Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753330 | XP_003611113.1 | 94.685 | 508 | 21 | 1 | 1 | 508 | 1 | 502 | 0.0 | 971 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753330 | sp|Q8NBL1|PGLT1_HUMAN | 26.562 | 384 | 225 | 15 | 84 | 444 | 39 | 388 | 5.05e-26 | 113 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753330 | G7KDD6 | 94.685 | 508 | 21 | 1 | 1 | 508 | 1 | 502 | 0.0 | 971 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005690 | Msa0753330 | 0.844686 | 6.481568e-59 | -8.615850e-47 |
Msa0021980 | Msa0753330 | 0.813719 | 2.219511e-51 | -8.615850e-47 |
Msa0026120 | Msa0753330 | 0.801793 | 7.615269e-49 | -8.615850e-47 |
Msa0053480 | Msa0753330 | 0.816086 | 6.628188e-52 | -8.615850e-47 |
Msa0070090 | Msa0753330 | 0.837807 | 4.178900e-57 | -8.615850e-47 |
Msa0084090 | Msa0753330 | 0.801740 | 7.807158e-49 | -8.615850e-47 |
Msa0089410 | Msa0753330 | 0.830283 | 3.205206e-55 | -8.615850e-47 |
Msa0090350 | Msa0753330 | 0.809026 | 2.318553e-50 | -8.615850e-47 |
Msa0091340 | Msa0753330 | 0.805588 | 1.241469e-49 | -8.615850e-47 |
Msa0092750 | Msa0753330 | 0.811412 | 7.093629e-51 | -8.615850e-47 |
Msa0096510 | Msa0753330 | 0.836137 | 1.116167e-56 | -8.615850e-47 |
Msa0099090 | Msa0753330 | 0.800254 | 1.571396e-48 | -8.615850e-47 |
Msa0117300 | Msa0753330 | 0.815706 | 8.058747e-52 | -8.615850e-47 |
Msa0607620 | Msa0753330 | 0.802000 | 6.902813e-49 | -8.615850e-47 |
Msa0619670 | Msa0753330 | -0.813415 | 2.588900e-51 | -8.615850e-47 |
Msa0626890 | Msa0753330 | 0.805689 | 1.182248e-49 | -8.615850e-47 |
Msa0648160 | Msa0753330 | 0.817116 | 3.895702e-52 | -8.615850e-47 |
Msa0648170 | Msa0753330 | 0.822441 | 2.364795e-53 | -8.615850e-47 |
Msa0649530 | Msa0753330 | 0.805583 | 1.244647e-49 | -8.615850e-47 |
Msa0664110 | Msa0753330 | 0.805475 | 1.311095e-49 | -8.615850e-47 |
Msa0664130 | Msa0753330 | 0.810575 | 1.076512e-50 | -8.615850e-47 |
Msa0665010 | Msa0753330 | 0.818595 | 1.805889e-52 | -8.615850e-47 |
Msa0691740 | Msa0753330 | 0.802257 | 6.111938e-49 | -8.615850e-47 |
Msa0693560 | Msa0753330 | 0.804509 | 2.088173e-49 | -8.615850e-47 |
Msa0712670 | Msa0753330 | 0.800991 | 1.111470e-48 | -8.615850e-47 |
Msa0713530 | Msa0753330 | 0.800165 | 1.637661e-48 | -8.615850e-47 |
Msa0714200 | Msa0753330 | 0.800940 | 1.138695e-48 | -8.615850e-47 |
Msa0714930 | Msa0753330 | 0.849353 | 3.414590e-60 | -8.615850e-47 |
Msa0747660 | Msa0753330 | 0.812689 | 3.737112e-51 | -8.615850e-47 |
Msa0748980 | Msa0753330 | 0.833968 | 3.931508e-56 | -8.615850e-47 |
Msa0753330 | Msa0756440 | 0.807769 | 4.300027e-50 | -8.615850e-47 |
Msa0753330 | Msa0756940 | 0.808685 | 2.743286e-50 | -8.615850e-47 |
Msa0753330 | Msa0795400 | 0.844534 | 7.121597e-59 | -8.615850e-47 |
Msa0753330 | Msa0797240 | 0.802453 | 5.569658e-49 | -8.615850e-47 |
Msa0753330 | Msa0815380 | 0.806217 | 9.156796e-50 | -8.615850e-47 |
Msa0753330 | Msa0825520 | 0.839732 | 1.328436e-57 | -8.615850e-47 |
Msa0753330 | Msa0832560 | 0.896429 | 3.721564e-76 | -8.615850e-47 |
Msa0753330 | Msa0835550 | 0.817825 | 2.696658e-52 | -8.615850e-47 |
Msa0753330 | Msa0836510 | 0.809452 | 1.879365e-50 | -8.615850e-47 |
Msa0753330 | Msa0863780 | 0.800626 | 1.319606e-48 | -8.615850e-47 |
Msa0753330 | Msa0864730 | 0.839747 | 1.316955e-57 | -8.615850e-47 |
Msa0753330 | Msa0864750 | 0.836819 | 7.481595e-57 | -8.615850e-47 |
Msa0753330 | Msa0883430 | 0.801411 | 9.120536e-49 | -8.615850e-47 |
Msa0753330 | Msa0883690 | 0.806759 | 7.036517e-50 | -8.615850e-47 |
Msa0753330 | Msa0899080 | 0.812274 | 4.604039e-51 | -8.615850e-47 |
Msa0753330 | Msa0937350 | 0.813880 | 2.046101e-51 | -8.615850e-47 |
Msa0753330 | Msa0938370 | 0.800998 | 1.107551e-48 | -8.615850e-47 |
Msa0753330 | Msa0967260 | 0.804147 | 2.483278e-49 | -8.615850e-47 |
Msa0753330 | Msa0967960 | 0.803480 | 3.417408e-49 | -8.615850e-47 |
Msa0753330 | Msa0974660 | 0.804535 | 2.061457e-49 | -8.615850e-47 |
Msa0753330 | Msa0984820 | 0.806423 | 8.286179e-50 | -8.615850e-47 |
Msa0753330 | Msa0998940 | 0.801495 | 8.764709e-49 | -8.615850e-47 |
Msa0753330 | Msa1008960 | 0.821880 | 3.191154e-53 | -8.615850e-47 |
Msa0753330 | Msa1028720 | 0.806897 | 6.579956e-50 | -8.615850e-47 |
Msa0753330 | Msa1031220 | 0.810976 | 8.818945e-51 | -8.615850e-47 |
Msa0753330 | Msa1033670 | 0.817226 | 3.680239e-52 | -8.615850e-47 |
Msa0753330 | Msa1038420 | 0.806703 | 7.232982e-50 | -8.615850e-47 |
Msa0753330 | Msa1042380 | 0.812120 | 4.975512e-51 | -8.615850e-47 |
Msa0753330 | Msa1044450 | 0.807138 | 5.850462e-50 | -8.615850e-47 |
Msa0753330 | Msa1050320 | 0.823605 | 1.266070e-53 | -8.615850e-47 |
Msa0753330 | Msa1101480 | 0.811127 | 8.179449e-51 | -8.615850e-47 |
Msa0753330 | Msa1112050 | 0.810390 | 1.180324e-50 | -8.615850e-47 |
Msa0753330 | Msa1125100 | 0.812092 | 5.045215e-51 | -8.615850e-47 |
Msa0753330 | Msa1125150 | 0.810649 | 1.037950e-50 | -8.615850e-47 |
Msa0753330 | Msa1147190 | 0.800076 | 1.707545e-48 | -8.615850e-47 |
Msa0753330 | Msa1161520 | 0.807742 | 4.356717e-50 | -8.615850e-47 |
Msa0753330 | Msa1182400 | 0.813490 | 2.492539e-51 | -8.615850e-47 |
Msa0753330 | Msa1194170 | -0.801606 | 8.316856e-49 | -8.615850e-47 |
Msa0753330 | Msa1203840 | 0.815592 | 8.540924e-52 | -8.615850e-47 |
Msa0753330 | Msa1204390 | 0.804619 | 1.980520e-49 | -8.615850e-47 |
Msa0753330 | Msa1211280 | 0.811462 | 6.915961e-51 | -8.615850e-47 |
Msa0753330 | Msa1211370 | 0.819780 | 9.704457e-53 | -8.615850e-47 |
Msa0753330 | Msa1230190 | 0.812526 | 4.055231e-51 | -8.615850e-47 |
Msa0753330 | Msa1251960 | 0.803536 | 3.327187e-49 | -8.615850e-47 |
Msa0753330 | Msa1289340 | 0.805313 | 1.417974e-49 | -8.615850e-47 |
