53090273 Msa0736560:CDS
CAGCAAAATCTCATTGCAAA+TGG 0.434387 5_1:+53091913 Msa0736560:three_prime_UTR
GGGAGCTTTGTTTACTGCAC+TGG 0.435481 5_1:+53090203 Msa0736560:CDS
CCGTAAAACTCTTCCTCAAA+TGG 0.437640 5_1:+53090944 Msa0736560:CDS
TCTGAGCTATTCACACTTGA+GGG 0.440042 5_1:-53091837 None:intergenic
TTTCTTATGCTTGGAACTGT+GGG 0.441101 5_1:+53091773 Msa0736560:CDS
TTATTTAGGTTCCTCGAACC+TGG 0.445372 5_1:+53090371 Msa0736560:CDS
TCATTGATTGTTGTGAATCC+AGG 0.445708 5_1:-53090389 None:intergenic
GTCAAGTCCACAACAGCATT+CGG 0.447696 5_1:-53089143 None:intergenic
AATCTCCCTCGGATACTTGT+TGG 0.451259 5_1:-53090904 None:intergenic
CACCTTTATTGGTATTGGGT+GGG 0.453576 5_1:+53090835 Msa0736560:CDS
CATCAGTTTCAAATCTTCCA+AGG 0.455164 5_1:-53089013 None:intergenic
CTTTCTTATGCTTGGAACTG+TGG 0.458480 5_1:+53091772 Msa0736560:CDS
GGTTTACTGAAGAGTAGTAT+AGG 0.458814 5_1:+53091934 Msa0736560:three_prime_UTR
GAGAATCATGGCAAGGAATC+CGG 0.464820 5_1:-53089336 None:intergenic
GAAGAAAAGAAAGAAGATCT+TGG 0.467281 5_1:+53088807 Msa0736560:CDS
TCTTTGTTCGCCGCAGCACT+TGG 0.467861 5_1:+53089716 Msa0736560:CDS
GTTACTGTTCTTCTCTTGAC+CGG 0.473664 5_1:+53089317 Msa0736560:CDS
ATTAGGTCTTTCCTTTGTGG+TGG 0.477997 5_1:+53091629 Msa0736560:intron
ATCTAACCTGGGATTATGAA+AGG 0.482130 5_1:-53087646 None:intergenic
TCCTTTGTGGTGGATCAACT+GGG 0.485374 5_1:+53091639 Msa0736560:CDS
TACATGGCTTGCATTTGCTA+TGG 0.488624 5_1:+53091746 Msa0736560:CDS
TTTATTGAATGCAGAAAATG+TGG 0.491207 5_1:+53088785 Msa0736560:intron
ACTACATATTTGCCAGTGTG+TGG 0.492038 5_1:+53091012 Msa0736560:CDS
CATGCAAGATCAGATATGTC+TGG 0.493757 5_1:+53091695 Msa0736560:CDS
AACTCTTCCTCAAATGGCTA+TGG 0.495729 5_1:+53090950 Msa0736560:CDS
TTTATTTGAAATTATAGAAG+AGG 0.496168 5_1:+53092048 Msa0736560:three_prime_UTR
GTCATATACGCATTAACGTC+TGG 0.498273 5_1:+53090228 Msa0736560:CDS
TTAACTGGTAGTCTATTCTC+TGG 0.501357 5_1:+53090696 Msa0736560:CDS
CTACATATTTGCCAGTGTGT+GGG 0.507683 5_1:+53091013 Msa0736560:CDS
CTTCCTCAAATGGCTATGGC+TGG 0.509056 5_1:+53090954 Msa0736560:CDS
TCAGATCATCGTTATAAAGA+AGG 0.510924 5_1:+53087588 Msa0736560:CDS
AATCCAGCCATAGCCATTTG+AGG 0.511166 5_1:-53090957 None:intergenic
AGAAGATAGAGAGGTAAATG+TGG 0.520334 5_1:+53089166 Msa0736560:CDS
TATTCCATTTGAGAAAAGGT+TGG 0.520532 5_1:+53089223 Msa0736560:CDS
TGGGACCCTTTCATAATCCC+AGG 0.520558 5_1:+53087640 Msa0736560:CDS
AAGTACGCGCATGAGAATCA+TGG 0.523656 5_1:-53089348 None:intergenic
CTAAATAAGTAGTAAAAGGC+AGG 0.525859 5_1:-53090356 None:intergenic
CCTTCTATTACATGATTGAA+GGG 0.526700 5_1:+53090274 Msa0736560:CDS
TTCTGAGCTATTCACACTTG+AGG 0.535196 5_1:-53091838 None:intergenic
TCACCTTTATTGGTATTGGG+TGG 0.535989 5_1:+53090834 Msa0736560:CDS
TTGTTGTGAATCCAGGTTCG+AGG 0.537660 5_1:-53090382 None:intergenic
AATAACCACAATTGTTCCAA+AGG 0.538698 5_1:-53090787 None:intergenic
AACTAACCTGGTGAACAAAA+GGG 0.541607 5_1:-53088676 None:intergenic
AAGGTGCTTGAAACTCTGAT+TGG 0.544875 5_1:-53090875 None:intergenic
ATAGCTCAGAAGAAGCTCAC+TGG 0.546157 5_1:+53091850 Msa0736560:exon
TCTAACCTGGGATTATGAAA+GGG 0.548279 5_1:-53087645 None:intergenic
TACATATTTGCCAGTGTGTG+GGG 0.552002 5_1:+53091014 Msa0736560:CDS
TCAATGAAAATGGCACTGAA+TGG 0.553149 5_1:-53090984 None:intergenic
CTTGATGACCAAGAAGAGAC+TGG 0.553949 5_1:+53089647 Msa0736560:CDS
AAAGATGCTGACAAGAAAAG+AGG 0.554105 5_1:+53088914 Msa0736560:CDS
ATACTTTCAACTTGCTGCTG+AGG 0.554818 5_1:+53091124 Msa0736560:CDS
CTGAGGATCATGAATGGTGG+TGG 0.559393 5_1:+53091141 Msa0736560:CDS
ACAGAGTAAAACAAAGCGCC+TGG 0.561428 5_1:-53091879 None:intergenic
TCCAAAGGGTAGTGCTGCAG+TGG 0.561479 5_1:-53090772 None:intergenic
ACTACCCTTTGGAACAATTG+TGG 0.569004 5_1:+53090782 Msa0736560:CDS
ACTTGAGGGAACGGTATATG+TGG 0.569759 5_1:-53091823 None:intergenic
TATGATGACTTGCCAATTTG+GGG 0.574034 5_1:+53088987 Msa0736560:CDS
AAATGATCCGAATGCTGTTG+TGG 0.575333 5_1:+53089136 Msa0736560:CDS
ATAACCACAATTGTTCCAAA+GGG 0.579246 5_1:-53090786 None:intergenic
GGATACTTGTTGGTTCGACA+AGG 0.582998 5_1:-53090894 None:intergenic
ATGACCAAGAAGAGACTGGA+TGG 0.583101 5_1:+53089651 Msa0736560:CDS
AGTAAAAGGCAGGTATTGAG+TGG 0.586494 5_1:-53090346 None:intergenic
AAAAGATGTTGACACAAATG+AGG 0.586558 5_1:+53089037 Msa0736560:CDS
