Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783330 | sp|Q9MAU5|Y1049_ARATH | 58.696 | 460 | 188 | 2 | 30 | 489 | 27 | 484 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783330 | G7K7F5 | 96.559 | 494 | 17 | 0 | 1 | 494 | 1 | 494 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0783330 | 0.807313 | 5.372751e-50 | -8.615850e-47 |
| Msa0017510 | Msa0783330 | 0.803538 | 3.324078e-49 | -8.615850e-47 |
| Msa0048000 | Msa0783330 | 0.833849 | 4.211035e-56 | -8.615850e-47 |
| Msa0068680 | Msa0783330 | 0.800180 | 1.626345e-48 | -8.615850e-47 |
| Msa0112750 | Msa0783330 | 0.824402 | 8.230824e-54 | -8.615850e-47 |
| Msa0608620 | Msa0783330 | 0.809928 | 1.484737e-50 | -8.615850e-47 |
| Msa0626280 | Msa0783330 | 0.804868 | 1.756818e-49 | -8.615850e-47 |
| Msa0637900 | Msa0783330 | 0.800325 | 1.519722e-48 | -8.615850e-47 |
| Msa0657610 | Msa0783330 | 0.806045 | 9.953912e-50 | -8.615850e-47 |
| Msa0657970 | Msa0783330 | 0.829163 | 6.003458e-55 | -8.615850e-47 |
| Msa0662570 | Msa0783330 | 0.802572 | 5.265424e-49 | -8.615850e-47 |
| Msa0682550 | Msa0783330 | 0.805635 | 1.213428e-49 | -8.615850e-47 |
| Msa0693380 | Msa0783330 | 0.851316 | 9.609538e-61 | -8.615850e-47 |
| Msa0715470 | Msa0783330 | 0.824150 | 9.430794e-54 | -8.615850e-47 |
| Msa0723990 | Msa0783330 | 0.813197 | 2.891816e-51 | -8.615850e-47 |
| Msa0738940 | Msa0783330 | 0.824181 | 9.277078e-54 | -8.615850e-47 |
| Msa0756540 | Msa0783330 | 0.834506 | 2.881194e-56 | -8.615850e-47 |
| Msa0766630 | Msa0783330 | 0.810388 | 1.181584e-50 | -8.615850e-47 |
| Msa0779330 | Msa0783330 | 0.800114 | 1.677403e-48 | -8.615850e-47 |
| Msa0783330 | Msa0824660 | 0.807593 | 4.684917e-50 | -8.615850e-47 |
| Msa0783330 | Msa0829620 | 0.813929 | 1.995237e-51 | -8.615850e-47 |
| Msa0783330 | Msa0863930 | 0.805415 | 1.349776e-49 | -8.615850e-47 |
| Msa0783330 | Msa0867890 | 0.819427 | 1.167993e-52 | -8.615850e-47 |
| Msa0783330 | Msa0870530 | 0.819981 | 8.727659e-53 | -8.615850e-47 |
| Msa0783330 | Msa0880140 | 0.800555 | 1.364260e-48 | -8.615850e-47 |
| Msa0783330 | Msa0903700 | 0.823108 | 1.653786e-53 | -8.615850e-47 |
| Msa0783330 | Msa0909120 | 0.801870 | 7.343539e-49 | -8.615850e-47 |
| Msa0783330 | Msa0954920 | 0.800065 | 1.716443e-48 | -8.615850e-47 |
| Msa0783330 | Msa0973150 | 0.820552 | 6.457492e-53 | -8.615850e-47 |
| Msa0783330 | Msa0975220 | 0.804490 | 2.107006e-49 | -8.615850e-47 |
| Msa0783330 | Msa1080160 | 0.828484 | 8.762156e-55 | -8.615850e-47 |
| Msa0783330 | Msa1082500 | 0.859266 | 4.657123e-63 | -8.615850e-47 |
| Msa0783330 | Msa1085200 | 0.818455 | 1.943247e-52 | -8.615850e-47 |
| Msa0783330 | Msa1098400 | 0.821312 | 4.316731e-53 | -8.615850e-47 |
| Msa0783330 | Msa1098420 | 0.806490 | 8.019132e-50 | -8.615850e-47 |
| Msa0783330 | Msa1179120 | 0.806354 | 8.568363e-50 | -8.615850e-47 |
| Msa0783330 | Msa1185980 | 0.802088 | 6.622144e-49 | -8.615850e-47 |
| Msa0783330 | Msa1250290 | 0.807003 | 6.248674e-50 | -8.615850e-47 |
| Msa0783330 | Msa1283860 | 0.809981 | 1.446455e-50 | -8.615850e-47 |
| Msa0783330 | Msa1299070 | 0.804347 | 2.256490e-49 | -8.615850e-47 |
| Msa0783330 | Msa1306850 | 0.802374 | 5.782211e-49 | -8.615850e-47 |
| Msa0783330 | Msa1313150 | 0.811809 | 5.812782e-51 | -8.615850e-47 |
| Msa0783330 | Msa1314340 | 0.815221 | 1.033233e-51 | -8.615850e-47 |
| Msa0783330 | Msa1340260 | 0.801548 | 8.546704e-49 | -8.615850e-47 |
| Msa0783330 | Msa1340270 | 0.807616 | 4.633427e-50 | -8.615850e-47 |
| Msa0783330 | Msa1348880 | 0.826339 | 2.863899e-54 | -8.615850e-47 |
| Msa0783330 | Msa1392260 | 0.800762 | 1.238096e-48 | -8.615850e-47 |
| Msa0783330 | Msa1404540 | 0.826614 | 2.462448e-54 | -8.615850e-47 |
| Msa0783330 | Msa1410210 | 0.813078 | 3.070616e-51 | -8.615850e-47 |
| Msa0783330 | Msa1423880 | 0.812754 | 3.616432e-51 | -8.615850e-47 |
| Msa0783330 | Msa1429900 | 0.805645 | 1.207882e-49 | -8.615850e-47 |
| Msa0783330 | Msa1431060 | 0.825923 | 3.597841e-54 | -8.615850e-47 |
| Msa0783330 | Msa1463670 | 0.803166 | 3.969208e-49 | -8.615850e-47 |
| Msa0157290 | Msa0783330 | 0.802925 | 4.452207e-49 | -8.615850e-47 |
| Msa0173990 | Msa0783330 | 0.800805 | 1.212854e-48 | -8.615850e-47 |
| Msa0191250 | Msa0783330 | 0.823307 | 1.486631e-53 | -8.615850e-47 |
| Msa0227470 | Msa0783330 | 0.802949 | 4.399901e-49 | -8.615850e-47 |
| Msa0388960 | Msa0783330 | 0.821403 | 4.112431e-53 | -8.615850e-47 |
| Msa0399300 | Msa0783330 | 0.820164 | 7.925836e-53 | -8.615850e-47 |
| Msa0410650 | Msa0783330 | 0.817845 | 2.669056e-52 | -8.615850e-47 |
| Msa0431060 | Msa0783330 | 0.800049 | 1.729016e-48 | -8.615850e-47 |
| Msa0452920 | Msa0783330 | 0.802754 | 4.828682e-49 | -8.615850e-47 |
| Msa0260810 | Msa0783330 | 0.833168 | 6.225507e-56 | -8.615850e-47 |
| Msa0276920 | Msa0783330 | 0.800907 | 1.156145e-48 | -8.615850e-47 |
| Msa0284520 | Msa0783330 | 0.806139 | 9.510972e-50 | -8.615850e-47 |
| Msa0297960 | Msa0783330 | 0.814377 | 1.589583e-51 | -8.615850e-47 |
| Msa0305700 | Msa0783330 | 0.817613 | 3.010942e-52 | -8.615850e-47 |
| Msa0311860 | Msa0783330 | 0.804928 | 1.706575e-49 | -8.615850e-47 |
| Msa0326520 | Msa0783330 | 0.813695 | 2.247296e-51 | -8.615850e-47 |
| Msa0335040 | Msa0783330 | 0.827534 | 1.483597e-54 | -8.615850e-47 |