Msa0753330 | Msa1296610 | 0.803318 | 3.690613e-49 | -8.615850e-47 |
Msa0753330 | Msa1326900 | 0.814544 | 1.459284e-51 | -8.615850e-47 |
Msa0753330 | Msa1329020 | 0.801959 | 7.039918e-49 | -8.615850e-47 |
Msa0753330 | Msa1329820 | 0.825676 | 4.117114e-54 | -8.615850e-47 |
Msa0753330 | Msa1346920 | 0.804034 | 2.621261e-49 | -8.615850e-47 |
Msa0753330 | Msa1356730 | 0.840816 | 6.921116e-58 | -8.615850e-47 |
Msa0753330 | Msa1358030 | 0.898774 | 3.815221e-77 | -8.615850e-47 |
Msa0753330 | Msa1371060 | 0.811463 | 6.912790e-51 | -8.615850e-47 |
Msa0753330 | Msa1384620 | 0.839402 | 1.619141e-57 | -8.615850e-47 |
Msa0753330 | Msa1388270 | 0.803237 | 3.837501e-49 | -8.615850e-47 |
Msa0753330 | Msa1391600 | 0.826994 | 1.998798e-54 | -8.615850e-47 |
Msa0753330 | Msa1397550 | 0.842994 | 1.839918e-58 | -8.615850e-47 |
Msa0753330 | Msa1413880 | 0.829425 | 5.184596e-55 | -8.615850e-47 |
Msa0753330 | Msa1431240 | 0.845727 | 3.391473e-59 | -8.615850e-47 |
Msa0753330 | Msa1432250 | 0.816043 | 6.777958e-52 | -8.615850e-47 |
Msa0753330 | Msa1433380 | 0.821218 | 4.538504e-53 | -8.615850e-47 |
Msa0753330 | Msa1438780 | 0.802791 | 4.744829e-49 | -8.615850e-47 |
Msa0753330 | Msa1450850 | 0.805019 | 1.633478e-49 | -8.615850e-47 |
Msa0753330 | Msa1451780 | 0.820404 | 6.983068e-53 | -8.615850e-47 |
Msa0753330 | Msa1459630 | 0.804827 | 1.792294e-49 | -8.615850e-47 |
Msa0131090 | Msa0753330 | 0.803093 | 4.109933e-49 | -8.615850e-47 |
Msa0136520 | Msa0753330 | 0.842096 | 3.184951e-58 | -8.615850e-47 |
Msa0143360 | Msa0753330 | 0.813901 | 2.024194e-51 | -8.615850e-47 |
Msa0147800 | Msa0753330 | 0.806458 | 8.145078e-50 | -8.615850e-47 |
Msa0148430 | Msa0753330 | 0.821317 | 4.306175e-53 | -8.615850e-47 |
Msa0155030 | Msa0753330 | 0.800216 | 1.599101e-48 | -8.615850e-47 |
Msa0155500 | Msa0753330 | 0.821594 | 3.716525e-53 | -8.615850e-47 |
Msa0160650 | Msa0753330 | 0.807323 | 5.345689e-50 | -8.615850e-47 |
Msa0166580 | Msa0753330 | 0.812410 | 4.299878e-51 | -8.615850e-47 |
Msa0170690 | Msa0753330 | 0.800818 | 1.205855e-48 | -8.615850e-47 |
Msa0177570 | Msa0753330 | 0.809646 | 1.707596e-50 | -8.615850e-47 |
Msa0184030 | Msa0753330 | 0.819940 | 8.919022e-53 | -8.615850e-47 |
Msa0187820 | Msa0753330 | 0.825773 | 3.904987e-54 | -8.615850e-47 |
Msa0197600 | Msa0753330 | 0.802140 | 6.460976e-49 | -8.615850e-47 |
Msa0201910 | Msa0753330 | 0.845839 | 3.160811e-59 | -8.615850e-47 |
Msa0206600 | Msa0753330 | 0.834072 | 3.701520e-56 | -8.615850e-47 |
Msa0207220 | Msa0753330 | 0.800061 | 1.719470e-48 | -8.615850e-47 |
Msa0210870 | Msa0753330 | 0.806682 | 7.305499e-50 | -8.615850e-47 |
Msa0379720 | Msa0753330 | 0.820863 | 5.478150e-53 | -8.615850e-47 |
Msa0413040 | Msa0753330 | 0.803375 | 3.592636e-49 | -8.615850e-47 |
Msa0421390 | Msa0753330 | 0.816734 | 4.748087e-52 | -8.615850e-47 |
Msa0429100 | Msa0753330 | 0.833904 | 4.078811e-56 | -8.615850e-47 |
Msa0429130 | Msa0753330 | 0.817896 | 2.599473e-52 | -8.615850e-47 |
Msa0453310 | Msa0753330 | 0.808300 | 3.314026e-50 | -8.615850e-47 |
Msa0468050 | Msa0753330 | -0.803056 | 4.181290e-49 | -8.615850e-47 |
Msa0240290 | Msa0753330 | 0.806857 | 6.708781e-50 | -8.615850e-47 |
Msa0244370 | Msa0753330 | 0.855015 | 8.377785e-62 | -8.615850e-47 |
Msa0251140 | Msa0753330 | 0.801140 | 1.036209e-48 | -8.615850e-47 |
Msa0282880 | Msa0753330 | 0.845663 | 3.528185e-59 | -8.615850e-47 |
Msa0288280 | Msa0753330 | 0.806089 | 9.741518e-50 | -8.615850e-47 |
Msa0314980 | Msa0753330 | 0.806631 | 7.491334e-50 | -8.615850e-47 |
Msa0317630 | Msa0753330 | 0.821332 | 4.271590e-53 | -8.615850e-47 |
Msa0321180 | Msa0753330 | 0.843047 | 1.781347e-58 | -8.615850e-47 |
Msa0321200 | Msa0753330 | 0.846213 | 2.501913e-59 | -8.615850e-47 |
Msa0324390 | Msa0753330 | 0.858679 | 6.979575e-63 | -8.615850e-47 |
Msa0324430 | Msa0753330 | 0.845152 | 4.853667e-59 | -8.615850e-47 |
Msa0343200 | Msa0753330 | 0.815581 | 8.593375e-52 | -8.615850e-47 |
Msa0343460 | Msa0753330 | 0.804994 | 1.653672e-49 | -8.615850e-47 |
Msa0513500 | Msa0753330 | 0.809790 | 1.589451e-50 | -8.615850e-47 |
Msa0520810 | Msa0753330 | 0.815540 | 8.772887e-52 | -8.615850e-47 |
Msa0525940 | Msa0753330 | 0.843683 | 1.205257e-58 | -8.615850e-47 |
Msa0526570 | Msa0753330 | 0.814352 | 1.609269e-51 | -8.615850e-47 |
Msa0535020 | Msa0753330 | 0.802067 | 6.687314e-49 | -8.615850e-47 |
Msa0535050 | Msa0753330 | 0.802985 | 4.326133e-49 | -8.615850e-47 |
Msa0554410 | Msa0753330 | 0.816743 | 4.724258e-52 | -8.615850e-47 |
Msa0555510 | Msa0753330 | 0.833135 | 6.346226e-56 | -8.615850e-47 |
Msa0569630 | Msa0753330 | 0.818082 | 2.359276e-52 | -8.615850e-47 |
Msa0570310 | Msa0753330 | 0.810905 | 9.133740e-51 | -8.615850e-47 |
Msa0575540 | Msa0753330 | 0.820260 | 7.534775e-53 | -8.615850e-47 |
Msa0584590 | Msa0753330 | 0.809109 | 2.225439e-50 | -8.615850e-47 |
Msa0587060 | Msa0753330 | 0.823741 | 1.176763e-53 | -8.615850e-47 |
Msa0595240 | Msa0753330 | 0.806870 | 6.666134e-50 | -8.615850e-47 |
Msa0597300 | Msa0753330 | 0.810298 | 1.235509e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753330 | MtrunA17_Chr5g0397701 | 94.685 | 508 | 21 | 1 | 1 | 508 | 1 | 502 | 0.0 | 971 |
Msa0753330 | MtrunA17_Chr8g0349371 | 57.950 | 478 | 189 | 6 | 37 | 506 | 20 | 493 | 0.0 | 583 |
Msa0753330 | MtrunA17_Chr8g0349361 | 55.010 | 509 | 205 | 9 | 3 | 504 | 17 | 508 | 0.0 | 581 |
Msa0753330 | MtrunA17_Chr6g0471441 | 60.325 | 431 | 159 | 4 | 84 | 505 | 75 | 502 | 0.0 | 556 |
Msa0753330 | MtrunA17_Chr8g0349241 | 56.481 | 432 | 176 | 5 | 73 | 497 | 62 | 488 | 3.03e-179 | 512 |
Msa0753330 | MtrunA17_Chr7g0247251 | 52.141 | 397 | 177 | 4 | 91 | 477 | 3 | 396 | 4.60e-160 | 460 |