AGTTAATAATAGAAAACCAA+TGG 0.587731 5_1:-53089289 None:intergenic
GACATTCAGCTTTCTTAACA+CGG 0.594648 5_1:+53090731 Msa0736560:CDS
GGGAGATTCCTAAACTACCT+TGG 0.601031 5_1:+53090919 Msa0736560:CDS
TTGCTGCTGAGGATCATGAA+TGG 0.608218 5_1:+53091135 Msa0736560:CDS
CAGACATATCTGATCTTGCA+TGG 0.613786 5_1:-53091694 None:intergenic
GCTATTCACACTTGAGGGAA+CGG 0.614276 5_1:-53091832 None:intergenic
CGCGCATGAGAATCATGGCA+AGG 0.619445 5_1:-53089343 None:intergenic
CTGCTGAGGATCATGAATGG+TGG 0.620026 5_1:+53091138 Msa0736560:CDS
ACTGGATGGAAGTATATCCA+TGG 0.622758 5_1:+53089665 Msa0736560:CDS
GTCGAACCAACAAGTATCCG+AGG 0.624487 5_1:+53090898 Msa0736560:CDS
AATCTGATGACCCCACACAC+TGG 0.627045 5_1:-53091024 None:intergenic
AGGATCATGAATGGTGGTGG+AGG 0.635786 5_1:+53091144 Msa0736560:CDS
GGACTTGACAGAAGATAGAG+AGG 0.642544 5_1:+53089157 Msa0736560:CDS
TTATACAGCAGAAACAACAT+AGG 0.656465 5_1:-53087545 None:intergenic
GATATCTAAACACATCACCA+TGG 0.657708 5_1:-53089682 None:intergenic
GAAGCTCACTGGAATAAACC+AGG 0.661450 5_1:+53091861 Msa0736560:three_prime_UTR
TCTTAGACAGCATAAACAGT+CGG 0.662427 5_1:+53090319 Msa0736560:CDS
GGTAGTTTAGGAATCTCCCT+CGG 0.664868 5_1:-53090915 None:intergenic
ACCCAATACCAATAAAGGTG+AGG 0.665590 5_1:-53090832 None:intergenic
TTCCAAATGATGTGAGAGTG+AGG 0.670818 5_1:-53089264 None:intergenic
TCGAACCAACAAGTATCCGA+GGG 0.672144 5_1:+53090899 Msa0736560:CDS
ACCCAGTTGATCCACCACAA+AGG 0.682810 5_1:-53091640 None:intergenic
AGTGCCTGTTCCAAGTGCTG+CGG 0.689872 5_1:-53089726 None:intergenic
GAAACAACATAGGATCACAA+TGG 0.705943 5_1:-53087535 None:intergenic
AATGATTTATGCAGTCACTG+CGG 0.784638 5_1:+53090407 Msa0736560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATCAAAATATATTTTAAAA+GGG - chr5_1:53087698-53087717 None:intergenic 10.0%
!!! AGATCAAAATATATTTTAAA+AGG - chr5_1:53087699-53087718 None:intergenic 10.0%
!!! TTTTTTTCAAAAGTATAAAT+TGG - chr5_1:53087732-53087751 None:intergenic 10.0%
!! TGAAAAAAATATGAAAAAAT+TGG + chr5_1:53087743-53087762 Msa0736560:intron 10.0%
!! GAAAAAAATATGAAAAAATT+GGG + chr5_1:53087744-53087763 Msa0736560:intron 10.0%
!!! ATTAAATAGTATAATTTTTG+TGG + chr5_1:53088340-53088359 Msa0736560:intron 10.0%
!! AAATAAAAATAAAAGTTGTT+AGG - chr5_1:53092035-53092054 None:intergenic 10.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr5_1:53089840-53089859 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr5_1:53089943-53089962 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr5_1:53089967-53089986 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr5_1:53089966-53089985 Msa0736560:intron 15.0%
!! TGAAAAAAATATCAATGTTA+TGG + chr5_1:53091231-53091250 Msa0736560:intron 15.0%
!! GAAAAAAATATCAATGTTAT+GGG + chr5_1:53091232-53091251 Msa0736560:intron 15.0%
!! AAATGACAAGTTATAAAATA+TGG - chr5_1:53091598-53091617 None:intergenic 15.0%
!!! TTTATTTGAAATTATAGAAG+AGG + chr5_1:53092048-53092067 Msa0736560:three_prime_UTR 15.0%
!!! TTTTCAAAAGTATAAATTGG+AGG - chr5_1:53087729-53087748 None:intergenic 20.0%
!!! AGACAGTAATAGAAAATTTT+GGG - chr5_1:53088727-53088746 None:intergenic 20.0%
!!! AAGACAGTAATAGAAAATTT+TGG - chr5_1:53088728-53088747 None:intergenic 20.0%
!!! CAATAAATTTTGGAACTATA+AGG - chr5_1:53088772-53088791 None:intergenic 20.0%
!!! TTTCTGCATTCAATAAATTT+TGG - chr5_1:53088782-53088801 None:intergenic 20.0%
!! AGTTAATAATAGAAAACCAA+TGG - chr5_1:53089292-53089311 None:intergenic 20.0%
!! ATTTATTTATCTCAGTAGTA+TGG + chr5_1:53089402-53089421 Msa0736560:intron 20.0%
!! ACATAACAAAATATTACGAT+AGG + chr5_1:53089603-53089622 Msa0736560:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr5_1:53089880-53089899 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr5_1:53089957-53089976 Msa0736560:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr5_1:53090000-53090019 None:intergenic 20.0%
!!! TTGTGGTTATTTTCTTAATA+TGG + chr5_1:53090799-53090818 Msa0736560:CDS 20.0%
!! TAGTTTATTCATCAGAATTT+AGG + chr5_1:53091205-53091224 Msa0736560:intron 20.0%
!! TTGAAAACTATTATTAGATC+AGG - chr5_1:53091309-53091328 None:intergenic 20.0%
!!! GTCATTTTCTTAAAAATATG+TGG - chr5_1:53091522-53091541 None:intergenic 20.0%