| Msa0338110 | Msa0783330 | 0.812645 | 3.819011e-51 | -8.615850e-47 |
| Msa0340450 | Msa0783330 | 0.802820 | 4.679513e-49 | -8.615850e-47 |
| Msa0356890 | Msa0783330 | -0.809573 | 1.770417e-50 | -8.615850e-47 |
| Msa0484780 | Msa0783330 | 0.856228 | 3.707059e-62 | -8.615850e-47 |
| Msa0512900 | Msa0783330 | 0.813945 | 1.979335e-51 | -8.615850e-47 |
| Msa0520700 | Msa0783330 | 0.813764 | 2.169593e-51 | -8.615850e-47 |
| Msa0555020 | Msa0783330 | 0.804202 | 2.419159e-49 | -8.615850e-47 |
| Msa0558690 | Msa0783330 | 0.816164 | 6.367071e-52 | -8.615850e-47 |
| Msa0572420 | Msa0783330 | 0.821735 | 3.447838e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783330 | MtrunA17_Chr5g0438581 | 96.559 | 494 | 17 | 0 | 1 | 494 | 1 | 494 | 0.0 | 967 |
| Msa0783330 | MtrunA17_Chr5g0445001 | 49.356 | 466 | 232 | 3 | 29 | 494 | 24 | 485 | 3.66e-162 | 468 |
| Msa0783330 | MtrunA17_Chr3g0100111 | 44.764 | 487 | 266 | 3 | 6 | 492 | 260 | 743 | 3.93e-140 | 421 |
| Msa0783330 | MtrunA17_Chr3g0100111 | 38.793 | 116 | 70 | 1 | 25 | 140 | 22 | 136 | 1.53e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783330 | AT1G04970.1 | 58.696 | 460 | 188 | 2 | 30 | 489 | 27 | 484 | 0.0 | 575 |
| Msa0783330 | AT1G04970.2 | 59.143 | 350 | 142 | 1 | 140 | 489 | 10 | 358 | 1.05e-154 | 445 |
| Msa0783330 | AT1G04970.3 | 59.143 | 350 | 142 | 1 | 140 | 489 | 10 | 358 | 1.05e-154 | 445 |
| Msa0783330 | AT3G20270.5 | 37.090 | 488 | 285 | 4 | 4 | 481 | 34 | 509 | 1.29e-116 | 353 |
| Msa0783330 | AT3G20270.2 | 37.090 | 488 | 285 | 4 | 4 | 481 | 34 | 509 | 1.29e-116 | 353 |
| Msa0783330 | AT3G20270.4 | 37.090 | 488 | 285 | 4 | 4 | 481 | 34 | 509 | 1.29e-116 | 353 |
| Msa0783330 | AT3G20270.1 | 37.090 | 488 | 285 | 4 | 4 | 481 | 241 | 716 | 2.46e-113 | 351 |
| Msa0783330 | AT3G20270.3 | 37.090 | 488 | 285 | 4 | 4 | 481 | 241 | 716 | 2.46e-113 | 351 |
| Msa0783330 | AT3G20270.6 | 36.842 | 437 | 254 | 4 | 4 | 430 | 34 | 458 | 1.17e-99 | 308 |
Find 114 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGATATTTCAATAAAAT+TGG | 0.163549 | 5_2:+67254786 | Msa0783330:CDS |
| TTCAAGTTCATTTCATGATT+TGG | 0.181512 | 5_2:-67255608 | None:intergenic |
| TCGGGTTTGGTCAAAATAAA+TGG | 0.212372 | 5_2:+67256427 | Msa0783330:CDS |
| TCTGCGAATGTTCCTTATTC+AGG | 0.262061 | 5_2:+67256519 | Msa0783330:CDS |
| CTTATGAGTATAGTAGTATT+TGG | 0.262312 | 5_2:+67253529 | Msa0783330:CDS |
| TAAGGTGAAACCATGAATAA+TGG | 0.283240 | 5_2:-67257170 | None:intergenic |
| AATGCCTTCTCCAAGATTCT+TGG | 0.286219 | 5_2:-67255008 | None:intergenic |
| TCCTCAGATGATTCAAGCTT+CGG | 0.287755 | 5_2:+67256408 | Msa0783330:intron |
| GCCATGAATTCTCATGTAAT+TGG | 0.288094 | 5_2:+67257495 | Msa0783330:three_prime_UTR |
| TCAAGTTCATTTCATGATTT+GGG | 0.290277 | 5_2:-67255607 | None:intergenic |
| TCACGAAATTAAGACCGTTT+TGG | 0.299456 | 5_2:-67253287 | None:intergenic |
| AACATAAACCTACCTGAATA+AGG | 0.302925 | 5_2:-67256531 | None:intergenic |
| TCCAATTACATGAGAATTCA+TGG | 0.329077 | 5_2:-67257496 | None:intergenic |
| TCGATAATCGTCCACATAAC+TGG | 0.335865 | 5_2:-67257094 | None:intergenic |
| GGTTAGTTGTAATTTGAGTT+TGG | 0.343049 | 5_2:+67253500 | Msa0783330:CDS |
| CTTAGATGTGCATTTGCATA+TGG | 0.343364 | 5_2:-67257130 | None:intergenic |
| GATGAATTTGTGCATAGAAT+TGG | 0.348442 | 5_2:-67255223 | None:intergenic |
| CCTCAGATGATTCAAGCTTC+GGG | 0.358629 | 5_2:+67256409 | Msa0783330:intron |
| TGAGATCCAAGGATCCTTCC+TGG | 0.363469 | 5_2:-67254738 | None:intergenic |
| AATTGAGGTTGTTGGTTCAT+TGG | 0.368933 | 5_2:-67253134 | None:intergenic |
| CCTGTTAAGGTTTCTGATCA+AGG | 0.372849 | 5_2:+67253558 | Msa0783330:CDS |
| TCATCGACCGGAACCTCCTT+TGG | 0.391876 | 5_2:-67255061 | None:intergenic |
| TTACCCTTGCCCATTATTCA+TGG | 0.394754 | 5_2:+67257160 | Msa0783330:CDS |
| TATTTGGTTTGGTCCTGTTA+AGG | 0.399972 | 5_2:+67253545 | Msa0783330:CDS |
| ACCATCAGATTGGGTGACTT+TGG | 0.403675 | 5_2:+67256466 | Msa0783330:CDS |
| GAGTTCTTGTGCCAGAGGTT+AGG | 0.409334 | 5_2:-67255193 | None:intergenic |
| TTCAGGCAAAATTTATGCAT+TGG | 0.412816 | 5_2:+67255504 | Msa0783330:intron |
| CAAATGCACATCTAAGTAAA+GGG | 0.412920 | 5_2:+67257137 | Msa0783330:CDS |
| AATGCTATCACCAAGAATCT+TGG | 0.412923 | 5_2:+67254998 | Msa0783330:CDS |
| GGGTAATTGGAGTGAAACTA+TGG | 0.413154 | 5_2:-67253340 | None:intergenic |
| GATGATTCAAGCTTCGGGTT+TGG | 0.413464 | 5_2:+67256414 | Msa0783330:intron |
| ATCCTTGGATCTCAAACTTA+AGG | 0.414632 | 5_2:+67254747 | Msa0783330:CDS |
| AAGTCTTCCAAAGGAGGTTC+CGG | 0.416513 | 5_2:+67255054 | Msa0783330:CDS |
| CCAATTACCCAATATTGAAA+AGG | 0.416560 | 5_2:+67253353 | Msa0783330:CDS |
| TGAAGGAAGAGGTGAATAGC+AGG | 0.417435 | 5_2:-67253200 | None:intergenic |
| TGATCTGAAATCTCCACAAC+TGG | 0.423855 | 5_2:-67255650 | None:intergenic |
| TCAAGGTTCAGCACAAGTTC+AGG | 0.426430 | 5_2:+67253575 | Msa0783330:CDS |
| TATTATCTCTGCATCTTGTA+AGG | 0.427264 | 5_2:-67257188 | None:intergenic |
| CCTTGATCAGAAACCTTAAC+AGG | 0.427898 | 5_2:-67253558 | None:intergenic |
| AGTTGAACTTACATTGGGAT+TGG | 0.431227 | 5_2:+67254711 | Msa0783330:CDS |
| AAGGTGAAACCATGAATAAT+GGG | 0.440200 | 5_2:-67257169 | None:intergenic |
| GTTGTAATTTGAGTTTGGAT+TGG | 0.444738 | 5_2:+67253505 | Msa0783330:CDS |
| GCAAATGCACATCTAAGTAA+AGG | 0.446962 | 5_2:+67257136 | Msa0783330:CDS |
| AGCAGGAGAAGGAAGAAGAA+AGG | 0.451660 | 5_2:-67253183 | None:intergenic |
| ACTTTGGAATGTCATTGAAA+TGG | 0.456473 | 5_2:+67256482 | Msa0783330:CDS |
| ATGGAAGTTGAACTTACATT+GGG | 0.458236 | 5_2:+67254706 | Msa0783330:CDS |
| TTGTGCCAGAGGTTAGGAAT+AGG | 0.461987 | 5_2:-67255187 | None:intergenic |
| GGGTATTTCCTGTACAATTG+AGG | 0.465380 | 5_2:-67255587 | None:intergenic |
| CGATTGGGTTTGAAACGAAT+GGG | 0.465684 | 5_2:+67255137 | Msa0783330:CDS |
| CATGGAAGTTGAACTTACAT+TGG | 0.465799 | 5_2:+67254705 | Msa0783330:CDS |
| TACTAAGTGAGTCGTCGATT+GGG | 0.466821 | 5_2:+67255122 | Msa0783330:CDS |
| GGAGAACCAGGAAGGATCCT+TGG | 0.471042 | 5_2:+67254732 | Msa0783330:CDS |
| TTATTATTCCTCAATTGTAC+AGG | 0.476048 | 5_2:+67255579 | Msa0783330:CDS |
| TTACTAAGTGAGTCGTCGAT+TGG | 0.479167 | 5_2:+67255121 | Msa0783330:CDS |
| ATCTCAATCCCACTCTCACC+AGG | 0.480034 | 5_2:-67253465 | None:intergenic |
| TTAATAAGGATATGAAAGCT+TGG | 0.481430 | 5_2:-67253260 | None:intergenic |
| ACCAGTAGCATGCATCTCAT+TGG | 0.482084 | 5_2:+67255736 | Msa0783330:CDS |
| GTTGTGGAAATTGAGGTTGT+TGG | 0.482217 | 5_2:-67253142 | None:intergenic |
| GATCTAGATGTATAAAATAC+AGG | 0.482400 | 5_2:+67257452 | Msa0783330:three_prime_UTR |
| GGTGCATCTTGGCTTTATCA+AGG | 0.484778 | 5_2:+67254814 | Msa0783330:CDS |
| GAGTATAGTAGTATTTGGTT+TGG | 0.487613 | 5_2:+67253534 | Msa0783330:CDS |
| TCGATTGGGTTTGAAACGAA+TGG | 0.488846 | 5_2:+67255136 | Msa0783330:CDS |
| CTCGTAGGTACCATCAGATT+GGG | 0.490558 | 5_2:+67256457 | Msa0783330:CDS |
| CCTCGTAGGTACCATCAGAT+TGG | 0.492012 | 5_2:+67256456 | Msa0783330:CDS |
| AATTGGACGGAGGTGCATCT+TGG | 0.496077 | 5_2:+67254803 | Msa0783330:CDS |
| ACCAATGAGATGCATGCTAC+TGG | 0.496446 | 5_2:-67255737 | None:intergenic |
| CAATTACCCAATATTGAAAA+GGG | 0.507561 | 5_2:+67253354 | Msa0783330:CDS |
| TTGTGATTGCGTGGGAATGA+AGG | 0.512955 | 5_2:-67253217 | None:intergenic |
| GGTACAAGAATTCCAATGTT+GGG | 0.515345 | 5_2:+67253375 | Msa0783330:CDS |
| TTTGTCTTCTCCTCCAGTTG+TGG | 0.520132 | 5_2:+67255637 | Msa0783330:CDS |
| AAGAGGTGAATAGCAGGAGA+AGG | 0.528349 | 5_2:-67253194 | None:intergenic |
| AAAATTTATGCATTGGATTG+TGG | 0.529740 | 5_2:+67255511 | Msa0783330:CDS |
| GTCCTTAAGTTTGAGATCCA+AGG | 0.531657 | 5_2:-67254749 | None:intergenic |
| TCCTTATTAATCACCCAAAA+CGG | 0.537388 | 5_2:+67253273 | Msa0783330:CDS |
| ATCTTGGAGAAGGCATTACA+AGG | 0.537501 | 5_2:+67255014 | Msa0783330:CDS |
| CAATCTCTATTGAACACTGC+AGG | 0.538757 | 5_2:+67255548 | Msa0783330:CDS |
| TTTGAAAAGTCTTCCAAAGG+AGG | 0.542602 | 5_2:+67255048 | Msa0783330:CDS |
| GATATTTCAATAAAATTGGA+CGG | 0.542732 | 5_2:+67254790 | Msa0783330:CDS |
| TCATTGAAATGGAGCAACAT+TGG | 0.550438 | 5_2:+67256493 | Msa0783330:CDS |
| ACATCTAGATCTAGGCATGA+TGG | 0.553285 | 5_2:-67257440 | None:intergenic |
| GGGTACAAGAATTCCAATGT+TGG | 0.555784 | 5_2:+67253374 | Msa0783330:CDS |
| AATGTTAACCCTGGTGAGAG+TGG | 0.556311 | 5_2:+67253456 | Msa0783330:CDS |
| CCGTACCTATTCCTAACCTC+TGG | 0.559951 | 5_2:+67255182 | Msa0783330:CDS |
| GTGTTCAATAGAGATTGATC+TGG | 0.560509 | 5_2:-67255542 | None:intergenic |
| GAGATTTCAGATCAGAAAGC+TGG | 0.566302 | 5_2:+67255659 | Msa0783330:CDS |
| TACATTGGGATTGGAGAACC+AGG | 0.574337 | 5_2:+67254720 | Msa0783330:CDS |
| TTTGTGGGTTGTGGAAATTG+AGG | 0.582939 | 5_2:-67253149 | None:intergenic |
| ATGTTAACCCTGGTGAGAGT+GGG | 0.583731 | 5_2:+67253457 | Msa0783330:CDS |
| GTGCATCTTGGCTTTATCAA+GGG | 0.588060 | 5_2:+67254815 | Msa0783330:CDS |
| GAAACCATGAATAATGGGCA+AGG | 0.588237 | 5_2:-67257164 | None:intergenic |
| GATTCTTCTAATGTTAACCC+TGG | 0.591374 | 5_2:+67253447 | Msa0783330:CDS |
| CTCTATTGAACACTGCAGGA+TGG | 0.592149 | 5_2:+67255552 | Msa0783330:CDS |
| AGGTTGAGATTGTGATTGCG+TGG | 0.593779 | 5_2:-67253226 | None:intergenic |
| AACGAAGAGTGATCATCGAC+CGG | 0.595323 | 5_2:-67255073 | None:intergenic |
| TCCAAAGTCACCCAATCTGA+TGG | 0.597147 | 5_2:-67256467 | None:intergenic |
| AAGTAAACACCACCCAACAT+TGG | 0.602941 | 5_2:-67253387 | None:intergenic |
| ATCACCAAGAATCTTGGAGA+AGG | 0.605412 | 5_2:+67255004 | Msa0783330:CDS |
| CCAGAGGTTAGGAATAGGTA+CGG | 0.612159 | 5_2:-67255182 | None:intergenic |
| TTGCGTGGGAATGAAGGAAG+AGG | 0.616471 | 5_2:-67253211 | None:intergenic |
| TCTGAAATCTCCACAACTGG+AGG | 0.617679 | 5_2:-67255647 | None:intergenic |
| ATAAATGGAAATAACCTCGT+AGG | 0.618799 | 5_2:+67256442 | Msa0783330:CDS |
| GTATTTGAAAAGTCTTCCAA+AGG | 0.621848 | 5_2:+67255045 | Msa0783330:CDS |
| GAAACTTACATCATAATACA+AGG | 0.631205 | 5_2:-67255296 | None:intergenic |
| GGTTGAGATTGTGATTGCGT+GGG | 0.632094 | 5_2:-67253225 | None:intergenic |
| AAACCATGAATAATGGGCAA+GGG | 0.633824 | 5_2:-67257163 | None:intergenic |
| TAATTCAGATGTGCAGACAA+AGG | 0.653589 | 5_2:-67257541 | None:intergenic |
| TTGGGATTGGAGAACCAGGA+AGG | 0.655045 | 5_2:+67254724 | Msa0783330:CDS |
| ACAAGAATTCCAATGTTGGG+TGG | 0.676389 | 5_2:+67253378 | Msa0783330:CDS |
| GATCTCAAACTTAAGGACTG+TGG | 0.688094 | 5_2:+67254754 | Msa0783330:CDS |
| TCTCAATCCCACTCTCACCA+GGG | 0.693872 | 5_2:-67253464 | None:intergenic |
| AAATAACTGAAGATTGCACA+AGG | 0.709739 | 5_2:-67257390 | None:intergenic |
| ATTTCAATAAAATTGGACGG+AGG | 0.711207 | 5_2:+67254793 | Msa0783330:CDS |
| GCTAGCAATCACTTTAGACG+AGG | 0.719991 | 5_2:+67255252 | Msa0783330:CDS |
| CCAATCTGATGGTACCTACG+AGG | 0.737067 | 5_2:-67256456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAAAAATAGGTAAA+AGG | - | chr5_2:67254512-67254531 | None:intergenic | 10.0% |
| !! | TAAAGATATTTCAATAAAAT+TGG | + | chr5_2:67254786-67254805 | Msa0783330:CDS | 10.0% |
| !!! | TTAATTTTCTTGTGATAAAT+TGG | + | chr5_2:67254533-67254552 | Msa0783330:intron | 15.0% |
| !! | CTTCATAAACAAAATAAAAA+AGG | + | chr5_2:67254647-67254666 | Msa0783330:intron | 15.0% |
| !! | AAAGTAAACTTATATAATGA+TGG | - | chr5_2:67256209-67256228 | None:intergenic | 15.0% |
| !!! | CAGTTATTTGTTAATTTTTT+AGG | + | chr5_2:67257404-67257423 | Msa0783330:three_prime_UTR | 15.0% |
| !!! | TTTGTTAATTTTTTAGGTAA+TGG | + | chr5_2:67257410-67257429 | Msa0783330:three_prime_UTR | 15.0% |
| !!! | TTGTTAATTTTTTAGGTAAT+GGG | + | chr5_2:67257411-67257430 | Msa0783330:three_prime_UTR | 15.0% |
| !!! | TTTGTTTGTGTTTTTGATTT+TGG | + | chr5_2:67253614-67253633 | Msa0783330:intron | 20.0% |
| !!! | TTGTTTGTGTTTTTGATTTT+GGG | + | chr5_2:67253615-67253634 | Msa0783330:intron | 20.0% |
| !! | TTTGTATGTATATTGTAGAA+TGG | + | chr5_2:67253638-67253657 | Msa0783330:intron | 20.0% |
| !! | ACATAATCTATTTATGATTG+CGG | + | chr5_2:67253698-67253717 | Msa0783330:intron | 20.0% |
| !! | TTATATCAATGAAGATGATT+TGG | + | chr5_2:67254311-67254330 | Msa0783330:intron | 20.0% |
| !! | TTATATGCATTAATTGATCT+CGG | - | chr5_2:67254375-67254394 | None:intergenic | 20.0% |
| !! | GATATTTCAATAAAATTGGA+CGG | + | chr5_2:67254790-67254809 | Msa0783330:CDS | 20.0% |
| !!! | ATTTTTTCTTACTATGTCAT+TGG | + | chr5_2:67255446-67255465 | Msa0783330:intron | 20.0% |
| !! | AAAAACATACACATAGATTA+TGG | - | chr5_2:67255797-67255816 | None:intergenic | 20.0% |
| !! | ATTCTCTGAATATATTACTT+TGG | + | chr5_2:67255832-67255851 | Msa0783330:intron | 20.0% |
| !! | AGAAATGACAATTTATCATA+AGG | - | chr5_2:67256343-67256362 | None:intergenic | 20.0% |
| !! | AACTTATGATGATTTATGAT+TGG | - | chr5_2:67256608-67256627 | None:intergenic | 20.0% |
| !!! | TGTTAATTTTTTAGGTAATG+GGG | + | chr5_2:67257412-67257431 | Msa0783330:three_prime_UTR | 20.0% |
| !!! | TATTTTATACATCTAGATCT+AGG | - | chr5_2:67257451-67257470 | None:intergenic | 20.0% |
| ! | TTAATAAGGATATGAAAGCT+TGG | - | chr5_2:67253263-67253282 | None:intergenic | 25.0% |
| ! | CAATTACCCAATATTGAAAA+GGG | + | chr5_2:67253354-67253373 | Msa0783330:CDS | 25.0% |
| ! | CTTATGAGTATAGTAGTATT+TGG | + | chr5_2:67253529-67253548 | Msa0783330:CDS | 25.0% |
| ! | TGAATAATTCTTGTGAATGT+GGG | + | chr5_2:67254568-67254587 | Msa0783330:intron | 25.0% |
| ! | AAATAATACTAACAAGCAAC+AGG | - | chr5_2:67254606-67254625 | None:intergenic | 25.0% |
| !!! | AATCTAATAAGTGCTGATTT+TGG | + | chr5_2:67254670-67254689 | Msa0783330:intron | 25.0% |
| ! | AAATGAGCTAGAATCTAATA+TGG | - | chr5_2:67254855-67254874 | None:intergenic | 25.0% |
| ! | GAAACTTACATCATAATACA+AGG | - | chr5_2:67255299-67255318 | None:intergenic | 25.0% |
| ! | AAAATTTATGCATTGGATTG+TGG | + | chr5_2:67255511-67255530 | Msa0783330:CDS | 25.0% |
| ! | TTATTATTCCTCAATTGTAC+AGG | + | chr5_2:67255579-67255598 | Msa0783330:CDS | 25.0% |
| ! | TCAAGTTCATTTCATGATTT+GGG | - | chr5_2:67255610-67255629 | None:intergenic | 25.0% |
| !! | TTCAAGTTCATTTCATGATT+TGG | - | chr5_2:67255611-67255630 | None:intergenic | 25.0% |
| ! | ATATATTCAGAGAATCAGAA+TGG | - | chr5_2:67255827-67255846 | None:intergenic | 25.0% |
| !! | ATAGCAATTTGTTTGAATTC+TGG | - | chr5_2:67255978-67255997 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTGAATTAG+TGG | + | chr5_2:67256020-67256039 | Msa0783330:intron | 25.0% |
| !! | TGATTTCATGTTTTTCTACA+TGG | + | chr5_2:67256228-67256247 | Msa0783330:intron | 25.0% |
| ! | TTGAATAAACATATAGTGTC+TGG | - | chr5_2:67256266-67256285 | None:intergenic | 25.0% |
| ! | TTATTCACAATAGTCATGTT+TGG | - | chr5_2:67257016-67257035 | None:intergenic | 25.0% |
| !! | AACACATTTTATCTACTCAA+TGG | - | chr5_2:67257285-67257304 | None:intergenic | 25.0% |
| !!! | CCTGATTTCTTTCTTTTTTT+TGG | - | chr5_2:67257359-67257378 | None:intergenic | 25.0% |
| ! | CCAAAAAAAAGAAAGAAATC+AGG | + | chr5_2:67257356-67257375 | Msa0783330:three_prime_UTR | 25.0% |
| !!! | GTTAATTTTTTAGGTAATGG+GGG | + | chr5_2:67257413-67257432 | Msa0783330:three_prime_UTR | 25.0% |
| !!! | TTAATTTTTTAGGTAATGGG+GGG | + | chr5_2:67257414-67257433 | Msa0783330:three_prime_UTR | 25.0% |
| ! | GATCTAGATGTATAAAATAC+AGG | + | chr5_2:67257452-67257471 | Msa0783330:three_prime_UTR | 25.0% |
| !!! | AAGGTTGCATTTTGATTTGT+GGG | - | chr5_2:67253167-67253186 | None:intergenic | 30.0% |
| !!! | AAAGGTTGCATTTTGATTTG+TGG | - | chr5_2:67253168-67253187 | None:intergenic | 30.0% |
| !! | GATATGAAAGCTTGGTTTTT+GGG | - | chr5_2:67253255-67253274 | None:intergenic | 30.0% |
| TCCTTATTAATCACCCAAAA+CGG | + | chr5_2:67253273-67253292 | Msa0783330:CDS | 30.0% | |
| ! | CCTTTTCAATATTGGGTAAT+TGG | - | chr5_2:67253356-67253375 | None:intergenic | 30.0% |
| CCAATTACCCAATATTGAAA+AGG | + | chr5_2:67253353-67253372 | Msa0783330:CDS | 30.0% | |
| ! | CTTGTACCCTTTTCAATATT+GGG | - | chr5_2:67253363-67253382 | None:intergenic | 30.0% |
| ! | TCTTGTACCCTTTTCAATAT+TGG | - | chr5_2:67253364-67253383 | None:intergenic | 30.0% |
| ! | GGTTAGTTGTAATTTGAGTT+TGG | + | chr5_2:67253500-67253519 | Msa0783330:CDS | 30.0% |
| ! | GTTGTAATTTGAGTTTGGAT+TGG | + | chr5_2:67253505-67253524 | Msa0783330:CDS | 30.0% |
| GAGTATAGTAGTATTTGGTT+TGG | + | chr5_2:67253534-67253553 | Msa0783330:CDS | 30.0% | |
| TCTATTTATGATTGCGGTTT+AGG | + | chr5_2:67253704-67253723 | Msa0783330:intron | 30.0% | |
| ! | CACATTCACATGAGATTTTA+AGG | - | chr5_2:67253888-67253907 | None:intergenic | 30.0% |
| TACACATAAAGAACAAGTCT+TGG | - | chr5_2:67254127-67254146 | None:intergenic | 30.0% | |
| TTTAGGAACCTTAAAGACTA+AGG | + | chr5_2:67254173-67254192 | Msa0783330:intron | 30.0% | |
| TTAGGAACCTTAAAGACTAA+GGG | + | chr5_2:67254174-67254193 | Msa0783330:intron | 30.0% | |
| AACCGACCAATTTAAATTGA+TGG | + | chr5_2:67254349-67254368 | Msa0783330:intron | 30.0% | |
| GTGAATAATTCTTGTGAATG+TGG | + | chr5_2:67254567-67254586 | Msa0783330:intron | 30.0% | |
| !!! | AATAAGTGCTGATTTTGGAA+AGG | + | chr5_2:67254675-67254694 | Msa0783330:intron | 30.0% |
| ATGGAAGTTGAACTTACATT+GGG | + | chr5_2:67254706-67254725 | Msa0783330:CDS | 30.0% | |
| ATTTCAATAAAATTGGACGG+AGG | + | chr5_2:67254793-67254812 | Msa0783330:CDS | 30.0% | |
| ! | TGTGACAGAAAACGATTTTA+TGG | + | chr5_2:67254897-67254916 | Msa0783330:intron | 30.0% |
| !!! | AGTTTTGATTCATACCTAAC+AGG | + | chr5_2:67254933-67254952 | Msa0783330:intron | 30.0% |
| GTATTTGAAAAGTCTTCCAA+AGG | + | chr5_2:67255045-67255064 | Msa0783330:CDS | 30.0% | |
| GATGAATTTGTGCATAGAAT+TGG | - | chr5_2:67255226-67255245 | None:intergenic | 30.0% | |
| TAAGTTTCGATGTTTGATCA+TGG | + | chr5_2:67255311-67255330 | Msa0783330:intron | 30.0% | |
| TAAAACATTCGTCTTATGCA+TGG | + | chr5_2:67255409-67255428 | Msa0783330:intron | 30.0% | |
| TTCAGGCAAAATTTATGCAT+TGG | + | chr5_2:67255504-67255523 | Msa0783330:intron | 30.0% | |
| !! | ATTAATTATATGGGCTAGTG+TGG | + | chr5_2:67255887-67255906 | Msa0783330:intron | 30.0% |
| ! | CAATTTGTTTGAATTCTGGT+AGG | - | chr5_2:67255974-67255993 | None:intergenic | 30.0% |
| ATAAATGGAAATAACCTCGT+AGG | + | chr5_2:67256442-67256461 | Msa0783330:CDS | 30.0% | |
| !! | ACTTTGGAATGTCATTGAAA+TGG | + | chr5_2:67256482-67256501 | Msa0783330:CDS | 30.0% |
| AACATAAACCTACCTGAATA+AGG | - | chr5_2:67256534-67256553 | None:intergenic | 30.0% | |
| CCTGTGTTTAAATCTCAATA+CGG | + | chr5_2:67256653-67256672 | Msa0783330:intron | 30.0% | |
| AAACTTCTTTATGCTTTCAG+TGG | + | chr5_2:67256699-67256718 | Msa0783330:intron | 30.0% | |
| AAACATACCATATGTGTCTT+AGG | - | chr5_2:67256738-67256757 | None:intergenic | 30.0% | |
| CACATATGGTATGTTTGAAT+TGG | + | chr5_2:67256742-67256761 | Msa0783330:intron | 30.0% | |
| ! | TGTGTGATTGAGAGATTTTA+TGG | + | chr5_2:67256797-67256816 | Msa0783330:intron | 30.0% |
| AATAAGTTAAAAACAGCTCC+TGG | - | chr5_2:67256841-67256860 | None:intergenic | 30.0% | |
| !! | ACGCTCTTTAAGATAGATTA+TGG | + | chr5_2:67256866-67256885 | Msa0783330:intron | 30.0% |
| CAAATGCACATCTAAGTAAA+GGG | + | chr5_2:67257137-67257156 | Msa0783330:CDS | 30.0% | |
| AAGGTGAAACCATGAATAAT+GGG | - | chr5_2:67257172-67257191 | None:intergenic | 30.0% | |
| TAAGGTGAAACCATGAATAA+TGG | - | chr5_2:67257173-67257192 | None:intergenic | 30.0% | |
| TATTATCTCTGCATCTTGTA+AGG | - | chr5_2:67257191-67257210 | None:intergenic | 30.0% | |
| AAATAACTGAAGATTGCACA+AGG | - | chr5_2:67257393-67257412 | None:intergenic | 30.0% | |
| TCCAATTACATGAGAATTCA+TGG | - | chr5_2:67257499-67257518 | None:intergenic | 30.0% | |
| !! | AATTGAGGTTGTTGGTTCAT+TGG | - | chr5_2:67253137-67253156 | None:intergenic | 35.0% |
| !! | GGATATGAAAGCTTGGTTTT+TGG | - | chr5_2:67253256-67253275 | None:intergenic | 35.0% |
| !! | ACCGTTTTGGGTGATTAATA+AGG | - | chr5_2:67253277-67253296 | None:intergenic | 35.0% |
| ! | CACGAAATTAAGACCGTTTT+GGG | - | chr5_2:67253289-67253308 | None:intergenic | 35.0% |
| ! | TCACGAAATTAAGACCGTTT+TGG | - | chr5_2:67253290-67253309 | None:intergenic | 35.0% |
| GGTACAAGAATTCCAATGTT+GGG | + | chr5_2:67253375-67253394 | Msa0783330:CDS | 35.0% | |
| GATTCTTCTAATGTTAACCC+TGG | + | chr5_2:67253447-67253466 | Msa0783330:CDS | 35.0% | |
| !!! | GGATTGAGATTTTAGCTTCT+GGG | + | chr5_2:67253478-67253497 | Msa0783330:CDS | 35.0% |
| !!! | GATTGAGATTTTAGCTTCTG+GGG | + | chr5_2:67253479-67253498 | Msa0783330:CDS | 35.0% |
| !! | TATTTGGTTTGGTCCTGTTA+AGG | + | chr5_2:67253545-67253564 | Msa0783330:CDS | 35.0% |
| CATGTGAATGTGCAATGTTT+CGG | + | chr5_2:67253896-67253915 | Msa0783330:intron | 35.0% | |
| ATGTGAATGTGCAATGTTTC+GGG | + | chr5_2:67253897-67253916 | Msa0783330:intron | 35.0% | |
| AGTTGTTGATGCATTTCAGA+AGG | + | chr5_2:67253969-67253988 | Msa0783330:intron | 35.0% | |
| TCCTTTGTGAGCTGAATAAA+AGG | + | chr5_2:67254101-67254120 | Msa0783330:intron | 35.0% | |
| GTGTAATCTCATGAAACCAA+AGG | + | chr5_2:67254142-67254161 | Msa0783330:intron | 35.0% | |
| TAATCTCATGAAACCAAAGG+AGG | + | chr5_2:67254145-67254164 | Msa0783330:intron | 35.0% | |
| ! | AACCAAAGGAGGAAACTTTT+AGG | + | chr5_2:67254156-67254175 | Msa0783330:intron | 35.0% |
| TTCCTAAAAGTTTCCTCCTT+TGG | - | chr5_2:67254161-67254180 | None:intergenic | 35.0% | |
| ! | GAAGTAAGTTGGAGAGTTTA+TGG | + | chr5_2:67254236-67254255 | Msa0783330:intron | 35.0% |
| TGTGACACATTTATTGATCC+TGG | + | chr5_2:67254278-67254297 | Msa0783330:intron | 35.0% | |
| GGCCATCAATTTAAATTGGT+CGG | - | chr5_2:67254354-67254373 | None:intergenic | 35.0% | |
| TCTCGGCCATCAATTTAAAT+TGG | - | chr5_2:67254358-67254377 | None:intergenic | 35.0% | |
| TTGTATTGCTACACTGTGAA+TGG | + | chr5_2:67254460-67254479 | Msa0783330:intron | 35.0% | |
| TTCTTGTGATAAATTGGTCC+TGG | + | chr5_2:67254539-67254558 | Msa0783330:intron | 35.0% | |
| AAGAATTATTCACACAAGCC+AGG | - | chr5_2:67254560-67254579 | None:intergenic | 35.0% | |
| !! | TTTTGGAAAGGTTGAAAGCA+TGG | + | chr5_2:67254687-67254706 | Msa0783330:intron | 35.0% |
| CATGGAAGTTGAACTTACAT+TGG | + | chr5_2:67254705-67254724 | Msa0783330:CDS | 35.0% | |
| AGTTGAACTTACATTGGGAT+TGG | + | chr5_2:67254711-67254730 | Msa0783330:CDS | 35.0% | |
| ATCCTTGGATCTCAAACTTA+AGG | + | chr5_2:67254747-67254766 | Msa0783330:CDS | 35.0% | |
| TGTCACATAAAAGTGACACA+TGG | - | chr5_2:67254884-67254903 | None:intergenic | 35.0% | |
| ! | AAAGCATCAAGAATCCTGTT+AGG | - | chr5_2:67254950-67254969 | None:intergenic | 35.0% |
| ! | AGGATTCTTGATGCTTTTGA+AGG | + | chr5_2:67254953-67254972 | Msa0783330:intron | 35.0% |
| ! | GGATTCTTGATGCTTTTGAA+GGG | + | chr5_2:67254954-67254973 | Msa0783330:intron | 35.0% |
| !! | GATGCTTTTGAAGGGAATAT+TGG | + | chr5_2:67254962-67254981 | Msa0783330:CDS | 35.0% |
| AATGCTATCACCAAGAATCT+TGG | + | chr5_2:67254998-67255017 | Msa0783330:CDS | 35.0% | |
| TTTGAAAAGTCTTCCAAAGG+AGG | + | chr5_2:67255048-67255067 | Msa0783330:CDS | 35.0% | |
| GAGAAATTGTTTCGATGTTC+AGG | + | chr5_2:67255487-67255506 | Msa0783330:intron | 35.0% | |
| GTGTTCAATAGAGATTGATC+TGG | - | chr5_2:67255545-67255564 | None:intergenic | 35.0% | |
| AAGACAGTGTTGTCAAATAG+CGG | + | chr5_2:67255934-67255953 | Msa0783330:intron | 35.0% | |
| ATCATAAGGTGTACAGAGAT+GGG | - | chr5_2:67256329-67256348 | None:intergenic | 35.0% | |
| TATCATAAGGTGTACAGAGA+TGG | - | chr5_2:67256330-67256349 | None:intergenic | 35.0% | |
| ! | TCGGGTTTGGTCAAAATAAA+TGG | + | chr5_2:67256427-67256446 | Msa0783330:CDS | 35.0% |
| TCATTGAAATGGAGCAACAT+TGG | + | chr5_2:67256493-67256512 | Msa0783330:CDS | 35.0% | |
| CCGTATTGAGATTTAAACAC+AGG | - | chr5_2:67256656-67256675 | None:intergenic | 35.0% | |
| GTTGAATCCTAAGACACATA+TGG | + | chr5_2:67256728-67256747 | Msa0783330:intron | 35.0% | |
| AATCACACAAGTGCTTATGT+TGG | - | chr5_2:67256786-67256805 | None:intergenic | 35.0% | |
| AAACATCTTATGACATGTCC+AGG | + | chr5_2:67256820-67256839 | Msa0783330:intron | 35.0% | |
| ! | TTAAGAAGTCTCGTTGATGA+AGG | + | chr5_2:67257047-67257066 | Msa0783330:intron | 35.0% |
| ! | TAAGAAGTCTCGTTGATGAA+GGG | + | chr5_2:67257048-67257067 | Msa0783330:intron | 35.0% |
| CTTAGATGTGCATTTGCATA+TGG | - | chr5_2:67257133-67257152 | None:intergenic | 35.0% | |
| GCAAATGCACATCTAAGTAA+AGG | + | chr5_2:67257136-67257155 | Msa0783330:CDS | 35.0% | |
| !! | AAACCATGAATAATGGGCAA+GGG | - | chr5_2:67257166-67257185 | None:intergenic | 35.0% |
| GCCATGAATTCTCATGTAAT+TGG | + | chr5_2:67257495-67257514 | Msa0783330:three_prime_UTR | 35.0% | |
| GTTGTGGAAATTGAGGTTGT+TGG | - | chr5_2:67253145-67253164 | None:intergenic | 40.0% | |
| ! | TTTGTGGGTTGTGGAAATTG+AGG | - | chr5_2:67253152-67253171 | None:intergenic | 40.0% |
| !!! | GCATTTTGATTTGTGGGTTG+TGG | - | chr5_2:67253161-67253180 | None:intergenic | 40.0% |
| !!! | AAAGCTTGGTTTTTGGGTTG+AGG | - | chr5_2:67253249-67253268 | None:intergenic | 40.0% |
| GGGTAATTGGAGTGAAACTA+TGG | - | chr5_2:67253343-67253362 | None:intergenic | 40.0% | |
| GGGTACAAGAATTCCAATGT+TGG | + | chr5_2:67253374-67253393 | Msa0783330:CDS | 40.0% | |
| ACAAGAATTCCAATGTTGGG+TGG | + | chr5_2:67253378-67253397 | Msa0783330:CDS | 40.0% | |
| AAGTAAACACCACCCAACAT+TGG | - | chr5_2:67253390-67253409 | None:intergenic | 40.0% | |
| !!! | GGGATTGAGATTTTAGCTTC+TGG | + | chr5_2:67253477-67253496 | Msa0783330:CDS | 40.0% |
| CCTTGATCAGAAACCTTAAC+AGG | - | chr5_2:67253561-67253580 | None:intergenic | 40.0% | |
| CCTGTTAAGGTTTCTGATCA+AGG | + | chr5_2:67253558-67253577 | Msa0783330:CDS | 40.0% | |
| !! | ATTGCGGTTTAGGCTTTGTT+TGG | + | chr5_2:67253714-67253733 | Msa0783330:intron | 40.0% |
| ! | GCCTTTTATTCAGCTCACAA+AGG | - | chr5_2:67254105-67254124 | None:intergenic | 40.0% |
| ACCTTAAAGACTAAGGGTTG+AGG | + | chr5_2:67254180-67254199 | Msa0783330:intron | 40.0% | |
| ! | ACCTCAACCCTTAGTCTTTA+AGG | - | chr5_2:67254184-67254203 | None:intergenic | 40.0% |
| ! | TGATATAAGATCAGAGTGCC+AGG | - | chr5_2:67254299-67254318 | None:intergenic | 40.0% |
| ! | GTCCTTAAGTTTGAGATCCA+AGG | - | chr5_2:67254752-67254771 | None:intergenic | 40.0% |
| GATCTCAAACTTAAGGACTG+TGG | + | chr5_2:67254754-67254773 | Msa0783330:CDS | 40.0% | |
| !! | GTGCATCTTGGCTTTATCAA+GGG | + | chr5_2:67254815-67254834 | Msa0783330:CDS | 40.0% |
| !! | TCTTGGCTTTATCAAGGGTA+TGG | + | chr5_2:67254820-67254839 | Msa0783330:intron | 40.0% |
| ATCACCAAGAATCTTGGAGA+AGG | + | chr5_2:67255004-67255023 | Msa0783330:CDS | 40.0% | |
| AATGCCTTCTCCAAGATTCT+TGG | - | chr5_2:67255011-67255030 | None:intergenic | 40.0% | |
| !! | ATCTTGGAGAAGGCATTACA+AGG | + | chr5_2:67255014-67255033 | Msa0783330:CDS | 40.0% |
| TTACTAAGTGAGTCGTCGAT+TGG | + | chr5_2:67255121-67255140 | Msa0783330:CDS | 40.0% | |
| ! | TACTAAGTGAGTCGTCGATT+GGG | + | chr5_2:67255122-67255141 | Msa0783330:CDS | 40.0% |
| ! | TCGATTGGGTTTGAAACGAA+TGG | + | chr5_2:67255136-67255155 | Msa0783330:CDS | 40.0% |
| ! | CGATTGGGTTTGAAACGAAT+GGG | + | chr5_2:67255137-67255156 | Msa0783330:CDS | 40.0% |
| AAGAACTCTGGATCATGGTT+CGG | - | chr5_2:67255363-67255382 | None:intergenic | 40.0% | |
| CATCAAACAGACAAGAACTC+TGG | - | chr5_2:67255375-67255394 | None:intergenic | 40.0% | |
| GTTCTTGTCTGTTTGATGTC+TGG | + | chr5_2:67255377-67255396 | Msa0783330:intron | 40.0% | |
| TGTCTGTTTGATGTCTGGTT+CGG | + | chr5_2:67255382-67255401 | Msa0783330:intron | 40.0% | |
| CAATCTCTATTGAACACTGC+AGG | + | chr5_2:67255548-67255567 | Msa0783330:CDS | 40.0% | |
| GGGTATTTCCTGTACAATTG+AGG | - | chr5_2:67255590-67255609 | None:intergenic | 40.0% | |
| ! | TGATCTGAAATCTCCACAAC+TGG | - | chr5_2:67255653-67255672 | None:intergenic | 40.0% |
| GAGATTTCAGATCAGAAAGC+TGG | + | chr5_2:67255659-67255678 | Msa0783330:CDS | 40.0% | |
| TCAGAGAATCAGAATGGTGA+AGG | - | chr5_2:67255821-67255840 | None:intergenic | 40.0% | |
| !! | AATTATATGGGCTAGTGTGG+TGG | + | chr5_2:67255890-67255909 | Msa0783330:intron | 40.0% |
| ! | AAGACTTGCTCAAGAAGACT+GGG | + | chr5_2:67256110-67256129 | Msa0783330:intron | 40.0% |
| AATCATCTGAGGAAACAGGA+TGG | - | chr5_2:67256401-67256420 | None:intergenic | 40.0% | |
| CTTGAATCATCTGAGGAAAC+AGG | - | chr5_2:67256405-67256424 | None:intergenic | 40.0% | |
| TCCTCAGATGATTCAAGCTT+CGG | + | chr5_2:67256408-67256427 | Msa0783330:intron | 40.0% | |
| TCTGCGAATGTTCCTTATTC+AGG | + | chr5_2:67256519-67256538 | Msa0783330:CDS | 40.0% | |
| CGAATGTTCCTTATTCAGGT+AGG | + | chr5_2:67256523-67256542 | Msa0783330:intron | 40.0% | |
| ! | TTTTACTGCAGCCAGTTATG+TGG | + | chr5_2:67257083-67257102 | Msa0783330:intron | 40.0% |
| TCGATAATCGTCCACATAAC+TGG | - | chr5_2:67257097-67257116 | None:intergenic | 40.0% | |
| TTACCCTTGCCCATTATTCA+TGG | + | chr5_2:67257160-67257179 | Msa0783330:CDS | 40.0% | |
| !! | GAAACCATGAATAATGGGCA+AGG | - | chr5_2:67257167-67257186 | None:intergenic | 40.0% |
| ACATCTAGATCTAGGCATGA+TGG | - | chr5_2:67257443-67257462 | None:intergenic | 40.0% | |
| AGCAGGAGAAGGAAGAAGAA+AGG | - | chr5_2:67253186-67253205 | None:intergenic | 45.0% | |
| AAGAGGTGAATAGCAGGAGA+AGG | - | chr5_2:67253197-67253216 | None:intergenic | 45.0% | |
| TGAAGGAAGAGGTGAATAGC+AGG | - | chr5_2:67253203-67253222 | None:intergenic | 45.0% | |
| TTGTGATTGCGTGGGAATGA+AGG | - | chr5_2:67253220-67253239 | None:intergenic | 45.0% | |
| GGTTGAGATTGTGATTGCGT+GGG | - | chr5_2:67253228-67253247 | None:intergenic | 45.0% | |
| AGGTTGAGATTGTGATTGCG+TGG | - | chr5_2:67253229-67253248 | None:intergenic | 45.0% | |
| AATGTTAACCCTGGTGAGAG+TGG | + | chr5_2:67253456-67253475 | Msa0783330:CDS | 45.0% | |
| ATGTTAACCCTGGTGAGAGT+GGG | + | chr5_2:67253457-67253476 | Msa0783330:CDS | 45.0% | |
| TCAAGGTTCAGCACAAGTTC+AGG | + | chr5_2:67253575-67253594 | Msa0783330:CDS | 45.0% | |
| TGATGCATTTCAGAAGGACC+AGG | + | chr5_2:67253975-67253994 | Msa0783330:intron | 45.0% | |
| CATTTCAGAAGGACCAGGTT+CGG | + | chr5_2:67253980-67253999 | Msa0783330:intron | 45.0% | |
| ACTAAGGGTTGAGGTCTTCA+GGG | + | chr5_2:67254189-67254208 | Msa0783330:intron | 45.0% | |
| TTTGCCCTTTGGGTCTCTTT+CGG | + | chr5_2:67254214-67254233 | Msa0783330:intron | 45.0% | |
| ACTTCCGAAAGAGACCCAAA+GGG | - | chr5_2:67254221-67254240 | None:intergenic | 45.0% | |
| TACTTCCGAAAGAGACCCAA+AGG | - | chr5_2:67254222-67254241 | None:intergenic | 45.0% | |
| GGTCTCTTTCGGAAGTAAGT+TGG | + | chr5_2:67254225-67254244 | Msa0783330:intron | 45.0% | |
| TACATTGGGATTGGAGAACC+AGG | + | chr5_2:67254720-67254739 | Msa0783330:CDS | 45.0% | |
| !! | GGTGCATCTTGGCTTTATCA+AGG | + | chr5_2:67254814-67254833 | Msa0783330:CDS | 45.0% |
| AAGTCTTCCAAAGGAGGTTC+CGG | + | chr5_2:67255054-67255073 | Msa0783330:CDS | 45.0% | |
| AACGAAGAGTGATCATCGAC+CGG | - | chr5_2:67255076-67255095 | None:intergenic | 45.0% | |
| CCAGAGGTTAGGAATAGGTA+CGG | - | chr5_2:67255185-67255204 | None:intergenic | 45.0% | |
| TTGTGCCAGAGGTTAGGAAT+AGG | - | chr5_2:67255190-67255209 | None:intergenic | 45.0% | |
| !!! | GTTTTGAGTTCTTGTGCCAG+AGG | - | chr5_2:67255201-67255220 | None:intergenic | 45.0% |
| GCTAGCAATCACTTTAGACG+AGG | + | chr5_2:67255252-67255271 | Msa0783330:CDS | 45.0% | |
| CAGACAAGAACTCTGGATCA+TGG | - | chr5_2:67255368-67255387 | None:intergenic | 45.0% | |
| CTCTATTGAACACTGCAGGA+TGG | + | chr5_2:67255552-67255571 | Msa0783330:CDS | 45.0% | |
| TTTGTCTTCTCCTCCAGTTG+TGG | + | chr5_2:67255637-67255656 | Msa0783330:CDS | 45.0% | |
| ! | TCTGAAATCTCCACAACTGG+AGG | - | chr5_2:67255650-67255669 | None:intergenic | 45.0% |
| ACCAGTAGCATGCATCTCAT+TGG | + | chr5_2:67255736-67255755 | Msa0783330:CDS | 45.0% | |
| ACCAATGAGATGCATGCTAC+TGG | - | chr5_2:67255740-67255759 | None:intergenic | 45.0% | |
| GTAGCATGCATCTCATTGGT+AGG | + | chr5_2:67255740-67255759 | Msa0783330:intron | 45.0% | |
| TAGCACAAACCGCTATTCTC+TGG | + | chr5_2:67256079-67256098 | Msa0783330:intron | 45.0% | |
| ! | CAAGACTTGCTCAAGAAGAC+TGG | + | chr5_2:67256109-67256128 | Msa0783330:intron | 45.0% |
| CCTCAGATGATTCAAGCTTC+GGG | + | chr5_2:67256409-67256428 | Msa0783330:intron | 45.0% | |
| ! | GATGATTCAAGCTTCGGGTT+TGG | + | chr5_2:67256414-67256433 | Msa0783330:intron | 45.0% |
| CTCGTAGGTACCATCAGATT+GGG | + | chr5_2:67256457-67256476 | Msa0783330:CDS | 45.0% | |
| ACCATCAGATTGGGTGACTT+TGG | + | chr5_2:67256466-67256485 | Msa0783330:CDS | 45.0% | |
| TCCAAAGTCACCCAATCTGA+TGG | - | chr5_2:67256470-67256489 | None:intergenic | 45.0% | |
| !! | AATTAACTTTATATAAAAAT+AGG | - | chr5_2:67254519-67254538 | None:intergenic | 5.0% |
| !! | TTTAATTATGATTAATTATA+TGG | + | chr5_2:67255877-67255896 | Msa0783330:intron | 5.0% |
| !! | TTAATTATGATTAATTATAT+GGG | + | chr5_2:67255878-67255897 | Msa0783330:intron | 5.0% |
| TTGCGTGGGAATGAAGGAAG+AGG | - | chr5_2:67253214-67253233 | None:intergenic | 50.0% | |
| TCTCAATCCCACTCTCACCA+GGG | - | chr5_2:67253467-67253486 | None:intergenic | 50.0% | |
| ATCTCAATCCCACTCTCACC+AGG | - | chr5_2:67253468-67253487 | None:intergenic | 50.0% | |
| TGTGAACCTGCGCATTATGC+AGG | - | chr5_2:67254009-67254028 | None:intergenic | 50.0% | |
| GACTAAGGGTTGAGGTCTTC+AGG | + | chr5_2:67254188-67254207 | Msa0783330:intron | 50.0% | |
| TCTTCAGGGTCTTTGCCCTT+TGG | + | chr5_2:67254203-67254222 | Msa0783330:intron | 50.0% | |
| CTTCAGGGTCTTTGCCCTTT+GGG | + | chr5_2:67254204-67254223 | Msa0783330:intron | 50.0% | |
| TTGGGATTGGAGAACCAGGA+AGG | + | chr5_2:67254724-67254743 | Msa0783330:CDS | 50.0% | |
| TGAGATCCAAGGATCCTTCC+TGG | - | chr5_2:67254741-67254760 | None:intergenic | 50.0% | |
| ! | AATTGGACGGAGGTGCATCT+TGG | + | chr5_2:67254803-67254822 | Msa0783330:CDS | 50.0% |
| CCGTACCTATTCCTAACCTC+TGG | + | chr5_2:67255182-67255201 | Msa0783330:CDS | 50.0% | |
| GAGTTCTTGTGCCAGAGGTT+AGG | - | chr5_2:67255196-67255215 | None:intergenic | 50.0% | |
| !! | CTCTGGATCATGGTTCGGTT+CGG | - | chr5_2:67255358-67255377 | None:intergenic | 50.0% |
| GCCATAGTACTGTAGCGTAG+CGG | + | chr5_2:67256053-67256072 | Msa0783330:intron | 50.0% | |
| TCCGCTACGCTACAGTACTA+TGG | - | chr5_2:67256057-67256076 | None:intergenic | 50.0% | |
| CACAAACCGCTATTCTCTGG+CGG | + | chr5_2:67256082-67256101 | Msa0783330:intron | 50.0% | |
| TGTCAACCGCCAGAGAATAG+CGG | - | chr5_2:67256091-67256110 | None:intergenic | 50.0% | |
| CCCGAAGCTTGAATCATCTG+AGG | - | chr5_2:67256412-67256431 | None:intergenic | 50.0% | |
| CCAATCTGATGGTACCTACG+AGG | - | chr5_2:67256459-67256478 | None:intergenic | 50.0% | |
| CCTCGTAGGTACCATCAGAT+TGG | + | chr5_2:67256456-67256475 | Msa0783330:CDS | 50.0% | |
| TTGCTTCTGTCTTCTGCGCG+AGG | + | chr5_2:67253922-67253941 | Msa0783330:intron | 55.0% | |
| ATTATGCAGGAGGCCGAACC+TGG | - | chr5_2:67253996-67254015 | None:intergenic | 55.0% | |
| GAACCTGCGCATTATGCAGG+AGG | - | chr5_2:67254006-67254025 | None:intergenic | 55.0% | |
| GGAGAACCAGGAAGGATCCT+TGG | + | chr5_2:67254732-67254751 | Msa0783330:CDS | 55.0% | |
| TCATCGACCGGAACCTCCTT+TGG | - | chr5_2:67255064-67255083 | None:intergenic | 55.0% | |
| TGTCTTCTGCGCGAGGTGCA+AGG | + | chr5_2:67253929-67253948 | Msa0783330:intron | 60.0% | |
| !! | GGTGCAAGGTTTGTTGCGCG+AGG | + | chr5_2:67253943-67253962 | Msa0783330:intron | 60.0% |
| TCTGTGCTGCGCTATGCGCA+TGG | + | chr5_2:67254060-67254079 | Msa0783330:intron | 60.0% | |
| CGGCCTCCTGCATAATGCGC+AGG | + | chr5_2:67254000-67254019 | Msa0783330:intron | 65.0% | |
| TGCTGCGCTATGCGCATGGC+AGG | + | chr5_2:67254064-67254083 | Msa0783330:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 67253129 | 67257552 | 67253129 | ID=Msa0783330;Name=Msa0783330 |
| chr5_2 | mRNA | 67253129 | 67257552 | 67253129 | ID=Msa0783330-mRNA-1;Parent=Msa0783330;Name=Msa0783330-mRNA-1;_AED=0.16;_eAED=0.16;_QI=48|1|1|1|1|1|6|264|494 |
| chr5_2 | exon | 67253129 | 67253596 | 67253129 | ID=Msa0783330-mRNA-1:exon:20198;Parent=Msa0783330-mRNA-1 |
| chr5_2 | exon | 67254697 | 67254836 | 67254697 | ID=Msa0783330-mRNA-1:exon:20199;Parent=Msa0783330-mRNA-1 |
| chr5_2 | exon | 67254955 | 67255309 | 67254955 | ID=Msa0783330-mRNA-1:exon:20200;Parent=Msa0783330-mRNA-1 |
| chr5_2 | exon | 67255509 | 67255757 | 67255509 | ID=Msa0783330-mRNA-1:exon:20201;Parent=Msa0783330-mRNA-1 |
| chr5_2 | exon | 67256415 | 67256540 | 67256415 | ID=Msa0783330-mRNA-1:exon:20202;Parent=Msa0783330-mRNA-1 |
| chr5_2 | exon | 67257094 | 67257552 | 67257094 | ID=Msa0783330-mRNA-1:exon:20203;Parent=Msa0783330-mRNA-1 |
| chr5_2 | five_prime_UTR | 67253129 | 67253176 | 67253129 | ID=Msa0783330-mRNA-1:five_prime_utr;Parent=Msa0783330-mRNA-1 |
| chr5_2 | CDS | 67253177 | 67253596 | 67253177 | ID=Msa0783330-mRNA-1:cds;Parent=Msa0783330-mRNA-1 |
| chr5_2 | CDS | 67254697 | 67254836 | 67254697 | ID=Msa0783330-mRNA-1:cds;Parent=Msa0783330-mRNA-1 |
| chr5_2 | CDS | 67254955 | 67255309 | 67254955 | ID=Msa0783330-mRNA-1:cds;Parent=Msa0783330-mRNA-1 |
| chr5_2 | CDS | 67255509 | 67255757 | 67255509 | ID=Msa0783330-mRNA-1:cds;Parent=Msa0783330-mRNA-1 |
| chr5_2 | CDS | 67256415 | 67256540 | 67256415 | ID=Msa0783330-mRNA-1:cds;Parent=Msa0783330-mRNA-1 |
| chr5_2 | CDS | 67257094 | 67257288 | 67257094 | ID=Msa0783330-mRNA-1:cds;Parent=Msa0783330-mRNA-1 |
| chr5_2 | three_prime_UTR | 67257289 | 67257552 | 67257289 | ID=Msa0783330-mRNA-1:three_prime_utr;Parent=Msa0783330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
