Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832560 | XP_003611113.1 | 94.269 | 506 | 25 | 2 | 1 | 506 | 1 | 502 | 0.0 | 964 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832560 | sp|Q8NBL1|PGLT1_HUMAN | 26.190 | 378 | 228 | 14 | 88 | 442 | 39 | 388 | 6.77e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832560 | G7KDD6 | 94.269 | 506 | 25 | 2 | 1 | 506 | 1 | 502 | 0.0 | 964 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa0832560 | 0.811207 | 7.856928e-51 | -8.615850e-47 |
| Msa0008330 | Msa0832560 | 0.800199 | 1.611985e-48 | -8.615850e-47 |
| Msa0040190 | Msa0832560 | 0.802370 | 5.793827e-49 | -8.615850e-47 |
| Msa0070090 | Msa0832560 | 0.813716 | 2.223160e-51 | -8.615850e-47 |
| Msa0084090 | Msa0832560 | 0.807914 | 4.004613e-50 | -8.615850e-47 |
| Msa0089410 | Msa0832560 | 0.812206 | 4.763517e-51 | -8.615850e-47 |
| Msa0092750 | Msa0832560 | 0.816414 | 5.598170e-52 | -8.615850e-47 |
| Msa0096510 | Msa0832560 | 0.805396 | 1.362136e-49 | -8.615850e-47 |
| Msa0607620 | Msa0832560 | 0.800389 | 1.474489e-48 | -8.615850e-47 |
| Msa0626890 | Msa0832560 | 0.814111 | 1.819261e-51 | -8.615850e-47 |
| Msa0665010 | Msa0832560 | 0.809737 | 1.631636e-50 | -8.615850e-47 |
| Msa0714930 | Msa0832560 | 0.819012 | 1.451874e-52 | -8.615850e-47 |
| Msa0738600 | Msa0832560 | 0.802796 | 4.734014e-49 | -8.615850e-47 |
| Msa0753330 | Msa0832560 | 0.896429 | 3.721564e-76 | -8.615850e-47 |
| Msa0795400 | Msa0832560 | 0.804858 | 1.765788e-49 | -8.615850e-47 |
| Msa0818950 | Msa0832560 | 0.808736 | 2.674330e-50 | -8.615850e-47 |
| Msa0825520 | Msa0832560 | 0.802466 | 5.535335e-49 | -8.615850e-47 |
| Msa0832560 | Msa0899080 | 0.804825 | 1.793422e-49 | -8.615850e-47 |
| Msa0832560 | Msa1008960 | 0.812524 | 4.059508e-51 | -8.615850e-47 |
| Msa0832560 | Msa1031220 | 0.805759 | 1.143327e-49 | -8.615850e-47 |
| Msa0832560 | Msa1033670 | 0.813367 | 2.653655e-51 | -8.615850e-47 |
| Msa0832560 | Msa1042380 | 0.801668 | 8.078579e-49 | -8.615850e-47 |
| Msa0832560 | Msa1044450 | 0.812711 | 3.695787e-51 | -8.615850e-47 |
| Msa0832560 | Msa1125100 | 0.806424 | 8.280646e-50 | -8.615850e-47 |
| Msa0832560 | Msa1125150 | 0.804162 | 2.465310e-49 | -8.615850e-47 |
| Msa0832560 | Msa1161520 | 0.809361 | 1.965916e-50 | -8.615850e-47 |
| Msa0832560 | Msa1203840 | 0.803275 | 3.768018e-49 | -8.615850e-47 |
| Msa0832560 | Msa1211370 | 0.802281 | 6.044974e-49 | -8.615850e-47 |
| Msa0832560 | Msa1289340 | 0.809814 | 1.570672e-50 | -8.615850e-47 |
| Msa0832560 | Msa1356730 | 0.818349 | 2.053555e-52 | -8.615850e-47 |
| Msa0832560 | Msa1358030 | 0.993179 | 5.590530e-198 | -8.615850e-47 |
| Msa0832560 | Msa1384620 | 0.803209 | 3.888671e-49 | -8.615850e-47 |
| Msa0832560 | Msa1391600 | 0.805001 | 1.647743e-49 | -8.615850e-47 |
| Msa0832560 | Msa1397550 | 0.816900 | 4.355736e-52 | -8.615850e-47 |
| Msa0832560 | Msa1413880 | 0.813894 | 2.031233e-51 | -8.615850e-47 |
| Msa0832560 | Msa1431240 | 0.812363 | 4.402921e-51 | -8.615850e-47 |
| Msa0832560 | Msa1433380 | 0.801204 | 1.005597e-48 | -8.615850e-47 |
| Msa0832560 | Msa1451780 | 0.812548 | 4.010263e-51 | -8.615850e-47 |
| Msa0130250 | Msa0832560 | 0.805234 | 1.472634e-49 | -8.615850e-47 |
| Msa0136520 | Msa0832560 | 0.816304 | 5.925050e-52 | -8.615850e-47 |
| Msa0143360 | Msa0832560 | 0.802969 | 4.359395e-49 | -8.615850e-47 |
| Msa0166580 | Msa0832560 | 0.807738 | 4.365274e-50 | -8.615850e-47 |
| Msa0201910 | Msa0832560 | 0.841317 | 5.112909e-58 | -8.615850e-47 |
| Msa0206600 | Msa0832560 | 0.808318 | 3.285712e-50 | -8.615850e-47 |
| Msa0379720 | Msa0832560 | 0.828653 | 7.975226e-55 | -8.615850e-47 |
| Msa0429100 | Msa0832560 | 0.844459 | 7.460664e-59 | -8.615850e-47 |
| Msa0429130 | Msa0832560 | 0.827163 | 1.820723e-54 | -8.615850e-47 |
| Msa0244370 | Msa0832560 | 0.840461 | 8.573941e-58 | -8.615850e-47 |
| Msa0251140 | Msa0832560 | 0.802452 | 5.574169e-49 | -8.615850e-47 |
| Msa0253980 | Msa0832560 | 0.815624 | 8.402922e-52 | -8.615850e-47 |
| Msa0278080 | Msa0832560 | 0.803913 | 2.777577e-49 | -8.615850e-47 |
| Msa0282880 | Msa0832560 | 0.831853 | 1.318603e-55 | -8.615850e-47 |
| Msa0317630 | Msa0832560 | 0.822499 | 2.292995e-53 | -8.615850e-47 |
| Msa0321180 | Msa0832560 | 0.823785 | 1.148607e-53 | -8.615850e-47 |
| Msa0321200 | Msa0832560 | 0.829143 | 6.068951e-55 | -8.615850e-47 |
| Msa0324390 | Msa0832560 | 0.834198 | 3.443078e-56 | -8.615850e-47 |
| Msa0324430 | Msa0832560 | 0.833770 | 4.406427e-56 | -8.615850e-47 |
| Msa0343460 | Msa0832560 | 0.800319 | 1.523815e-48 | -8.615850e-47 |
| Msa0513500 | Msa0832560 | 0.803474 | 3.427349e-49 | -8.615850e-47 |
| Msa0520810 | Msa0832560 | 0.810853 | 9.373371e-51 | -8.615850e-47 |
| Msa0526570 | Msa0832560 | 0.803674 | 3.115138e-49 | -8.615850e-47 |
| Msa0569630 | Msa0832560 | 0.816381 | 5.693807e-52 | -8.615850e-47 |
| Msa0587060 | Msa0832560 | 0.819005 | 1.457346e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832560 | MtrunA17_Chr5g0397701 | 94.269 | 506 | 25 | 2 | 1 | 506 | 1 | 502 | 0.0 | 964 |