!!! TCATTTTTCTACATGATATT+AGG + chr5_1:53091612-53091631 Msa0736560:intron 20.0%
! AAGCATTAAAAATCTAACCT+GGG - chr5_1:53087660-53087679 None:intergenic 25.0%
!! AAAGCATTAAAAATCTAACC+TGG - chr5_1:53087661-53087680 None:intergenic 25.0%
!! GTAATGGAATGAAATCTTAA+TGG + chr5_1:53087801-53087820 Msa0736560:intron 25.0%
! TTAGTGCTTCAATAAAATCA+TGG + chr5_1:53087896-53087915 Msa0736560:intron 25.0%
! TTTATTGTCAAGATAAGCTA+TGG - chr5_1:53088188-53088207 None:intergenic 25.0%
! AATGAACACACTTCAATATA+GGG - chr5_1:53088280-53088299 None:intergenic 25.0%
! AAATGAACACACTTCAATAT+AGG - chr5_1:53088281-53088300 None:intergenic 25.0%
! TCAGTTAAAGATGAATTGTT+CGG - chr5_1:53088469-53088488 None:intergenic 25.0%
! ATCAAGAATTTCTTCCTAAA+TGG + chr5_1:53088581-53088600 Msa0736560:intron 25.0%
! TATTAACAAAGTAGCCATTT+AGG - chr5_1:53088598-53088617 None:intergenic 25.0%
! TTTATTGAATGCAGAAAATG+TGG + chr5_1:53088785-53088804 Msa0736560:intron 25.0%
!! ATCAAGAATTCAAGTTTGTA+AGG - chr5_1:53088867-53088886 None:intergenic 25.0%
! ATTCCTAAAAAGATAAACTG+TGG - chr5_1:53089063-53089082 None:intergenic 25.0%
! ATTTCACATATTCTGTCAAA+TGG + chr5_1:53089189-53089208 Msa0736560:CDS 25.0%
!!! TTCAAAATGAGTGTTGTTTT+AGG - chr5_1:53090048-53090067 None:intergenic 25.0%
!!! AAACAACACTCATTTTGAAA+CGG + chr5_1:53090049-53090068 Msa0736560:intron 25.0%
! GAACCTAAATAAGTAGTAAA+AGG - chr5_1:53090363-53090382 None:intergenic 25.0%
! AAAAACAACTGGAAAAAGAA+AGG - chr5_1:53090578-53090597 None:intergenic 25.0%
! ATTACTTTCAATCGTGTTAA+AGG - chr5_1:53090601-53090620 None:intergenic 25.0%
! AATGAACAAAATGCTGTATA+TGG - chr5_1:53091054-53091073 None:intergenic 25.0%
!! TCTAAAAAGTAGAGGTATAA+GGG + chr5_1:53091459-53091478 Msa0736560:intron 25.0%
!! ATGCAAACTTCTTTCTTTTT+CGG + chr5_1:53091722-53091741 Msa0736560:CDS 25.0%
! ATTAAGCAGTGATAGAAATT+TGG - chr5_1:53091977-53091996 None:intergenic 25.0%
TTATACAGCAGAAACAACAT+AGG - chr5_1:53087548-53087567 None:intergenic 30.0%
TCAGATCATCGTTATAAAGA+AGG + chr5_1:53087588-53087607 Msa0736560:CDS 30.0%
TTCATTCCATTACAGAATTC+TGG - chr5_1:53087794-53087813 None:intergenic 30.0%
ATGGAATGAAATCTTAATGG+TGG + chr5_1:53087804-53087823 Msa0736560:intron 30.0%
CAAATTACGACAGGTAAATT+TGG - chr5_1:53087938-53087957 None:intergenic 30.0%
CAAATTTACCTGTCGTAATT+TGG + chr5_1:53087936-53087955 Msa0736560:intron 30.0%
!! TTGACAATAAAGTATTGCTC+TGG + chr5_1:53088197-53088216 Msa0736560:intron 30.0%
!! CTTTTATCTTTGCCATTTGA+TGG + chr5_1:53088235-53088254 Msa0736560:intron 30.0%
CAGTTAAAGATGAATTGTTC+GGG - chr5_1:53088468-53088487 None:intergenic 30.0%
! CTTGGTTGGTTAAATCTAAA+TGG + chr5_1:53088516-53088535 Msa0736560:intron 30.0%
GAAGAAAAGAAAGAAGATCT+TGG + chr5_1:53088807-53088826 Msa0736560:CDS 30.0%
AAAAGATGTTGACACAAATG+AGG + chr5_1:53089037-53089056 Msa0736560:CDS 30.0%
CAGATATTCCATTTGAGAAA+AGG + chr5_1:53089219-53089238 Msa0736560:CDS 30.0%
TATTCCATTTGAGAAAAGGT+TGG + chr5_1:53089223-53089242 Msa0736560:CDS 30.0%
ATGAAAATAGCTCGAAATTG+TGG - chr5_1:53089542-53089561 None:intergenic 30.0%
! TTAGACCATTTACTAGTTTG+TGG + chr5_1:53089566-53089585 Msa0736560:intron 30.0%
AAGTTCCACAAACTAGTAAA+TGG - chr5_1:53089574-53089593 None:intergenic 30.0%
! TTACCTTCTCAAAGTACTAA+TGG + chr5_1:53089772-53089791 Msa0736560:intron 30.0%
! ATACCATTAGTACTTTGAGA+AGG - chr5_1:53089778-53089797 None:intergenic 30.0%
! CTCTTTTGTGACTATATACT+TGG + chr5_1:53090112-53090131 Msa0736560:intron 30.0%
ATATTTATGCTTGCTCTAGT+TGG + chr5_1:53090159-53090178 Msa0736560:CDS 30.0%
! TGTTTTCTATCCATACAACA+GGG + chr5_1:53090182-53090201 Msa0736560:CDS 30.0%
TCCTTCTATTACATGATTGA+AGG + chr5_1:53090273-53090292 Msa0736560:CDS 30.0%
CCTTCTATTACATGATTGAA+GGG + chr5_1:53090274-53090293 Msa0736560:CDS 30.0%
ACATGATTGAAGGGAAAAAT+TGG + chr5_1:53090283-53090302 Msa0736560:CDS 30.0%
CATGATTGAAGGGAAAAATT+GGG + chr5_1:53090284-53090303 Msa0736560:CDS 30.0%
CTAAATAAGTAGTAAAAGGC+AGG - chr5_1:53090359-53090378 None:intergenic 30.0%
! CTGCCTTTTACTACTTATTT+AGG + chr5_1:53090357-53090376 Msa0736560:CDS 30.0%
CTAAGTCATTGGATAAAGAT+CGG + chr5_1:53090439-53090458 Msa0736560:intron 30.0%
GGATTACACTTATCAAGTAT+TGG + chr5_1:53090643-53090662 Msa0736560:intron 30.0%