Msa0753330 | MtrunA17_Chr7g0247261 | 50.839 | 417 | 188 | 7 | 73 | 477 | 32 | 443 | 2.10e-158 | 457 |
Msa0753330 | MtrunA17_Chr3g0104841 | 42.308 | 468 | 245 | 13 | 20 | 475 | 11 | 465 | 7.24e-123 | 367 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753330 | AT5G23850.1 | 60.460 | 435 | 156 | 5 | 83 | 504 | 103 | 534 | 0.0 | 566 |
Msa0753330 | AT3G48980.2 | 57.727 | 440 | 166 | 6 | 83 | 505 | 102 | 538 | 0.0 | 555 |
Msa0753330 | AT3G48980.1 | 57.727 | 440 | 166 | 6 | 83 | 505 | 96 | 532 | 0.0 | 555 |
Msa0753330 | AT1G63420.1 | 61.594 | 414 | 142 | 4 | 107 | 505 | 164 | 575 | 0.0 | 551 |
Msa0753330 | AT2G45830.4 | 50.511 | 489 | 217 | 6 | 26 | 503 | 39 | 513 | 0.0 | 522 |
Msa0753330 | AT2G45830.1 | 50.511 | 489 | 217 | 6 | 26 | 503 | 39 | 513 | 0.0 | 522 |
Msa0753330 | AT3G61270.1 | 55.792 | 423 | 178 | 3 | 90 | 506 | 74 | 493 | 0.0 | 519 |
Msa0753330 | AT3G61270.2 | 57.029 | 377 | 153 | 3 | 136 | 506 | 1 | 374 | 7.41e-165 | 472 |
Msa0753330 | AT2G45830.3 | 57.333 | 375 | 150 | 3 | 136 | 503 | 1 | 372 | 2.17e-164 | 471 |
Msa0753330 | AT2G45830.6 | 57.333 | 375 | 150 | 3 | 136 | 503 | 1 | 372 | 2.17e-164 | 471 |
Msa0753330 | AT2G45830.2 | 57.333 | 375 | 150 | 3 | 136 | 503 | 1 | 372 | 2.17e-164 | 471 |
Msa0753330 | AT2G45830.5 | 57.333 | 375 | 150 | 3 | 136 | 503 | 1 | 372 | 2.17e-164 | 471 |
Msa0753330 | AT3G61280.1 | 47.714 | 503 | 242 | 8 | 17 | 504 | 34 | 530 | 2.08e-163 | 474 |
Msa0753330 | AT2G45840.1 | 50.577 | 433 | 194 | 4 | 84 | 505 | 92 | 515 | 2.74e-159 | 463 |
Msa0753330 | AT3G61290.1 | 49.543 | 438 | 197 | 6 | 84 | 506 | 18 | 446 | 7.07e-152 | 442 |
Msa0753330 | AT1G63420.2 | 65.878 | 296 | 88 | 3 | 107 | 391 | 164 | 457 | 1.44e-143 | 421 |
Msa0753330 | AT1G07220.1 | 48.907 | 366 | 176 | 7 | 113 | 474 | 115 | 473 | 2.91e-129 | 385 |
Msa0753330 | AT3G61280.2 | 46.154 | 325 | 155 | 7 | 17 | 327 | 34 | 352 | 1.42e-89 | 279 |
Find 122 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGAGAACCTTATGCTTAT+TGG | 0.143284 | 5_2:-6992711 | Msa0753330:CDS |
TGCAACATTATTGGCCTATA+AGG | 0.166068 | 5_2:-6992203 | Msa0753330:CDS |
TACAGCCATTGCAACATTAT+TGG | 0.224609 | 5_2:-6992212 | Msa0753330:CDS |
CATTTGTCAGTGTCCCTTAT+AGG | 0.257990 | 5_2:+6992189 | None:intergenic |
GCCTGTTGTGCCCATGGGCT+TGG | 0.290931 | 5_2:-6993403 | Msa0753330:CDS |
CTGCTTTCATCTCTTCCCTC+TGG | 0.298937 | 5_2:-6994194 | Msa0753330:CDS |
ACTTGACAGGTACAGGAAAT+TGG | 0.312878 | 5_2:-6991833 | Msa0753330:intron |
TTTCCCTGACTGGTCCTTCT+GGG | 0.316015 | 5_2:-6993328 | Msa0753330:CDS |
CCCAAGCCCATGGGCACAAC+AGG | 0.325244 | 5_2:+6993402 | None:intergenic |
CACATCTCCACGGCTCCTTC+AGG | 0.338213 | 5_2:+6991698 | None:intergenic |
ACAGTGTTTGTTGTTGTTGT+TGG | 0.341053 | 5_2:+6993858 | None:intergenic |
AATTACTGCTTGAACATGTT+TGG | 0.343612 | 5_2:+6993733 | None:intergenic |
CCAATCAACTGCATGTTTGA+TGG | 0.347036 | 5_2:+6992161 | None:intergenic |
AGGAACATTTGCTGCTACTA+AGG | 0.351381 | 5_2:+6993824 | None:intergenic |
TGGAATATTCATTTAGCAAA+TGG | 0.360170 | 5_2:+6991747 | None:intergenic |
TGCTTTCATCTCTTCCCTCT+GGG | 0.365328 | 5_2:-6994193 | Msa0753330:intron |
CCATCAAACATGCAGTTGAT+TGG | 0.367325 | 5_2:-6992161 | Msa0753330:CDS |
GCAACATTATTGGCCTATAA+GGG | 0.371026 | 5_2:-6992202 | Msa0753330:CDS |
AGTCGTGTTGCAGCAGTATA+AGG | 0.373600 | 5_2:+6992679 | None:intergenic |
CCTGTTGTGCCCATGGGCTT+GGG | 0.374284 | 5_2:-6993402 | Msa0753330:CDS |
CATCAAACATGCAGTTGATT+GGG | 0.374429 | 5_2:-6992160 | Msa0753330:CDS |
TCAGGGCTGAGATTAATATA+AGG | 0.381406 | 5_2:-6992792 | Msa0753330:intron |
TTATGAGTGAATCCATGGTT+AGG | 0.390989 | 5_2:-6991628 | Msa0753330:CDS |
AGAGGTGGGAAGATGAATAT+TGG | 0.400013 | 5_2:-6991505 | Msa0753330:CDS |
TGAACATGTTTGGTTCTTGA+TGG | 0.403380 | 5_2:+6993743 | None:intergenic |
AGAGAAGTGTAAAGAGTGGC+AGG | 0.411094 | 5_2:+6994243 | None:intergenic |
CATTTGCTGCTACTAAGGTT+TGG | 0.412482 | 5_2:+6993829 | None:intergenic |
CTGAGATTAATATAAGGCCT+TGG | 0.412673 | 5_2:-6992786 | Msa0753330:CDS |
ATTAGTAATAATAATTCAAA+AGG | 0.415030 | 5_2:-6994392 | Msa0753330:five_prime_UTR |
TTTCCTTTCCAATAAGCATA+AGG | 0.416388 | 5_2:+6992703 | None:intergenic |
CTAAGTGATGTGGGATCAAA+TGG | 0.418582 | 5_2:+6991569 | None:intergenic |
CTGACTGGTCCTTCTGGGGT+TGG | 0.423962 | 5_2:-6993323 | Msa0753330:intron |
CTTGTGCAAGCCATGGTCTC+CGG | 0.424836 | 5_2:+6991674 | None:intergenic |
GGATGAATGTGATGTGAGAT+TGG | 0.428549 | 5_2:-6994371 | Msa0753330:five_prime_UTR |
AGATACAAAGTTTATATTGA+AGG | 0.435834 | 5_2:-6992330 | Msa0753330:CDS |
CCCTGGTAAAATTCCAGACT+TGG | 0.439877 | 5_2:-6993451 | Msa0753330:CDS |
GGCTTGCACAAGATCATATT+CGG | 0.443269 | 5_2:-6991663 | Msa0753330:CDS |
AAAAGGAATAACGAGAGAAA+TGG | 0.456201 | 5_2:-6993616 | Msa0753330:CDS |
AGGTGGTGGGCCCAAGCCCA+TGG | 0.463656 | 5_2:+6993392 | None:intergenic |
TCAAACATGAGTTCCAAGTC+TGG | 0.465096 | 5_2:+6993438 | None:intergenic |
GGATCAAATGGAGGAGGCAA+GGG | 0.468934 | 5_2:+6991581 | None:intergenic |
ACGGCTCCTTCAGGAACTCT+TGG | 0.477411 | 5_2:+6991707 | None:intergenic |
GTGCGTATGTATTTGCTCAT+TGG | 0.480358 | 5_2:+6991474 | None:intergenic |
ACTGTACCTGCGTAAATAAA+CGG | 0.480417 | 5_2:+6992611 | None:intergenic |
TATGAGTGAATCCATGGTTA+GGG | 0.480560 | 5_2:-6991627 | Msa0753330:CDS |
GTACAGGAAATTGGTAAAGC+CGG | 0.483609 | 5_2:-6991824 | Msa0753330:CDS |
TGGCTCAAACTCGAGAAGCT+TGG | 0.486727 | 5_2:+6991727 | None:intergenic |
AATGGAGGAGGCAAGGGGCA+AGG | 0.487872 | 5_2:+6991587 | None:intergenic |
CAACCCCAGAAGGACCAGTC+AGG | 0.488262 | 5_2:+6993324 | None:intergenic |
ATGGAGGAGGCAAGGGGCAA+GGG | 0.489670 | 5_2:+6991588 | None:intergenic |
TCTTCATGAATGAATTCTGA+TGG | 0.492019 | 5_2:+6994301 | None:intergenic |