| Msa0832560 | MtrunA17_Chr8g0349371 | 59.362 | 470 | 175 | 5 | 49 | 504 | 26 | 493 | 0.0 | 589 |
| Msa0832560 | MtrunA17_Chr8g0349361 | 56.762 | 488 | 189 | 8 | 34 | 502 | 24 | 508 | 0.0 | 580 |
| Msa0832560 | MtrunA17_Chr6g0471441 | 61.253 | 431 | 149 | 5 | 88 | 503 | 75 | 502 | 0.0 | 561 |
| Msa0832560 | MtrunA17_Chr8g0349241 | 56.713 | 432 | 169 | 6 | 77 | 495 | 62 | 488 | 1.65e-178 | 510 |
| Msa0832560 | MtrunA17_Chr7g0247251 | 52.393 | 397 | 170 | 4 | 95 | 475 | 3 | 396 | 2.22e-162 | 466 |
| Msa0832560 | MtrunA17_Chr7g0247261 | 51.079 | 417 | 181 | 7 | 77 | 475 | 32 | 443 | 1.77e-160 | 463 |
| Msa0832560 | MtrunA17_Chr3g0104841 | 41.830 | 459 | 251 | 9 | 24 | 473 | 14 | 465 | 5.28e-123 | 368 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832560 | AT5G23850.1 | 56.531 | 490 | 188 | 8 | 32 | 502 | 51 | 534 | 0.0 | 559 |
| Msa0832560 | AT3G48980.2 | 57.955 | 440 | 159 | 6 | 87 | 503 | 102 | 538 | 0.0 | 555 |
| Msa0832560 | AT3G48980.1 | 57.955 | 440 | 159 | 6 | 87 | 503 | 96 | 532 | 0.0 | 555 |
| Msa0832560 | AT1G63420.1 | 54.257 | 505 | 193 | 7 | 27 | 503 | 81 | 575 | 0.0 | 553 |
| Msa0832560 | AT2G45830.4 | 50.203 | 492 | 220 | 7 | 20 | 501 | 37 | 513 | 0.0 | 525 |
| Msa0832560 | AT2G45830.1 | 50.203 | 492 | 220 | 7 | 20 | 501 | 37 | 513 | 0.0 | 525 |
| Msa0832560 | AT3G61270.1 | 50.505 | 495 | 217 | 6 | 17 | 504 | 20 | 493 | 0.0 | 520 |
| Msa0832560 | AT3G61270.2 | 57.560 | 377 | 151 | 3 | 134 | 504 | 1 | 374 | 7.96e-166 | 474 |
| Msa0832560 | AT2G45830.3 | 57.600 | 375 | 149 | 3 | 134 | 501 | 1 | 372 | 4.54e-165 | 472 |
| Msa0832560 | AT2G45830.6 | 57.600 | 375 | 149 | 3 | 134 | 501 | 1 | 372 | 4.54e-165 | 472 |
| Msa0832560 | AT2G45830.2 | 57.600 | 375 | 149 | 3 | 134 | 501 | 1 | 372 | 4.54e-165 | 472 |
| Msa0832560 | AT2G45830.5 | 57.600 | 375 | 149 | 3 | 134 | 501 | 1 | 372 | 4.54e-165 | 472 |
| Msa0832560 | AT3G61280.1 | 45.896 | 536 | 244 | 9 | 1 | 502 | 7 | 530 | 1.28e-164 | 477 |
| Msa0832560 | AT2G45840.1 | 50.812 | 431 | 190 | 4 | 88 | 503 | 92 | 515 | 6.62e-161 | 467 |
| Msa0832560 | AT3G61290.1 | 50.346 | 433 | 195 | 6 | 88 | 504 | 18 | 446 | 4.67e-154 | 447 |
| Msa0832560 | AT1G63420.2 | 64.686 | 303 | 94 | 3 | 98 | 389 | 157 | 457 | 2.39e-143 | 421 |
| Msa0832560 | AT1G07220.1 | 42.516 | 461 | 246 | 8 | 24 | 472 | 20 | 473 | 4.85e-131 | 390 |
| Msa0832560 | AT3G61280.2 | 43.575 | 358 | 157 | 8 | 1 | 325 | 7 | 352 | 1.44e-90 | 282 |
Find 121 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAGAACCTTATGCTTAT+TGG | 0.143284 | 5_4:-5590902 | Msa0832560:CDS |
| TGCAACATTATTGGCCTATA+AGG | 0.166068 | 5_4:-5590394 | Msa0832560:CDS |
| TACAGCCATTGCAACATTAT+TGG | 0.224609 | 5_4:-5590403 | Msa0832560:CDS |
| CATTTGTCAGTGTCCCTTAT+AGG | 0.257990 | 5_4:+5590380 | None:intergenic |
| GCCTGTTGTGCCCATGGGCT+TGG | 0.290931 | 5_4:-5591612 | Msa0832560:CDS |
| ACTTGACAGGTACAGGAAAT+TGG | 0.312878 | 5_4:-5590024 | Msa0832560:intron |
| TTTCCCTGACTGGTCCTTCT+GGG | 0.316015 | 5_4:-5591537 | Msa0832560:CDS |
| CCCAAGCCCATGGGCACAAC+AGG | 0.325244 | 5_4:+5591611 | None:intergenic |
| CACAGCTCCACGGCTCCTTC+AGG | 0.333183 | 5_4:+5589889 | None:intergenic |
| AATTACTGCTTGAACATGTT+TGG | 0.343612 | 5_4:+5591924 | None:intergenic |
| CCAATCAACTGCATGTTTGA+TGG | 0.347036 | 5_4:+5590352 | None:intergenic |
| AGGAACATTTGCTGCTACTA+AGG | 0.351381 | 5_4:+5592015 | None:intergenic |
| AGGGGAACAAAAGAGTAAAA+TGG | 0.354181 | 5_4:-5590929 | Msa0832560:CDS |
| TGGAATATTCATTTAGCAAA+TGG | 0.360170 | 5_4:+5589938 | None:intergenic |
| CCATCAAACATGCAGTTGAT+TGG | 0.367325 | 5_4:-5590352 | Msa0832560:CDS |
| CTGCTTTCATCTCTTCCCTC+AGG | 0.368068 | 5_4:-5592418 | Msa0832560:CDS |
| GCAACATTATTGGCCTATAA+GGG | 0.371026 | 5_4:-5590393 | Msa0832560:CDS |
| AGTCGTGTTGCAGCAGTATA+AGG | 0.373600 | 5_4:+5590870 | None:intergenic |
| CCTGTTGTGCCCATGGGCTT+GGG | 0.374284 | 5_4:-5591611 | Msa0832560:CDS |
| CATCAAACATGCAGTTGATT+GGG | 0.374429 | 5_4:-5590351 | Msa0832560:CDS |
| TTATGAGTGAATCCATGGTT+AGG | 0.390989 | 5_4:-5589819 | Msa0832560:CDS |
| AGAGGTGGGAAGATGAATAT+TGG | 0.400013 | 5_4:-5589696 | Msa0832560:CDS |
| TGAACATGTTTGGTTCTTGA+TGG | 0.403380 | 5_4:+5591934 | None:intergenic |
| TGGCTCAAACTTGAGAAGCT+TGG | 0.409168 | 5_4:+5589918 | None:intergenic |
| CATTTGCTGCTACTAAGGTT+TGG | 0.412482 | 5_4:+5592020 | None:intergenic |
| TTTATTAGTAATAATTCAAA+AGG | 0.415030 | 5_4:-5592619 | Msa0832560:five_prime_UTR |
| TTTCCTTTCCAATAAGCATA+AGG | 0.416388 | 5_4:+5590894 | None:intergenic |
| CTAAGTGATGTGGGATCAAA+TGG | 0.418582 | 5_4:+5589760 | None:intergenic |
| CTGAGACTAATATACGGCCT+TGG | 0.419735 | 5_4:-5590977 | Msa0832560:CDS |
| CTGACTGGTCCTTCTGGGGT+TGG | 0.423962 | 5_4:-5591532 | Msa0832560:intron |
| GGAGCTGTGCCCGGAGTCCA+TGG | 0.430729 | 5_4:-5589875 | Msa0832560:CDS |
| GAATGAATTCTGATGGAGTA+TGG | 0.430749 | 5_4:+5592535 | None:intergenic |
| AGATACAAAGTTTATATTGA+AGG | 0.435834 | 5_4:-5590521 | Msa0832560:CDS |