!! TGCATTTCAGGTGAAAATTT+TGG + chr5_1:53090671-53090690 Msa0736560:intron 30.0%
!!! GTGAAAATTTTGGTGTTAAC+TGG + chr5_1:53090681-53090700 Msa0736560:CDS 30.0%
AAGCTGAATGTCAAAAACAA+TGG - chr5_1:53090723-53090742 None:intergenic 30.0%
ATAACCACAATTGTTCCAAA+GGG - chr5_1:53090789-53090808 None:intergenic 30.0%
AATAACCACAATTGTTCCAA+AGG - chr5_1:53090790-53090809 None:intergenic 30.0%
GTAGTAGAGTTCAATGAAAA+TGG - chr5_1:53090997-53091016 None:intergenic 30.0%
AAAACTATTTATGCATGCCA+AGG - chr5_1:53091285-53091304 None:intergenic 30.0%
GAGAGATTAGATGAATTAAG+AGG - chr5_1:53091411-53091430 None:intergenic 30.0%
TCATCTAATCTCTCAATTGT+TGG + chr5_1:53091417-53091436 Msa0736560:intron 30.0%
CAATTGTTGGATGAATTTAG+TGG + chr5_1:53091430-53091449 Msa0736560:intron 30.0%
!!! CTTATACCTCTACTTTTTAG+AGG - chr5_1:53091460-53091479 None:intergenic 30.0%
! CTCTAAAAAGTAGAGGTATA+AGG + chr5_1:53091458-53091477 Msa0736560:intron 30.0%
! CTAAAAAGTAGAGGTATAAG+GGG + chr5_1:53091460-53091479 Msa0736560:intron 30.0%
TATGGTTTCTTTCTTATGCT+TGG + chr5_1:53091764-53091783 Msa0736560:CDS 30.0%
GAAACAACATAGGATCACAA+TGG - chr5_1:53087538-53087557 None:intergenic 35.0%
! TGTACCGTTTTATGCAAACA+AGG + chr5_1:53087617-53087636 Msa0736560:CDS 35.0%
TCTAACCTGGGATTATGAAA+GGG - chr5_1:53087648-53087667 None:intergenic 35.0%
ATCTAACCTGGGATTATGAA+AGG - chr5_1:53087649-53087668 None:intergenic 35.0%
!!! AATTGGGTTGTGTCATTTTG+AGG + chr5_1:53087760-53087779 Msa0736560:intron 35.0%
ACCATTCCAGAATTCTGTAA+TGG + chr5_1:53087785-53087804 Msa0736560:intron 35.0%
! TCCATTACAGAATTCTGGAA+TGG - chr5_1:53087789-53087808 None:intergenic 35.0%
!! AATCTTAATGGTGGATGAAG+AGG + chr5_1:53087813-53087832 Msa0736560:intron 35.0%
ACACATAACCAAATTACGAC+AGG - chr5_1:53087947-53087966 None:intergenic 35.0%
! TATCTTTGCCATTTGATGGT+AGG + chr5_1:53088239-53088258 Msa0736560:intron 35.0%
! ATCTTCACCCGAACAATTTT+TGG - chr5_1:53088430-53088449 None:intergenic 35.0%
AGCACTTGAGTTTAATCACT+TGG + chr5_1:53088498-53088517 Msa0736560:intron 35.0%
CTTGAGTTTAATCACTTGGT+TGG + chr5_1:53088502-53088521 Msa0736560:intron 35.0%
TGTGGCAGAAAAAAATGTCA+AGG - chr5_1:53088630-53088649 None:intergenic 35.0%
AATATCTGTATGTCTCACTG+TGG - chr5_1:53088648-53088667 None:intergenic 35.0%
AACTAACCTGGTGAACAAAA+GGG - chr5_1:53088679-53088698 None:intergenic 35.0%
AAACTAACCTGGTGAACAAA+AGG - chr5_1:53088680-53088699 None:intergenic 35.0%
TGAATACCATCAAACTAACC+TGG - chr5_1:53088691-53088710 None:intergenic 35.0%
!!! GATCTTGGTGAAGTTTTGAA+TGG + chr5_1:53088822-53088841 Msa0736560:CDS 35.0%
! CTTTTCTTGTCAGCATCTTT+TGG - chr5_1:53088914-53088933 None:intergenic 35.0%
AAAGATGCTGACAAGAAAAG+AGG + chr5_1:53088914-53088933 Msa0736560:CDS 35.0%
!!! ATTCAGACATGCTGTTTTGA+AGG + chr5_1:53088944-53088963 Msa0736560:CDS 35.0%
! ACTATGATGACTTGCCAATT+TGG + chr5_1:53088985-53089004 Msa0736560:CDS 35.0%
! CTATGATGACTTGCCAATTT+GGG + chr5_1:53088986-53089005 Msa0736560:CDS 35.0%
! TATGATGACTTGCCAATTTG+GGG + chr5_1:53088987-53089006 Msa0736560:CDS 35.0%
CATCAGTTTCAAATCTTCCA+AGG - chr5_1:53089016-53089035 None:intergenic 35.0%
! AGGCCACAGTTTATCTTTTT+AGG + chr5_1:53089057-53089076 Msa0736560:CDS 35.0%
AGAAGATAGAGAGGTAAATG+TGG + chr5_1:53089166-53089185 Msa0736560:CDS 35.0%
! TTCTCCAACCTTTTCTCAAA+TGG - chr5_1:53089230-53089249 None:intergenic 35.0%
CACATCATTTGGAAATCCAT+TGG + chr5_1:53089273-53089292 Msa0736560:CDS 35.0%
AAATAGCTCGAAATTGTGGT+AGG - chr5_1:53089538-53089557 None:intergenic 35.0%
GATATCTAAACACATCACCA+TGG - chr5_1:53089685-53089704 None:intergenic 35.0%
GCGAACAAAGACTTAAATCT+TGG - chr5_1:53089707-53089726 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr5_1:53089814-53089833 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr5_1:53089914-53089933 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr5_1:53089918-53089937 None:intergenic 35.0%
!!! AACACTCATTTTGAAACGGA+GGG + chr5_1:53090053-53090072 Msa0736560:intron 35.0%
AAACGGAGGGAGTAATATAA+AGG + chr5_1:53090066-53090085 Msa0736560:intron 35.0%
! GTGTTTTCTATCCATACAAC+AGG + chr5_1:53090181-53090200 Msa0736560:CDS 35.0%
! GTTTTCTATCCATACAACAG+GGG + chr5_1:53090183-53090202 Msa0736560:CDS 35.0%