GAACCTTATGCTTATTGGAA+AGG | 0.492867 | 5_2:-6992706 | Msa0753330:CDS |
ATGTTTCAACCGCACAGGAT+TGG | 0.493210 | 5_2:-6992639 | Msa0753330:CDS |
CATTTGATCCCACATCACTT+AGG | 0.497579 | 5_2:-6991568 | Msa0753330:CDS |
TGGCAGACCAATGTACATAT+AGG | 0.498282 | 5_2:-6992462 | Msa0753330:intron |
TTCTTGAATAAACTTGCTCC+CGG | 0.505080 | 5_2:+6991805 | None:intergenic |
TTGTAATGTTTCAACCGCAC+AGG | 0.505206 | 5_2:-6992644 | Msa0753330:CDS |
GAAATTTATGAGTGAATCCA+TGG | 0.508746 | 5_2:-6991633 | Msa0753330:CDS |
CAGGAGTCTTTCTGAGAAGA+AGG | 0.509789 | 5_2:+6994262 | None:intergenic |
TTGTGCAAGCCATGGTCTCC+GGG | 0.511415 | 5_2:+6991675 | None:intergenic |
TGAGATTAATATAAGGCCTT+GGG | 0.511476 | 5_2:-6992785 | Msa0753330:CDS |
CGGTTGAAACATTACAATTG+AGG | 0.511958 | 5_2:+6992650 | None:intergenic |
AGGAATAACGAGAGAAATGG+TGG | 0.512055 | 5_2:-6993613 | Msa0753330:CDS |
TACAGGAAATTGGTAAAGCC+GGG | 0.515192 | 5_2:-6991823 | Msa0753330:CDS |
GAGGCTTCACTAATAGTGTA+GGG | 0.515936 | 5_2:+6992262 | None:intergenic |
ATGGTACAATTCAGTACTGT+TGG | 0.518317 | 5_2:+6993762 | None:intergenic |
CGAGGCTTCACTAATAGTGT+AGG | 0.521509 | 5_2:+6992261 | None:intergenic |
CATCTTCCCACCTCTCAACT+CGG | 0.523375 | 5_2:+6991513 | None:intergenic |
TGATAAGCCTGTTGTGCCCA+TGG | 0.523385 | 5_2:-6993409 | Msa0753330:CDS |
GATGAATGTGATGTGAGATT+GGG | 0.528842 | 5_2:-6994370 | Msa0753330:five_prime_UTR |
TATGTCCGGAGTATTTCAAA+TGG | 0.530428 | 5_2:-6993668 | Msa0753330:CDS |
GAGAAGAGAAGTGTAAAGAG+TGG | 0.530743 | 5_2:+6994239 | None:intergenic |
GGGATCAAATGGAGGAGGCA+AGG | 0.532099 | 5_2:+6991580 | None:intergenic |
GGAGATGTGCCCGGAGACCA+TGG | 0.536537 | 5_2:-6991684 | Msa0753330:CDS |
TTCCCTGACTGGTCCTTCTG+GGG | 0.537571 | 5_2:-6993327 | Msa0753330:CDS |
AGGATTCAATCACTCAAACT+TGG | 0.539657 | 5_2:-6992482 | Msa0753330:CDS |
AGGAGCCGTGGAGATGTGCC+CGG | 0.545726 | 5_2:-6991693 | Msa0753330:CDS |
TAGCAATGCAAATAGTAAGC+TGG | 0.553109 | 5_2:-6991432 | Msa0753330:three_prime_UTR |
TTTGTATTTCTATAACTCAA+AGG | 0.553445 | 5_2:+6991374 | None:intergenic |
TAATAGTGTAGGGGAATCAC+AGG | 0.553816 | 5_2:+6992272 | None:intergenic |
TGATGGAGTGTGGAAGCTCT+AGG | 0.554092 | 5_2:+6994318 | None:intergenic |
GGTGGAGAAAGCAAAGAAAA+CGG | 0.555442 | 5_2:-6993595 | Msa0753330:CDS |
AGATGAAAGCAGCGGTGATG+AGG | 0.558418 | 5_2:+6994205 | None:intergenic |
TAATCAACCGAGTTGAGAGG+TGG | 0.563561 | 5_2:-6991520 | Msa0753330:CDS |
TGTAGAAGGTTCCCTAACCA+TGG | 0.568492 | 5_2:+6991616 | None:intergenic |
AAGCAGCGGTGATGAGGATG+AGG | 0.570960 | 5_2:+6994211 | None:intergenic |
GGAACTACCTATATGTACAT+TGG | 0.572220 | 5_2:+6992455 | None:intergenic |
AAGAGTTCCTGAAGGAGCCG+TGG | 0.572482 | 5_2:-6991705 | Msa0753330:CDS |
GGTGGTGGGCCCAAGCCCAT+GGG | 0.576300 | 5_2:+6993393 | None:intergenic |
TTCACGAGGATCTAAAACCA+TGG | 0.579924 | 5_2:-6993644 | Msa0753330:CDS |
AATAATGTTGCAATGGCTGT+AGG | 0.584450 | 5_2:+6992214 | None:intergenic |
ATCAAACATGCAGTTGATTG+GGG | 0.586497 | 5_2:-6992159 | Msa0753330:CDS |
ATATGATCTTGTGCAAGCCA+TGG | 0.588656 | 5_2:+6991667 | None:intergenic |
TGAATCCATTTGAAATACTC+CGG | 0.590414 | 5_2:+6993663 | None:intergenic |
TGGATTAAAGAGTCTGAACA+AGG | 0.592715 | 5_2:-6992502 | Msa0753330:CDS |
ATAGGCCAATAATGTTGCAA+TGG | 0.599822 | 5_2:+6992207 | None:intergenic |
TCCTTCAGAAGATGTTCCCA+AGG | 0.602650 | 5_2:+6992769 | None:intergenic |
ATTTAATCAACCGAGTTGAG+AGG | 0.603531 | 5_2:-6991523 | Msa0753330:CDS |
TTGGTTACTGTGCTGATCGG+TGG | 0.603838 | 5_2:-6993365 | Msa0753330:CDS |
GCCTTGGGAACATCTTCTGA+AGG | 0.605195 | 5_2:-6992770 | Msa0753330:CDS |
GGTCTCCGGGCACATCTCCA+CGG | 0.608605 | 5_2:+6991688 | None:intergenic |
AACCCCAGAAGGACCAGTCA+GGG | 0.609191 | 5_2:+6993325 | None:intergenic |
CTGTGCTGATCGGTGGACAC+AGG | 0.621325 | 5_2:-6993358 | Msa0753330:CDS |
CGGAAATTAACTAACCCAGA+GGG | 0.622625 | 5_2:+6994179 | None:intergenic |
GATCAAATGGAGGAGGCAAG+GGG | 0.622941 | 5_2:+6991582 | None:intergenic |
GATGTGGGATCAAATGGAGG+AGG | 0.623679 | 5_2:+6991575 | None:intergenic |
TTTGAGCCAAGAGTTCCTGA+AGG | 0.639566 | 5_2:-6991713 | Msa0753330:CDS |
AATCAACCGAGTTGAGAGGT+GGG | 0.639972 | 5_2:-6991519 | Msa0753330:CDS |
GATAAGCCTGTTGTGCCCAT+GGG | 0.642853 | 5_2:-6993408 | Msa0753330:CDS |
GAAACTCCGTTTATTTACGC+AGG | 0.643555 | 5_2:-6992617 | Msa0753330:intron |
ACATACATACCAACCCCAGA+AGG | 0.644873 | 5_2:+6993314 | None:intergenic |
GAGGGAAGAGATGAAAGCAG+CGG | 0.652015 | 5_2:+6994197 | None:intergenic |
GAATGAATTCTGATGGAGTG+TGG | 0.658307 | 5_2:+6994308 | None:intergenic |
TATTCAAGAAGAGCTCAACA+TGG | 0.666732 | 5_2:-6991792 | Msa0753330:CDS |
GTGAAGAAATCGTAGTATCG+AGG | 0.668956 | 5_2:+6992243 | None:intergenic |
AGTGATGTGGGATCAAATGG+AGG | 0.680524 | 5_2:+6991572 | None:intergenic |
AGGCTTCACTAATAGTGTAG+GGG | 0.685668 | 5_2:+6992263 | None:intergenic |
TTTATATTGAAGGATACGCG+TGG | 0.686560 | 5_2:-6992320 | Msa0753330:CDS |
TTGCACAAGATCATATTCGG+TGG | 0.699977 | 5_2:-6991660 | Msa0753330:CDS |
CAATTACTGAGAAAGTACCC+TGG | 0.713086 | 5_2:-6993468 | Msa0753330:CDS |
GTATTTCAAATGGATTCACG+AGG | 0.719253 | 5_2:-6993658 | Msa0753330:CDS |
ACGGAGTTTCCAATCCTGTG+CGG | 0.723022 | 5_2:+6992630 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAGTAATAATAATTCAAA+AGG | - | chr5_2:6991319-6991338 | Msa0753330:three_prime_UTR | 10.0% |
!!! | GACATATTTTATATATTTTA+TGG | - | chr5_2:6992785-6992804 | Msa0753330:CDS | 10.0% |
!!! | AAACAGTTTAATCTATTTTT+TGG | - | chr5_2:6991785-6991804 | Msa0753330:CDS | 15.0% |
!!! | AAGTCTTCTTTGTTTTATTA+AGG | - | chr5_2:6991269-6991288 | Msa0753330:three_prime_UTR | 20.0% |
!!! | AGTCTTCTTTGTTTTATTAA+GGG | - | chr5_2:6991270-6991289 | Msa0753330:three_prime_UTR | 20.0% |
!! | TAAGTAAATTACATTGTGTA+GGG | + | chr5_2:6991591-6991610 | None:intergenic | 20.0% |
!! | TTAAGTAAATTACATTGTGT+AGG | + | chr5_2:6991592-6991611 | None:intergenic | 20.0% |
!! | CACAATGTAATTTACTTAAT+CGG | - | chr5_2:6991593-6991612 | Msa0753330:CDS | 20.0% |
!! | ACAATGTAATTTACTTAATC+GGG | - | chr5_2:6991594-6991613 | Msa0753330:CDS | 20.0% |
!!! | TTTATTTTTTCATTCTTCGT+AGG | + | chr5_2:6991910-6991929 | None:intergenic | 20.0% |
!! | AGAATGAAAAAATAAAACAG+AGG | - | chr5_2:6991914-6991933 | Msa0753330:intron | 20.0% |
!! | AAAAACAACAAAAAACAACA+TGG | - | chr5_2:6992020-6992039 | Msa0753330:intron | 20.0% |
!! | TACATTAATCAACAACTATA+TGG | + | chr5_2:6992496-6992515 | None:intergenic | 20.0% |
!!! | ATATAGTTGTTGATTAATGT+AGG | - | chr5_2:6992495-6992514 | Msa0753330:CDS | 20.0% |
!! | TTATTCAATAACTAACTAAC+TGG | + | chr5_2:6992603-6992622 | None:intergenic | 20.0% |
!! | CTAAATTGAAGAGATAATAA+TGG | + | chr5_2:6992641-6992660 | None:intergenic | 20.0% |
!! | TAGTTTAAGTACTAATTTCA+TGG | - | chr5_2:6992858-6992877 | Msa0753330:intron | 20.0% |
!!! | AAATGCAATGTTTTTATTTC+AGG | - | chr5_2:6992901-6992920 | Msa0753330:intron | 20.0% |
!!! | AATGCAATGTTTTTATTTCA+GGG | - | chr5_2:6992902-6992921 | Msa0753330:intron | 20.0% |
!!! | ATATTTTGTCACAAATATGT+AGG | - | chr5_2:6993184-6993203 | Msa0753330:intron | 20.0% |
!!! | AAATGTACATGATGAATTTT+GGG | + | chr5_2:6993320-6993339 | None:intergenic | 20.0% |
!!! | TAAATGTACATGATGAATTT+TGG | + | chr5_2:6993321-6993340 | None:intergenic | 20.0% |
!! | AGATACAAAGTTTATATTGA+AGG | - | chr5_2:6993381-6993400 | Msa0753330:CDS | 20.0% |
!!! | TTTGTATTTCTATAACTCAA+AGG | + | chr5_2:6994340-6994359 | None:intergenic | 20.0% |
! | AATGAATGAGTGTAATTAAG+CGG | + | chr5_2:6991555-6991574 | None:intergenic | 25.0% |
! | CAATGTAATTTACTTAATCG+GGG | - | chr5_2:6991595-6991614 | Msa0753330:CDS | 25.0% |
! | TATACATCATTATTAGATGG+CGG | - | chr5_2:6991705-6991724 | Msa0753330:CDS | 25.0% |
!!! | TTTTTTTTTAACTCGATACC+TGG | + | chr5_2:6991762-6991781 | None:intergenic | 25.0% |
! | ATCCAAATAACATAAAAGTG+GGG | + | chr5_2:6992473-6992492 | None:intergenic | 25.0% |
! | GATCCAAATAACATAAAAGT+GGG | + | chr5_2:6992474-6992493 | None:intergenic | 25.0% |
!! | ATAATCACATTTTCTTGTCT+GGG | + | chr5_2:6992550-6992569 | None:intergenic | 25.0% |
!! | AATAATCACATTTTCTTGTC+TGG | + | chr5_2:6992551-6992570 | None:intergenic | 25.0% |
!! | TCTTCTGAAGGATATAAAAA+AGG | - | chr5_2:6992953-6992972 | Msa0753330:intron | 25.0% |
!! | CTTCTGAAGGATATAAAAAA+GGG | - | chr5_2:6992954-6992973 | Msa0753330:intron | 25.0% |
!! | TTCTGAAGGATATAAAAAAG+GGG | - | chr5_2:6992955-6992974 | Msa0753330:intron | 25.0% |
!! | ATATGTGATCTGAGATTAAA+TGG | + | chr5_2:6993280-6993299 | None:intergenic | 25.0% |
! | AAACTTTGTATCTGATATCA+AGG | + | chr5_2:6993374-6993393 | None:intergenic | 25.0% |
!! | TTTAAGACAAATGAATGACA+AGG | + | chr5_2:6993631-6993650 | None:intergenic | 25.0% |
! | AGTAGTAAAGATTTAAATCG+TGG | - | chr5_2:6993679-6993698 | Msa0753330:CDS | 25.0% |
! | TGGAATATTCATTTAGCAAA+TGG | + | chr5_2:6993967-6993986 | None:intergenic | 25.0% |
! | TAAAAAATCCTAAGTGATGT+GGG | + | chr5_2:6994154-6994173 | None:intergenic | 25.0% |
! | ATAAAAAATCCTAAGTGATG+TGG | + | chr5_2:6994155-6994174 | None:intergenic | 25.0% |
TCTTCATGAATGAATTCTGA+TGG | + | chr5_2:6991413-6991432 | None:intergenic | 30.0% | |
GCCTATACATCATTATTAGA+TGG | - | chr5_2:6991702-6991721 | Msa0753330:CDS | 30.0% | |
GCCATCTAATAATGATGTAT+AGG | + | chr5_2:6991706-6991725 | None:intergenic | 30.0% | |
ATACATCATTATTAGATGGC+GGG | - | chr5_2:6991706-6991725 | Msa0753330:CDS | 30.0% | |
AATTACTGCTTGAACATGTT+TGG | + | chr5_2:6991981-6992000 | None:intergenic | 30.0% | |
!! | GTTTTTAACGTTGTTGTTGT+CGG | + | chr5_2:6992006-6992025 | None:intergenic | 30.0% |
AAAAAACAACATGGTATGTC+CGG | - | chr5_2:6992029-6992048 | Msa0753330:intron | 30.0% | |
! | TGAATCCATTTGAAATACTC+CGG | + | chr5_2:6992051-6992070 | None:intergenic | 30.0% |
CTAAAACCATGGAAGAAAAA+AGG | - | chr5_2:6992078-6992097 | Msa0753330:intron | 30.0% | |
!!! | GTTATTCCTTTTTTCTTCCA+TGG | + | chr5_2:6992087-6992106 | None:intergenic | 30.0% |
AAAAGGAATAACGAGAGAAA+TGG | - | chr5_2:6992095-6992114 | Msa0753330:intron | 30.0% | |
AAACAAGTAGAACTGTGTTT+AGG | + | chr5_2:6992424-6992443 | None:intergenic | 30.0% | |
GGATCCAAATAACATAAAAG+TGG | + | chr5_2:6992475-6992494 | None:intergenic | 30.0% | |
TCATTGTCATTCAAAGTTTG+TGG | - | chr5_2:6992518-6992537 | Msa0753330:intron | 30.0% | |
!! | ATTGTTGCTTCTAAGATGTA+GGG | + | chr5_2:6992759-6992778 | None:intergenic | 30.0% |
!! | AATTGTTGCTTCTAAGATGT+AGG | + | chr5_2:6992760-6992779 | None:intergenic | 30.0% |
TGAGATTAATATAAGGCCTT+GGG | - | chr5_2:6992926-6992945 | Msa0753330:intron | 30.0% | |
TTTCCTTTCCAATAAGCATA+AGG | + | chr5_2:6993011-6993030 | None:intergenic | 30.0% | |
TACAGTACAGACATATCTAA+AGG | - | chr5_2:6993117-6993136 | Msa0753330:intron | 30.0% | |
TTGTCACAAATATGTAGGAT+TGG | - | chr5_2:6993189-6993208 | Msa0753330:intron | 30.0% | |
GTGGTTATGATATTATATCG+CGG | - | chr5_2:6993698-6993717 | Msa0753330:CDS | 30.0% | |
!! | ATCCTAGTCAAATGTTTTTG+AGG | - | chr5_2:6993724-6993743 | Msa0753330:CDS | 30.0% |
GAAATTTATGAGTGAATCCA+TGG | - | chr5_2:6994078-6994097 | Msa0753330:intron | 30.0% | |
GATGAATGTGATGTGAGATT+GGG | - | chr5_2:6991341-6991360 | Msa0753330:three_prime_UTR | 35.0% | |
AACACATGAATTGTTAGCAG+AGG | + | chr5_2:6991676-6991695 | None:intergenic | 35.0% | |
TCTGCTAACAATTCATGTGT+TGG | - | chr5_2:6991675-6991694 | Msa0753330:CDS | 35.0% | |
CTGCTAACAATTCATGTGTT+GGG | - | chr5_2:6991676-6991695 | Msa0753330:CDS | 35.0% | |
!! | ACAGTGTTTGTTGTTGTTGT+TGG | + | chr5_2:6991856-6991875 | None:intergenic | 35.0% |
ATGGTACAATTCAGTACTGT+TGG | + | chr5_2:6991952-6991971 | None:intergenic | 35.0% | |
!! | TGAACATGTTTGGTTCTTGA+TGG | + | chr5_2:6991971-6991990 | None:intergenic | 35.0% |
! | TATGTCCGGAGTATTTCAAA+TGG | - | chr5_2:6992043-6992062 | Msa0753330:intron | 35.0% |
! | GTATTTCAAATGGATTCACG+AGG | - | chr5_2:6992053-6992072 | Msa0753330:intron | 35.0% |
!! | TTTAGGTTGGTGGTGAAAAA+TGG | - | chr5_2:6992144-6992163 | Msa0753330:CDS | 35.0% |
!! | TTGGTGGTGAAAAATGGAAA+AGG | - | chr5_2:6992150-6992169 | Msa0753330:CDS | 35.0% |
! | TGGTGGTGAAAAATGGAAAA+GGG | - | chr5_2:6992151-6992170 | Msa0753330:CDS | 35.0% |
!!! | TTTTTGGTTACTGTGCTGAT+CGG | - | chr5_2:6992343-6992362 | Msa0753330:intron | 35.0% |
GTCATTCAAAGTTTGTGGTT+AGG | - | chr5_2:6992523-6992542 | Msa0753330:intron | 35.0% | |
GATGTAGGGAACAAAATTGA+CGG | + | chr5_2:6992745-6992764 | None:intergenic | 35.0% | |
TCAGGGCTGAGATTAATATA+AGG | - | chr5_2:6992919-6992938 | Msa0753330:intron | 35.0% | |
CTGAGATTAATATAAGGCCT+TGG | - | chr5_2:6992925-6992944 | Msa0753330:intron | 35.0% | |
AGGGGAACAAAAGAGAAAAA+TGG | - | chr5_2:6992973-6992992 | Msa0753330:intron | 35.0% | |
ACAGAGAACCTTATGCTTAT+TGG | - | chr5_2:6993000-6993019 | Msa0753330:intron | 35.0% | |
GAACCTTATGCTTATTGGAA+AGG | - | chr5_2:6993005-6993024 | Msa0753330:intron | 35.0% | |
CGGTTGAAACATTACAATTG+AGG | + | chr5_2:6993064-6993083 | None:intergenic | 35.0% | |
ACTGTACCTGCGTAAATAAA+CGG | + | chr5_2:6993103-6993122 | None:intergenic | 35.0% | |
TGGATTAAAGAGTCTGAACA+AGG | - | chr5_2:6993209-6993228 | Msa0753330:intron | 35.0% | |
AGGATTCAATCACTCAAACT+TGG | - | chr5_2:6993229-6993248 | Msa0753330:intron | 35.0% | |
GGAACTACCTATATGTACAT+TGG | + | chr5_2:6993259-6993278 | None:intergenic | 35.0% | |
TTTATATTGAAGGATACGCG+TGG | - | chr5_2:6993391-6993410 | Msa0753330:CDS | 35.0% | |
AATAATGTTGCAATGGCTGT+AGG | + | chr5_2:6993500-6993519 | None:intergenic | 35.0% | |
TACAGCCATTGCAACATTAT+TGG | - | chr5_2:6993499-6993518 | Msa0753330:CDS | 35.0% | |
ATAGGCCAATAATGTTGCAA+TGG | + | chr5_2:6993507-6993526 | None:intergenic | 35.0% | |
! | TGCAACATTATTGGCCTATA+AGG | - | chr5_2:6993508-6993527 | Msa0753330:CDS | 35.0% |
! | GCAACATTATTGGCCTATAA+GGG | - | chr5_2:6993509-6993528 | Msa0753330:CDS | 35.0% |
CATCAAACATGCAGTTGATT+GGG | - | chr5_2:6993551-6993570 | Msa0753330:CDS | 35.0% | |
ATCAAACATGCAGTTGATTG+GGG | - | chr5_2:6993552-6993571 | Msa0753330:CDS | 35.0% | |
GAATATCGAAAGATATGCGA+TGG | + | chr5_2:6993609-6993628 | None:intergenic | 35.0% | |
TGCCTCAAAAACATTTGACT+AGG | + | chr5_2:6993729-6993748 | None:intergenic | 35.0% | |
CAACCTCAATTGTAATTGCA+AGG | - | chr5_2:6993747-6993766 | Msa0753330:CDS | 35.0% | |
! | TTCTTGAATAAACTTGCTCC+CGG | + | chr5_2:6993909-6993928 | None:intergenic | 35.0% |
TATTCAAGAAGAGCTCAACA+TGG | - | chr5_2:6993919-6993938 | Msa0753330:intron | 35.0% | |
TTATGAGTGAATCCATGGTT+AGG | - | chr5_2:6994083-6994102 | Msa0753330:intron | 35.0% | |
TATGAGTGAATCCATGGTTA+GGG | - | chr5_2:6994084-6994103 | Msa0753330:intron | 35.0% | |
! | ATTTAATCAACCGAGTTGAG+AGG | - | chr5_2:6994188-6994207 | Msa0753330:intron | 35.0% |
TAGCAATGCAAATAGTAAGC+TGG | - | chr5_2:6994279-6994298 | Msa0753330:CDS | 35.0% | |
GGATGAATGTGATGTGAGAT+TGG | - | chr5_2:6991340-6991359 | Msa0753330:three_prime_UTR | 40.0% | |
!!! | AAGCTCTAGGTAGCTGTTTT+CGG | + | chr5_2:6991383-6991402 | None:intergenic | 40.0% |
GAATGAATTCTGATGGAGTG+TGG | + | chr5_2:6991406-6991425 | None:intergenic | 40.0% | |
! | GAGAAGAGAAGTGTAAAGAG+TGG | + | chr5_2:6991475-6991494 | None:intergenic | 40.0% |
CGGAAATTAACTAACCCAGA+GGG | + | chr5_2:6991535-6991554 | None:intergenic | 40.0% | |
TTCCACAACTTATTCGATCC+TGG | - | chr5_2:6991733-6991752 | Msa0753330:CDS | 40.0% | |
! | CATTTGCTGCTACTAAGGTT+TGG | + | chr5_2:6991885-6991904 | None:intergenic | 40.0% |
! | AGGAACATTTGCTGCTACTA+AGG | + | chr5_2:6991890-6991909 | None:intergenic | 40.0% |
! | TTCACGAGGATCTAAAACCA+TGG | - | chr5_2:6992067-6992086 | Msa0753330:intron | 40.0% |
AGGAATAACGAGAGAAATGG+TGG | - | chr5_2:6992098-6992117 | Msa0753330:intron | 40.0% | |
GGTGGAGAAAGCAAAGAAAA+CGG | - | chr5_2:6992116-6992135 | Msa0753330:intron | 40.0% | |
! | CAAAGAAAACGGCGCATTTT+AGG | - | chr5_2:6992127-6992146 | Msa0753330:intron | 40.0% |
! | ACGTGATGTTTTCACCGTTT+GGG | - | chr5_2:6992212-6992231 | Msa0753330:CDS | 40.0% |
TAATTGCAGAATCCCCCAAA+CGG | + | chr5_2:6992229-6992248 | None:intergenic | 40.0% | |
!! | CAATTACTGAGAAAGTACCC+TGG | - | chr5_2:6992243-6992262 | Msa0753330:CDS | 40.0% |
!! | CCAAGTCTGGAATTTTACCA+GGG | + | chr5_2:6992263-6992282 | None:intergenic | 40.0% |
!! | TCCAAGTCTGGAATTTTACC+AGG | + | chr5_2:6992264-6992283 | None:intergenic | 40.0% |
TCAAACATGAGTTCCAAGTC+TGG | + | chr5_2:6992276-6992295 | None:intergenic | 40.0% | |
AGTAACCAAAAACAGGTGGT+GGG | + | chr5_2:6992335-6992354 | None:intergenic | 40.0% | |
TCAGCACAGTAACCAAAAAC+AGG | + | chr5_2:6992342-6992361 | None:intergenic | 40.0% | |
! | AGGATATTGTTTTCCCTGAC+TGG | - | chr5_2:6992373-6992392 | Msa0753330:intron | 40.0% |
TAATTCTCGTGAAGCATGCT+TGG | - | chr5_2:6992447-6992466 | Msa0753330:intron | 40.0% | |
!! | GGCCCCACTTTTATGTTATT+TGG | - | chr5_2:6992468-6992487 | Msa0753330:CDS | 40.0% |
! | TACCTTTGTTATGTCGACGA+CGG | - | chr5_2:6992576-6992595 | Msa0753330:intron | 40.0% |
TTGTAATGTTTCAACCGCAC+AGG | - | chr5_2:6993067-6993086 | Msa0753330:intron | 40.0% | |
GAAACTCCGTTTATTTACGC+AGG | - | chr5_2:6993094-6993113 | Msa0753330:intron | 40.0% | |
TGGCAGACCAATGTACATAT+AGG | - | chr5_2:6993249-6993268 | Msa0753330:intron | 40.0% | |
TAATAGTGTAGGGGAATCAC+AGG | + | chr5_2:6993442-6993461 | None:intergenic | 40.0% | |
AGGCTTCACTAATAGTGTAG+GGG | + | chr5_2:6993451-6993470 | None:intergenic | 40.0% | |
GAGGCTTCACTAATAGTGTA+GGG | + | chr5_2:6993452-6993471 | None:intergenic | 40.0% | |
GTGAAGAAATCGTAGTATCG+AGG | + | chr5_2:6993471-6993490 | None:intergenic | 40.0% | |
CATTTGTCAGTGTCCCTTAT+AGG | + | chr5_2:6993525-6993544 | None:intergenic | 40.0% | |
CCAATCAACTGCATGTTTGA+TGG | + | chr5_2:6993553-6993572 | None:intergenic | 40.0% | |
CCATCAAACATGCAGTTGAT+TGG | - | chr5_2:6993550-6993569 | Msa0753330:CDS | 40.0% | |
! | CAAGAAGCATACACGGTATA+TGG | + | chr5_2:6993657-6993676 | None:intergenic | 40.0% |
! | CTACTGTCAAGAAGCATACA+CGG | + | chr5_2:6993664-6993683 | None:intergenic | 40.0% |
CTGCCTTGCAATTACAATTG+AGG | + | chr5_2:6993753-6993772 | None:intergenic | 40.0% | |
CTCAATTGTAATTGCAAGGC+AGG | - | chr5_2:6993751-6993770 | Msa0753330:CDS | 40.0% | |
TGTACCACTACTAACTTGAC+AGG | - | chr5_2:6993865-6993884 | Msa0753330:CDS | 40.0% | |
TGTACCTGTCAAGTTAGTAG+TGG | + | chr5_2:6993872-6993891 | None:intergenic | 40.0% | |
ACTACTAACTTGACAGGTAC+AGG | - | chr5_2:6993871-6993890 | Msa0753330:CDS | 40.0% | |
ACTTGACAGGTACAGGAAAT+TGG | - | chr5_2:6993878-6993897 | Msa0753330:CDS | 40.0% | |
GTACAGGAAATTGGTAAAGC+CGG | - | chr5_2:6993887-6993906 | Msa0753330:CDS | 40.0% | |
TACAGGAAATTGGTAAAGCC+GGG | - | chr5_2:6993888-6993907 | Msa0753330:CDS | 40.0% | |
ATATGATCTTGTGCAAGCCA+TGG | + | chr5_2:6994047-6994066 | None:intergenic | 40.0% | |
GGCTTGCACAAGATCATATT+CGG | - | chr5_2:6994048-6994067 | Msa0753330:intron | 40.0% | |
TTGCACAAGATCATATTCGG+TGG | - | chr5_2:6994051-6994070 | Msa0753330:intron | 40.0% | |
CTAAGTGATGTGGGATCAAA+TGG | + | chr5_2:6994145-6994164 | None:intergenic | 40.0% | |
CATTTGATCCCACATCACTT+AGG | - | chr5_2:6994143-6994162 | Msa0753330:intron | 40.0% | |
AGAGGTGGGAAGATGAATAT+TGG | - | chr5_2:6994206-6994225 | Msa0753330:CDS | 40.0% | |
GTGCGTATGTATTTGCTCAT+TGG | + | chr5_2:6994240-6994259 | None:intergenic | 40.0% | |
!! | AGCTGTTTTCGGTTAGGAGA+AGG | + | chr5_2:6991372-6991391 | None:intergenic | 45.0% |
!! | CTAGGTAGCTGTTTTCGGTT+AGG | + | chr5_2:6991378-6991397 | None:intergenic | 45.0% |
! | CAGGAGTCTTTCTGAGAAGA+AGG | + | chr5_2:6991452-6991471 | None:intergenic | 45.0% |
! | AGAGAAGTGTAAAGAGTGGC+AGG | + | chr5_2:6991471-6991490 | None:intergenic | 45.0% |
TGCTTTCATCTCTTCCCTCT+GGG | - | chr5_2:6991518-6991537 | Msa0753330:CDS | 45.0% | |
GCGGAAATTAACTAACCCAG+AGG | + | chr5_2:6991536-6991555 | None:intergenic | 45.0% | |
CACCAGGATCGAATAAGTTG+TGG | + | chr5_2:6991738-6991757 | None:intergenic | 45.0% | |
CACAACTTATTCGATCCTGG+TGG | - | chr5_2:6991736-6991755 | Msa0753330:CDS | 45.0% | |
!! | GAAAACGGCGCATTTTAGGT+TGG | - | chr5_2:6992131-6992150 | Msa0753330:intron | 45.0% |
! | CACGTGATGTTTTCACCGTT+TGG | - | chr5_2:6992211-6992230 | Msa0753330:CDS | 45.0% |
! | CGTGATGTTTTCACCGTTTG+GGG | - | chr5_2:6992213-6992232 | Msa0753330:CDS | 45.0% |
! | GTGATGTTTTCACCGTTTGG+GGG | - | chr5_2:6992214-6992233 | Msa0753330:CDS | 45.0% |
CCCTGGTAAAATTCCAGACT+TGG | - | chr5_2:6992260-6992279 | Msa0753330:CDS | 45.0% | |
CAGTAACCAAAAACAGGTGG+TGG | + | chr5_2:6992336-6992355 | None:intergenic | 45.0% | |
GCACAGTAACCAAAAACAGG+TGG | + | chr5_2:6992339-6992358 | None:intergenic | 45.0% | |
ACATACATACCAACCCCAGA+AGG | + | chr5_2:6992400-6992419 | None:intergenic | 45.0% | |
TCCTTCAGAAGATGTTCCCA+AGG | + | chr5_2:6992945-6992964 | None:intergenic | 45.0% | |
AGTCGTGTTGCAGCAGTATA+AGG | + | chr5_2:6993035-6993054 | None:intergenic | 45.0% | |
ATGTTTCAACCGCACAGGAT+TGG | - | chr5_2:6993072-6993091 | Msa0753330:intron | 45.0% | |
CGAGGCTTCACTAATAGTGT+AGG | + | chr5_2:6993453-6993472 | None:intergenic | 45.0% | |
CCACAGGCTCACTAAATCTT+AGG | + | chr5_2:6993777-6993796 | None:intergenic | 45.0% | |
CCTAAGATTTAGTGAGCCTG+TGG | - | chr5_2:6993774-6993793 | Msa0753330:CDS | 45.0% | |
GATTTAGTGAGCCTGTGGTT+TGG | - | chr5_2:6993779-6993798 | Msa0753330:CDS | 45.0% | |
TTTGAGCCAAGAGTTCCTGA+AGG | - | chr5_2:6993998-6994017 | Msa0753330:intron | 45.0% | |
TGTAGAAGGTTCCCTAACCA+TGG | + | chr5_2:6994098-6994117 | None:intergenic | 45.0% | |
AGTGATGTGGGATCAAATGG+AGG | + | chr5_2:6994142-6994161 | None:intergenic | 45.0% | |
! | TAATCAACCGAGTTGAGAGG+TGG | - | chr5_2:6994191-6994210 | Msa0753330:intron | 45.0% |
! | AATCAACCGAGTTGAGAGGT+GGG | - | chr5_2:6994192-6994211 | Msa0753330:intron | 45.0% |
!! | TAAACTATATAAATATAATA+AGG | + | chr5_2:6992814-6992833 | None:intergenic | 5.0% |
TGATGGAGTGTGGAAGCTCT+AGG | + | chr5_2:6991396-6991415 | None:intergenic | 50.0% | |
AGATGAAAGCAGCGGTGATG+AGG | + | chr5_2:6991509-6991528 | None:intergenic | 50.0% | |
GAGGGAAGAGATGAAAGCAG+CGG | + | chr5_2:6991517-6991536 | None:intergenic | 50.0% | |
CTGCTTTCATCTCTTCCCTC+TGG | - | chr5_2:6991517-6991536 | Msa0753330:CDS | 50.0% | |
AGGTCTCAAGCCTTCACGAA+CGG | + | chr5_2:6991626-6991645 | None:intergenic | 50.0% | |
TTCGTGAAGGCTTGAGACCT+AGG | - | chr5_2:6991626-6991645 | Msa0753330:CDS | 50.0% | |
!! | CCTAGAAAGGAGGTGTTCCT+AGG | + | chr5_2:6991646-6991665 | None:intergenic | 50.0% |
CCTAGGAACACCTCCTTTCT+AGG | - | chr5_2:6991643-6991662 | Msa0753330:CDS | 50.0% | |
AGGCTTGAGACCTAGAAAGG+AGG | + | chr5_2:6991656-6991675 | None:intergenic | 50.0% | |
CAGAGGCTTGAGACCTAGAA+AGG | + | chr5_2:6991659-6991678 | None:intergenic | 50.0% | |
!!! | AACGGCGCATTTTAGGTTGG+TGG | - | chr5_2:6992134-6992153 | Msa0753330:intron | 50.0% |
TGATAAGCCTGTTGTGCCCA+TGG | - | chr5_2:6992302-6992321 | Msa0753330:CDS | 50.0% | |
GATAAGCCTGTTGTGCCCAT+GGG | - | chr5_2:6992303-6992322 | Msa0753330:CDS | 50.0% | |
! | TTGGTTACTGTGCTGATCGG+TGG | - | chr5_2:6992346-6992365 | Msa0753330:intron | 50.0% |
!! | TTTTCCCTGACTGGTCCTTC+TGG | - | chr5_2:6992382-6992401 | Msa0753330:intron | 50.0% |
! | TTTCCCTGACTGGTCCTTCT+GGG | - | chr5_2:6992383-6992402 | Msa0753330:intron | 50.0% |
GACCGTCGTCGACATAACAA+AGG | + | chr5_2:6992581-6992600 | None:intergenic | 50.0% | |
GCCTTGGGAACATCTTCTGA+AGG | - | chr5_2:6992941-6992960 | Msa0753330:intron | 50.0% | |
ACGGAGTTTCCAATCCTGTG+CGG | + | chr5_2:6993084-6993103 | None:intergenic | 50.0% | |
CATGATCAATGACGCGACCA+GGG | + | chr5_2:6993810-6993829 | None:intergenic | 50.0% | |
TGGCTCAAACTCGAGAAGCT+TGG | + | chr5_2:6993987-6994006 | None:intergenic | 50.0% | |
! | GGGCAAGGGTCTTTTGTAGA+AGG | + | chr5_2:6994112-6994131 | None:intergenic | 50.0% |
GATCAAATGGAGGAGGCAAG+GGG | + | chr5_2:6994132-6994151 | None:intergenic | 50.0% | |
GGATCAAATGGAGGAGGCAA+GGG | + | chr5_2:6994133-6994152 | None:intergenic | 50.0% | |
GATGTGGGATCAAATGGAGG+AGG | + | chr5_2:6994139-6994158 | None:intergenic | 50.0% | |
CATCTTCCCACCTCTCAACT+CGG | + | chr5_2:6994201-6994220 | None:intergenic | 50.0% | |
AAGCAGCGGTGATGAGGATG+AGG | + | chr5_2:6991503-6991522 | None:intergenic | 55.0% | |
GGTCTCAAGCCTTCACGAAC+GGG | + | chr5_2:6991625-6991644 | None:intergenic | 55.0% | |
CTTATTCGATCCTGGTGGCC+AGG | - | chr5_2:6991741-6991760 | Msa0753330:CDS | 55.0% | |
TAACTCGATACCTGGCCACC+AGG | + | chr5_2:6991754-6991773 | None:intergenic | 55.0% | |
! | TTGGGCCCACCACCTGTTTT+TGG | - | chr5_2:6992327-6992346 | Msa0753330:CDS | 55.0% |
! | TTCCCTGACTGGTCCTTCTG+GGG | - | chr5_2:6992384-6992403 | Msa0753330:intron | 55.0% |
AACCCCAGAAGGACCAGTCA+GGG | + | chr5_2:6992389-6992408 | None:intergenic | 55.0% | |
! | AGTGAGCCTGTGGTTTGGAC+CGG | - | chr5_2:6993784-6993803 | Msa0753330:CDS | 55.0% |
CCATGATCAATGACGCGACC+AGG | + | chr5_2:6993811-6993830 | None:intergenic | 55.0% | |
CCTGGTCGCGTCATTGATCA+TGG | - | chr5_2:6993808-6993827 | Msa0753330:CDS | 55.0% | |
ACGGCTCCTTCAGGAACTCT+TGG | + | chr5_2:6994007-6994026 | None:intergenic | 55.0% | |
AAGAGTTCCTGAAGGAGCCG+TGG | - | chr5_2:6994006-6994025 | Msa0753330:intron | 55.0% | |
TTGTGCAAGCCATGGTCTCC+GGG | + | chr5_2:6994039-6994058 | None:intergenic | 55.0% | |
CTTGTGCAAGCCATGGTCTC+CGG | + | chr5_2:6994040-6994059 | None:intergenic | 55.0% | |
GGGATCAAATGGAGGAGGCA+AGG | + | chr5_2:6994134-6994153 | None:intergenic | 55.0% | |
CCTGTTGTGCCCATGGGCTT+GGG | - | chr5_2:6992309-6992328 | Msa0753330:CDS | 60.0% | |
! | CTGTGCTGATCGGTGGACAC+AGG | - | chr5_2:6992353-6992372 | Msa0753330:intron | 60.0% |
CAACCCCAGAAGGACCAGTC+AGG | + | chr5_2:6992390-6992409 | None:intergenic | 60.0% | |
!! | CTGACTGGTCCTTCTGGGGT+TGG | - | chr5_2:6992388-6992407 | Msa0753330:intron | 60.0% |
ATCAATGACGCGACCAGGGC+CGG | + | chr5_2:6993806-6993825 | None:intergenic | 60.0% | |
CACATCTCCACGGCTCCTTC+AGG | + | chr5_2:6994016-6994035 | None:intergenic | 60.0% | |
ATGGAGGAGGCAAGGGGCAA+GGG | + | chr5_2:6994126-6994145 | None:intergenic | 60.0% | |
AATGGAGGAGGCAAGGGGCA+AGG | + | chr5_2:6994127-6994146 | None:intergenic | 60.0% | |
CGGGGTTGACCCGTTCGTGA+AGG | - | chr5_2:6991613-6991632 | Msa0753330:CDS | 65.0% | |
GCCTGTTGTGCCCATGGGCT+TGG | - | chr5_2:6992308-6992327 | Msa0753330:CDS | 65.0% | |
CCCAAGCCCATGGGCACAAC+AGG | + | chr5_2:6992312-6992331 | None:intergenic | 65.0% | |
AGGAGCCGTGGAGATGTGCC+CGG | - | chr5_2:6994018-6994037 | Msa0753330:intron | 65.0% | |
GGTCTCCGGGCACATCTCCA+CGG | + | chr5_2:6994026-6994045 | None:intergenic | 65.0% | |
GGAGATGTGCCCGGAGACCA+TGG | - | chr5_2:6994027-6994046 | Msa0753330:intron | 65.0% | |
!! | GGTGGTGGGCCCAAGCCCAT+GGG | + | chr5_2:6992321-6992340 | None:intergenic | 70.0% |
!! | AGGTGGTGGGCCCAAGCCCA+TGG | + | chr5_2:6992322-6992341 | None:intergenic | 70.0% |
CCAGGGCCGGTCCAAACCAC+AGG | + | chr5_2:6993793-6993812 | None:intergenic | 70.0% | |
! | CCTGTGGTTTGGACCGGCCC+TGG | - | chr5_2:6993790-6993809 | Msa0753330:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 6991268 | 6994465 | 6991268 | ID=Msa0753330;Name=Msa0753330 |
chr5_2 | mRNA | 6991268 | 6994465 | 6991268 | ID=Msa0753330-mRNA-1;Parent=Msa0753330;Name=Msa0753330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=158|1|1|1|1|1|6|222|508 |
chr5_2 | exon | 6991268 | 6991846 | 6991268 | ID=Msa0753330-mRNA-1:exon:3120;Parent=Msa0753330-mRNA-1 |
chr5_2 | exon | 6992140 | 6992350 | 6992140 | ID=Msa0753330-mRNA-1:exon:3119;Parent=Msa0753330-mRNA-1 |
chr5_2 | exon | 6992463 | 6992527 | 6992463 | ID=Msa0753330-mRNA-1:exon:3118;Parent=Msa0753330-mRNA-1 |
chr5_2 | exon | 6992618 | 6992810 | 6992618 | ID=Msa0753330-mRNA-1:exon:3117;Parent=Msa0753330-mRNA-1 |
chr5_2 | exon | 6993324 | 6993910 | 6993324 | ID=Msa0753330-mRNA-1:exon:3116;Parent=Msa0753330-mRNA-1 |
chr5_2 | exon | 6994194 | 6994465 | 6994194 | ID=Msa0753330-mRNA-1:exon:3115;Parent=Msa0753330-mRNA-1 |
chr5_2 | five_prime_UTR | 6994308 | 6994465 | 6994308 | ID=Msa0753330-mRNA-1:five_prime_utr;Parent=Msa0753330-mRNA-1 |
chr5_2 | CDS | 6994194 | 6994307 | 6994194 | ID=Msa0753330-mRNA-1:cds;Parent=Msa0753330-mRNA-1 |
chr5_2 | CDS | 6993324 | 6993910 | 6993324 | ID=Msa0753330-mRNA-1:cds;Parent=Msa0753330-mRNA-1 |
chr5_2 | CDS | 6992618 | 6992810 | 6992618 | ID=Msa0753330-mRNA-1:cds;Parent=Msa0753330-mRNA-1 |
chr5_2 | CDS | 6992463 | 6992527 | 6992463 | ID=Msa0753330-mRNA-1:cds;Parent=Msa0753330-mRNA-1 |
chr5_2 | CDS | 6992140 | 6992350 | 6992140 | ID=Msa0753330-mRNA-1:cds;Parent=Msa0753330-mRNA-1 |
chr5_2 | CDS | 6991490 | 6991846 | 6991490 | ID=Msa0753330-mRNA-1:cds;Parent=Msa0753330-mRNA-1 |
chr5_2 | three_prime_UTR | 6991268 | 6991489 | 6991268 | ID=Msa0753330-mRNA-1:three_prime_utr;Parent=Msa0753330-mRNA-1 |
Gene Sequence |
Protein sequence |