AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0569630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569630 MtrunA17_Chr8g0384911 97.848 604 13 0 28 631 139 742 0.0 1225
Msa0569630 MtrunA17_Chr8g0384911 33.537 164 95 6 246 398 107 267 5.73e-14 75.5
Msa0569630 MtrunA17_Chr1g0193701 26.768 198 112 6 226 394 71 264 4.39e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569630 AT5G08720.1 69.180 610 162 10 28 631 129 718 0.0 815
Msa0569630 AT5G08720.1 34.483 145 87 4 246 384 97 239 8.96e-14 75.1
Msa0569630 AT4G01650.2 32.934 167 88 6 246 390 38 202 9.28e-18 82.8
Msa0569630 AT4G01650.1 33.133 166 87 6 246 389 115 278 5.41e-17 82.4
Msa0569630 AT4G01650.3 36.449 107 59 3 246 343 115 221 3.09e-14 72.8

Find 201 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTACTGATTGCTAAATT+TGG 0.126575 4_1:+71554616 None:intergenic
CAGGAAATTGTGATGCTTTC+CGG 0.135896 4_1:+71553792 None:intergenic
AAAACTTCTTTGGTTGTTAA+TGG 0.150554 4_1:-71555177 Msa0569630:CDS
TAAAAGAGTTGGACATAAAT+TGG 0.162386 4_1:-71552768 Msa0569630:CDS
TCCTTTCACTTGGCGCATTT+TGG 0.166058 4_1:-71552473 Msa0569630:three_prime_UTR
AACAGCAATTGGGGTATATT+TGG 0.184340 4_1:-71555033 Msa0569630:CDS
GCCAAAACAACTTATGAAAA+TGG 0.207859 4_1:-71556165 Msa0569630:five_prime_UTR
TAGGACTTCAGTTCAAATTA+AGG 0.215602 4_1:-71552428 Msa0569630:three_prime_UTR
CATTGAAGCTCGTGTTGTTT+TGG 0.228996 4_1:-71555856 Msa0569630:CDS
TATTCAAATTTCCACCTAAA+TGG 0.230001 4_1:+71556440 None:intergenic
TACTGATGCCATGTACTTAT+TGG 0.234172 4_1:-71552506 Msa0569630:three_prime_UTR
CATATTCAGCAACAAATTTC+AGG 0.244825 4_1:+71553594 None:intergenic
ATTTCCACCTAAATGGCTTC+TGG 0.245633 4_1:+71556447 None:intergenic
AATTTCAGCTGTGGGATTAT+AGG 0.255058 4_1:+71552310 None:intergenic
AGACTTGCATAAAACTTCTT+TGG 0.258816 4_1:-71555187 Msa0569630:CDS
CTGAAATTTGTTGCTGAATA+TGG 0.261458 4_1:-71553593 Msa0569630:CDS
TCGACTCATTCCATGGAAAA+TGG 0.265972 4_1:-71554233 Msa0569630:CDS
TAGAGTTGAAAGGAATCTTT+TGG 0.269880 4_1:-71555238 Msa0569630:CDS
GCCCATTTCCTGGAAGGATA+TGG 0.274340 4_1:-71555917 Msa0569630:CDS
TTAGGTGGAAATTTGAATAA+TGG 0.274468 4_1:-71556436 Msa0569630:five_prime_UTR
GTGAGCTTCAAGTGGTTTCT+TGG 0.276863 4_1:-71556363 Msa0569630:five_prime_UTR
GGTTTGGACACTTCAATTTC+CGG 0.285305 4_1:-71555084 Msa0569630:CDS
AACCATATCCTTCCAGGAAA+TGG 0.286044 4_1:+71555915 None:intergenic
CCGCAGATTTGATGGACTTT+TGG 0.287220 4_1:-71554962 Msa0569630:intron
AATCTTATCATATGACTCTT+TGG 0.292633 4_1:+71556019 None:intergenic
TTTATGTGAAACCAACAAAT+TGG 0.293113 4_1:-71555127 Msa0569630:CDS
CGTATTCCTTGCCCATTTCC+TGG 0.303078 4_1:-71555927 Msa0569630:CDS
TGCTCTAACCATATCCTTCC+AGG 0.304191 4_1:+71555909 None:intergenic
TTAAGAAGTTTGAGGGAAAA+TGG 0.304395 4_1:-71555502 Msa0569630:CDS
ACCGCAAACCAAAGGGTTAC+TGG 0.312478 4_1:-71553439 Msa0569630:CDS
TAGGTGGAAATTTGAATAAT+GGG 0.318321 4_1:-71556435 Msa0569630:five_prime_UTR
CACCCTTCAATAGCAAAATA+TGG 0.319903 4_1:-71552556 Msa0569630:three_prime_UTR
TTGTTGTTGATGATGTTTCA+TGG 0.321467 4_1:+71556677 None:intergenic
ATTTCATACCAAATCTTGTT+TGG 0.323525 4_1:-71556252 Msa0569630:five_prime_UTR
CCAGTGAGTTAAACAGCAAT+TGG 0.332368 4_1:-71555044 Msa0569630:CDS
ATCAACTAATTTATCTTATG+AGG 0.337577 4_1:-71555352 Msa0569630:CDS
GTTCATCTCCGCAGATTTGA+TGG 0.338069 4_1:-71554970 Msa0569630:CDS
CAATAAAGTCCGCATTCTTC+AGG 0.340923 4_1:-71554578 Msa0569630:intron
CTTATTGCACACAAGTTTGA+TGG 0.342584 4_1:+71553830 None:intergenic
GATTACCTCCAAACAAGATT+TGG 0.343316 4_1:+71556244 None:intergenic
TGCAAACCCAGAAGCCATTT+AGG 0.347976 4_1:-71556454 Msa0569630:five_prime_UTR
TAATCAAAGGTCAAGAGTTC+CGG 0.348104 4_1:-71553654 Msa0569630:CDS
CCCAGTAACCCTTTGGTTTG+CGG 0.349921 4_1:+71553438 None:intergenic
TTTCCACCTAAATGGCTTCT+GGG 0.357536 4_1:+71556448 None:intergenic
TTTAAGGGCATAATCACTTC+AGG 0.364319 4_1:-71556195 Msa0569630:five_prime_UTR
TATGCAAGTCTTCTTCTGGC+TGG 0.365546 4_1:+71555199 None:intergenic
GTGTAAAGGCCTGCTTTATA+TGG 0.365800 4_1:-71554334 Msa0569630:CDS
TCCTTGCCTTGAGAGATAGA+AGG 0.366056 4_1:+71552929 None:intergenic
AGCTATGGTTAATTAATTGA+TGG 0.367827 4_1:+71556222 None:intergenic
CTTTGATTTCGTATAGAACT+TGG 0.371993 4_1:+71556062 None:intergenic
GGACAATCTTGAAAATTTGC+AGG 0.376858 4_1:-71553417 Msa0569630:CDS
AGGACTTCAGTTCAAATTAA+GGG 0.380996 4_1:-71552427 Msa0569630:three_prime_UTR
CTTTGATATTGCACGGGCGC+TGG 0.383854 4_1:-71552983 Msa0569630:CDS
GTATTCTGCTCACAAACTTC+AGG 0.385344 4_1:+71553773 None:intergenic
GGAAAATGGTCTGTAAAATC+TGG 0.393706 4_1:-71555488 Msa0569630:CDS
CAGAAAGATTGCAACCATAA+TGG 0.396004 4_1:-71553483 Msa0569630:CDS
AGCTAGAGAGAGGTCCATTA+TGG 0.400943 4_1:+71553469 None:intergenic
CTGACCAGGTGCCAATTTGT+TGG 0.402562 4_1:+71555116 None:intergenic
CAGTGAGTTAAACAGCAATT+GGG 0.406091 4_1:-71555043 Msa0569630:CDS
CAACAAATTGGCACCTGGTC+AGG 0.407193 4_1:-71555115 Msa0569630:CDS
TGCCTATGAGGAAGCAGCTT+CGG 0.407535 4_1:-71553556 Msa0569630:CDS
ATCCTTTCCAAGAAAATAGC+TGG 0.407564 4_1:+71555303 None:intergenic
AAGGAAGAGCGTAGAGAAAG+TGG 0.409251 4_1:+71556562 None:intergenic
ATGCTGATATTAACTCCGTT+TGG 0.413462 4_1:-71556306 Msa0569630:five_prime_UTR
TATCTACATCTGCTGATTCT+CGG 0.414323 4_1:+71552854 None:intergenic
GTTCCTTTCTGAAGCTATCA+TGG 0.414791 4_1:-71554139 Msa0569630:CDS
ATGCAAGTCTTCTTCTGGCT+GGG 0.420729 4_1:+71555200 None:intergenic
AATCAAAGGTCAAGAGTTCC+GGG 0.421005 4_1:-71553653 Msa0569630:CDS
AAAAGAGTTGGACATAAATT+GGG 0.422170 4_1:-71552767 Msa0569630:CDS
GAACAACAAATTATATCATC+TGG 0.426503 4_1:-71553743 Msa0569630:CDS
TCGTTCAAATGACTTTCTAC+TGG 0.427969 4_1:+71553162 None:intergenic
TTAATTTGAACTGAAGTCCT+AGG 0.430865 4_1:+71552430 None:intergenic
GATTTCAAAGGGCAATGTAT+TGG 0.434318 4_1:-71555881 Msa0569630:CDS
AAATGATGGTTTGGAATGTA+AGG 0.434736 4_1:+71556543 None:intergenic
GGAGACTTTAAGAAGTTTGA+GGG 0.435260 4_1:-71555509 Msa0569630:CDS
AAGCTCCTGTTCGTGATGTA+TGG 0.435936 4_1:-71554800 Msa0569630:CDS
TCAAGTGTTTATCATATAAG+TGG 0.440789 4_1:+71556108 None:intergenic
TAAGTAGATTTCAGAGATGC+TGG 0.441100 4_1:-71553207 Msa0569630:CDS
AGAATGTGCTTACAGAATTG+AGG 0.448020 4_1:+71555820 None:intergenic
ACCATATCCTTCCAGGAAAT+GGG 0.452989 4_1:+71555916 None:intergenic
TTTCTACTGGGCATAAATGA+TGG 0.458102 4_1:+71553175 None:intergenic
CTTGGAAAGGATTGTCAGAT+CGG 0.461197 4_1:-71555292 Msa0569630:CDS
TAAGTACAACTATGTGTTGA+TGG 0.461654 4_1:-71552700 Msa0569630:three_prime_UTR
AGATTGTCCCAGTAACCCTT+TGG 0.463671 4_1:+71553431 None:intergenic
TGAGTGTGAGTGTGTGAAGA+AGG 0.463920 4_1:+71556641 None:intergenic
CCAATTGCTGTTTAACTCAC+TGG 0.464061 4_1:+71555044 None:intergenic
TGGTCAGGATAAAGAAGGTT+TGG 0.466478 4_1:-71555100 Msa0569630:CDS
GAGACAGACTATTTAATCCT+AGG 0.471771 4_1:-71552447 Msa0569630:three_prime_UTR
TTCTGAAGCTATCATGGAAG+AGG 0.480831 4_1:-71554133 Msa0569630:intron
TGGAGACTTTAAGAAGTTTG+AGG 0.481726 4_1:-71555510 Msa0569630:CDS
TTGCACGGGCGCTGGAAAAG+TGG 0.485341 4_1:-71552975 Msa0569630:CDS
TGCACGGGCGCTGGAAAAGT+GGG 0.485874 4_1:-71552974 Msa0569630:CDS
TTGGAGGGAACGGAGAGTTA+AGG 0.486180 4_1:-71556344 Msa0569630:five_prime_UTR
AGCCGAAGCTGCTTCCTCAT+AGG 0.486988 4_1:+71553554 None:intergenic
TACAAATACCGCAAACCAAA+GGG 0.487175 4_1:-71553446 Msa0569630:CDS
GGAAGACGCAGGCAATGAAC+CGG 0.492642 4_1:+71555065 None:intergenic
TAAGAGACTACGTTGAGAAC+CGG 0.494267 4_1:-71553811 Msa0569630:CDS
CCGCAAACCAAAGGGTTACT+GGG 0.494866 4_1:-71553438 Msa0569630:CDS
ACATTCCATACATCACGAAC+AGG 0.495980 4_1:+71554795 None:intergenic
TCCTGTGAATCTACGAGCCT+TGG 0.496391 4_1:-71555265 Msa0569630:CDS
TCCAAAATGCGCCAAGTGAA+AGG 0.498924 4_1:+71552472 None:intergenic
ATATAAATATATTTATACAT+TGG 0.500183 4_1:-71552725 Msa0569630:three_prime_UTR
CAGGCCGCTTTGATATTGCA+CGG 0.501731 4_1:-71552990 Msa0569630:CDS
CAAATTATATCATCTGGCTC+TGG 0.502999 4_1:-71553737 Msa0569630:CDS
TTCCTTGCCCATTTCCTGGA+AGG 0.505510 4_1:-71555923 Msa0569630:CDS
ATAGCTGGGAAATTGAATCT+TGG 0.507663 4_1:+71555318 None:intergenic
TCATACCAAATCTTGTTTGG+AGG 0.510529 4_1:-71556249 Msa0569630:five_prime_UTR
AGTGCGAGCATTGTGGCCAC+TGG 0.511613 4_1:+71556720 None:intergenic
TGCAAGTCTTCTTCTGGCTG+GGG 0.517701 4_1:+71555201 None:intergenic
CGTTCAAATGACTTTCTACT+GGG 0.520909 4_1:+71553163 None:intergenic
GCCAAGGCTCGTAGATTCAC+AGG 0.521303 4_1:+71555264 None:intergenic
CTATACGAAATCAAAGTCAT+TGG 0.522063 4_1:-71556055 Msa0569630:five_prime_UTR
AAGTGGTTTCTTGGAGGGAA+CGG 0.523263 4_1:-71556354 Msa0569630:five_prime_UTR
CAATAGCAAAATATGGCTGC+TGG 0.524984 4_1:-71552549 Msa0569630:three_prime_UTR
ATGCCCTTAAAATGAAGCTA+TGG 0.529700 4_1:+71556207 None:intergenic
AGAAAGTCATTTGAACGAGT+TGG 0.530001 4_1:-71553157 Msa0569630:intron
AGGAAGCAGCTTCGGCTGCA+TGG 0.532690 4_1:-71553548 Msa0569630:CDS
TCAATATCCCTCTGTAGTCC+CGG 0.534477 4_1:+71553635 None:intergenic
AGCTTCAAGTGGTTTCTTGG+AGG 0.534532 4_1:-71556360 Msa0569630:five_prime_UTR
GGGTTTGCACTGTGTTGTTG+AGG 0.536639 4_1:+71556468 None:intergenic
TGAGAAGGCTATAACTCGCA+TGG 0.539683 4_1:-71553513 Msa0569630:CDS
TTCAAAGCTCATCTAATCAA+AGG 0.543340 4_1:-71553667 Msa0569630:CDS
AAACCTTCTTTATCCTGACC+AGG 0.545502 4_1:+71555102 None:intergenic
GCTTCAAGTGGTTTCTTGGA+GGG 0.545578 4_1:-71556359 Msa0569630:five_prime_UTR
GCATACAGAACTAAAAGAGT+TGG 0.545618 4_1:-71552779 Msa0569630:CDS
TTCTCGCCTTCTATCTCTCA+AGG 0.546788 4_1:-71552935 Msa0569630:CDS
AAGTAGATTTCAGAGATGCT+GGG 0.547739 4_1:-71553206 Msa0569630:CDS
AGGCCGCTTTGATATTGCAC+GGG 0.548501 4_1:-71552989 Msa0569630:CDS
TTCTACTGGGCATAAATGAT+GGG 0.548996 4_1:+71553176 None:intergenic
ATCAGTTAAAGCATTCCAAA+CGG 0.551914 4_1:+71556291 None:intergenic
GGACTTCAGTTCAAATTAAG+GGG 0.555128 4_1:-71552426 Msa0569630:three_prime_UTR
AATATGCAGGAAGGGTGTAA+AGG 0.555160 4_1:-71554348 Msa0569630:intron
GGTGACTTCGACTCATTCCA+TGG 0.555479 4_1:-71554240 Msa0569630:CDS
TCTTGAAAATTTGCAGGACG+AGG 0.558044 4_1:-71553411 Msa0569630:intron
GTTTCATGGCATGTTGGCAT+AGG 0.558640 4_1:+71556691 None:intergenic
AGTCATACAATTTCAGCTGT+GGG 0.559385 4_1:+71552302 None:intergenic
AGGAAGGGTTTATGCCTATG+AGG 0.559853 4_1:-71553568 Msa0569630:CDS
AGGAAGAGCGTAGAGAAAGT+GGG 0.562581 4_1:+71556563 None:intergenic
CCTTTCAACTCTATATGCCA+AGG 0.562617 4_1:+71555248 None:intergenic
GCACCTGGTCAGGATAAAGA+AGG 0.563894 4_1:-71555105 Msa0569630:CDS
TAGAGCAAAGAGGATTTCAA+AGG 0.565114 4_1:-71555893 Msa0569630:CDS
TTGCTGAATATGGTCAGGAA+GGG 0.565420 4_1:-71553583 Msa0569630:CDS
GATGATGTTTCATGGCATGT+TGG 0.566768 4_1:+71556685 None:intergenic
GTTGCTGAATATGGTCAGGA+AGG 0.566894 4_1:-71553584 Msa0569630:CDS
ATTTGTTGCTGAATATGGTC+AGG 0.570102 4_1:-71553588 Msa0569630:CDS
TTTCCCTCGCAATTTGCACA+AGG 0.570479 4_1:-71556503 Msa0569630:five_prime_UTR
TAGCAAAATATGGCTGCTGG+TGG 0.574174 4_1:-71552546 Msa0569630:three_prime_UTR
CTTCCATGATAGCTTCAGAA+AGG 0.579834 4_1:+71554136 None:intergenic
ACTAGACAGGACAACAACCT+TGG 0.581704 4_1:-71552898 Msa0569630:CDS
TCCTTTCCAAGAAAATAGCT+GGG 0.581774 4_1:+71555304 None:intergenic
AGAGCAAAGAGGATTTCAAA+GGG 0.581778 4_1:-71555892 Msa0569630:CDS
GTGCTAAGCAAGAATGTACA+AGG 0.582199 4_1:+71552661 None:intergenic
CATGAAGCACCATATAAAGC+AGG 0.584729 4_1:+71554325 None:intergenic
TATTGCTATGACAGTTTGCG+TGG 0.584981 4_1:-71552344 Msa0569630:three_prime_UTR
GCCTTCTATCTCTCAAGGCA+AGG 0.588537 4_1:-71552930 Msa0569630:CDS
TTCCCTCGCAATTTGCACAA+GGG 0.591926 4_1:-71556502 Msa0569630:five_prime_UTR
TTACAAATACCGCAAACCAA+AGG 0.593624 4_1:-71553447 Msa0569630:CDS
AAAGTGGGGTGGACTTCATG+AGG 0.593784 4_1:-71552959 Msa0569630:CDS
GAGTCATACAATTTCAGCTG+TGG 0.594592 4_1:+71552301 None:intergenic
TGCCCTTGTGCAAATTGCGA+GGG 0.594902 4_1:+71556500 None:intergenic
ATCCTTCCAGGAAATGGGCA+AGG 0.601199 4_1:+71555921 None:intergenic
AAAATTTACCAATAAGTACA+TGG 0.603191 4_1:+71552498 None:intergenic
CTACAACACAAGGCTTGTCA+AGG 0.605033 4_1:+71554998 None:intergenic
AGTAGATTTCAGAGATGCTG+GGG 0.605132 4_1:-71553205 Msa0569630:CDS
GCTTCGGCTGCATGGAAGAG+TGG 0.605805 4_1:-71553540 Msa0569630:CDS
GAGAAGGCTATAACTCGCAT+GGG 0.607086 4_1:-71553512 Msa0569630:CDS
AGTGAGTTAAACAGCAATTG+GGG 0.607282 4_1:-71555042 Msa0569630:CDS
AGCAAAATATGGCTGCTGGT+GGG 0.608587 4_1:-71552545 Msa0569630:three_prime_UTR
TTAAGTTGCTTATACAAACA+TGG 0.609473 4_1:-71556085 Msa0569630:five_prime_UTR
TGTGTGTCTTGAGAAATATA+AGG 0.610890 4_1:+71552808 None:intergenic
CCTTGGCATATAGAGTTGAA+AGG 0.613041 4_1:-71555248 Msa0569630:CDS
AAGAGTTCCGGGACTACAGA+GGG 0.615046 4_1:-71553642 Msa0569630:CDS
TGGAAGAGTGGATATTGAGA+AGG 0.615915 4_1:-71553528 Msa0569630:CDS
AGGATATGGTTAGAGCAAAG+AGG 0.617625 4_1:-71555903 Msa0569630:CDS
ATGCCCTTGTGCAAATTGCG+AGG 0.617760 4_1:+71556499 None:intergenic
CGGGCGCTGGAAAAGTGGGG+TGG 0.622705 4_1:-71552970 Msa0569630:CDS
GAAACCAACAAATTGGCACC+TGG 0.623841 4_1:-71555120 Msa0569630:CDS
GCACGGGCGCTGGAAAAGTG+GGG 0.634461 4_1:-71552973 Msa0569630:CDS
TTTCATGTGAAGGAAAATGG+AGG 0.635353 4_1:-71554858 Msa0569630:intron
AAGGCTATAACTCGCATGGG+TGG 0.635453 4_1:-71553509 Msa0569630:CDS
GGTTAACTGTGAGCTTCAAG+TGG 0.636625 4_1:-71556371 Msa0569630:five_prime_UTR
TAAGCAAGAATGTACAAGGA+AGG 0.637170 4_1:+71552665 None:intergenic
TTTCTCAAGACACACACAAG+TGG 0.642360 4_1:-71552801 Msa0569630:CDS
CAAGAGTTCCGGGACTACAG+AGG 0.649469 4_1:-71553643 Msa0569630:CDS
AGAAGAAGAAAGTGACCGTG+AGG 0.650924 4_1:-71556392 Msa0569630:five_prime_UTR
GGTATTTGTAAGCTAGAGAG+AGG 0.653000 4_1:+71553459 None:intergenic
GGTCTGTAAAATCTGGAACA+AGG 0.653193 4_1:-71555481 Msa0569630:intron
AGAAGAAGAAGGTCTGCAAG+TGG 0.655363 4_1:+71556606 None:intergenic
CCAAAAGTCCATCAAATCTG+CGG 0.656121 4_1:+71554962 None:intergenic
GCTACAGAGTGCGAGCATTG+TGG 0.656834 4_1:+71556713 None:intergenic
TATGGTGCTTCATGCTCGTG+TGG 0.656840 4_1:-71554316 Msa0569630:CDS
GATTTGGTATGAAATCAGCT+AGG 0.657566 4_1:+71556260 None:intergenic
ACAGGACAACAACCTTGGCA+AGG 0.658251 4_1:-71552893 Msa0569630:CDS
TGAACTTCATCTACAACACA+AGG 0.661750 4_1:+71554988 None:intergenic
GAAGCTCACAGTTAACCTCA+CGG 0.685357 4_1:+71556377 None:intergenic
TTTAACTCACTGGAAGACGC+AGG 0.696438 4_1:+71555054 None:intergenic
AAACCCAGAAGCCATTTAGG+TGG 0.697351 4_1:-71556451 Msa0569630:five_prime_UTR
TGGTCCGTACCTGAAGAATG+CGG 0.706706 4_1:+71554569 None:intergenic
CACACTGCTAAAGTACTCTG+TGG 0.709210 4_1:-71554184 Msa0569630:CDS
GCGCCCGTGCAATATCAAAG+CGG 0.728813 4_1:+71552986 None:intergenic
GTAGATTTCAGAGATGCTGG+GGG 0.734657 4_1:-71553204 Msa0569630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTCAAAAAAAAAAAAA+AGG + chr4_1:71555041-71555060 None:intergenic 10.0%
!!! ATTTACTTTCTTTTTATAAA+AGG + chr4_1:71555076-71555095 None:intergenic 10.0%
!!! ATTTTGTATTATTACAAAGT+TGG + chr4_1:71553450-71553469 None:intergenic 15.0%
!! TAGTTTATTTATATCATTCA+TGG + chr4_1:71553617-71553636 None:intergenic 15.0%
!! CACATGAAAATATTTATTAT+TGG + chr4_1:71554164-71554183 None:intergenic 15.0%
!!! TAATAAATATTTTCATGTGA+AGG - chr4_1:71554165-71554184 Msa0569630:CDS 15.0%
!! AAAAAAAAAAAAAGGAGATA+TGG + chr4_1:71555033-71555052 None:intergenic 15.0%
!!! TCTTATTACCATTTTAATTT+TGG - chr4_1:71555991-71556010 Msa0569630:CDS 15.0%
!!! CTTATTACCATTTTAATTTT+GGG - chr4_1:71555992-71556011 Msa0569630:CDS 15.0%
!! ATAAATGAGCAAAAAAAAAA+GGG - chr4_1:71556647-71556666 Msa0569630:five_prime_UTR 15.0%
!!! AAATTCTTTTTTAATGCTTC+AGG - chr4_1:71553466-71553485 Msa0569630:CDS 20.0%
!!! GTATTAACTTTAAGAAACAT+AGG + chr4_1:71553583-71553602 None:intergenic 20.0%
!! ATCAACTAATTTATCTTATG+AGG - chr4_1:71553681-71553700 Msa0569630:CDS 20.0%
!! TCTATACTAGATTGTTTATT+AGG - chr4_1:71554101-71554120 Msa0569630:intron 20.0%
!!! ACAAATGTTTTTTTGTCAAT+TGG + chr4_1:71554385-71554404 None:intergenic 20.0%
!!! AATATGTATTTTACTAACAG+TGG + chr4_1:71554593-71554612 None:intergenic 20.0%
!!! ATACAAGTTCAAACTTTTAT+CGG + chr4_1:71554637-71554656 None:intergenic 20.0%
!! GTTTGTCTATAAATATGATT+TGG - chr4_1:71554922-71554941 Msa0569630:intron 20.0%
!!! TCTTTTTATAAAAGGAGATA+TGG + chr4_1:71555068-71555087 None:intergenic 20.0%
!!! AAGTAAATAACTGTTTTTGT+TGG - chr4_1:71555088-71555107 Msa0569630:CDS 20.0%
!! AAAATATTGAAGTTGAGAAA+GGG + chr4_1:71555916-71555935 None:intergenic 20.0%
!! AAAATTTACCAATAAGTACA+TGG + chr4_1:71556538-71556557 None:intergenic 20.0%
!! CATAAATGAGCAAAAAAAAA+AGG - chr4_1:71556646-71556665 Msa0569630:five_prime_UTR 20.0%
! CAAAGATAAAAATGATGGTT+TGG + chr4_1:71552502-71552521 None:intergenic 25.0%
! AGACTCAAAGATAAAAATGA+TGG + chr4_1:71552507-71552526 None:intergenic 25.0%
! TATTCAAATTTCCACCTAAA+TGG + chr4_1:71552596-71552615 None:intergenic 25.0%
! TTAGGTGGAAATTTGAATAA+TGG - chr4_1:71552597-71552616 Msa0569630:three_prime_UTR 25.0%
! TAGGTGGAAATTTGAATAAT+GGG - chr4_1:71552598-71552617 Msa0569630:three_prime_UTR 25.0%
! ATTTCATACCAAATCTTGTT+TGG - chr4_1:71552781-71552800 Msa0569630:CDS 25.0%
! AGCTATGGTTAATTAATTGA+TGG + chr4_1:71552814-71552833 None:intergenic 25.0%
!! TTAACCATAGCTTCATTTTA+AGG - chr4_1:71552822-71552841 Msa0569630:CDS 25.0%
!! TAACCATAGCTTCATTTTAA+GGG - chr4_1:71552823-71552842 Msa0569630:CDS 25.0%
!! ACCATTTTCATAAGTTGTTT+TGG + chr4_1:71552872-71552891 None:intergenic 25.0%
! TCAAGTGTTTATCATATAAG+TGG + chr4_1:71552928-71552947 None:intergenic 25.0%
!! TTAAGTTGCTTATACAAACA+TGG - chr4_1:71552948-71552967 Msa0569630:CDS 25.0%
! AATCTTATCATATGACTCTT+TGG + chr4_1:71553017-71553036 None:intergenic 25.0%
! TTTAAAAACTGTATGAACAG+AGG - chr4_1:71553383-71553402 Msa0569630:intron 25.0%
! TTAAAAACTGTATGAACAGA+GGG - chr4_1:71553384-71553403 Msa0569630:intron 25.0%
!!! TTTTTTAATGCTTCAGGAAT+GGG - chr4_1:71553472-71553491 Msa0569630:CDS 25.0%
! AAAACTTCTTTGGTTGTTAA+TGG - chr4_1:71553856-71553875 Msa0569630:intron 25.0%
! TCTTCTGTCAAAAAGATAAA+TGG - chr4_1:71553880-71553899 Msa0569630:intron 25.0%
! TTTATGTGAAACCAACAAAT+TGG - chr4_1:71553906-71553925 Msa0569630:intron 25.0%
! GTTGCCTTAATTCTTAAAAT+GGG - chr4_1:71554123-71554142 Msa0569630:intron 25.0%
!!! ACATCCCATTTTAAGAATTA+AGG + chr4_1:71554130-71554149 None:intergenic 25.0%
!! TATTTTCATGTGAAGGAAAA+TGG - chr4_1:71554172-71554191 Msa0569630:CDS 25.0%
! TCAATATCTCTAGTGTAAAA+AGG + chr4_1:71554308-71554327 None:intergenic 25.0%
!! ATCTTACTGATTGCTAAATT+TGG + chr4_1:71554420-71554439 None:intergenic 25.0%
! TCTTGATTAAATCAATATGC+AGG - chr4_1:71554672-71554691 Msa0569630:intron 25.0%
! ATTAAATCAATATGCAGGAA+GGG - chr4_1:71554677-71554696 Msa0569630:intron 25.0%
!!! ATAACTGTTTTTGTTGGTAT+TGG - chr4_1:71555094-71555113 Msa0569630:CDS 25.0%
!! TATTGGATACAATCTTTTGA+GGG - chr4_1:71555111-71555130 Msa0569630:CDS 25.0%
! TAAATCGATCCACATTTAAA+TGG - chr4_1:71555134-71555153 Msa0569630:CDS 25.0%
!! TGTTATAAGTTCTTTGTTTC+AGG - chr4_1:71555163-71555182 Msa0569630:CDS 25.0%
! GAACAACAAATTATATCATC+TGG - chr4_1:71555290-71555309 Msa0569630:CDS 25.0%
!!! TTAACTTTAGCTTGTTATTC+TGG + chr4_1:71555686-71555705 None:intergenic 25.0%
! CAAAATATTGAAGTTGAGAA+AGG + chr4_1:71555917-71555936 None:intergenic 25.0%
! TAAAAGAGTTGGACATAAAT+TGG - chr4_1:71556265-71556284 Msa0569630:five_prime_UTR 25.0%
! AAAAGAGTTGGACATAAATT+GGG - chr4_1:71556266-71556285 Msa0569630:five_prime_UTR 25.0%
! CAAATCAAGATTGAAAAAAG+AGG + chr4_1:71556412-71556431 None:intergenic 25.0%
!!! CTCTTTTTTCAATCTTGATT+TGG - chr4_1:71556410-71556429 Msa0569630:five_prime_UTR 25.0%
!! TAAATTTTCTTCCTTTCACT+TGG - chr4_1:71556550-71556569 Msa0569630:five_prime_UTR 25.0%
!! TTGTTGTTGATGATGTTTCA+TGG + chr4_1:71552359-71552378 None:intergenic 30.0%
! AAATGATGGTTTGGAATGTA+AGG + chr4_1:71552493-71552512 None:intergenic 30.0%
! ATCAGTTAAAGCATTCCAAA+CGG + chr4_1:71552745-71552764 None:intergenic 30.0%
GCCAAAACAACTTATGAAAA+TGG - chr4_1:71552868-71552887 Msa0569630:CDS 30.0%
! CTTTGATTTCGTATAGAACT+TGG + chr4_1:71552974-71552993 None:intergenic 30.0%
CTATACGAAATCAAAGTCAT+TGG - chr4_1:71552978-71552997 Msa0569630:CDS 30.0%
!!! AGAGTTGTTTTTGTTGTTAG+TGG - chr4_1:71553082-71553101 Msa0569630:intron 30.0%
!!! GAGTTGTTTTTGTTGTTAGT+GGG - chr4_1:71553083-71553102 Msa0569630:intron 30.0%
! ATGATTTTGTTACTGCATAC+TGG - chr4_1:71553263-71553282 Msa0569630:intron 30.0%
!!! CTTTTTTAATGCTTCAGGAA+TGG - chr4_1:71553471-71553490 Msa0569630:CDS 30.0%
!! TCGAGAACTTCATTTTTCAA+TGG - chr4_1:71553496-71553515 Msa0569630:CDS 30.0%
!! CTTCATTTTTCAATGGTTGA+TGG - chr4_1:71553503-71553522 Msa0569630:CDS 30.0%
TTAAGAAGTTTGAGGGAAAA+TGG - chr4_1:71553531-71553550 Msa0569630:CDS 30.0%
! TAGAGTTGAAAGGAATCTTT+TGG - chr4_1:71553795-71553814 Msa0569630:CDS 30.0%
! AGAGTTGAAAGGAATCTTTT+GGG - chr4_1:71553796-71553815 Msa0569630:CDS 30.0%
AGACTTGCATAAAACTTCTT+TGG - chr4_1:71553846-71553865 Msa0569630:CDS 30.0%
GGTTGCCTTAATTCTTAAAA+TGG - chr4_1:71554122-71554141 Msa0569630:intron 30.0%
! GACAAAAAAACATTTGTTGC+AGG - chr4_1:71554388-71554407 Msa0569630:intron 30.0%
!! TTACTAACAGTGGATTTTGA+TGG + chr4_1:71554583-71554602 None:intergenic 30.0%
GATTAAATCAATATGCAGGA+AGG - chr4_1:71554676-71554695 Msa0569630:intron 30.0%
! TTGTTTTCACTCGAAATGTT+TGG - chr4_1:71554977-71554996 Msa0569630:CDS 30.0%
TGTCTTGCTTCAACTTATAT+GGG + chr4_1:71555003-71555022 None:intergenic 30.0%
! GTATTGGATACAATCTTTTG+AGG - chr4_1:71555110-71555129 Msa0569630:CDS 30.0%
ACATTTCAGCCATTTAAATG+TGG + chr4_1:71555146-71555165 None:intergenic 30.0%
TTCAAAGCTCATCTAATCAA+AGG - chr4_1:71555366-71555385 Msa0569630:intron 30.0%
! ATTTCAGGAGTTCAGATTTT+AGG + chr4_1:71555427-71555446 None:intergenic 30.0%
CATATTCAGCAACAAATTTC+AGG + chr4_1:71555442-71555461 None:intergenic 30.0%
!! CTGAAATTTGTTGCTGAATA+TGG - chr4_1:71555440-71555459 Msa0569630:intron 30.0%
AATAAGATACATATGCCATG+TGG + chr4_1:71555978-71555997 None:intergenic 30.0%
TGCTAAGCCCAAAATTAAAA+TGG + chr4_1:71556002-71556021 None:intergenic 30.0%
!! AGATAATGGAATTAACTTGC+AGG - chr4_1:71556024-71556043 Msa0569630:CDS 30.0%
TGTGTGTCTTGAGAAATATA+AGG + chr4_1:71556228-71556247 None:intergenic 30.0%
TAAGTACAACTATGTGTTGA+TGG - chr4_1:71556333-71556352 Msa0569630:five_prime_UTR 30.0%
!!! AGCCATATTTTGCTATTGAA+GGG + chr4_1:71556482-71556501 None:intergenic 30.0%
! TTAATTTGAACTGAAGTCCT+AGG + chr4_1:71556606-71556625 None:intergenic 30.0%
TAGGACTTCAGTTCAAATTA+AGG - chr4_1:71556605-71556624 Msa0569630:five_prime_UTR 30.0%
AGGACTTCAGTTCAAATTAA+GGG - chr4_1:71556606-71556625 Msa0569630:five_prime_UTR 30.0%
ATGAGCAAAAAAAAAAGGGA+AGG - chr4_1:71556651-71556670 Msa0569630:five_prime_UTR 30.0%
AACAACAAACCAAAAACCAG+TGG - chr4_1:71552297-71552316 Msa0569630:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr4_1:71552624-71552643 None:intergenic 35.0%
ATGCTGATATTAACTCCGTT+TGG - chr4_1:71552727-71552746 Msa0569630:three_prime_UTR 35.0%
! GATTTGGTATGAAATCAGCT+AGG + chr4_1:71552776-71552795 None:intergenic 35.0%
! TCATACCAAATCTTGTTTGG+AGG - chr4_1:71552784-71552803 Msa0569630:CDS 35.0%
GATTACCTCCAAACAAGATT+TGG + chr4_1:71552792-71552811 None:intergenic 35.0%
ATGCCCTTAAAATGAAGCTA+TGG + chr4_1:71552829-71552848 None:intergenic 35.0%
! TTTAAGGGCATAATCACTTC+AGG - chr4_1:71552838-71552857 Msa0569630:CDS 35.0%
TAGAGCAAAGAGGATTTCAA+AGG - chr4_1:71553140-71553159 Msa0569630:intron 35.0%
AGAGCAAAGAGGATTTCAAA+GGG - chr4_1:71553141-71553160 Msa0569630:intron 35.0%
GATTTCAAAGGGCAATGTAT+TGG - chr4_1:71553152-71553171 Msa0569630:intron 35.0%
AGAATGTGCTTACAGAATTG+AGG + chr4_1:71553216-71553235 None:intergenic 35.0%
AAGTGGATAACATTGAAGAG+TGG - chr4_1:71553318-71553337 Msa0569630:intron 35.0%
! TGGAGACTTTAAGAAGTTTG+AGG - chr4_1:71553523-71553542 Msa0569630:CDS 35.0%
! GGAGACTTTAAGAAGTTTGA+GGG - chr4_1:71553524-71553543 Msa0569630:CDS 35.0%
GGAAAATGGTCTGTAAAATC+TGG - chr4_1:71553545-71553564 Msa0569630:CDS 35.0%
ATAGCTGGGAAATTGAATCT+TGG + chr4_1:71553718-71553737 None:intergenic 35.0%
!! CAATTTCCCAGCTATTTTCT+TGG - chr4_1:71553723-71553742 Msa0569630:CDS 35.0%
TCCTTTCCAAGAAAATAGCT+GGG + chr4_1:71553732-71553751 None:intergenic 35.0%
ATCCTTTCCAAGAAAATAGC+TGG + chr4_1:71553733-71553752 None:intergenic 35.0%
! GAGTTGAAAGGAATCTTTTG+GGG - chr4_1:71553797-71553816 Msa0569630:CDS 35.0%
! GTTTTATGCAAGTCTTCTTC+TGG + chr4_1:71553841-71553860 None:intergenic 35.0%
CAGTGAGTTAAACAGCAATT+GGG - chr4_1:71553990-71554009 Msa0569630:intron 35.0%
AGTGAGTTAAACAGCAATTG+GGG - chr4_1:71553991-71554010 Msa0569630:intron 35.0%
AACAGCAATTGGGGTATATT+TGG - chr4_1:71554000-71554019 Msa0569630:intron 35.0%
TGAACTTCATCTACAACACA+AGG + chr4_1:71554048-71554067 None:intergenic 35.0%
TTTCATGTGAAGGAAAATGG+AGG - chr4_1:71554175-71554194 Msa0569630:CDS 35.0%
GCATGCTGTAAAAGATTTCT+AGG - chr4_1:71554331-71554350 Msa0569630:CDS 35.0%
!! ACTCTGGTTCATTTTCAGAT+TGG + chr4_1:71554487-71554506 None:intergenic 35.0%
AGATTCTCTTGTTCTAACTC+TGG + chr4_1:71554503-71554522 None:intergenic 35.0%
! TTTTATCGGCAATTGTGCTT+AGG + chr4_1:71554623-71554642 None:intergenic 35.0%
!!! ACAAGAGATCAGTTTTGAAC+AGG - chr4_1:71554765-71554784 Msa0569630:intron 35.0%
!! AAATGGACTTTTGAGCAACT+AGG - chr4_1:71554817-71554836 Msa0569630:CDS 35.0%
GTGTCTTGCTTCAACTTATA+TGG + chr4_1:71555004-71555023 None:intergenic 35.0%
CTTATTGCACACAAGTTTGA+TGG + chr4_1:71555206-71555225 None:intergenic 35.0%
! CAAATTATATCATCTGGCTC+TGG - chr4_1:71555296-71555315 Msa0569630:CDS 35.0%
TAATCAAAGGTCAAGAGTTC+CGG - chr4_1:71555379-71555398 Msa0569630:intron 35.0%
! ATTTGTTGCTGAATATGGTC+AGG - chr4_1:71555445-71555464 Msa0569630:intron 35.0%
CAGAAAGATTGCAACCATAA+TGG - chr4_1:71555550-71555569 Msa0569630:intron 35.0%
TTACAAATACCGCAAACCAA+AGG - chr4_1:71555586-71555605 Msa0569630:intron 35.0%
TACAAATACCGCAAACCAAA+GGG - chr4_1:71555587-71555606 Msa0569630:intron 35.0%
GGACAATCTTGAAAATTTGC+AGG - chr4_1:71555616-71555635 Msa0569630:intron 35.0%
TGGCAAGTAGCAACTAAAAA+TGG + chr4_1:71555666-71555685 None:intergenic 35.0%
AATTGACGATGACATGATGA+AGG - chr4_1:71555704-71555723 Msa0569630:intron 35.0%
ACATGTGTAACATCGTTTAC+AGG - chr4_1:71555769-71555788 Msa0569630:intron 35.0%
TAAGTAGATTTCAGAGATGC+TGG - chr4_1:71555826-71555845 Msa0569630:intron 35.0%
AAGTAGATTTCAGAGATGCT+GGG - chr4_1:71555827-71555846 Msa0569630:intron 35.0%
TTCTACTGGGCATAAATGAT+GGG + chr4_1:71555860-71555879 None:intergenic 35.0%
TTTCTACTGGGCATAAATGA+TGG + chr4_1:71555861-71555880 None:intergenic 35.0%
CGTTCAAATGACTTTCTACT+GGG + chr4_1:71555873-71555892 None:intergenic 35.0%
TCGTTCAAATGACTTTCTAC+TGG + chr4_1:71555874-71555893 None:intergenic 35.0%
AGAAAGTCATTTGAACGAGT+TGG - chr4_1:71555876-71555895 Msa0569630:CDS 35.0%
AAGGAGAAAAAGAACTAGAC+AGG - chr4_1:71556122-71556141 Msa0569630:five_prime_UTR 35.0%
! CATTTTTCTTATCCTTGCCA+AGG + chr4_1:71556155-71556174 None:intergenic 35.0%
!! TATCTACATCTGCTGATTCT+CGG + chr4_1:71556182-71556201 None:intergenic 35.0%
GCATACAGAACTAAAAGAGT+TGG - chr4_1:71556254-71556273 Msa0569630:five_prime_UTR 35.0%
TAAGCAAGAATGTACAAGGA+AGG + chr4_1:71556371-71556390 None:intergenic 35.0%
CACCCTTCAATAGCAAAATA+TGG - chr4_1:71556477-71556496 Msa0569630:five_prime_UTR 35.0%
!!! CAGCCATATTTTGCTATTGA+AGG + chr4_1:71556483-71556502 None:intergenic 35.0%
TACTGATGCCATGTACTTAT+TGG - chr4_1:71556527-71556546 Msa0569630:five_prime_UTR 35.0%
GAGACAGACTATTTAATCCT+AGG - chr4_1:71556586-71556605 Msa0569630:five_prime_UTR 35.0%
GGACTTCAGTTCAAATTAAG+GGG - chr4_1:71556607-71556626 Msa0569630:five_prime_UTR 35.0%
AATTTCAGCTGTGGGATTAT+AGG + chr4_1:71556726-71556745 None:intergenic 35.0%
AGTCATACAATTTCAGCTGT+GGG + chr4_1:71556734-71556753 None:intergenic 35.0%
GATGATGTTTCATGGCATGT+TGG + chr4_1:71552351-71552370 None:intergenic 40.0%
TTTCCACCTAAATGGCTTCT+GGG + chr4_1:71552588-71552607 None:intergenic 40.0%
ATTTCCACCTAAATGGCTTC+TGG + chr4_1:71552589-71552608 None:intergenic 40.0%
ACCATATCCTTCCAGGAAAT+GGG + chr4_1:71553120-71553139 None:intergenic 40.0%
AACCATATCCTTCCAGGAAA+TGG + chr4_1:71553121-71553140 None:intergenic 40.0%
AGGATATGGTTAGAGCAAAG+AGG - chr4_1:71553130-71553149 Msa0569630:intron 40.0%
!!! CATTGAAGCTCGTGTTGTTT+TGG - chr4_1:71553177-71553196 Msa0569630:CDS 40.0%
TTCTATGTGTGACTGAGAAG+TGG - chr4_1:71553301-71553320 Msa0569630:intron 40.0%
! GGTCTGTAAAATCTGGAACA+AGG - chr4_1:71553552-71553571 Msa0569630:CDS 40.0%
CCTGCAAAAAGCAGAATTGA+AGG + chr4_1:71553656-71553675 None:intergenic 40.0%
!!! CCTTCAATTCTGCTTTTTGC+AGG - chr4_1:71553653-71553672 Msa0569630:CDS 40.0%
!! TCCCAGCTATTTTCTTGGAA+AGG - chr4_1:71553728-71553747 Msa0569630:CDS 40.0%
CTTGGAAAGGATTGTCAGAT+CGG - chr4_1:71553741-71553760 Msa0569630:CDS 40.0%
CCTTTCAACTCTATATGCCA+AGG + chr4_1:71553788-71553807 None:intergenic 40.0%
CCTTGGCATATAGAGTTGAA+AGG - chr4_1:71553785-71553804 Msa0569630:CDS 40.0%
AAACCTTCTTTATCCTGACC+AGG + chr4_1:71553934-71553953 None:intergenic 40.0%
TGGTCAGGATAAAGAAGGTT+TGG - chr4_1:71553933-71553952 Msa0569630:intron 40.0%
GGTTTGGACACTTCAATTTC+CGG - chr4_1:71553949-71553968 Msa0569630:intron 40.0%
!! CCAATTGCTGTTTAACTCAC+TGG + chr4_1:71553992-71554011 None:intergenic 40.0%
CCAGTGAGTTAAACAGCAAT+TGG - chr4_1:71553989-71554008 Msa0569630:intron 40.0%
CCAAAAGTCCATCAAATCTG+CGG + chr4_1:71554074-71554093 None:intergenic 40.0%
ACATTCCATACATCACGAAC+AGG + chr4_1:71554241-71554260 None:intergenic 40.0%
GAAACACGCATTACTTACTC+AGG + chr4_1:71554286-71554305 None:intergenic 40.0%
CAATAAAGTCCGCATTCTTC+AGG - chr4_1:71554455-71554474 Msa0569630:intron 40.0%
TGCTAGCAAGCATAATACAG+TGG + chr4_1:71554551-71554570 None:intergenic 40.0%
! AATATGCAGGAAGGGTGTAA+AGG - chr4_1:71554685-71554704 Msa0569630:intron 40.0%
GTGTAAAGGCCTGCTTTATA+TGG - chr4_1:71554699-71554718 Msa0569630:intron 40.0%
! CATGAAGCACCATATAAAGC+AGG + chr4_1:71554711-71554730 None:intergenic 40.0%
!!! ATCAGTTTTGAACAGGCTGA+AGG - chr4_1:71554772-71554791 Msa0569630:CDS 40.0%
TCGACTCATTCCATGGAAAA+TGG - chr4_1:71554800-71554819 Msa0569630:CDS 40.0%
! GCTCAAAAGTCCATTTTCCA+TGG + chr4_1:71554813-71554832 None:intergenic 40.0%
!! GTTCCTTTCTGAAGCTATCA+TGG - chr4_1:71554894-71554913 Msa0569630:intron 40.0%
CTTCCATGATAGCTTCAGAA+AGG + chr4_1:71554900-71554919 None:intergenic 40.0%
!! TTCTGAAGCTATCATGGAAG+AGG - chr4_1:71554900-71554919 Msa0569630:intron 40.0%
TAAGAGACTACGTTGAGAAC+CGG - chr4_1:71555222-71555241 Msa0569630:CDS 40.0%
CAGGAAATTGTGATGCTTTC+CGG + chr4_1:71555244-71555263 None:intergenic 40.0%
GTATTCTGCTCACAAACTTC+AGG + chr4_1:71555263-71555282 None:intergenic 40.0%
AATCAAAGGTCAAGAGTTCC+GGG - chr4_1:71555380-71555399 Msa0569630:intron 40.0%
TTGCTGAATATGGTCAGGAA+GGG - chr4_1:71555450-71555469 Msa0569630:intron 40.0%
TGGAAGAGTGGATATTGAGA+AGG - chr4_1:71555505-71555524 Msa0569630:CDS 40.0%
GGTATTTGTAAGCTAGAGAG+AGG + chr4_1:71555577-71555596 None:intergenic 40.0%
TCTTGAAAATTTGCAGGACG+AGG - chr4_1:71555622-71555641 Msa0569630:intron 40.0%
AGTAGATTTCAGAGATGCTG+GGG - chr4_1:71555828-71555847 Msa0569630:intron 40.0%
!! AGTCATTTGAACGAGTTGGT+AGG - chr4_1:71555880-71555899 Msa0569630:CDS 40.0%
GTTTGCGTTGCTTACTTTCA+AGG - chr4_1:71555936-71555955 Msa0569630:CDS 40.0%
TATCGATGTAACATGCCACA+TGG - chr4_1:71555960-71555979 Msa0569630:CDS 40.0%
TTGGGCTTAGCAGTAGATAA+TGG - chr4_1:71556010-71556029 Msa0569630:CDS 40.0%
TTTCTCAAGACACACACAAG+TGG - chr4_1:71556232-71556251 Msa0569630:five_prime_UTR 40.0%
GTGCTAAGCAAGAATGTACA+AGG + chr4_1:71556375-71556394 None:intergenic 40.0%
CAATAGCAAAATATGGCTGC+TGG - chr4_1:71556484-71556503 Msa0569630:five_prime_UTR 40.0%
TATTGCTATGACAGTTTGCG+TGG - chr4_1:71556689-71556708 Msa0569630:five_prime_UTR 40.0%
GAGTCATACAATTTCAGCTG+TGG + chr4_1:71556735-71556754 None:intergenic 40.0%
GTTTCATGGCATGTTGGCAT+AGG + chr4_1:71552345-71552364 None:intergenic 45.0%
TGAGTGTGAGTGTGTGAAGA+AGG + chr4_1:71552395-71552414 None:intergenic 45.0%
AGAAGAAGAAGGTCTGCAAG+TGG + chr4_1:71552430-71552449 None:intergenic 45.0%
! AGGAAGAGCGTAGAGAAAGT+GGG + chr4_1:71552473-71552492 None:intergenic 45.0%
! AAGGAAGAGCGTAGAGAAAG+TGG + chr4_1:71552474-71552493 None:intergenic 45.0%
TTTCCCTCGCAATTTGCACA+AGG - chr4_1:71552530-71552549 Msa0569630:three_prime_UTR 45.0%
TTCCCTCGCAATTTGCACAA+GGG - chr4_1:71552531-71552550 Msa0569630:three_prime_UTR 45.0%
TGCAAACCCAGAAGCCATTT+AGG - chr4_1:71552579-71552598 Msa0569630:three_prime_UTR 45.0%
AAACCCAGAAGCCATTTAGG+TGG - chr4_1:71552582-71552601 Msa0569630:three_prime_UTR 45.0%
AGAAGAAGAAAGTGACCGTG+AGG - chr4_1:71552641-71552660 Msa0569630:three_prime_UTR 45.0%
GAAGCTCACAGTTAACCTCA+CGG + chr4_1:71552659-71552678 None:intergenic 45.0%
GGTTAACTGTGAGCTTCAAG+TGG - chr4_1:71552662-71552681 Msa0569630:three_prime_UTR 45.0%
GTGAGCTTCAAGTGGTTTCT+TGG - chr4_1:71552670-71552689 Msa0569630:three_prime_UTR 45.0%
AGCTTCAAGTGGTTTCTTGG+AGG - chr4_1:71552673-71552692 Msa0569630:three_prime_UTR 45.0%
GCTTCAAGTGGTTTCTTGGA+GGG - chr4_1:71552674-71552693 Msa0569630:three_prime_UTR 45.0%
AAGTGGTTTCTTGGAGGGAA+CGG - chr4_1:71552679-71552698 Msa0569630:three_prime_UTR 45.0%
TGCTCTAACCATATCCTTCC+AGG + chr4_1:71553127-71553146 None:intergenic 45.0%
! ATGCAAGTCTTCTTCTGGCT+GGG + chr4_1:71553836-71553855 None:intergenic 45.0%
TATGCAAGTCTTCTTCTGGC+TGG + chr4_1:71553837-71553856 None:intergenic 45.0%
GAAACCAACAAATTGGCACC+TGG - chr4_1:71553913-71553932 Msa0569630:intron 45.0%
TTTAACTCACTGGAAGACGC+AGG + chr4_1:71553982-71554001 None:intergenic 45.0%
CTACAACACAAGGCTTGTCA+AGG + chr4_1:71554038-71554057 None:intergenic 45.0%
GTTCATCTCCGCAGATTTGA+TGG - chr4_1:71554063-71554082 Msa0569630:intron 45.0%
!!! CCGCAGATTTGATGGACTTT+TGG - chr4_1:71554071-71554090 Msa0569630:intron 45.0%
AAGCTCCTGTTCGTGATGTA+TGG - chr4_1:71554233-71554252 Msa0569630:CDS 45.0%
AAGTCCGCATTCTTCAGGTA+CGG - chr4_1:71554460-71554479 Msa0569630:intron 45.0%
AGCAAGCATAATACAGTGGC+AGG + chr4_1:71554547-71554566 None:intergenic 45.0%
! CACACTGCTAAAGTACTCTG+TGG - chr4_1:71554849-71554868 Msa0569630:CDS 45.0%
TCAATATCCCTCTGTAGTCC+CGG + chr4_1:71555401-71555420 None:intergenic 45.0%
GTTGCTGAATATGGTCAGGA+AGG - chr4_1:71555449-71555468 Msa0569630:intron 45.0%
AGGAAGGGTTTATGCCTATG+AGG - chr4_1:71555465-71555484 Msa0569630:intron 45.0%
TGAGAAGGCTATAACTCGCA+TGG - chr4_1:71555520-71555539 Msa0569630:CDS 45.0%
GAGAAGGCTATAACTCGCAT+GGG - chr4_1:71555521-71555540 Msa0569630:CDS 45.0%
AGCTAGAGAGAGGTCCATTA+TGG + chr4_1:71555567-71555586 None:intergenic 45.0%
AGATTGTCCCAGTAACCCTT+TGG + chr4_1:71555605-71555624 None:intergenic 45.0%
GACGATGACATGATGAAGGA+TGG - chr4_1:71555708-71555727 Msa0569630:intron 45.0%
GTAGATTTCAGAGATGCTGG+GGG - chr4_1:71555829-71555848 Msa0569630:intron 45.0%
TTCTCGCCTTCTATCTCTCA+AGG - chr4_1:71556098-71556117 Msa0569630:five_prime_UTR 45.0%
TCCTTGCCTTGAGAGATAGA+AGG + chr4_1:71556107-71556126 None:intergenic 45.0%
ACTAGACAGGACAACAACCT+TGG - chr4_1:71556135-71556154 Msa0569630:five_prime_UTR 45.0%
TAGCAAAATATGGCTGCTGG+TGG - chr4_1:71556487-71556506 Msa0569630:five_prime_UTR 45.0%
AGCAAAATATGGCTGCTGGT+GGG - chr4_1:71556488-71556507 Msa0569630:five_prime_UTR 45.0%
! TCCTTTCACTTGGCGCATTT+TGG - chr4_1:71556560-71556579 Msa0569630:five_prime_UTR 45.0%
TCCAAAATGCGCCAAGTGAA+AGG + chr4_1:71556564-71556583 None:intergenic 45.0%
!! ATATAAATATATTTATACAT+TGG - chr4_1:71556308-71556327 Msa0569630:five_prime_UTR 5.0%
!!! GCATTGTGGCCACTGGTTTT+TGG + chr4_1:71552309-71552328 None:intergenic 50.0%
TGCCCTTGTGCAAATTGCGA+GGG + chr4_1:71552536-71552555 None:intergenic 50.0%
ATGCCCTTGTGCAAATTGCG+AGG + chr4_1:71552537-71552556 None:intergenic 50.0%
! GGGTTTGCACTGTGTTGTTG+AGG + chr4_1:71552568-71552587 None:intergenic 50.0%
TTGGAGGGAACGGAGAGTTA+AGG - chr4_1:71552689-71552708 Msa0569630:three_prime_UTR 50.0%
CGTATTCCTTGCCCATTTCC+TGG - chr4_1:71553106-71553125 Msa0569630:intron 50.0%
TTCCTTGCCCATTTCCTGGA+AGG - chr4_1:71553110-71553129 Msa0569630:intron 50.0%
ATCCTTCCAGGAAATGGGCA+AGG + chr4_1:71553115-71553134 None:intergenic 50.0%
GCCCATTTCCTGGAAGGATA+TGG - chr4_1:71553116-71553135 Msa0569630:intron 50.0%
TCCTGTGAATCTACGAGCCT+TGG - chr4_1:71553768-71553787 Msa0569630:CDS 50.0%
! TGCAAGTCTTCTTCTGGCTG+GGG + chr4_1:71553835-71553854 None:intergenic 50.0%
CTGACCAGGTGCCAATTTGT+TGG + chr4_1:71553920-71553939 None:intergenic 50.0%
CAACAAATTGGCACCTGGTC+AGG - chr4_1:71553918-71553937 Msa0569630:intron 50.0%
GCACCTGGTCAGGATAAAGA+AGG - chr4_1:71553928-71553947 Msa0569630:intron 50.0%
TGGTCCGTACCTGAAGAATG+CGG + chr4_1:71554467-71554486 None:intergenic 50.0%
TATGGTGCTTCATGCTCGTG+TGG - chr4_1:71554717-71554736 Msa0569630:intron 50.0%
GGTGACTTCGACTCATTCCA+TGG - chr4_1:71554793-71554812 Msa0569630:CDS 50.0%
AAGAGTTCCGGGACTACAGA+GGG - chr4_1:71555391-71555410 Msa0569630:intron 50.0%
TGCCTATGAGGAAGCAGCTT+CGG - chr4_1:71555477-71555496 Msa0569630:intron 50.0%
AAGGCTATAACTCGCATGGG+TGG - chr4_1:71555524-71555543 Msa0569630:CDS 50.0%
ACCGCAAACCAAAGGGTTAC+TGG - chr4_1:71555594-71555613 Msa0569630:intron 50.0%
!! CCCAGTAACCCTTTGGTTTG+CGG + chr4_1:71555598-71555617 None:intergenic 50.0%
CCGCAAACCAAAGGGTTACT+GGG - chr4_1:71555595-71555614 Msa0569630:intron 50.0%
ATTTCAGAGATGCTGGGGGA+TGG - chr4_1:71555833-71555852 Msa0569630:CDS 50.0%
! CAGGCCGCTTTGATATTGCA+CGG - chr4_1:71556043-71556062 Msa0569630:exon 50.0%
! AGGCCGCTTTGATATTGCAC+GGG - chr4_1:71556044-71556063 Msa0569630:exon 50.0%
! AAAGTGGGGTGGACTTCATG+AGG - chr4_1:71556074-71556093 Msa0569630:five_prime_UTR 50.0%
GCCTTCTATCTCTCAAGGCA+AGG - chr4_1:71556103-71556122 Msa0569630:five_prime_UTR 50.0%
ACAGGACAACAACCTTGGCA+AGG - chr4_1:71556140-71556159 Msa0569630:five_prime_UTR 50.0%
! GCTACAGAGTGCGAGCATTG+TGG + chr4_1:71552323-71552342 None:intergenic 55.0%
GCCAAGGCTCGTAGATTCAC+AGG + chr4_1:71553772-71553791 None:intergenic 55.0%
GGAAGACGCAGGCAATGAAC+CGG + chr4_1:71553971-71553990 None:intergenic 55.0%
CAAGAGTTCCGGGACTACAG+AGG - chr4_1:71555390-71555409 Msa0569630:intron 55.0%
AGCCGAAGCTGCTTCCTCAT+AGG + chr4_1:71555482-71555501 None:intergenic 55.0%
GCGCCCGTGCAATATCAAAG+CGG + chr4_1:71556050-71556069 None:intergenic 55.0%
CTTTGATATTGCACGGGCGC+TGG - chr4_1:71556050-71556069 Msa0569630:five_prime_UTR 55.0%
! AGTGCGAGCATTGTGGCCAC+TGG + chr4_1:71552316-71552335 None:intergenic 60.0%
AGGAAGCAGCTTCGGCTGCA+TGG - chr4_1:71555485-71555504 Msa0569630:CDS 60.0%
GCTTCGGCTGCATGGAAGAG+TGG - chr4_1:71555493-71555512 Msa0569630:CDS 60.0%
!! TTGCACGGGCGCTGGAAAAG+TGG - chr4_1:71556058-71556077 Msa0569630:five_prime_UTR 60.0%
!! TGCACGGGCGCTGGAAAAGT+GGG - chr4_1:71556059-71556078 Msa0569630:five_prime_UTR 60.0%
!! GCACGGGCGCTGGAAAAGTG+GGG - chr4_1:71556060-71556079 Msa0569630:five_prime_UTR 65.0%
!! CGGGCGCTGGAAAAGTGGGG+TGG - chr4_1:71556063-71556082 Msa0569630:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 71552294 71556761 71552294 ID=Msa0569630;Name=Msa0569630
chr4_1 mRNA 71552294 71556761 71552294 ID=Msa0569630-mRNA-1;Parent=Msa0569630;Name=Msa0569630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=716|1|1|1|1|1|9|465|631
chr4_1 exon 71552294 71553009 71552294 ID=Msa0569630-mRNA-1:exon:24332;Parent=Msa0569630-mRNA-1
chr4_1 exon 71553158 71553230 71553158 ID=Msa0569630-mRNA-1:exon:24331;Parent=Msa0569630-mRNA-1
chr4_1 exon 71553412 71553870 71553412 ID=Msa0569630-mRNA-1:exon:24330;Parent=Msa0569630-mRNA-1
chr4_1 exon 71554134 71554361 71554134 ID=Msa0569630-mRNA-1:exon:24329;Parent=Msa0569630-mRNA-1
chr4_1 exon 71554579 71554645 71554579 ID=Msa0569630-mRNA-1:exon:24328;Parent=Msa0569630-mRNA-1
chr4_1 exon 71554768 71554868 71554768 ID=Msa0569630-mRNA-1:exon:24327;Parent=Msa0569630-mRNA-1
chr4_1 exon 71554963 71555380 71554963 ID=Msa0569630-mRNA-1:exon:24326;Parent=Msa0569630-mRNA-1
chr4_1 exon 71555482 71555567 71555482 ID=Msa0569630-mRNA-1:exon:24325;Parent=Msa0569630-mRNA-1
chr4_1 exon 71555833 71556761 71555833 ID=Msa0569630-mRNA-1:exon:24324;Parent=Msa0569630-mRNA-1
chr4_1 five_prime_UTR 71556046 71556761 71556046 ID=Msa0569630-mRNA-1:five_prime_utr;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71555833 71556045 71555833 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71555482 71555567 71555482 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71554963 71555380 71554963 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71554768 71554868 71554768 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71554579 71554645 71554579 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71554134 71554361 71554134 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71553412 71553870 71553412 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71553158 71553230 71553158 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 CDS 71552759 71553009 71552759 ID=Msa0569630-mRNA-1:cds;Parent=Msa0569630-mRNA-1
chr4_1 three_prime_UTR 71552294 71552758 71552294 ID=Msa0569630-mRNA-1:three_prime_utr;Parent=Msa0569630-mRNA-1
Gene Sequence

>Msa0569630

ATGACCAAAGAGTCATATGATAAGATTTATGTGAAAAGTGAGTATTTTTATATGCAATATGTGAATAATATGAGAGTTGTTTTTGTTGTTAGTGGGCGTATTCCTTGCCCATTTCCTGGAAGGATATGGTTAGAGCAAAGAGGATTTCAAAGGGCAATGTATTGGCACATTGAAGCTCGTGTTGTTTTGGATCTTCAAGAATTCCTCAATTCTGAATGGGATCGAGAACTTCATTTTTCAATGGTTGATGGAGACTTTAAGAAGTTTGAGGGAAAATGGTCTGTAAAATCTGGAACAAGGTCATCATCAACTAATTTATCTTATGAGGTTAATGTGATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATTGTCAGATCGGATCTTCCTGTGAATCTACGAGCCTTGGCATATAGAGTTGAAAGGAATCTTTTGGGGAATCAGAAACTTCCCCAGCCAGAAGAAGACTTGCATAAAACTTCTTTGGTTGTTAATGGATCTTCTGTCAAAAAGATAAATGGTTCTTTATGTGAAACCAACAAATTGGCACCTGGTCAGGATAAAGAAGGTTTGGACACTTCAATTTCCGGTTCATTGCCTGCGTCTTCCAGTGAGTTAAACAGCAATTGGGGTATATTTGGAAAAGTTTGTAGCCTTGACAAGCCTTGTGTTGTAGATGAAGTTCATCTCCGCAGATTTGATGGACTTTTGGAAAATGGAGGTGTTCATCGTTGTGTCGTTGCAAGCATAACAGTTAAAGCTCCTGTTCGTGATGTATGGAATGTTATGTCTTCGTATGAGACTCTTCCTGAGATAGTTCCAAATTTAGCAATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTTCAGGAAGGGTGTAAAGGCCTGCTTTATATGGTGCTTCATGCTCGTGTGGTGTTAGATTTGTGTGAACAGCTAGAACAAGAGATCAGTTTTGAACAGGCTGAAGGTGACTTCGACTCATTCCATGGAAAATGGACTTTTGAGCAACTAGGAAATCATCACACACTGCTAAAGTACTCTGTGGACTCGAAAATGCGCAGAGATACGTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTACGAAGATCTGCCATCAAACTTGTGTGCAATAAGAGACTACGTTGAGAACCGGAAAGCATCACAATTTCCTGAAGTTTGTGAGCAGAATACGAATTCAGAACAACAAATTATATCATCTGGCTCTGGAGATGATAGCAACTCTAGTTCAGCTGATGATTTTTCTGATTGTAATGTTCAAAGCTCATCTAATCAAAGGTCAAGAGTTCCGGGACTACAGAGGGATATTGAAGTCCTAAAATCTGAACTCCTGAAATTTGTTGCTGAATATGGTCAGGAAGGGTTTATGCCTATGAGGAAGCAGCTTCGGCTGCATGGAAGAGTGGATATTGAGAAGGCTATAACTCGCATGGGTGGATTCAGAAAGATTGCAACCATAATGGACCTCTCTCTAGCTTACAAATACCGCAAACCAAAGGGTTACTGGGACAATCTTGAAAATTTGCAGGACGAGATAAGTAGATTTCAGAGATGCTGGGGGATGGACCCATCATTTATGCCCAGTAGAAAGTCATTTGAACGAGTTGGCCGCTTTGATATTGCACGGGCGCTGGAAAAGTGGGGTGGACTTCATGAGGTTTCTCGCCTTCTATCTCTCAAGGCAAGGAGAAAAAGAACTAGACAGGACAACAACCTTGGCAAGGATAAGAAAAATGATCACCGAGAATCAGCAGATGTAGATAGAGAGATCAATGCAGCATCTAGACCTTATATTTCTCAAGACACACACAAGTGGCATACAGAACTAAAAGAGTTGGACATAAATTGGGTTGAGTAA

Protein sequence

>Msa0569630

MTKESYDKIYVKSEYFYMQYVNNMRVVFVVSGRIPCPFPGRIWLEQRGFQRAMYWHIEARVVLDLQEFLNSEWDRELHFSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAYRVERNLLGNQKLPQPEEDLHKTSLVVNGSSVKKINGSLCETNKLAPGQDKEGLDTSISGSLPASSSELNSNWGIFGKVCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQAEGDFDSFHGKWTFEQLGNHHTLLKYSVDSKMRRDTFLSEAIMEEVIYEDLPSNLCAIRDYVENRKASQFPEVCEQNTNSEQQIISSGSGDDSNSSSADDFSDCNVQSSSNQRSRVPGLQRDIEVLKSELLKFVAEYGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRKIATIMDLSLAYKYRKPKGYWDNLENLQDEISRFQRCWGMDPSFMPSRKSFERVGRFDIARALEKWGGLHEVSRLLSLKARRKRTRQDNNLGKDKKNDHRESADVDREINAASRPYISQDTHKWHTELKELDINWVE*