CCCTTCAATCATGTAATAGA+AGG - chr5_1:53090277-53090296 None:intergenic 35.0%
! GTTTATGCTGTCTAAGATGA+TGG - chr5_1:53090316-53090335 None:intergenic 35.0%
TCTTAGACAGCATAAACAGT+CGG + chr5_1:53090319-53090338 Msa0736560:CDS 35.0%
! TCATTGATTGTTGTGAATCC+AGG - chr5_1:53090392-53090411 None:intergenic 35.0%
AATGATTTATGCAGTCACTG+CGG + chr5_1:53090407-53090426 Msa0736560:CDS 35.0%
CAACTGGAAAAAGAAAGGAA+AGG - chr5_1:53090573-53090592 None:intergenic 35.0%
CGTGTTAAAGGAAAAACAAC+TGG - chr5_1:53090589-53090608 None:intergenic 35.0%
! GTATTGGTATGTTGCATTTC+AGG + chr5_1:53090659-53090678 Msa0736560:intron 35.0%
TTAACTGGTAGTCTATTCTC+TGG + chr5_1:53090696-53090715 Msa0736560:CDS 35.0%
GACATTCAGCTTTCTTAACA+CGG + chr5_1:53090731-53090750 Msa0736560:CDS 35.0%
ACTTGTAACCTCACCTTTAT+TGG + chr5_1:53090824-53090843 Msa0736560:CDS 35.0%
AACCTCACCTTTATTGGTAT+TGG + chr5_1:53090830-53090849 Msa0736560:CDS 35.0%
ACCTCACCTTTATTGGTATT+GGG + chr5_1:53090831-53090850 Msa0736560:CDS 35.0%
! CCATTTGAGGAAGAGTTTTA+CGG - chr5_1:53090947-53090966 None:intergenic 35.0%
! TCAATGAAAATGGCACTGAA+TGG - chr5_1:53090987-53091006 None:intergenic 35.0%
!! CTTTTGATTGTCACTGCTTT+TGG + chr5_1:53091086-53091105 Msa0736560:CDS 35.0%
!!! TACCTCTACTTTTTAGAGGT+CGG - chr5_1:53091456-53091475 None:intergenic 35.0%
GATATTAGGTCTTTCCTTTG+TGG + chr5_1:53091626-53091645 Msa0736560:intron 35.0%
TCAACTGGGTTGTTCATATA+TGG + chr5_1:53091653-53091672 Msa0736560:CDS 35.0%
!!! TTCTTTCTTTTTCGGCTACA+TGG + chr5_1:53091730-53091749 Msa0736560:CDS 35.0%
TTTCTTATGCTTGGAACTGT+GGG + chr5_1:53091773-53091792 Msa0736560:CDS 35.0%
!! GCAATGAGATTTTGCTGTAT+TGG - chr5_1:53091910-53091929 None:intergenic 35.0%
CAGCAAAATCTCATTGCAAA+TGG + chr5_1:53091913-53091932 Msa0736560:three_prime_UTR 35.0%
GGTTTACTGAAGAGTAGTAT+AGG + chr5_1:53091934-53091953 Msa0736560:three_prime_UTR 35.0%
GGAAAAGTCAACGACATGTT+TGG + chr5_1:53087506-53087525 Msa0736560:CDS 40.0%
! ACCGTTTTATGCAAACAAGG+TGG + chr5_1:53087620-53087639 Msa0736560:CDS 40.0%
! CCCACCTTGTTTGCATAAAA+CGG - chr5_1:53087624-53087643 None:intergenic 40.0%
! CCGTTTTATGCAAACAAGGT+GGG + chr5_1:53087621-53087640 Msa0736560:CDS 40.0%
CTCATACAAAAAGTGACACG+TGG - chr5_1:53088155-53088174 None:intergenic 40.0%
TTGCTCTGGTGTATCTCATT+TGG + chr5_1:53088211-53088230 Msa0736560:intron 40.0%
!! TGAAAGTGCCTACCATCAAA+TGG - chr5_1:53088250-53088269 None:intergenic 40.0%
TGGCCAAACTCTAGATTATG+AGG - chr5_1:53088396-53088415 None:intergenic 40.0%
TAGAGTTTGGCCAAGAGATA+CGG + chr5_1:53088403-53088422 Msa0736560:intron 40.0%
!!! AATTTTTGGCCCGTATCTCT+TGG - chr5_1:53088416-53088435 None:intergenic 40.0%
GATACGGGCCAAAAATTGTT+CGG + chr5_1:53088419-53088438 Msa0736560:intron 40.0%
ATACGGGCCAAAAATTGTTC+GGG + chr5_1:53088420-53088439 Msa0736560:intron 40.0%
!! TGTTCACCAGGTTAGTTTGA+TGG + chr5_1:53088682-53088701 Msa0736560:intron 40.0%
! ATCTTTTGGCAAATGCTCTC+AGG - chr5_1:53088900-53088919 None:intergenic 40.0%
AAATGATCCGAATGCTGTTG+TGG + chr5_1:53089136-53089155 Msa0736560:CDS 40.0%
ATCCTCACTCTCACATCATT+TGG + chr5_1:53089262-53089281 Msa0736560:CDS 40.0%
TTCCAAATGATGTGAGAGTG+AGG - chr5_1:53089267-53089286 None:intergenic 40.0%
GTTACTGTTCTTCTCTTGAC+CGG + chr5_1:53089317-53089336 Msa0736560:CDS 40.0%
!! GAGCACATTTGATCGCTTTT+TGG - chr5_1:53089472-53089491 None:intergenic 40.0%
TCATCAAGTGCTTCTTCATC+TGG - chr5_1:53089635-53089654 None:intergenic 40.0%
! ACTGGATGGAAGTATATCCA+TGG + chr5_1:53089665-53089684 Msa0736560:CDS 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr5_1:53089915-53089934 None:intergenic 40.0%
!!! CAACACTCATTTTGAAACGG+AGG + chr5_1:53090052-53090071 Msa0736560:intron 40.0%
GTCATATACGCATTAACGTC+TGG + chr5_1:53090228-53090247 Msa0736560:CDS 40.0%
!! AGTAAAAGGCAGGTATTGAG+TGG - chr5_1:53090349-53090368 None:intergenic 40.0%
! TTATTTAGGTTCCTCGAACC+TGG + chr5_1:53090371-53090390 Msa0736560:CDS 40.0%
GGTCAGTTGATCTAAGTCAT+TGG + chr5_1:53090428-53090447 Msa0736560:intron 40.0%
CACGATTGAAAGTAATACCG+TGG + chr5_1:53090605-53090624 Msa0736560:intron 40.0%
!! ACTACCCTTTGGAACAATTG+TGG + chr5_1:53090782-53090801 Msa0736560:CDS 40.0%