| CCCTGGTAAAATTCCAGACT+TGG | 0.439877 | 5_4:-5591660 | Msa0832560:CDS |
| GGCTTGCACAAGATCATATT+CGG | 0.443269 | 5_4:-5589854 | Msa0832560:CDS |
| AAAAGGAATAACGAGAGAAA+TGG | 0.456201 | 5_4:-5591825 | Msa0832560:CDS |
| TGCTTTCATCTCTTCCCTCA+GGG | 0.457221 | 5_4:-5592417 | Msa0832560:intron |
| TCAGGGCTGAGACTAATATA+CGG | 0.461649 | 5_4:-5590983 | Msa0832560:intron |
| AGGTGGTGGGCCCAAGCCCA+TGG | 0.463656 | 5_4:+5591601 | None:intergenic |
| TCAAACATGAGTTCCAAGTC+TGG | 0.465096 | 5_4:+5591647 | None:intergenic |
| GGATCAAATGGAGGAGGCAA+GGG | 0.468934 | 5_4:+5589772 | None:intergenic |
| ACGGCTCCTTCAGGAACTCT+TGG | 0.477411 | 5_4:+5589898 | None:intergenic |
| ACTGTACCTGCGTAAATAAA+CGG | 0.480417 | 5_4:+5590802 | None:intergenic |
| TATGAGTGAATCCATGGTTA+GGG | 0.480560 | 5_4:-5589818 | Msa0832560:CDS |
| GTACAGGAAATTGGTAAAGC+CGG | 0.483609 | 5_4:-5590015 | Msa0832560:CDS |
| AATGGAGGAGGCAAGGGGCA+AGG | 0.487872 | 5_4:+5589778 | None:intergenic |
| TGAGACTAATATACGGCCTT+GGG | 0.487896 | 5_4:-5590976 | Msa0832560:CDS |
| CAACCCCAGAAGGACCAGTC+AGG | 0.488262 | 5_4:+5591533 | None:intergenic |
| AGAGAAGCGTAAAGAGTGGC+AGG | 0.489559 | 5_4:+5592470 | None:intergenic |
| ATGGAGGAGGCAAGGGGCAA+GGG | 0.489670 | 5_4:+5589779 | None:intergenic |
| TCTTCATGAATGAATTCTGA+TGG | 0.492019 | 5_4:+5592528 | None:intergenic |
| GAACCTTATGCTTATTGGAA+AGG | 0.492867 | 5_4:-5590897 | Msa0832560:CDS |
| ATGTTTCAACCGCACAGGAT+TGG | 0.493210 | 5_4:-5590830 | Msa0832560:CDS |
| GTGTGTATGTATTTGCTCAT+TGG | 0.493830 | 5_4:+5589665 | None:intergenic |
| CATTTGATCCCACATCACTT+AGG | 0.497579 | 5_4:-5589759 | Msa0832560:CDS |
| TGGCAGACCAATGTACATAT+AGG | 0.498282 | 5_4:-5590653 | Msa0832560:intron |
| TTCTTGAATAAACTTGCTCC+CGG | 0.505080 | 5_4:+5589996 | None:intergenic |
| TTGTAATGTTTCAACCGCAC+AGG | 0.505206 | 5_4:-5590835 | Msa0832560:CDS |
| GAAATTTATGAGTGAATCCA+TGG | 0.508746 | 5_4:-5589824 | Msa0832560:CDS |
| CAGGAGTCTTTCTGAGAAGA+AGG | 0.509789 | 5_4:+5592489 | None:intergenic |
| CGGTTGAAACATTACAATTG+AGG | 0.511958 | 5_4:+5590841 | None:intergenic |
| AGGAATAACGAGAGAAATGG+TGG | 0.512055 | 5_4:-5591822 | Msa0832560:CDS |
| TACAGGAAATTGGTAAAGCC+GGG | 0.515192 | 5_4:-5590014 | Msa0832560:CDS |
| TTGTGCAAGCCATGGACTCC+GGG | 0.515594 | 5_4:+5589866 | None:intergenic |
| GAGGCTTCACTAATAGTGTA+GGG | 0.515936 | 5_4:+5590453 | None:intergenic |
| AGGAGCCGTGGAGCTGTGCC+CGG | 0.516718 | 5_4:-5589884 | Msa0832560:CDS |
| CTTGTGCAAGCCATGGACTC+CGG | 0.517853 | 5_4:+5589865 | None:intergenic |
| ATGGTACAATTCAGTACTGT+TGG | 0.518317 | 5_4:+5591953 | None:intergenic |
| CGAGGCTTCACTAATAGTGT+AGG | 0.521509 | 5_4:+5590452 | None:intergenic |
| CATCTTCCCACCTCTCAACT+CGG | 0.523375 | 5_4:+5589704 | None:intergenic |
| TGATAAGCCTGTTGTGCCCA+TGG | 0.523385 | 5_4:-5591618 | Msa0832560:CDS |
| TATGTCCGGAGTATTTCAAA+TGG | 0.530428 | 5_4:-5591877 | Msa0832560:CDS |
| GGGATCAAATGGAGGAGGCA+AGG | 0.532099 | 5_4:+5589771 | None:intergenic |
| TTCCCTGACTGGTCCTTCTG+GGG | 0.537571 | 5_4:-5591536 | Msa0832560:CDS |
| AGGATTCAATCACTCAAACT+TGG | 0.539657 | 5_4:-5590673 | Msa0832560:CDS |
| CAGCGGCGGTGATGAGGATG+AGG | 0.541321 | 5_4:+5592438 | None:intergenic |
| TAGCAATGCAAATAGTAAGC+TGG | 0.553109 | 5_4:-5589623 | Msa0832560:three_prime_UTR |
| TTTGTATTTCTATAACTCAA+AGG | 0.553445 | 5_4:+5589565 | None:intergenic |
| TAATAGTGTAGGGGAATCAC+AGG | 0.553816 | 5_4:+5590463 | None:intergenic |
| ATATGATCTTGTGCAAGCCA+TGG | 0.555321 | 5_4:+5589858 | None:intergenic |
| GGTGGAGAAAGCAAAGAAAA+CGG | 0.555442 | 5_4:-5591804 | Msa0832560:CDS |
| TAATCAACCGAGTTGAGAGG+TGG | 0.563561 | 5_4:-5589711 | Msa0832560:CDS |
| TGAAAGCAGCGGCGGTGATG+AGG | 0.565142 | 5_4:+5592432 | None:intergenic |
| TGTAGAAGGTTCCCTAACCA+TGG | 0.568492 | 5_4:+5589807 | None:intergenic |
| GGAACTACCTATATGTACAT+TGG | 0.572220 | 5_4:+5590646 | None:intergenic |
| AAGAGTTCCTGAAGGAGCCG+TGG | 0.572482 | 5_4:-5589896 | Msa0832560:CDS |
| GGTGGTGGGCCCAAGCCCAT+GGG | 0.576300 | 5_4:+5591602 | None:intergenic |
| TTCACGAGGATCTAAAACCA+TGG | 0.579924 | 5_4:-5591853 | Msa0832560:CDS |
| AATAATGTTGCAATGGCTGT+AGG | 0.584450 | 5_4:+5590405 | None:intergenic |
| ATCAAACATGCAGTTGATTG+GGG | 0.586497 | 5_4:-5590350 | Msa0832560:CDS |
| TGAATCCATTTGAAATACTC+CGG | 0.590414 | 5_4:+5591872 | None:intergenic |
| TGGATTAAAGAGTCTGAACA+AGG | 0.592715 | 5_4:-5590693 | Msa0832560:CDS |
| ATAGGCCAATAATGTTGCAA+TGG | 0.599822 | 5_4:+5590398 | None:intergenic |
| GGACTCCGGGCACAGCTCCA+CGG | 0.602661 | 5_4:+5589879 | None:intergenic |
| ATTTAATCAACCGAGTTGAG+AGG | 0.603531 | 5_4:-5589714 | Msa0832560:CDS |
| TTGGTTACTGTGCTGATCGG+TGG | 0.603838 | 5_4:-5591574 | Msa0832560:CDS |
| GCCTTGGGAACATCTTCTGA+AGG | 0.606053 | 5_4:-5590961 | Msa0832560:CDS |
| AACCCCAGAAGGACCAGTCA+GGG | 0.609191 | 5_4:+5591534 | None:intergenic |
| GAGAAGAGAAGCGTAAAGAG+TGG | 0.611727 | 5_4:+5592466 | None:intergenic |
| TGATGGAGTATGGAAGCTCT+AGG | 0.611866 | 5_4:+5592545 | None:intergenic |
| TCCTTCAGAAGATGTTCCCA+AGG | 0.613175 | 5_4:+5590960 | None:intergenic |
| CGGAAATTAACTAACCCTGA+GGG | 0.619210 | 5_4:+5592403 | None:intergenic |
| CTGTGCTGATCGGTGGACAC+AGG | 0.621325 | 5_4:-5591567 | Msa0832560:CDS |
| GATCAAATGGAGGAGGCAAG+GGG | 0.622941 | 5_4:+5589773 | None:intergenic |
| GATGTGGGATCAAATGGAGG+AGG | 0.623679 | 5_4:+5589766 | None:intergenic |
| TTTGAGCCAAGAGTTCCTGA+AGG | 0.639566 | 5_4:-5589904 | Msa0832560:CDS |
| AATCAACCGAGTTGAGAGGT+GGG | 0.639972 | 5_4:-5589710 | Msa0832560:CDS |
| GATAAGCCTGTTGTGCCCAT+GGG | 0.642853 | 5_4:-5591617 | Msa0832560:CDS |
| GGAAGAGATGAAAGCAGCGG+CGG | 0.643188 | 5_4:+5592424 | None:intergenic |
| GAAACTCCGTTTATTTACGC+AGG | 0.643555 | 5_4:-5590808 | Msa0832560:intron |
| ACATACATACCAACCCCAGA+AGG | 0.644873 | 5_4:+5591523 | None:intergenic |
| GAGGGAAGAGATGAAAGCAG+CGG | 0.655130 | 5_4:+5592421 | None:intergenic |
| TATTCAAGAAGAGCTCAACA+TGG | 0.666732 | 5_4:-5589983 | Msa0832560:CDS |
| GTGAAGAAATCGTAGTATCG+AGG | 0.668956 | 5_4:+5590434 | None:intergenic |
| AGTGATGTGGGATCAAATGG+AGG | 0.680524 | 5_4:+5589763 | None:intergenic |
| AGGCTTCACTAATAGTGTAG+GGG | 0.685668 | 5_4:+5590454 | None:intergenic |
| TTTATATTGAAGGATACGCG+TGG | 0.686560 | 5_4:-5590511 | Msa0832560:CDS |
| TTGCACAAGATCATATTCGG+TGG | 0.699977 | 5_4:-5589851 | Msa0832560:CDS |
| CAATTACTGAGAAAGTACCC+TGG | 0.713086 | 5_4:-5591677 | Msa0832560:CDS |
| GTATTTCAAATGGATTCACG+AGG | 0.719253 | 5_4:-5591867 | Msa0832560:CDS |
| ACGGAGTTTCCAATCCTGTG+CGG | 0.723022 | 5_4:+5590821 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAGTAATAATTCAAA+AGG | - | chr5_4:5589507-5589526 | Msa0832560:three_prime_UTR | 10.0% |
| !!! | GACATATTTTATATATTTTA+TGG | - | chr5_4:5591009-5591028 | Msa0832560:intron | 10.0% |
| !! | AACAATGTAATTTACTTAAT+CGG | - | chr5_4:5589800-5589819 | Msa0832560:CDS | 15.0% |
| !! | TAAATCTAATAATGATGTAT+AGG | + | chr5_4:5589913-5589932 | None:intergenic | 15.0% |
| !!! | AAACAGTTTAATCTATTTTT+TGG | - | chr5_4:5590000-5590019 | Msa0832560:CDS | 15.0% |
| !!! | AAGTCTTCTTTGTTTTATTA+AGG | - | chr5_4:5589460-5589479 | Msa0832560:three_prime_UTR | 20.0% |
| !!! | AGTCTTCTTTGTTTTATTAA+GGG | - | chr5_4:5589461-5589480 | Msa0832560:three_prime_UTR | 20.0% |
| !! | TTAATTGAGAAAATTGTGTA+GGG | + | chr5_4:5589782-5589801 | None:intergenic | 20.0% |
| !! | ACAATGTAATTTACTTAATC+GGG | - | chr5_4:5589801-5589820 | Msa0832560:CDS | 20.0% |
| !! | ACATCATTATTAGATTTAGA+TGG | - | chr5_4:5589915-5589934 | Msa0832560:CDS | 20.0% |
| !!! | TTTATTTTTTCATTCTTCGT+AGG | + | chr5_4:5590134-5590153 | None:intergenic | 20.0% |
| !! | AGAATGAAAAAATAAAACAG+AGG | - | chr5_4:5590138-5590157 | Msa0832560:intron | 20.0% |
| !! | ATCCAAATAACATAAAAATG+GGG | + | chr5_4:5590679-5590698 | None:intergenic | 20.0% |
| !! | GATCCAAATAACATAAAAAT+GGG | + | chr5_4:5590680-5590699 | None:intergenic | 20.0% |
| !! | TACATTAATCAACAACTATA+TGG | + | chr5_4:5590702-5590721 | None:intergenic | 20.0% |
| !!! | ATATAGTTGTTGATTAATGT+AGG | - | chr5_4:5590701-5590720 | Msa0832560:intron | 20.0% |
| !! | ACTATAGTTTATTATCTCTA+TGG | + | chr5_4:5590841-5590860 | None:intergenic | 20.0% |
| !! | TAGTTTAAGTACTAATTTCA+TGG | - | chr5_4:5591082-5591101 | Msa0832560:intron | 20.0% |
| !!! | AAATGCAATGTTTTTATTTC+AGG | - | chr5_4:5591125-5591144 | Msa0832560:intron | 20.0% |
| !!! | AATGCAATGTTTTTATTTCA+GGG | - | chr5_4:5591126-5591145 | Msa0832560:intron | 20.0% |
| !!! | ATATTTTGTCACAAATATGT+AGG | - | chr5_4:5591408-5591427 | Msa0832560:intron | 20.0% |
| !!! | AAATGTACATGATGAATTTT+GGG | + | chr5_4:5591544-5591563 | None:intergenic | 20.0% |
| !!! | TAAATGTACATGATGAATTT+TGG | + | chr5_4:5591545-5591564 | None:intergenic | 20.0% |
| !! | AGATACAAAGTTTATATTGA+AGG | - | chr5_4:5591605-5591624 | Msa0832560:CDS | 20.0% |
| !!! | TTTGTATTTCTATAACTCAA+AGG | + | chr5_4:5592564-5592583 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTAAGGGTCTTT+TGG | - | chr5_4:5589469-5589488 | Msa0832560:three_prime_UTR | 25.0% |
| ! | AATGAATGAGTGTAATTAAG+CGG | + | chr5_4:5589746-5589765 | None:intergenic | 25.0% |
| ! | GTTAATTGAGAAAATTGTGT+AGG | + | chr5_4:5589783-5589802 | None:intergenic | 25.0% |
| ! | CAATGTAATTTACTTAATCG+GGG | - | chr5_4:5589802-5589821 | Msa0832560:CDS | 25.0% |
| ! | TCATTATTAGATTTAGATGG+CGG | - | chr5_4:5589918-5589937 | Msa0832560:CDS | 25.0% |
| !!! | TTTTTTTTTAACTCGATACC+TGG | + | chr5_4:5589975-5589994 | None:intergenic | 25.0% |
| ! | AAACAAGTAGAATTGTGTTT+AGG | + | chr5_4:5590630-5590649 | None:intergenic | 25.0% |
| ! | GGATCCAAATAACATAAAAA+TGG | + | chr5_4:5590681-5590700 | None:intergenic | 25.0% |
| !! | ATAATCACATTTTCTTGTCT+GGG | + | chr5_4:5590765-5590784 | None:intergenic | 25.0% |
| !! | AATAATCACATTTTCTTGTC+TGG | + | chr5_4:5590766-5590785 | None:intergenic | 25.0% |
| !! | TCTTCTGAAGGATATAAAAA+AGG | - | chr5_4:5591177-5591196 | Msa0832560:intron | 25.0% |
| !! | CTTCTGAAGGATATAAAAAA+GGG | - | chr5_4:5591178-5591197 | Msa0832560:intron | 25.0% |
| !! | TTCTGAAGGATATAAAAAAG+GGG | - | chr5_4:5591179-5591198 | Msa0832560:intron | 25.0% |
| !! | ATATGTGATCTGAGATTAAA+TGG | + | chr5_4:5591504-5591523 | None:intergenic | 25.0% |
| ! | AAACTTTGTATCTGATATCA+AGG | + | chr5_4:5591598-5591617 | None:intergenic | 25.0% |
| !! | TTTAAGACAAATGAATGACA+AGG | + | chr5_4:5591855-5591874 | None:intergenic | 25.0% |
| ! | AGTAGTAAAGATTTAAATCG+TGG | - | chr5_4:5591903-5591922 | Msa0832560:CDS | 25.0% |
| !!! | ATCTTAGTCAAATGTTTTTG+AGG | - | chr5_4:5591948-5591967 | Msa0832560:CDS | 25.0% |
| ! | TGGAATATTCATTTAGCAAA+TGG | + | chr5_4:5592191-5592210 | None:intergenic | 25.0% |
| ! | TAAAAAATCCTAAGTGATGT+GGG | + | chr5_4:5592378-5592397 | None:intergenic | 25.0% |
| ! | ATAAAAAATCCTAAGTGATG+TGG | + | chr5_4:5592379-5592398 | None:intergenic | 25.0% |
| TCTTCATGAATGAATTCTGA+TGG | + | chr5_4:5589601-5589620 | None:intergenic | 30.0% | |
| CATTATTAGATTTAGATGGC+GGG | - | chr5_4:5589919-5589938 | Msa0832560:CDS | 30.0% | |
| AATTACTGCTTGAACATGTT+TGG | + | chr5_4:5590205-5590224 | None:intergenic | 30.0% | |
| !!! | ACCATGTTGTTTTTTGTTGT+CGG | + | chr5_4:5590230-5590249 | None:intergenic | 30.0% |
| AAAAAACAACATGGTATGTC+CGG | - | chr5_4:5590235-5590254 | Msa0832560:intron | 30.0% | |
| ! | TGAATCCATTTGAAATACTC+CGG | + | chr5_4:5590257-5590276 | None:intergenic | 30.0% |
| CTAAAACCATGGAAGAAAAA+AGG | - | chr5_4:5590284-5590303 | Msa0832560:intron | 30.0% | |
| !!! | GTTATTCCTTTTTTCTTCCA+TGG | + | chr5_4:5590293-5590312 | None:intergenic | 30.0% |
| AAAAGGAATAACGAGAGAAA+TGG | - | chr5_4:5590301-5590320 | Msa0832560:intron | 30.0% | |
| TCATTGTCATTCAAAGTTTG+TGG | - | chr5_4:5590724-5590743 | Msa0832560:intron | 30.0% | |
| AGAGATAATAACTAACCAAC+TGG | + | chr5_4:5590815-5590834 | None:intergenic | 30.0% | |
| !! | ATTGTTGCTTCTAAGATGTA+GGG | + | chr5_4:5590983-5591002 | None:intergenic | 30.0% |
| !! | AATTGTTGCTTCTAAGATGT+AGG | + | chr5_4:5590984-5591003 | None:intergenic | 30.0% |
| TTTCCTTTCCAATAAGCATA+AGG | + | chr5_4:5591235-5591254 | None:intergenic | 30.0% | |
| TACAGTACAGACATATCTAA+AGG | - | chr5_4:5591341-5591360 | Msa0832560:intron | 30.0% | |
| TTGTCACAAATATGTAGGAT+TGG | - | chr5_4:5591413-5591432 | Msa0832560:intron | 30.0% | |
| GTGGTTATGATATTATATCG+CGG | - | chr5_4:5591922-5591941 | Msa0832560:CDS | 30.0% | |
| GAAATTTATGAGTGAATCCA+TGG | - | chr5_4:5592302-5592321 | Msa0832560:intron | 30.0% | |
| !! | AGCTGTTTTCAGTTAGAAGA+AGG | + | chr5_4:5589560-5589579 | None:intergenic | 35.0% |
| GAATGAATTCTGATGGAGTA+TGG | + | chr5_4:5589594-5589613 | None:intergenic | 35.0% | |
| AACACATGAATTGTTAGCAG+AGG | + | chr5_4:5589883-5589902 | None:intergenic | 35.0% | |
| TCTGCTAACAATTCATGTGT+TGG | - | chr5_4:5589882-5589901 | Msa0832560:CDS | 35.0% | |
| CTGCTAACAATTCATGTGTT+GGG | - | chr5_4:5589883-5589902 | Msa0832560:CDS | 35.0% | |
| ! | GTTGTTGTTGTTGTTGTTGT+TGG | + | chr5_4:5590071-5590090 | None:intergenic | 35.0% |
| ATGGTACAATTCAGTACTGT+TGG | + | chr5_4:5590176-5590195 | None:intergenic | 35.0% | |
| !! | TGAACATGTTTGGTTCTTGA+TGG | + | chr5_4:5590195-5590214 | None:intergenic | 35.0% |
| TCCGACAACAAAAAACAACA+TGG | - | chr5_4:5590226-5590245 | Msa0832560:intron | 35.0% | |
| ! | TATGTCCGGAGTATTTCAAA+TGG | - | chr5_4:5590249-5590268 | Msa0832560:intron | 35.0% |
| ! | GTATTTCAAATGGATTCACG+AGG | - | chr5_4:5590259-5590278 | Msa0832560:intron | 35.0% |
| !! | TTTAGGTTGGTGGTGAAAAA+TGG | - | chr5_4:5590350-5590369 | Msa0832560:CDS | 35.0% |
| !! | TTGGTGGTGAAAAATGGAAA+AGG | - | chr5_4:5590356-5590375 | Msa0832560:CDS | 35.0% |
| ! | TGGTGGTGAAAAATGGAAAA+GGG | - | chr5_4:5590357-5590376 | Msa0832560:CDS | 35.0% |
| !!! | TTTTTGGTTACTGTGCTGAT+CGG | - | chr5_4:5590549-5590568 | Msa0832560:intron | 35.0% |
| !! | GGCCCCATTTTTATGTTATT+TGG | - | chr5_4:5590674-5590693 | Msa0832560:CDS | 35.0% |
| ! | TCATACCTTTGTTATGTCGA+CGG | - | chr5_4:5590788-5590807 | Msa0832560:intron | 35.0% |
| GATGTAGGGAACAAAATTGA+CGG | + | chr5_4:5590969-5590988 | None:intergenic | 35.0% | |
| AGGGGAACAAAAGAGTAAAA+TGG | - | chr5_4:5591197-5591216 | Msa0832560:intron | 35.0% | |
| ACAGAGAACCTTATGCTTAT+TGG | - | chr5_4:5591224-5591243 | Msa0832560:intron | 35.0% | |
| GAACCTTATGCTTATTGGAA+AGG | - | chr5_4:5591229-5591248 | Msa0832560:intron | 35.0% | |
| CGGTTGAAACATTACAATTG+AGG | + | chr5_4:5591288-5591307 | None:intergenic | 35.0% | |
| ACTGTACCTGCGTAAATAAA+CGG | + | chr5_4:5591327-5591346 | None:intergenic | 35.0% | |
| TGGATTAAAGAGTCTGAACA+AGG | - | chr5_4:5591433-5591452 | Msa0832560:intron | 35.0% | |
| AGGATTCAATCACTCAAACT+TGG | - | chr5_4:5591453-5591472 | Msa0832560:intron | 35.0% | |
| GGAACTACCTATATGTACAT+TGG | + | chr5_4:5591483-5591502 | None:intergenic | 35.0% | |
| TTTATATTGAAGGATACGCG+TGG | - | chr5_4:5591615-5591634 | Msa0832560:CDS | 35.0% | |
| AATAATGTTGCAATGGCTGT+AGG | + | chr5_4:5591724-5591743 | None:intergenic | 35.0% | |
| TACAGCCATTGCAACATTAT+TGG | - | chr5_4:5591723-5591742 | Msa0832560:CDS | 35.0% | |
| ATAGGCCAATAATGTTGCAA+TGG | + | chr5_4:5591731-5591750 | None:intergenic | 35.0% | |
| ! | TGCAACATTATTGGCCTATA+AGG | - | chr5_4:5591732-5591751 | Msa0832560:CDS | 35.0% |
| ! | GCAACATTATTGGCCTATAA+GGG | - | chr5_4:5591733-5591752 | Msa0832560:CDS | 35.0% |
| CATCAAACATGCAGTTGATT+GGG | - | chr5_4:5591775-5591794 | Msa0832560:CDS | 35.0% | |
| ATCAAACATGCAGTTGATTG+GGG | - | chr5_4:5591776-5591795 | Msa0832560:CDS | 35.0% | |
| GAATATCGAAAGATATGCGA+TGG | + | chr5_4:5591833-5591852 | None:intergenic | 35.0% | |
| CAACCTCAATTGTAATTGCA+AGG | - | chr5_4:5591971-5591990 | Msa0832560:CDS | 35.0% | |
| ! | TTCTTGAATAAACTTGCTCC+CGG | + | chr5_4:5592133-5592152 | None:intergenic | 35.0% |
| TATTCAAGAAGAGCTCAACA+TGG | - | chr5_4:5592143-5592162 | Msa0832560:intron | 35.0% | |
| TTATGAGTGAATCCATGGTT+AGG | - | chr5_4:5592307-5592326 | Msa0832560:intron | 35.0% | |
| TATGAGTGAATCCATGGTTA+GGG | - | chr5_4:5592308-5592327 | Msa0832560:intron | 35.0% | |
| ! | ATTTAATCAACCGAGTTGAG+AGG | - | chr5_4:5592412-5592431 | Msa0832560:intron | 35.0% |
| GTGTGTATGTATTTGCTCAT+TGG | + | chr5_4:5592464-5592483 | None:intergenic | 35.0% | |
| TAGCAATGCAAATAGTAAGC+TGG | - | chr5_4:5592503-5592522 | Msa0832560:CDS | 35.0% | |
| CGGAAATTAACTAACCCTGA+GGG | + | chr5_4:5589726-5589745 | None:intergenic | 40.0% | |
| TTCCACAACTTATTCGATCC+TGG | - | chr5_4:5589946-5589965 | Msa0832560:CDS | 40.0% | |
| ! | CATTTGCTGCTACTAAGGTT+TGG | + | chr5_4:5590109-5590128 | None:intergenic | 40.0% |
| ! | AGGAACATTTGCTGCTACTA+AGG | + | chr5_4:5590114-5590133 | None:intergenic | 40.0% |
| ! | TTCACGAGGATCTAAAACCA+TGG | - | chr5_4:5590273-5590292 | Msa0832560:intron | 40.0% |
| AGGAATAACGAGAGAAATGG+TGG | - | chr5_4:5590304-5590323 | Msa0832560:intron | 40.0% | |
| GGTGGAGAAAGCAAAGAAAA+CGG | - | chr5_4:5590322-5590341 | Msa0832560:intron | 40.0% | |
| ! | CAAAGAAAACGGCGCATTTT+AGG | - | chr5_4:5590333-5590352 | Msa0832560:CDS | 40.0% |
| ! | ACGTGATGTTTTCACCGTTT+GGG | - | chr5_4:5590418-5590437 | Msa0832560:CDS | 40.0% |
| TAATTGCAGAATCCCCCAAA+CGG | + | chr5_4:5590435-5590454 | None:intergenic | 40.0% | |
| !! | CAATTACTGAGAAAGTACCC+TGG | - | chr5_4:5590449-5590468 | Msa0832560:CDS | 40.0% |
| !! | CCAAGTCTGGAATTTTACCA+GGG | + | chr5_4:5590469-5590488 | None:intergenic | 40.0% |
| !! | TCCAAGTCTGGAATTTTACC+AGG | + | chr5_4:5590470-5590489 | None:intergenic | 40.0% |
| TCAAACATGAGTTCCAAGTC+TGG | + | chr5_4:5590482-5590501 | None:intergenic | 40.0% | |
| AGTAACCAAAAACAGGTGGT+GGG | + | chr5_4:5590541-5590560 | None:intergenic | 40.0% | |
| TCAGCACAGTAACCAAAAAC+AGG | + | chr5_4:5590548-5590567 | None:intergenic | 40.0% | |
| ! | AGGATATTGTTTTCCCTGAC+TGG | - | chr5_4:5590579-5590598 | Msa0832560:intron | 40.0% |
| TAATTCTCGTGAAGCATGCT+TGG | - | chr5_4:5590653-5590672 | Msa0832560:intron | 40.0% | |
| TCAGGGCTGAGACTAATATA+CGG | - | chr5_4:5591143-5591162 | Msa0832560:intron | 40.0% | |
| TGAGACTAATATACGGCCTT+GGG | - | chr5_4:5591150-5591169 | Msa0832560:intron | 40.0% | |
| TTGTAATGTTTCAACCGCAC+AGG | - | chr5_4:5591291-5591310 | Msa0832560:intron | 40.0% | |
| GAAACTCCGTTTATTTACGC+AGG | - | chr5_4:5591318-5591337 | Msa0832560:intron | 40.0% | |
| TGGCAGACCAATGTACATAT+AGG | - | chr5_4:5591473-5591492 | Msa0832560:intron | 40.0% | |
| TAATAGTGTAGGGGAATCAC+AGG | + | chr5_4:5591666-5591685 | None:intergenic | 40.0% | |
| AGGCTTCACTAATAGTGTAG+GGG | + | chr5_4:5591675-5591694 | None:intergenic | 40.0% | |
| GAGGCTTCACTAATAGTGTA+GGG | + | chr5_4:5591676-5591695 | None:intergenic | 40.0% | |
| GTGAAGAAATCGTAGTATCG+AGG | + | chr5_4:5591695-5591714 | None:intergenic | 40.0% | |
| CATTTGTCAGTGTCCCTTAT+AGG | + | chr5_4:5591749-5591768 | None:intergenic | 40.0% | |
| CCAATCAACTGCATGTTTGA+TGG | + | chr5_4:5591777-5591796 | None:intergenic | 40.0% | |
| CCATCAAACATGCAGTTGAT+TGG | - | chr5_4:5591774-5591793 | Msa0832560:CDS | 40.0% | |
| ! | CAAGAAGCATACACGGTATA+TGG | + | chr5_4:5591881-5591900 | None:intergenic | 40.0% |
| ! | CTACTGTCAAGAAGCATACA+CGG | + | chr5_4:5591888-5591907 | None:intergenic | 40.0% |
| CTGCCTTGCAATTACAATTG+AGG | + | chr5_4:5591977-5591996 | None:intergenic | 40.0% | |
| CTCAATTGTAATTGCAAGGC+AGG | - | chr5_4:5591975-5591994 | Msa0832560:CDS | 40.0% | |
| TGTACCACTACTAACTTGAC+AGG | - | chr5_4:5592089-5592108 | Msa0832560:CDS | 40.0% | |
| TGTACCTGTCAAGTTAGTAG+TGG | + | chr5_4:5592096-5592115 | None:intergenic | 40.0% | |
| ACTACTAACTTGACAGGTAC+AGG | - | chr5_4:5592095-5592114 | Msa0832560:intron | 40.0% | |
| ACTTGACAGGTACAGGAAAT+TGG | - | chr5_4:5592102-5592121 | Msa0832560:intron | 40.0% | |
| GTACAGGAAATTGGTAAAGC+CGG | - | chr5_4:5592111-5592130 | Msa0832560:intron | 40.0% | |
| TACAGGAAATTGGTAAAGCC+GGG | - | chr5_4:5592112-5592131 | Msa0832560:intron | 40.0% | |
| ATATGATCTTGTGCAAGCCA+TGG | + | chr5_4:5592271-5592290 | None:intergenic | 40.0% | |
| GGCTTGCACAAGATCATATT+CGG | - | chr5_4:5592272-5592291 | Msa0832560:intron | 40.0% | |
| TTGCACAAGATCATATTCGG+TGG | - | chr5_4:5592275-5592294 | Msa0832560:intron | 40.0% | |
| CTAAGTGATGTGGGATCAAA+TGG | + | chr5_4:5592369-5592388 | None:intergenic | 40.0% | |
| CATTTGATCCCACATCACTT+AGG | - | chr5_4:5592367-5592386 | Msa0832560:intron | 40.0% | |
| AGAGGTGGGAAGATGAATAT+TGG | - | chr5_4:5592430-5592449 | Msa0832560:CDS | 40.0% | |
| TGATGGAGTATGGAAGCTCT+AGG | + | chr5_4:5589584-5589603 | None:intergenic | 45.0% | |
| ! | CAGGAGTCTTTCTGAGAAGA+AGG | + | chr5_4:5589640-5589659 | None:intergenic | 45.0% |
| ! | GAGAAGAGAAGCGTAAAGAG+TGG | + | chr5_4:5589663-5589682 | None:intergenic | 45.0% |
| TGCTTTCATCTCTTCCCTCA+GGG | - | chr5_4:5589709-5589728 | Msa0832560:CDS | 45.0% | |
| GCGGAAATTAACTAACCCTG+AGG | + | chr5_4:5589727-5589746 | None:intergenic | 45.0% | |
| !! | CCTAGAAAGGAGGTGTTCTT+AGG | + | chr5_4:5589853-5589872 | None:intergenic | 45.0% |
| CCTAAGAACACCTCCTTTCT+AGG | - | chr5_4:5589850-5589869 | Msa0832560:CDS | 45.0% | |
| CACCAGGATCGAATAAGTTG+TGG | + | chr5_4:5589951-5589970 | None:intergenic | 45.0% | |
| CACAACTTATTCGATCCTGG+TGG | - | chr5_4:5589949-5589968 | Msa0832560:CDS | 45.0% | |
| !! | GAAAACGGCGCATTTTAGGT+TGG | - | chr5_4:5590337-5590356 | Msa0832560:CDS | 45.0% |
| ! | CACGTGATGTTTTCACCGTT+TGG | - | chr5_4:5590417-5590436 | Msa0832560:CDS | 45.0% |
| ! | CGTGATGTTTTCACCGTTTG+GGG | - | chr5_4:5590419-5590438 | Msa0832560:CDS | 45.0% |
| ! | GTGATGTTTTCACCGTTTGG+GGG | - | chr5_4:5590420-5590439 | Msa0832560:CDS | 45.0% |
| CCCTGGTAAAATTCCAGACT+TGG | - | chr5_4:5590466-5590485 | Msa0832560:CDS | 45.0% | |
| CAGTAACCAAAAACAGGTGG+TGG | + | chr5_4:5590542-5590561 | None:intergenic | 45.0% | |
| GCACAGTAACCAAAAACAGG+TGG | + | chr5_4:5590545-5590564 | None:intergenic | 45.0% | |
| ACATACATACCAACCCCAGA+AGG | + | chr5_4:5590606-5590625 | None:intergenic | 45.0% | |
| CTGAGACTAATATACGGCCT+TGG | - | chr5_4:5591149-5591168 | Msa0832560:intron | 45.0% | |
| TCCTTCAGAAGATGTTCCCA+AGG | + | chr5_4:5591169-5591188 | None:intergenic | 45.0% | |
| AGTCGTGTTGCAGCAGTATA+AGG | + | chr5_4:5591259-5591278 | None:intergenic | 45.0% | |
| ATGTTTCAACCGCACAGGAT+TGG | - | chr5_4:5591296-5591315 | Msa0832560:intron | 45.0% | |
| CGAGGCTTCACTAATAGTGT+AGG | + | chr5_4:5591677-5591696 | None:intergenic | 45.0% | |
| CCACAGGCTCACTAAATCTT+AGG | + | chr5_4:5592001-5592020 | None:intergenic | 45.0% | |
| CCTAAGATTTAGTGAGCCTG+TGG | - | chr5_4:5591998-5592017 | Msa0832560:CDS | 45.0% | |
| GATTTAGTGAGCCTGTGGTT+TGG | - | chr5_4:5592003-5592022 | Msa0832560:CDS | 45.0% | |
| TGGCTCAAACTTGAGAAGCT+TGG | + | chr5_4:5592211-5592230 | None:intergenic | 45.0% | |
| TTTGAGCCAAGAGTTCCTGA+AGG | - | chr5_4:5592222-5592241 | Msa0832560:intron | 45.0% | |
| TGTAGAAGGTTCCCTAACCA+TGG | + | chr5_4:5592322-5592341 | None:intergenic | 45.0% | |
| AGTGATGTGGGATCAAATGG+AGG | + | chr5_4:5592366-5592385 | None:intergenic | 45.0% | |
| ! | TAATCAACCGAGTTGAGAGG+TGG | - | chr5_4:5592415-5592434 | Msa0832560:intron | 45.0% |
| ! | AATCAACCGAGTTGAGAGGT+GGG | - | chr5_4:5592416-5592435 | Msa0832560:intron | 45.0% |
| !! | TAAACTATATAAATATAATA+AGG | + | chr5_4:5591038-5591057 | None:intergenic | 5.0% |
| ! | AGAGAAGCGTAAAGAGTGGC+AGG | + | chr5_4:5589659-5589678 | None:intergenic | 50.0% |
| GAGGGAAGAGATGAAAGCAG+CGG | + | chr5_4:5589708-5589727 | None:intergenic | 50.0% | |
| CTGCTTTCATCTCTTCCCTC+AGG | - | chr5_4:5589708-5589727 | Msa0832560:CDS | 50.0% | |
| AGGTCTCAAGCCTTCACGAA+CGG | + | chr5_4:5589833-5589852 | None:intergenic | 50.0% | |
| AGGCTTGAGACCTAGAAAGG+AGG | + | chr5_4:5589863-5589882 | None:intergenic | 50.0% | |
| CAGAGGCTTGAGACCTAGAA+AGG | + | chr5_4:5589866-5589885 | None:intergenic | 50.0% | |
| !!! | AACGGCGCATTTTAGGTTGG+TGG | - | chr5_4:5590340-5590359 | Msa0832560:CDS | 50.0% |
| TGATAAGCCTGTTGTGCCCA+TGG | - | chr5_4:5590508-5590527 | Msa0832560:CDS | 50.0% | |
| GATAAGCCTGTTGTGCCCAT+GGG | - | chr5_4:5590509-5590528 | Msa0832560:CDS | 50.0% | |
| ! | TTGGTTACTGTGCTGATCGG+TGG | - | chr5_4:5590552-5590571 | Msa0832560:intron | 50.0% |
| !! | TTTTCCCTGACTGGTCCTTC+TGG | - | chr5_4:5590588-5590607 | Msa0832560:intron | 50.0% |
| ! | TTTCCCTGACTGGTCCTTCT+GGG | - | chr5_4:5590589-5590608 | Msa0832560:intron | 50.0% |
| CTGGACCGTCGACATAACAA+AGG | + | chr5_4:5590796-5590815 | None:intergenic | 50.0% | |
| TGTTATGTCGACGGTCCAGT+TGG | - | chr5_4:5590797-5590816 | Msa0832560:intron | 50.0% | |
| GCCTTGGGAACATCTTCTGA+AGG | - | chr5_4:5591165-5591184 | Msa0832560:intron | 50.0% | |
| ACGGAGTTTCCAATCCTGTG+CGG | + | chr5_4:5591308-5591327 | None:intergenic | 50.0% | |
| CATGATCAATGACGCGACCA+GGG | + | chr5_4:5592034-5592053 | None:intergenic | 50.0% | |
| ! | GGGCAAGGGTCTTTTGTAGA+AGG | + | chr5_4:5592336-5592355 | None:intergenic | 50.0% |
| GATCAAATGGAGGAGGCAAG+GGG | + | chr5_4:5592356-5592375 | None:intergenic | 50.0% | |
| GGATCAAATGGAGGAGGCAA+GGG | + | chr5_4:5592357-5592376 | None:intergenic | 50.0% | |
| GATGTGGGATCAAATGGAGG+AGG | + | chr5_4:5592363-5592382 | None:intergenic | 50.0% | |
| CATCTTCCCACCTCTCAACT+CGG | + | chr5_4:5592425-5592444 | None:intergenic | 50.0% | |
| GGAAGAGATGAAAGCAGCGG+CGG | + | chr5_4:5589705-5589724 | None:intergenic | 55.0% | |
| GGTCTCAAGCCTTCACGAAC+GGG | + | chr5_4:5589832-5589851 | None:intergenic | 55.0% | |
| CTTATTCGATCCTGGTGGCC+AGG | - | chr5_4:5589954-5589973 | Msa0832560:CDS | 55.0% | |
| TAACTCGATACCTGGCCACC+AGG | + | chr5_4:5589967-5589986 | None:intergenic | 55.0% | |
| ! | TTGGGCCCACCACCTGTTTT+TGG | - | chr5_4:5590533-5590552 | Msa0832560:intron | 55.0% |
| ! | TTCCCTGACTGGTCCTTCTG+GGG | - | chr5_4:5590590-5590609 | Msa0832560:intron | 55.0% |
| AACCCCAGAAGGACCAGTCA+GGG | + | chr5_4:5590595-5590614 | None:intergenic | 55.0% | |
| ! | AGTGAGCCTGTGGTTTGGAC+CGG | - | chr5_4:5592008-5592027 | Msa0832560:CDS | 55.0% |
| CCATGATCAATGACGCGACC+AGG | + | chr5_4:5592035-5592054 | None:intergenic | 55.0% | |
| CCTGGTCGCGTCATTGATCA+TGG | - | chr5_4:5592032-5592051 | Msa0832560:CDS | 55.0% | |
| ACGGCTCCTTCAGGAACTCT+TGG | + | chr5_4:5592231-5592250 | None:intergenic | 55.0% | |
| AAGAGTTCCTGAAGGAGCCG+TGG | - | chr5_4:5592230-5592249 | Msa0832560:intron | 55.0% | |
| TTGTGCAAGCCATGGACTCC+GGG | + | chr5_4:5592263-5592282 | None:intergenic | 55.0% | |
| CTTGTGCAAGCCATGGACTC+CGG | + | chr5_4:5592264-5592283 | None:intergenic | 55.0% | |
| GGGATCAAATGGAGGAGGCA+AGG | + | chr5_4:5592358-5592377 | None:intergenic | 55.0% | |
| TGAAAGCAGCGGCGGTGATG+AGG | + | chr5_4:5589697-5589716 | None:intergenic | 60.0% | |
| CCTGTTGTGCCCATGGGCTT+GGG | - | chr5_4:5590515-5590534 | Msa0832560:CDS | 60.0% | |
| ! | CTGTGCTGATCGGTGGACAC+AGG | - | chr5_4:5590559-5590578 | Msa0832560:intron | 60.0% |
| CAACCCCAGAAGGACCAGTC+AGG | + | chr5_4:5590596-5590615 | None:intergenic | 60.0% | |
| !! | CTGACTGGTCCTTCTGGGGT+TGG | - | chr5_4:5590594-5590613 | Msa0832560:intron | 60.0% |
| ATCAATGACGCGACCAGGGC+CGG | + | chr5_4:5592030-5592049 | None:intergenic | 60.0% | |
| ATGGAGGAGGCAAGGGGCAA+GGG | + | chr5_4:5592350-5592369 | None:intergenic | 60.0% | |
| AATGGAGGAGGCAAGGGGCA+AGG | + | chr5_4:5592351-5592370 | None:intergenic | 60.0% | |
| CAGCGGCGGTGATGAGGATG+AGG | + | chr5_4:5589691-5589710 | None:intergenic | 65.0% | |
| CGGGGTTGACCCGTTCGTGA+AGG | - | chr5_4:5589820-5589839 | Msa0832560:CDS | 65.0% | |
| GCCTGTTGTGCCCATGGGCT+TGG | - | chr5_4:5590514-5590533 | Msa0832560:CDS | 65.0% | |
| CCCAAGCCCATGGGCACAAC+AGG | + | chr5_4:5590518-5590537 | None:intergenic | 65.0% | |
| CACAGCTCCACGGCTCCTTC+AGG | + | chr5_4:5592240-5592259 | None:intergenic | 65.0% | |
| !! | GGTGGTGGGCCCAAGCCCAT+GGG | + | chr5_4:5590527-5590546 | None:intergenic | 70.0% |
| !! | AGGTGGTGGGCCCAAGCCCA+TGG | + | chr5_4:5590528-5590547 | None:intergenic | 70.0% |
| CCAGGGCCGGTCCAAACCAC+AGG | + | chr5_4:5592017-5592036 | None:intergenic | 70.0% | |
| ! | CCTGTGGTTTGGACCGGCCC+TGG | - | chr5_4:5592014-5592033 | Msa0832560:CDS | 70.0% |
| AGGAGCCGTGGAGCTGTGCC+CGG | - | chr5_4:5592242-5592261 | Msa0832560:intron | 70.0% | |
| GGACTCCGGGCACAGCTCCA+CGG | + | chr5_4:5592250-5592269 | None:intergenic | 70.0% | |
| GGAGCTGTGCCCGGAGTCCA+TGG | - | chr5_4:5592251-5592270 | Msa0832560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 5589459 | 5592689 | 5589459 | ID=Msa0832560;Name=Msa0832560 |
| chr5_4 | mRNA | 5589459 | 5592689 | 5589459 | ID=Msa0832560-mRNA-1;Parent=Msa0832560;Name=Msa0832560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=155|1|1|1|1|1|6|222|506 |
| chr5_4 | exon | 5589459 | 5590037 | 5589459 | ID=Msa0832560-mRNA-1:exon:2438;Parent=Msa0832560-mRNA-1 |
| chr5_4 | exon | 5590331 | 5590541 | 5590331 | ID=Msa0832560-mRNA-1:exon:2437;Parent=Msa0832560-mRNA-1 |
| chr5_4 | exon | 5590654 | 5590718 | 5590654 | ID=Msa0832560-mRNA-1:exon:2436;Parent=Msa0832560-mRNA-1 |
| chr5_4 | exon | 5590809 | 5591001 | 5590809 | ID=Msa0832560-mRNA-1:exon:2435;Parent=Msa0832560-mRNA-1 |
| chr5_4 | exon | 5591533 | 5592110 | 5591533 | ID=Msa0832560-mRNA-1:exon:2434;Parent=Msa0832560-mRNA-1 |
| chr5_4 | exon | 5592418 | 5592689 | 5592418 | ID=Msa0832560-mRNA-1:exon:2433;Parent=Msa0832560-mRNA-1 |
| chr5_4 | five_prime_UTR | 5592535 | 5592689 | 5592535 | ID=Msa0832560-mRNA-1:five_prime_utr;Parent=Msa0832560-mRNA-1 |
| chr5_4 | CDS | 5592418 | 5592534 | 5592418 | ID=Msa0832560-mRNA-1:cds;Parent=Msa0832560-mRNA-1 |
| chr5_4 | CDS | 5591533 | 5592110 | 5591533 | ID=Msa0832560-mRNA-1:cds;Parent=Msa0832560-mRNA-1 |
| chr5_4 | CDS | 5590809 | 5591001 | 5590809 | ID=Msa0832560-mRNA-1:cds;Parent=Msa0832560-mRNA-1 |
| chr5_4 | CDS | 5590654 | 5590718 | 5590654 | ID=Msa0832560-mRNA-1:cds;Parent=Msa0832560-mRNA-1 |
| chr5_4 | CDS | 5590331 | 5590541 | 5590331 | ID=Msa0832560-mRNA-1:cds;Parent=Msa0832560-mRNA-1 |
| chr5_4 | CDS | 5589681 | 5590037 | 5589681 | ID=Msa0832560-mRNA-1:cds;Parent=Msa0832560-mRNA-1 |
| chr5_4 | three_prime_UTR | 5589459 | 5589680 | 5589459 | ID=Msa0832560-mRNA-1:three_prime_utr;Parent=Msa0832560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