ACCCAATACCAATAAAGGTG+AGG - chr5_1:53090835-53090854 None:intergenic 40.0%
! TCACCTTTATTGGTATTGGG+TGG + chr5_1:53090834-53090853 Msa0736560:CDS 40.0%
! CACCTTTATTGGTATTGGGT+GGG + chr5_1:53090835-53090854 Msa0736560:CDS 40.0%
ATCCCACCCAATACCAATAA+AGG - chr5_1:53090840-53090859 None:intergenic 40.0%
! AAGGTGCTTGAAACTCTGAT+TGG - chr5_1:53090878-53090897 None:intergenic 40.0%
TTACGGTACCAAGGTAGTTT+AGG - chr5_1:53090930-53090949 None:intergenic 40.0%
CCGTAAAACTCTTCCTCAAA+TGG + chr5_1:53090944-53090963 Msa0736560:CDS 40.0%
AACTCTTCCTCAAATGGCTA+TGG + chr5_1:53090950-53090969 Msa0736560:CDS 40.0%
ACTACATATTTGCCAGTGTG+TGG + chr5_1:53091012-53091031 Msa0736560:CDS 40.0%
CTACATATTTGCCAGTGTGT+GGG + chr5_1:53091013-53091032 Msa0736560:CDS 40.0%
TACATATTTGCCAGTGTGTG+GGG + chr5_1:53091014-53091033 Msa0736560:CDS 40.0%
!!! TGTCACTGCTTTTGGTAATG+TGG + chr5_1:53091094-53091113 Msa0736560:CDS 40.0%
!! ATACTTTCAACTTGCTGCTG+AGG + chr5_1:53091124-53091143 Msa0736560:CDS 40.0%
GGTGATTGTGTTTGAATGGA+AGG - chr5_1:53091264-53091283 None:intergenic 40.0%
CCAAGGTGATTGTGTTTGAA+TGG - chr5_1:53091268-53091287 None:intergenic 40.0%
CCATTCAAACACAATCACCT+TGG + chr5_1:53091265-53091284 Msa0736560:intron 40.0%
! CACGTGATGCTACAAACTTT+TGG + chr5_1:53091334-53091353 Msa0736560:intron 40.0%
! AAACTTTTGGCCATGCTAGA+TGG + chr5_1:53091347-53091366 Msa0736560:intron 40.0%
ATTAGGTCTTTCCTTTGTGG+TGG + chr5_1:53091629-53091648 Msa0736560:intron 40.0%
CAGACATATCTGATCTTGCA+TGG - chr5_1:53091697-53091716 None:intergenic 40.0%
CATGCAAGATCAGATATGTC+TGG + chr5_1:53091695-53091714 Msa0736560:CDS 40.0%
! TACATGGCTTGCATTTGCTA+TGG + chr5_1:53091746-53091765 Msa0736560:CDS 40.0%
CTTTCTTATGCTTGGAACTG+TGG + chr5_1:53091772-53091791 Msa0736560:CDS 40.0%
TCTGAGCTATTCACACTTGA+GGG - chr5_1:53091840-53091859 None:intergenic 40.0%
TTCTGAGCTATTCACACTTG+AGG - chr5_1:53091841-53091860 None:intergenic 40.0%
AGCATCACATTCATAGCTTC+AGG + chr5_1:53092075-53092094 Msa0736560:three_prime_UTR 40.0%
!! TGTAGCACTGACACTTCTGA+TGG + chr5_1:53088036-53088055 Msa0736560:intron 45.0%
! TATCAGTGTTGTGCTGGTGT+CGG - chr5_1:53088082-53088101 None:intergenic 45.0%
CACATGTATCAGTGTTGTGC+TGG - chr5_1:53088088-53088107 None:intergenic 45.0%
! GGGCCTCATAATCTAGAGTT+TGG + chr5_1:53088390-53088409 Msa0736560:intron 45.0%
AGAGTTTGGCCAAGAGATAC+GGG + chr5_1:53088404-53088423 Msa0736560:intron 45.0%
! GATCTTCCCTTTTGTTCACC+AGG + chr5_1:53088670-53088689 Msa0736560:CDS 45.0%
! TTGCCAATTTGGGGTTTCCT+TGG + chr5_1:53088996-53089015 Msa0736560:CDS 45.0%
CTTCCAAGGAAACCCCAAAT+TGG - chr5_1:53089002-53089021 None:intergenic 45.0%
GTCAAGTCCACAACAGCATT+CGG - chr5_1:53089146-53089165 None:intergenic 45.0%
GGACTTGACAGAAGATAGAG+AGG + chr5_1:53089157-53089176 Msa0736560:CDS 45.0%
GAGAATCATGGCAAGGAATC+CGG - chr5_1:53089339-53089358 None:intergenic 45.0%
AAGTACGCGCATGAGAATCA+TGG - chr5_1:53089351-53089370 None:intergenic 45.0%
GCGATCAAATGTGCTCAATG+TGG + chr5_1:53089476-53089495 Msa0736560:intron 45.0%
TGGTAGGAGCTGCAATGTAA+AGG - chr5_1:53089522-53089541 None:intergenic 45.0%
! CTTGATGACCAAGAAGAGAC+TGG + chr5_1:53089647-53089666 Msa0736560:CDS 45.0%
ATGACCAAGAAGAGACTGGA+TGG + chr5_1:53089651-53089670 Msa0736560:CDS 45.0%
ACTTCCATCCAGTCTCTTCT+TGG - chr5_1:53089658-53089677 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5_1:53089811-53089830 None:intergenic 45.0%
AACAAAGCTCCCCTGTTGTA+TGG - chr5_1:53090195-53090214 None:intergenic 45.0%
GAAGGAAGCTGCAGAATAAC+CGG - chr5_1:53090259-53090278 None:intergenic 45.0%
TTGTTGTGAATCCAGGTTCG+AGG - chr5_1:53090385-53090404 None:intergenic 45.0%
CCACTCAGTTTCTCTTTCCA+CGG - chr5_1:53090625-53090644 None:intergenic 45.0%
TAGTGCTGCAGTGGAGTTAT+AGG - chr5_1:53090766-53090785 None:intergenic 45.0%
!! GGATACTTGTTGGTTCGACA+AGG - chr5_1:53090897-53090916 None:intergenic 45.0%
TCGAACCAACAAGTATCCGA+GGG + chr5_1:53090899-53090918 Msa0736560:CDS 45.0%
AATCTCCCTCGGATACTTGT+TGG - chr5_1:53090907-53090926 None:intergenic 45.0%
GGTAGTTTAGGAATCTCCCT+CGG - chr5_1:53090918-53090937 None:intergenic 45.0%
GGGAGATTCCTAAACTACCT+TGG + chr5_1:53090919-53090938 Msa0736560:CDS 45.0%
! GGAAGAGTTTTACGGTACCA+AGG - chr5_1:53090939-53090958 None:intergenic 45.0%
AATCCAGCCATAGCCATTTG+AGG - chr5_1:53090960-53090979 None:intergenic 45.0%
TTGCTGCTGAGGATCATGAA+TGG + chr5_1:53091135-53091154 Msa0736560:CDS 45.0%
GAATTAAGAGGACCGACCTT+TGG - chr5_1:53091399-53091418 None:intergenic 45.0%
!! TTCCTTTGTGGTGGATCAAC+TGG + chr5_1:53091638-53091657 Msa0736560:CDS 45.0%
!! TCCTTTGTGGTGGATCAACT+GGG + chr5_1:53091639-53091658 Msa0736560:CDS 45.0%
ACTTGAGGGAACGGTATATG+TGG - chr5_1:53091826-53091845 None:intergenic 45.0%
GCTATTCACACTTGAGGGAA+CGG - chr5_1:53091835-53091854 None:intergenic 45.0%
ATAGCTCAGAAGAAGCTCAC+TGG + chr5_1:53091850-53091869 Msa0736560:exon 45.0%
GAAGCTCACTGGAATAAACC+AGG + chr5_1:53091861-53091880 Msa0736560:three_prime_UTR 45.0%
! ACAGAGTAAAACAAAGCGCC+TGG - chr5_1:53091882-53091901 None:intergenic 45.0%
TGGGACCCTTTCATAATCCC+AGG + chr5_1:53087640-53087659 Msa0736560:CDS 50.0%
CCATTCCTCCGGAAATTGGA+GGG - chr5_1:53088372-53088391 None:intergenic 50.0%
CCTCCAATTTCCGGAGGAAT+GGG + chr5_1:53088370-53088389 Msa0736560:intron 50.0%
GATTATGAGGCCCATTCCTC+CGG - chr5_1:53088383-53088402 None:intergenic 50.0%
TCGGGTGAAGATTTGACCTC+AGG + chr5_1:53088438-53088457 Msa0736560:intron 50.0%
GAATTGTTCGGGAGAACCTG+AGG - chr5_1:53088457-53088476 None:intergenic 50.0%
!! GGGAGCTTTGTTTACTGCAC+TGG + chr5_1:53090203-53090222 Msa0736560:CDS 50.0%
GCATTAACGTCTGGCATTGC+CGG + chr5_1:53090237-53090256 Msa0736560:CDS 50.0%
CCGTGGAAAGAGAAACTGAG+TGG + chr5_1:53090622-53090641 Msa0736560:intron 50.0%
! TTGGTATTGGGTGGGATTGC+TGG + chr5_1:53090843-53090862 Msa0736560:CDS 50.0%
GTCGAACCAACAAGTATCCG+AGG + chr5_1:53090898-53090917 Msa0736560:CDS 50.0%
CTTCCTCAAATGGCTATGGC+TGG + chr5_1:53090954-53090973 Msa0736560:CDS 50.0%
AATCTGATGACCCCACACAC+TGG - chr5_1:53091027-53091046 None:intergenic 50.0%
CTGCTGAGGATCATGAATGG+TGG + chr5_1:53091138-53091157 Msa0736560:CDS 50.0%
CTGAGGATCATGAATGGTGG+TGG + chr5_1:53091141-53091160 Msa0736560:CDS 50.0%
!! AGGATCATGAATGGTGGTGG+AGG + chr5_1:53091144-53091163 Msa0736560:CDS 50.0%
GGATCGAGATCCATCTAGCA+TGG - chr5_1:53091360-53091379 None:intergenic 50.0%
! GGCCGACCTCTAAAAAGTAG+AGG + chr5_1:53091451-53091470 Msa0736560:intron 50.0%
ATAAGTTCGCGCTCGACTCA+AGG + chr5_1:53091485-53091504 Msa0736560:intron 50.0%
ACCCAGTTGATCCACCACAA+AGG - chr5_1:53091643-53091662 None:intergenic 50.0%
! GTTGTGCTGGTGTCGGACAT+CGG - chr5_1:53088075-53088094 None:intergenic 55.0%
GGCCTGAACCCTCCAATTTC+CGG + chr5_1:53088361-53088380 Msa0736560:intron 55.0%
CTCCGGAAATTGGAGGGTTC+AGG - chr5_1:53088366-53088385 None:intergenic 55.0%
CTGAACCCTCCAATTTCCGG+AGG + chr5_1:53088364-53088383 Msa0736560:intron 55.0%
CCCTCCAATTTCCGGAGGAA+TGG + chr5_1:53088369-53088388 Msa0736560:intron 55.0%
CCCATTCCTCCGGAAATTGG+AGG - chr5_1:53088373-53088392 None:intergenic 55.0%
AGGCCCATTCCTCCGGAAAT+TGG - chr5_1:53088376-53088395 None:intergenic 55.0%
CGCGCATGAGAATCATGGCA+AGG - chr5_1:53089346-53089365 None:intergenic 55.0%
TCTTTGTTCGCCGCAGCACT+TGG + chr5_1:53089716-53089735 Msa0736560:CDS 55.0%
! AGTGCCTGTTCCAAGTGCTG+CGG - chr5_1:53089729-53089748 None:intergenic 55.0%
TCCACTGCAGCACTACCCTT+TGG + chr5_1:53090771-53090790 Msa0736560:CDS 55.0%
TCCAAAGGGTAGTGCTGCAG+TGG - chr5_1:53090775-53090794 None:intergenic 55.0%
TTTGGCTGCAGATGCGGAAG+AGG - chr5_1:53091381-53091400 None:intergenic 55.0%
TCTTCCGCATCTGCAGCCAA+AGG + chr5_1:53091380-53091399 Msa0736560:intron 55.0%
! CTGGTGTCGGACATCGGACT+CGG - chr5_1:53088069-53088088 None:intergenic 60.0%
TTCGCCGCAGCACTTGGAAC+AGG + chr5_1:53089722-53089741 Msa0736560:CDS 60.0%
CCGACCTTTGGCTGCAGATG+CGG - chr5_1:53091387-53091406 None:intergenic 60.0%
CCGCATCTGCAGCCAAAGGT+CGG + chr5_1:53091384-53091403 Msa0736560:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 53087493 53092128 53087493 ID=Msa0736560;Name=Msa0736560
chr5_1 mRNA 53087493 53092128 53087493 ID=Msa0736560-mRNA-1;Parent=Msa0736560;Name=Msa0736560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=11|0.83|0.85|1|1|1|7|275|636
chr5_1 exon 53087493 53087661 53087493 ID=Msa0736560-mRNA-1:exon:14936;Parent=Msa0736560-mRNA-1
chr5_1 exon 53088651 53088691 53088651 ID=Msa0736560-mRNA-1:exon:14937;Parent=Msa0736560-mRNA-1
chr5_1 exon 53088799 53089387 53088799 ID=Msa0736560-mRNA-1:exon:14938;Parent=Msa0736560-mRNA-1
chr5_1 exon 53089625 53089762 53089625 ID=Msa0736560-mRNA-1:exon:14939;Parent=Msa0736560-mRNA-1
chr5_1 exon 53090149 53090428 53090149 ID=Msa0736560-mRNA-1:exon:14940;Parent=Msa0736560-mRNA-1
chr5_1 exon 53090681 53091165 53090681 ID=Msa0736560-mRNA-1:exon:14941;Parent=Msa0736560-mRNA-1
chr5_1 exon 53091634 53092128 53091634 ID=Msa0736560-mRNA-1:exon:14942;Parent=Msa0736560-mRNA-1
chr5_1 five_prime_UTR 53087493 53087503 53087493 ID=Msa0736560-mRNA-1:five_prime_utr;Parent=Msa0736560-mRNA-1
chr5_1 CDS 53087504 53087661 53087504 ID=Msa0736560-mRNA-1:cds;Parent=Msa0736560-mRNA-1
chr5_1 CDS 53088651 53088691 53088651 ID=Msa0736560-mRNA-1:cds;Parent=Msa0736560-mRNA-1
chr5_1 CDS 53088799 53089387 53088799 ID=Msa0736560-mRNA-1:cds;Parent=Msa0736560-mRNA-1
chr5_1 CDS 53089625 53089762 53089625 ID=Msa0736560-mRNA-1:cds;Parent=Msa0736560-mRNA-1
chr5_1 CDS 53090149 53090428 53090149 ID=Msa0736560-mRNA-1:cds;Parent=Msa0736560-mRNA-1
chr5_1 CDS 53090681 53091165 53090681 ID=Msa0736560-mRNA-1:cds;Parent=Msa0736560-mRNA-1
chr5_1 CDS 53091634 53091853 53091634 ID=Msa0736560-mRNA-1:cds;Parent=Msa0736560-mRNA-1
chr5_1 three_prime_UTR 53091854 53092128 53091854 ID=Msa0736560-mRNA-1:three_prime_utr;Parent=Msa0736560-mRNA-1
Gene Sequence

>Msa0736560

ATGGAAAAGTCAACGACATGTTTGGTTAGTGCCATTGTGATCCTATGTTGTTTCTGCTGTATAAACTATGTTACATCTGATGCATCAGATCATCGTTATAAAGAAGGTGATTTTGTACCGTTTTATGCAAACAAGGTGGGACCCTTTCATAATCCCAGTGAGACATACAGATATTTTGATCTTCCCTTTTGTTCACCAGAAAATGTGGAAGAAAAGAAAGAAGATCTTGGTGAAGTTTTGAATGGTGATAGACTAGTTGTTGCTCCTTACAAACTTGAATTCTTGATTGATAAAAAACCTGAGAGCATTTGCCAAAAGATGCTGACAAGAAAAGAGGTTGCTCAATTCAGACATGCTGTTTTGAAGGACTATTTCTATCAAATGTACTATGATGACTTGCCAATTTGGGGTTTCCTTGGAAGATTTGAAACTGATGAAAAAGATGTTGACACAAATGAGGCCACAGTTTATCTTTTTAGGAATGTTCATTTTGAGATTCTGTACAATAACGATCGTATTATCGATGTTTTTGTTAAAAATGATCCGAATGCTGTTGTGGACTTGACAGAAGATAGAGAGGTAAATGTGGATTTCACATATTCTGTCAAATGGATTGAAACAGATATTCCATTTGAGAAAAGGTTGGAGAAATACTCGCAGACATCCTCACTCTCACATCATTTGGAAATCCATTGGTTTTCTATTATTAACTCGTGTGTTACTGTTCTTCTCTTGACCGGATTCCTTGCCATGATTCTCATGCGCGTACTTAAGAACGACTTTGTCAAGTTTACACCAGATGAAGAAGCACTTGATGACCAAGAAGAGACTGGATGGAAGTATATCCATGGTGATGTGTTTAGATATCCAAGATTTAAGTCTTTGTTCGCCGCAGCACTTGGAACAGGCACTCAGTTATTTACACTTGTAATCTTCATATTTATGCTTGCTCTAGTTGGTGTTTTCTATCCATACAACAGGGGAGCTTTGTTTACTGCACTGGTTGTCATATACGCATTAACGTCTGGCATTGCCGGTTATTCTGCAGCTTCCTTCTATTACATGATTGAAGGGAAAAATTGGGTAAAATCCATCATCTTAGACAGCATAAACAGTCGGTGCTCCACTCAATACCTGCCTTTTACTACTTATTTAGGTTCCTCGAACCTGGATTCACAACAATCAATGATTTATGCAGTCACTGCGGTGAAAATTTTGGTGTTAACTGGTAGTCTATTCTCTGGACCATTGTTTTTGACATTCAGCTTTCTTAACACGGTTGCTGTCGCCTATAACTCCACTGCAGCACTACCCTTTGGAACAATTGTGGTTATTTTCTTAATATGGACACTTGTAACCTCACCTTTATTGGTATTGGGTGGGATTGCTGGTAAGAATAGCCAATCAGAGTTTCAAGCACCTTGTCGAACCAACAAGTATCCGAGGGAGATTCCTAAACTACCTTGGTACCGTAAAACTCTTCCTCAAATGGCTATGGCTGGATTTTTGCCATTCAGTGCCATTTTCATTGAACTCTACTACATATTTGCCAGTGTGTGGGGTCATCAGATTTATACCATATACAGCATTTTGTTCATTGTTTTCATCATTCTTTTGATTGTCACTGCTTTTGGTAATGTGGCATTGACATACTTTCAACTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTCTTTCCTTTGTGGTGGATCAACTGGGTTGTTCATATATGGTTACTGCATGTTTTTCTACCATGCAAGATCAGATATGTCTGGTTTCATGCAAACTTCTTTCTTTTTCGGCTACATGGCTTGCATTTGCTATGGTTTCTTTCTTATGCTTGGAACTGTGGGTTTCAGAGCTTCTTTAATCTTTGTCAGCCACATATACCGTTCCCTCAAGTGTGAATAG

Protein sequence

>Msa0736560

MEKSTTCLVSAIVILCCFCCINYVTSDASDHRYKEGDFVPFYANKVGPFHNPSETYRYFDLPFCSPENVEEKKEDLGEVLNGDRLVVAPYKLEFLIDKKPESICQKMLTRKEVAQFRHAVLKDYFYQMYYDDLPIWGFLGRFETDEKDVDTNEATVYLFRNVHFEILYNNDRIIDVFVKNDPNAVVDLTEDREVNVDFTYSVKWIETDIPFEKRLEKYSQTSSLSHHLEIHWFSIINSCVTVLLLTGFLAMILMRVLKNDFVKFTPDEEALDDQEETGWKYIHGDVFRYPRFKSLFAAALGTGTQLFTLVIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYSAASFYYMIEGKNWVKSIILDSINSRCSTQYLPFTTYLGSSNLDSQQSMIYAVTAVKILVLTGSLFSGPLFLTFSFLNTVAVAYNSTAALPFGTIVVIFLIWTLVTSPLLVLGGIAGKNSQSEFQAPCRTNKYPREIPKLPWYRKTLPQMAMAGFLPFSAIFIELYYIFASVWGHQIYTIYSILFIVFIILLIVTAFGNVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYGYCMFFYHARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLIFVSHIYRSLKCE*