Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358030 | XP_003611113.1 | 92.982 | 513 | 25 | 3 | 1 | 513 | 1 | 502 | 0.0 | 959 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358030 | sp|Q8NBL1|PGLT1_HUMAN | 26.271 | 354 | 220 | 12 | 118 | 449 | 54 | 388 | 4.70e-26 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358030 | G7KDD6 | 92.982 | 513 | 25 | 3 | 1 | 513 | 1 | 502 | 0.0 | 959 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa1358030 | 0.816278 | 6.004798e-52 | -8.615850e-47 |
| Msa0008330 | Msa1358030 | 0.815078 | 1.111218e-51 | -8.615850e-47 |
| Msa0040190 | Msa1358030 | 0.801934 | 7.122819e-49 | -8.615850e-47 |
| Msa0070090 | Msa1358030 | 0.825389 | 4.815326e-54 | -8.615850e-47 |
| Msa0084090 | Msa1358030 | 0.810976 | 8.817772e-51 | -8.615850e-47 |
| Msa0089410 | Msa1358030 | 0.814587 | 1.427767e-51 | -8.615850e-47 |
| Msa0092750 | Msa1358030 | 0.815283 | 1.000728e-51 | -8.615850e-47 |
| Msa0096510 | Msa1358030 | 0.809782 | 1.596117e-50 | -8.615850e-47 |
| Msa1356730 | Msa1358030 | 0.825490 | 4.555747e-54 | -8.615850e-47 |
| Msa1358030 | Msa1384620 | 0.808540 | 2.945192e-50 | -8.615850e-47 |
| Msa1358030 | Msa1391600 | 0.807363 | 5.243552e-50 | -8.615850e-47 |
| Msa1358030 | Msa1397540 | 0.803488 | 3.404289e-49 | -8.615850e-47 |
| Msa1358030 | Msa1397550 | 0.816295 | 5.952014e-52 | -8.615850e-47 |
| Msa1358030 | Msa1413880 | 0.819625 | 1.052664e-52 | -8.615850e-47 |
| Msa1358030 | Msa1431240 | 0.817232 | 3.668720e-52 | -8.615850e-47 |
| Msa1358030 | Msa1433380 | 0.802501 | 5.445090e-49 | -8.615850e-47 |
| Msa1358030 | Msa1451780 | 0.819039 | 1.431532e-52 | -8.615850e-47 |
| Msa0607620 | Msa1358030 | 0.806784 | 6.952823e-50 | -8.615850e-47 |
| Msa0626890 | Msa1358030 | 0.818323 | 2.081279e-52 | -8.615850e-47 |
| Msa0648300 | Msa1358030 | 0.805762 | 1.141670e-49 | -8.615850e-47 |
| Msa0664110 | Msa1358030 | 0.804257 | 2.356461e-49 | -8.615850e-47 |
| Msa0664130 | Msa1358030 | 0.805062 | 1.600126e-49 | -8.615850e-47 |
| Msa0665010 | Msa1358030 | 0.808062 | 3.724056e-50 | -8.615850e-47 |
| Msa0714930 | Msa1358030 | 0.820526 | 6.548893e-53 | -8.615850e-47 |
| Msa0738600 | Msa1358030 | 0.812747 | 3.627712e-51 | -8.615850e-47 |
| Msa0748980 | Msa1358030 | 0.800489 | 1.407252e-48 | -8.615850e-47 |
| Msa0753330 | Msa1358030 | 0.898774 | 3.815221e-77 | -8.615850e-47 |
| Msa0795400 | Msa1358030 | 0.811347 | 7.328235e-51 | -8.615850e-47 |
| Msa0818950 | Msa1358030 | 0.818527 | 1.870979e-52 | -8.615850e-47 |
| Msa0825520 | Msa1358030 | 0.807863 | 4.105421e-50 | -8.615850e-47 |
| Msa0832560 | Msa1358030 | 0.993179 | 5.590530e-198 | -8.615850e-47 |
| Msa0839730 | Msa1358030 | 0.809485 | 1.848320e-50 | -8.615850e-47 |
| Msa0130250 | Msa1358030 | 0.807128 | 5.881133e-50 | -8.615850e-47 |
| Msa0136520 | Msa1358030 | 0.815380 | 9.522308e-52 | -8.615850e-47 |
| Msa0143360 | Msa1358030 | 0.804324 | 2.281532e-49 | -8.615850e-47 |
| Msa0148430 | Msa1358030 | 0.802940 | 4.420404e-49 | -8.615850e-47 |
| Msa0166580 | Msa1358030 | 0.812895 | 3.367716e-51 | -8.615850e-47 |
| Msa0201910 | Msa1358030 | 0.844395 | 7.763705e-59 | -8.615850e-47 |
| Msa0206600 | Msa1358030 | 0.813642 | 2.307966e-51 | -8.615850e-47 |
| Msa0207220 | Msa1358030 | 0.802384 | 5.756375e-49 | -8.615850e-47 |
| Msa1289340 | Msa1358030 | 0.816525 | 5.287996e-52 | -8.615850e-47 |
| Msa1329820 | Msa1358030 | 0.802466 | 5.535066e-49 | -8.615850e-47 |
| Msa0379720 | Msa1358030 | 0.828572 | 8.343869e-55 | -8.615850e-47 |
| Msa0429100 | Msa1358030 | 0.846258 | 2.432128e-59 | -8.615850e-47 |
| Msa0429130 | Msa1358030 | 0.828397 | 9.195245e-55 | -8.615850e-47 |
| Msa1008960 | Msa1358030 | 0.818063 | 2.383705e-52 | -8.615850e-47 |
| Msa1024140 | Msa1358030 | 0.805338 | 1.400978e-49 | -8.615850e-47 |
| Msa1031220 | Msa1358030 | 0.810650 | 1.037530e-50 | -8.615850e-47 |
| Msa1033670 | Msa1358030 | 0.823467 | 1.363683e-53 | -8.615850e-47 |
| Msa1042380 | Msa1358030 | 0.801872 | 7.335879e-49 | -8.615850e-47 |
| Msa1044450 | Msa1358030 | 0.818930 | 1.515655e-52 | -8.615850e-47 |
| Msa0244370 | Msa1358030 | 0.842782 | 2.095997e-58 | -8.615850e-47 |
| Msa0251140 | Msa1358030 | 0.804987 | 1.659126e-49 | -8.615850e-47 |
| Msa0253980 | Msa1358030 | 0.821185 | 4.617657e-53 | -8.615850e-47 |
| Msa0278080 | Msa1358030 | 0.807928 | 3.977393e-50 | -8.615850e-47 |
| Msa0282880 | Msa1358030 | 0.831348 | 1.756784e-55 | -8.615850e-47 |
| Msa0288280 | Msa1358030 | 0.802369 | 5.797310e-49 | -8.615850e-47 |
| Msa0317630 | Msa1358030 | 0.825348 | 4.922065e-54 | -8.615850e-47 |
| Msa0321180 | Msa1358030 | 0.823752 | 1.169206e-53 | -8.615850e-47 |
| Msa0321200 | Msa1358030 | 0.829110 | 6.181720e-55 | -8.615850e-47 |
| Msa0324390 | Msa1358030 | 0.837500 | 5.012534e-57 | -8.615850e-47 |
| Msa0324430 | Msa1358030 | 0.838811 | 2.304145e-57 | -8.615850e-47 |
| Msa0343460 | Msa1358030 | 0.803485 | 3.408447e-49 | -8.615850e-47 |
| Msa1125100 | Msa1358030 | 0.809309 | 2.017043e-50 | -8.615850e-47 |
| Msa1125150 | Msa1358030 | 0.806486 | 8.035166e-50 | -8.615850e-47 |
| Msa1161520 | Msa1358030 | 0.811317 | 7.437502e-51 | -8.615850e-47 |
| Msa1182400 | Msa1358030 | 0.800039 | 1.737322e-48 | -8.615850e-47 |
| Msa1203840 | Msa1358030 | 0.801627 | 8.233839e-49 | -8.615850e-47 |
| Msa1211370 | Msa1358030 | 0.809928 | 1.484888e-50 | -8.615850e-47 |
| Msa0513500 | Msa1358030 | 0.805688 | 1.183097e-49 | -8.615850e-47 |
| Msa0517300 | Msa1358030 | 0.803196 | 3.912574e-49 | -8.615850e-47 |
| Msa0520810 | Msa1358030 | 0.815150 | 1.071470e-51 | -8.615850e-47 |
| Msa0526570 | Msa1358030 | 0.805727 | 1.160797e-49 | -8.615850e-47 |
| Msa0569630 | Msa1358030 | 0.812178 | 4.831394e-51 | -8.615850e-47 |
| Msa0587060 | Msa1358030 | 0.820178 | 7.869376e-53 | -8.615850e-47 |
| Msa0864730 | Msa1358030 | 0.802963 | 4.372480e-49 | -8.615850e-47 |
| Msa0864750 | Msa1358030 | 0.801408 | 9.133808e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358030 | MtrunA17_Chr5g0397701 | 92.982 | 513 | 25 | 3 | 1 | 513 | 1 | 502 | 0.0 | 959 |
| Msa1358030 | MtrunA17_Chr8g0349371 | 59.408 | 473 | 177 | 6 | 49 | 511 | 26 | 493 | 0.0 | 590 |
| Msa1358030 | MtrunA17_Chr8g0349361 | 56.823 | 491 | 191 | 9 | 34 | 509 | 24 | 508 | 0.0 | 580 |
| Msa1358030 | MtrunA17_Chr6g0471441 | 60.880 | 432 | 156 | 5 | 88 | 510 | 75 | 502 | 0.0 | 561 |
| Msa1358030 | MtrunA17_Chr8g0349241 | 56.813 | 433 | 174 | 6 | 77 | 502 | 62 | 488 | 4.36e-179 | 512 |
| Msa1358030 | MtrunA17_Chr7g0247251 | 52.393 | 397 | 177 | 4 | 95 | 482 | 3 | 396 | 3.00e-162 | 466 |
| Msa1358030 | MtrunA17_Chr7g0247261 | 51.079 | 417 | 188 | 7 | 77 | 482 | 32 | 443 | 1.26e-160 | 463 |
| Msa1358030 | MtrunA17_Chr3g0104841 | 41.432 | 461 | 257 | 8 | 24 | 480 | 14 | 465 | 8.76e-125 | 372 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358030 | AT5G23850.1 | 60.230 | 435 | 158 | 5 | 87 | 509 | 103 | 534 | 0.0 | 563 |
| Msa1358030 | AT3G48980.2 | 57.955 | 440 | 166 | 6 | 87 | 510 | 102 | 538 | 0.0 | 557 |
| Msa1358030 | AT3G48980.1 | 57.955 | 440 | 166 | 6 | 87 | 510 | 96 | 532 | 0.0 | 557 |
| Msa1358030 | AT1G63420.1 | 54.257 | 505 | 200 | 7 | 27 | 510 | 81 | 575 | 0.0 | 554 |
| Msa1358030 | AT2G45830.4 | 49.899 | 497 | 221 | 7 | 20 | 508 | 37 | 513 | 0.0 | 524 |
| Msa1358030 | AT2G45830.1 | 49.899 | 497 | 221 | 7 | 20 | 508 | 37 | 513 | 0.0 | 524 |
| Msa1358030 | AT3G61270.1 | 56.368 | 424 | 175 | 4 | 94 | 511 | 74 | 493 | 0.0 | 520 |
| Msa1358030 | AT3G61270.2 | 57.560 | 377 | 151 | 3 | 141 | 511 | 1 | 374 | 8.85e-166 | 474 |
| Msa1358030 | AT2G45830.3 | 57.600 | 375 | 149 | 3 | 141 | 508 | 1 | 372 | 4.78e-165 | 473 |
| Msa1358030 | AT2G45830.6 | 57.600 | 375 | 149 | 3 | 141 | 508 | 1 | 372 | 4.78e-165 | 473 |
| Msa1358030 | AT2G45830.2 | 57.600 | 375 | 149 | 3 | 141 | 508 | 1 | 372 | 4.78e-165 | 473 |
| Msa1358030 | AT2G45830.5 | 57.600 | 375 | 149 | 3 | 141 | 508 | 1 | 372 | 4.78e-165 | 473 |
| Msa1358030 | AT3G61280.1 | 45.725 | 538 | 249 | 9 | 1 | 509 | 7 | 530 | 1.36e-164 | 477 |
| Msa1358030 | AT2G45840.1 | 50.691 | 434 | 193 | 5 | 88 | 510 | 92 | 515 | 4.77e-160 | 465 |
| Msa1358030 | AT3G61290.1 | 49.885 | 435 | 201 | 6 | 88 | 511 | 18 | 446 | 1.38e-153 | 446 |
| Msa1358030 | AT1G63420.2 | 62.540 | 315 | 105 | 3 | 93 | 396 | 145 | 457 | 1.65e-143 | 421 |
| Msa1358030 | AT1G07220.1 | 42.094 | 468 | 245 | 10 | 24 | 479 | 20 | 473 | 5.94e-131 | 390 |
| Msa1358030 | AT3G61280.2 | 43.333 | 360 | 162 | 8 | 1 | 332 | 7 | 352 | 1.92e-90 | 281 |
Find 122 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAGAACCTTATGCTTAT+TGG | 0.143284 | tig0016220:-164587 | Msa1358030:CDS |
| TGCAACATTATTGGCCTATA+AGG | 0.166068 | tig0016220:-164079 | Msa1358030:CDS |
| TACAGCCATTGCAACATTAT+TGG | 0.224609 | tig0016220:-164088 | Msa1358030:CDS |
| CATTTGTCAGTGTCCCTTAT+AGG | 0.257990 | tig0016220:+164065 | None:intergenic |
| GCCTGTTGTGCCCATGGGCT+TGG | 0.290931 | tig0016220:-165297 | Msa1358030:CDS |
| ACTTGACAGGTACAGGAAAT+TGG | 0.312878 | tig0016220:-163709 | Msa1358030:intron |
| TTTCCCTGACTGGTCCTTCT+GGG | 0.316015 | tig0016220:-165222 | Msa1358030:CDS |
| CCCAAGCCCATGGGCACAAC+AGG | 0.325244 | tig0016220:+165296 | None:intergenic |
| CACAGCTCCACGGCTCCTTC+AGG | 0.333183 | tig0016220:+163574 | None:intergenic |
| AATTACTGCTTGAACATGTT+TGG | 0.343612 | tig0016220:+165630 | None:intergenic |
| CCAATCAACTGCATGTTTGA+TGG | 0.347036 | tig0016220:+164037 | None:intergenic |
| AGGAACATTTGCTGCTACTA+AGG | 0.351381 | tig0016220:+165721 | None:intergenic |
| AGGGGAACAAAAGAGTAAAA+TGG | 0.354181 | tig0016220:-164614 | Msa1358030:CDS |
| TGGAATATTCATTTAGCAAA+TGG | 0.360170 | tig0016220:+163623 | None:intergenic |
| CCATCAAACATGCAGTTGAT+TGG | 0.367325 | tig0016220:-164037 | Msa1358030:CDS |
| CTGCTTTCATCTCTTCCCTC+AGG | 0.368068 | tig0016220:-166124 | Msa1358030:CDS |
| GCAACATTATTGGCCTATAA+GGG | 0.371026 | tig0016220:-164078 | Msa1358030:CDS |
| AGTCGTGTTGCAGCAGTATA+AGG | 0.373600 | tig0016220:+164555 | None:intergenic |
| CCTGTTGTGCCCATGGGCTT+GGG | 0.374284 | tig0016220:-165296 | Msa1358030:CDS |
| CATCAAACATGCAGTTGATT+GGG | 0.374429 | tig0016220:-164036 | Msa1358030:CDS |
| TTATGAGTGAATCCATGGTT+AGG | 0.390989 | tig0016220:-163504 | Msa1358030:CDS |
| AGAGGTGGGAAGATGAATAT+TGG | 0.400013 | tig0016220:-163381 | Msa1358030:CDS |
| TGAACATGTTTGGTTCTTGA+TGG | 0.403380 | tig0016220:+165640 | None:intergenic |
| TGGCTCAAACTTGAGAAGCT+TGG | 0.409168 | tig0016220:+163603 | None:intergenic |
| CATTTGCTGCTACTAAGGTT+TGG | 0.412482 | tig0016220:+165726 | None:intergenic |
| TTTATTAGTAATAATTCAAA+AGG | 0.415030 | tig0016220:-166325 | Msa1358030:five_prime_UTR |
| TTTCCTTTCCAATAAGCATA+AGG | 0.416388 | tig0016220:+164579 | None:intergenic |
| CTAAGTGATGTGGGATCAAA+TGG | 0.418582 | tig0016220:+163445 | None:intergenic |
| CTGAGACTAATATACGGCCT+TGG | 0.419735 | tig0016220:-164662 | Msa1358030:CDS |
| CTGACTGGTCCTTCTGGGGT+TGG | 0.423962 | tig0016220:-165217 | Msa1358030:intron |
| GGAGCTGTGCCCGGAGTCCA+TGG | 0.430729 | tig0016220:-163560 | Msa1358030:CDS |
| GAATGAATTCTGATGGAGTA+TGG | 0.430749 | tig0016220:+166241 | None:intergenic |
| TTTAACGTTGTTGTTGTTGT+CGG | 0.435800 | tig0016220:+165605 | None:intergenic |
| AGATACAAAGTTTATATTGA+AGG | 0.435834 | tig0016220:-164206 | Msa1358030:CDS |
| CCCTGGTAAAATTCCAGACT+TGG | 0.439877 | tig0016220:-165345 | Msa1358030:CDS |
| GGCTTGCACAAGATCATATT+CGG | 0.443269 | tig0016220:-163539 | Msa1358030:CDS |
| AAAAGGAATAACGAGAGAAA+TGG | 0.456201 | tig0016220:-165510 | Msa1358030:CDS |
| TGCTTTCATCTCTTCCCTCA+GGG | 0.457221 | tig0016220:-166123 | Msa1358030:intron |
| TCAGGGCTGAGACTAATATA+CGG | 0.461649 | tig0016220:-164668 | Msa1358030:intron |
| AGGTGGTGGGCCCAAGCCCA+TGG | 0.463656 | tig0016220:+165286 | None:intergenic |
| TCAAACATGAGTTCCAAGTC+TGG | 0.465096 | tig0016220:+165332 | None:intergenic |
| GGATCAAATGGAGGAGGCAA+GGG | 0.468934 | tig0016220:+163457 | None:intergenic |
| ACGGCTCCTTCAGGAACTCT+TGG | 0.477411 | tig0016220:+163583 | None:intergenic |
| ACTGTACCTGCGTAAATAAA+CGG | 0.480417 | tig0016220:+164487 | None:intergenic |
| TATGAGTGAATCCATGGTTA+GGG | 0.480560 | tig0016220:-163503 | Msa1358030:CDS |
| GTACAGGAAATTGGTAAAGC+CGG | 0.483609 | tig0016220:-163700 | Msa1358030:CDS |
| AATGGAGGAGGCAAGGGGCA+AGG | 0.487872 | tig0016220:+163463 | None:intergenic |
| TGAGACTAATATACGGCCTT+GGG | 0.487896 | tig0016220:-164661 | Msa1358030:CDS |
| CAACCCCAGAAGGACCAGTC+AGG | 0.488262 | tig0016220:+165218 | None:intergenic |
| AGAGAAGCGTAAAGAGTGGC+AGG | 0.489559 | tig0016220:+166176 | None:intergenic |
| ATGGAGGAGGCAAGGGGCAA+GGG | 0.489670 | tig0016220:+163464 | None:intergenic |
| TCTTCATGAATGAATTCTGA+TGG | 0.492019 | tig0016220:+166234 | None:intergenic |
| GAACCTTATGCTTATTGGAA+AGG | 0.492867 | tig0016220:-164582 | Msa1358030:CDS |
| ATGTTTCAACCGCACAGGAT+TGG | 0.493210 | tig0016220:-164515 | Msa1358030:CDS |
| GTGTGTATGTATTTGCTCAT+TGG | 0.493830 | tig0016220:+163350 | None:intergenic |
| CATTTGATCCCACATCACTT+AGG | 0.497579 | tig0016220:-163444 | Msa1358030:CDS |
| TGGCAGACCAATGTACATAT+AGG | 0.498282 | tig0016220:-164338 | Msa1358030:intron |
| TTCTTGAATAAACTTGCTCC+CGG | 0.505080 | tig0016220:+163681 | None:intergenic |
| TTGTAATGTTTCAACCGCAC+AGG | 0.505206 | tig0016220:-164520 | Msa1358030:CDS |
| GAAATTTATGAGTGAATCCA+TGG | 0.508746 | tig0016220:-163509 | Msa1358030:CDS |
| CAGGAGTCTTTCTGAGAAGA+AGG | 0.509789 | tig0016220:+166195 | None:intergenic |
| CGGTTGAAACATTACAATTG+AGG | 0.511958 | tig0016220:+164526 | None:intergenic |
| AGGAATAACGAGAGAAATGG+TGG | 0.512055 | tig0016220:-165507 | Msa1358030:CDS |
| TACAGGAAATTGGTAAAGCC+GGG | 0.515192 | tig0016220:-163699 | Msa1358030:CDS |
| TTGTGCAAGCCATGGACTCC+GGG | 0.515594 | tig0016220:+163551 | None:intergenic |
| GAGGCTTCACTAATAGTGTA+GGG | 0.515936 | tig0016220:+164138 | None:intergenic |
| AGGAGCCGTGGAGCTGTGCC+CGG | 0.516718 | tig0016220:-163569 | Msa1358030:CDS |
| CTTGTGCAAGCCATGGACTC+CGG | 0.517853 | tig0016220:+163550 | None:intergenic |
| ATGGTACAATTCAGTACTGT+TGG | 0.518317 | tig0016220:+165659 | None:intergenic |
| CGAGGCTTCACTAATAGTGT+AGG | 0.521509 | tig0016220:+164137 | None:intergenic |
| CATCTTCCCACCTCTCAACT+CGG | 0.523375 | tig0016220:+163389 | None:intergenic |
| TGATAAGCCTGTTGTGCCCA+TGG | 0.523385 | tig0016220:-165303 | Msa1358030:CDS |
| TATGTCCGGAGTATTTCAAA+TGG | 0.530428 | tig0016220:-165562 | Msa1358030:CDS |
| GGGATCAAATGGAGGAGGCA+AGG | 0.532099 | tig0016220:+163456 | None:intergenic |
| TTCCCTGACTGGTCCTTCTG+GGG | 0.537571 | tig0016220:-165221 | Msa1358030:CDS |
| AGGATTCAATCACTCAAACT+TGG | 0.539657 | tig0016220:-164358 | Msa1358030:CDS |
| CAGCGGCGGTGATGAGGATG+AGG | 0.541321 | tig0016220:+166144 | None:intergenic |
| TAGCAATGCAAATAGTAAGC+TGG | 0.553109 | tig0016220:-163308 | Msa1358030:three_prime_UTR |
| TTTGTATTTCTATAACTCAA+AGG | 0.553445 | tig0016220:+163250 | None:intergenic |
| TAATAGTGTAGGGGAATCAC+AGG | 0.553816 | tig0016220:+164148 | None:intergenic |
| ATATGATCTTGTGCAAGCCA+TGG | 0.555321 | tig0016220:+163543 | None:intergenic |
| GGTGGAGAAAGCAAAGAAAA+CGG | 0.555442 | tig0016220:-165489 | Msa1358030:CDS |
| TAATCAACCGAGTTGAGAGG+TGG | 0.563561 | tig0016220:-163396 | Msa1358030:CDS |
| TGAAAGCAGCGGCGGTGATG+AGG | 0.565142 | tig0016220:+166138 | None:intergenic |
| TGTAGAAGGTTCCCTAACCA+TGG | 0.568492 | tig0016220:+163492 | None:intergenic |
| GGAACTACCTATATGTACAT+TGG | 0.572220 | tig0016220:+164331 | None:intergenic |
| AAGAGTTCCTGAAGGAGCCG+TGG | 0.572482 | tig0016220:-163581 | Msa1358030:CDS |
| GGTGGTGGGCCCAAGCCCAT+GGG | 0.576300 | tig0016220:+165287 | None:intergenic |
| TTCACGAGGATCTAAAACCA+TGG | 0.579924 | tig0016220:-165538 | Msa1358030:CDS |
| AATAATGTTGCAATGGCTGT+AGG | 0.584450 | tig0016220:+164090 | None:intergenic |
| ATCAAACATGCAGTTGATTG+GGG | 0.586497 | tig0016220:-164035 | Msa1358030:CDS |
| TGAATCCATTTGAAATACTC+CGG | 0.590414 | tig0016220:+165557 | None:intergenic |
| TGGATTAAAGAGTCTGAACA+AGG | 0.592715 | tig0016220:-164378 | Msa1358030:CDS |
| ATAGGCCAATAATGTTGCAA+TGG | 0.599822 | tig0016220:+164083 | None:intergenic |
| GGACTCCGGGCACAGCTCCA+CGG | 0.602661 | tig0016220:+163564 | None:intergenic |
| ATTTAATCAACCGAGTTGAG+AGG | 0.603531 | tig0016220:-163399 | Msa1358030:CDS |
| TTGGTTACTGTGCTGATCGG+TGG | 0.603838 | tig0016220:-165259 | Msa1358030:CDS |
| GCCTTGGGAACATCTTCTGA+AGG | 0.606053 | tig0016220:-164646 | Msa1358030:CDS |
| AACCCCAGAAGGACCAGTCA+GGG | 0.609191 | tig0016220:+165219 | None:intergenic |
| GAGAAGAGAAGCGTAAAGAG+TGG | 0.611727 | tig0016220:+166172 | None:intergenic |
| TGATGGAGTATGGAAGCTCT+AGG | 0.611866 | tig0016220:+166251 | None:intergenic |
| TCCTTCAGAAGATGTTCCCA+AGG | 0.613175 | tig0016220:+164645 | None:intergenic |
| CGGAAATTAACTAACCCTGA+GGG | 0.619210 | tig0016220:+166109 | None:intergenic |
| CTGTGCTGATCGGTGGACAC+AGG | 0.621325 | tig0016220:-165252 | Msa1358030:CDS |
| GATCAAATGGAGGAGGCAAG+GGG | 0.622941 | tig0016220:+163458 | None:intergenic |
| GATGTGGGATCAAATGGAGG+AGG | 0.623679 | tig0016220:+163451 | None:intergenic |
| TTTGAGCCAAGAGTTCCTGA+AGG | 0.639566 | tig0016220:-163589 | Msa1358030:CDS |
| AATCAACCGAGTTGAGAGGT+GGG | 0.639972 | tig0016220:-163395 | Msa1358030:CDS |
| GATAAGCCTGTTGTGCCCAT+GGG | 0.642853 | tig0016220:-165302 | Msa1358030:CDS |
| GGAAGAGATGAAAGCAGCGG+CGG | 0.643188 | tig0016220:+166130 | None:intergenic |
| GAAACTCCGTTTATTTACGC+AGG | 0.643555 | tig0016220:-164493 | Msa1358030:intron |
| ACATACATACCAACCCCAGA+AGG | 0.644873 | tig0016220:+165208 | None:intergenic |
| GAGGGAAGAGATGAAAGCAG+CGG | 0.655130 | tig0016220:+166127 | None:intergenic |
| TATTCAAGAAGAGCTCAACA+TGG | 0.666732 | tig0016220:-163668 | Msa1358030:CDS |
| GTGAAGAAATCGTAGTATCG+AGG | 0.668956 | tig0016220:+164119 | None:intergenic |
| AGTGATGTGGGATCAAATGG+AGG | 0.680524 | tig0016220:+163448 | None:intergenic |
| AGGCTTCACTAATAGTGTAG+GGG | 0.685668 | tig0016220:+164139 | None:intergenic |
| TTTATATTGAAGGATACGCG+TGG | 0.686560 | tig0016220:-164196 | Msa1358030:CDS |
| TTGCACAAGATCATATTCGG+TGG | 0.699977 | tig0016220:-163536 | Msa1358030:CDS |
| CAATTACTGAGAAAGTACCC+TGG | 0.713086 | tig0016220:-165362 | Msa1358030:CDS |
| GTATTTCAAATGGATTCACG+AGG | 0.719253 | tig0016220:-165552 | Msa1358030:CDS |
| ACGGAGTTTCCAATCCTGTG+CGG | 0.723022 | tig0016220:+164506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAGTAATAATTCAAA+AGG | - | tig0016220:163192-163211 | Msa1358030:three_prime_UTR | 10.0% |
| !!! | GACATATTTTATATATTTTA+TGG | - | tig0016220:164715-164734 | Msa1358030:intron | 10.0% |
| !! | AACAATGTAATTTACTTAAT+CGG | - | tig0016220:163485-163504 | Msa1358030:CDS | 15.0% |
| !! | TAAATCTAATAATGATGTAT+AGG | + | tig0016220:163598-163617 | None:intergenic | 15.0% |
| !!! | AAACAGTTTAATCTATTTTT+TGG | - | tig0016220:163685-163704 | Msa1358030:CDS | 15.0% |
| !!! | AAGTCTTCTTTGTTTTATTA+AGG | - | tig0016220:163145-163164 | Msa1358030:three_prime_UTR | 20.0% |
| !!! | AGTCTTCTTTGTTTTATTAA+GGG | - | tig0016220:163146-163165 | Msa1358030:three_prime_UTR | 20.0% |
| !! | TTAATTGAGAAAATTGTGTA+GGG | + | tig0016220:163467-163486 | None:intergenic | 20.0% |
| !! | ACAATGTAATTTACTTAATC+GGG | - | tig0016220:163486-163505 | Msa1358030:CDS | 20.0% |
| !! | ACATCATTATTAGATTTAGA+TGG | - | tig0016220:163600-163619 | Msa1358030:CDS | 20.0% |
| !!! | TTTATTTTTTCATTCTTCGT+AGG | + | tig0016220:163819-163838 | None:intergenic | 20.0% |
| !! | AGAATGAAAAAATAAAACAG+AGG | - | tig0016220:163823-163842 | Msa1358030:intron | 20.0% |
| !! | AAAAACAACAAAAAACAACA+TGG | - | tig0016220:163932-163951 | Msa1358030:intron | 20.0% |
| !! | ATCCAAATAACATAAAAATG+GGG | + | tig0016220:164385-164404 | None:intergenic | 20.0% |
| !! | GATCCAAATAACATAAAAAT+GGG | + | tig0016220:164386-164405 | None:intergenic | 20.0% |
| !! | TACATTAATCAACAACTATA+TGG | + | tig0016220:164408-164427 | None:intergenic | 20.0% |
| !!! | ATATAGTTGTTGATTAATGT+AGG | - | tig0016220:164407-164426 | Msa1358030:intron | 20.0% |
| !! | ACTATAGTTTATTATCTCTA+TGG | + | tig0016220:164547-164566 | None:intergenic | 20.0% |
| !! | TAGTTTAAGTACTAATTTCA+TGG | - | tig0016220:164788-164807 | Msa1358030:intron | 20.0% |
| !!! | AAATGCAATGTTTTTATTTC+AGG | - | tig0016220:164831-164850 | Msa1358030:intron | 20.0% |
| !!! | AATGCAATGTTTTTATTTCA+GGG | - | tig0016220:164832-164851 | Msa1358030:intron | 20.0% |
| !!! | ATATTTTGTCACAAATATGT+AGG | - | tig0016220:165114-165133 | Msa1358030:intron | 20.0% |
| !!! | AAATGTACATGATGAATTTT+GGG | + | tig0016220:165250-165269 | None:intergenic | 20.0% |
| !!! | TAAATGTACATGATGAATTT+TGG | + | tig0016220:165251-165270 | None:intergenic | 20.0% |
| !! | AGATACAAAGTTTATATTGA+AGG | - | tig0016220:165311-165330 | Msa1358030:CDS | 20.0% |
| !!! | TTTGTATTTCTATAACTCAA+AGG | + | tig0016220:166270-166289 | None:intergenic | 20.0% |
| !!! | TTGTTTTATTAAGGGTCTTT+TGG | - | tig0016220:163154-163173 | Msa1358030:three_prime_UTR | 25.0% |
| ! | AATGAATGAGTGTAATTAAG+CGG | + | tig0016220:163431-163450 | None:intergenic | 25.0% |
| ! | GTTAATTGAGAAAATTGTGT+AGG | + | tig0016220:163468-163487 | None:intergenic | 25.0% |
| ! | CAATGTAATTTACTTAATCG+GGG | - | tig0016220:163487-163506 | Msa1358030:CDS | 25.0% |
| ! | TCATTATTAGATTTAGATGG+CGG | - | tig0016220:163603-163622 | Msa1358030:CDS | 25.0% |
| !!! | TTTTTTTTTAACTCGATACC+TGG | + | tig0016220:163660-163679 | None:intergenic | 25.0% |
| ! | AAACAAGTAGAATTGTGTTT+AGG | + | tig0016220:164336-164355 | None:intergenic | 25.0% |
| ! | GGATCCAAATAACATAAAAA+TGG | + | tig0016220:164387-164406 | None:intergenic | 25.0% |
| !! | ATAATCACATTTTCTTGTCT+GGG | + | tig0016220:164471-164490 | None:intergenic | 25.0% |
| !! | AATAATCACATTTTCTTGTC+TGG | + | tig0016220:164472-164491 | None:intergenic | 25.0% |
| !! | TCTTCTGAAGGATATAAAAA+AGG | - | tig0016220:164883-164902 | Msa1358030:intron | 25.0% |
| !! | CTTCTGAAGGATATAAAAAA+GGG | - | tig0016220:164884-164903 | Msa1358030:intron | 25.0% |
| !! | TTCTGAAGGATATAAAAAAG+GGG | - | tig0016220:164885-164904 | Msa1358030:intron | 25.0% |
| !! | ATATGTGATCTGAGATTAAA+TGG | + | tig0016220:165210-165229 | None:intergenic | 25.0% |
| ! | AAACTTTGTATCTGATATCA+AGG | + | tig0016220:165304-165323 | None:intergenic | 25.0% |
| !! | TTTAAGACAAATGAATGACA+AGG | + | tig0016220:165561-165580 | None:intergenic | 25.0% |
| ! | AGTAGTAAAGATTTAAATCG+TGG | - | tig0016220:165609-165628 | Msa1358030:CDS | 25.0% |
| !!! | ATCTTAGTCAAATGTTTTTG+AGG | - | tig0016220:165654-165673 | Msa1358030:CDS | 25.0% |
| ! | TGGAATATTCATTTAGCAAA+TGG | + | tig0016220:165897-165916 | None:intergenic | 25.0% |
| ! | TAAAAAATCCTAAGTGATGT+GGG | + | tig0016220:166084-166103 | None:intergenic | 25.0% |
| ! | ATAAAAAATCCTAAGTGATG+TGG | + | tig0016220:166085-166104 | None:intergenic | 25.0% |
| TCTTCATGAATGAATTCTGA+TGG | + | tig0016220:163286-163305 | None:intergenic | 30.0% | |
| CATTATTAGATTTAGATGGC+GGG | - | tig0016220:163604-163623 | Msa1358030:CDS | 30.0% | |
| AATTACTGCTTGAACATGTT+TGG | + | tig0016220:163890-163909 | None:intergenic | 30.0% | |
| ! | TTTAACGTTGTTGTTGTTGT+CGG | + | tig0016220:163915-163934 | None:intergenic | 30.0% |
| AAAAAACAACATGGTATGTC+CGG | - | tig0016220:163941-163960 | Msa1358030:intron | 30.0% | |
| ! | TGAATCCATTTGAAATACTC+CGG | + | tig0016220:163963-163982 | None:intergenic | 30.0% |
| CTAAAACCATGGAAGAAAAA+AGG | - | tig0016220:163990-164009 | Msa1358030:intron | 30.0% | |
| !!! | GTTATTCCTTTTTTCTTCCA+TGG | + | tig0016220:163999-164018 | None:intergenic | 30.0% |
| AAAAGGAATAACGAGAGAAA+TGG | - | tig0016220:164007-164026 | Msa1358030:intron | 30.0% | |
| TCATTGTCATTCAAAGTTTG+TGG | - | tig0016220:164430-164449 | Msa1358030:intron | 30.0% | |
| AGAGATAATAACTAACCAAC+TGG | + | tig0016220:164521-164540 | None:intergenic | 30.0% | |
| !! | ATTGTTGCTTCTAAGATGTA+GGG | + | tig0016220:164689-164708 | None:intergenic | 30.0% |
| !! | AATTGTTGCTTCTAAGATGT+AGG | + | tig0016220:164690-164709 | None:intergenic | 30.0% |
| TTTCCTTTCCAATAAGCATA+AGG | + | tig0016220:164941-164960 | None:intergenic | 30.0% | |
| TACAGTACAGACATATCTAA+AGG | - | tig0016220:165047-165066 | Msa1358030:intron | 30.0% | |
| TTGTCACAAATATGTAGGAT+TGG | - | tig0016220:165119-165138 | Msa1358030:intron | 30.0% | |
| GTGGTTATGATATTATATCG+CGG | - | tig0016220:165628-165647 | Msa1358030:CDS | 30.0% | |
| GAAATTTATGAGTGAATCCA+TGG | - | tig0016220:166008-166027 | Msa1358030:intron | 30.0% | |
| !! | AGCTGTTTTCAGTTAGAAGA+AGG | + | tig0016220:163245-163264 | None:intergenic | 35.0% |
| GAATGAATTCTGATGGAGTA+TGG | + | tig0016220:163279-163298 | None:intergenic | 35.0% | |
| AACACATGAATTGTTAGCAG+AGG | + | tig0016220:163568-163587 | None:intergenic | 35.0% | |
| TCTGCTAACAATTCATGTGT+TGG | - | tig0016220:163567-163586 | Msa1358030:CDS | 35.0% | |
| CTGCTAACAATTCATGTGTT+GGG | - | tig0016220:163568-163587 | Msa1358030:CDS | 35.0% | |
| ! | GTTGTTGTTGTTGTTGTTGT+TGG | + | tig0016220:163756-163775 | None:intergenic | 35.0% |
| ATGGTACAATTCAGTACTGT+TGG | + | tig0016220:163861-163880 | None:intergenic | 35.0% | |
| !! | TGAACATGTTTGGTTCTTGA+TGG | + | tig0016220:163880-163899 | None:intergenic | 35.0% |
| ! | TATGTCCGGAGTATTTCAAA+TGG | - | tig0016220:163955-163974 | Msa1358030:intron | 35.0% |
| ! | GTATTTCAAATGGATTCACG+AGG | - | tig0016220:163965-163984 | Msa1358030:intron | 35.0% |
| !! | TTTAGGTTGGTGGTGAAAAA+TGG | - | tig0016220:164056-164075 | Msa1358030:CDS | 35.0% |
| !! | TTGGTGGTGAAAAATGGAAA+AGG | - | tig0016220:164062-164081 | Msa1358030:CDS | 35.0% |
| ! | TGGTGGTGAAAAATGGAAAA+GGG | - | tig0016220:164063-164082 | Msa1358030:CDS | 35.0% |
| !!! | TTTTTGGTTACTGTGCTGAT+CGG | - | tig0016220:164255-164274 | Msa1358030:intron | 35.0% |
| !! | GGCCCCATTTTTATGTTATT+TGG | - | tig0016220:164380-164399 | Msa1358030:CDS | 35.0% |
| ! | TCATACCTTTGTTATGTCGA+CGG | - | tig0016220:164494-164513 | Msa1358030:CDS | 35.0% |
| GATGTAGGGAACAAAATTGA+CGG | + | tig0016220:164675-164694 | None:intergenic | 35.0% | |
| AGGGGAACAAAAGAGTAAAA+TGG | - | tig0016220:164903-164922 | Msa1358030:intron | 35.0% | |
| ACAGAGAACCTTATGCTTAT+TGG | - | tig0016220:164930-164949 | Msa1358030:intron | 35.0% | |
| GAACCTTATGCTTATTGGAA+AGG | - | tig0016220:164935-164954 | Msa1358030:intron | 35.0% | |
| CGGTTGAAACATTACAATTG+AGG | + | tig0016220:164994-165013 | None:intergenic | 35.0% | |
| ACTGTACCTGCGTAAATAAA+CGG | + | tig0016220:165033-165052 | None:intergenic | 35.0% | |
| TGGATTAAAGAGTCTGAACA+AGG | - | tig0016220:165139-165158 | Msa1358030:intron | 35.0% | |
| AGGATTCAATCACTCAAACT+TGG | - | tig0016220:165159-165178 | Msa1358030:intron | 35.0% | |
| GGAACTACCTATATGTACAT+TGG | + | tig0016220:165189-165208 | None:intergenic | 35.0% | |
| TTTATATTGAAGGATACGCG+TGG | - | tig0016220:165321-165340 | Msa1358030:CDS | 35.0% | |
| AATAATGTTGCAATGGCTGT+AGG | + | tig0016220:165430-165449 | None:intergenic | 35.0% | |
| TACAGCCATTGCAACATTAT+TGG | - | tig0016220:165429-165448 | Msa1358030:CDS | 35.0% | |
| ATAGGCCAATAATGTTGCAA+TGG | + | tig0016220:165437-165456 | None:intergenic | 35.0% | |
| ! | TGCAACATTATTGGCCTATA+AGG | - | tig0016220:165438-165457 | Msa1358030:CDS | 35.0% |
| ! | GCAACATTATTGGCCTATAA+GGG | - | tig0016220:165439-165458 | Msa1358030:CDS | 35.0% |
| CATCAAACATGCAGTTGATT+GGG | - | tig0016220:165481-165500 | Msa1358030:CDS | 35.0% | |
| ATCAAACATGCAGTTGATTG+GGG | - | tig0016220:165482-165501 | Msa1358030:CDS | 35.0% | |
| GAATATCGAAAGATATGCGA+TGG | + | tig0016220:165539-165558 | None:intergenic | 35.0% | |
| CAACCTCAATTGTAATTGCA+AGG | - | tig0016220:165677-165696 | Msa1358030:CDS | 35.0% | |
| ! | TTCTTGAATAAACTTGCTCC+CGG | + | tig0016220:165839-165858 | None:intergenic | 35.0% |
| TATTCAAGAAGAGCTCAACA+TGG | - | tig0016220:165849-165868 | Msa1358030:intron | 35.0% | |
| TTATGAGTGAATCCATGGTT+AGG | - | tig0016220:166013-166032 | Msa1358030:intron | 35.0% | |
| TATGAGTGAATCCATGGTTA+GGG | - | tig0016220:166014-166033 | Msa1358030:intron | 35.0% | |
| ! | ATTTAATCAACCGAGTTGAG+AGG | - | tig0016220:166118-166137 | Msa1358030:intron | 35.0% |
| GTGTGTATGTATTTGCTCAT+TGG | + | tig0016220:166170-166189 | None:intergenic | 35.0% | |
| TAGCAATGCAAATAGTAAGC+TGG | - | tig0016220:166209-166228 | Msa1358030:CDS | 35.0% | |
| CGGAAATTAACTAACCCTGA+GGG | + | tig0016220:163411-163430 | None:intergenic | 40.0% | |
| TTCCACAACTTATTCGATCC+TGG | - | tig0016220:163631-163650 | Msa1358030:CDS | 40.0% | |
| ! | CATTTGCTGCTACTAAGGTT+TGG | + | tig0016220:163794-163813 | None:intergenic | 40.0% |
| ! | AGGAACATTTGCTGCTACTA+AGG | + | tig0016220:163799-163818 | None:intergenic | 40.0% |
| ! | TTCACGAGGATCTAAAACCA+TGG | - | tig0016220:163979-163998 | Msa1358030:intron | 40.0% |
| AGGAATAACGAGAGAAATGG+TGG | - | tig0016220:164010-164029 | Msa1358030:intron | 40.0% | |
| GGTGGAGAAAGCAAAGAAAA+CGG | - | tig0016220:164028-164047 | Msa1358030:CDS | 40.0% | |
| ! | CAAAGAAAACGGCGCATTTT+AGG | - | tig0016220:164039-164058 | Msa1358030:CDS | 40.0% |
| ! | ACGTGATGTTTTCACCGTTT+GGG | - | tig0016220:164124-164143 | Msa1358030:CDS | 40.0% |
| TAATTGCAGAATCCCCCAAA+CGG | + | tig0016220:164141-164160 | None:intergenic | 40.0% | |
| !! | CAATTACTGAGAAAGTACCC+TGG | - | tig0016220:164155-164174 | Msa1358030:CDS | 40.0% |
| !! | CCAAGTCTGGAATTTTACCA+GGG | + | tig0016220:164175-164194 | None:intergenic | 40.0% |
| !! | TCCAAGTCTGGAATTTTACC+AGG | + | tig0016220:164176-164195 | None:intergenic | 40.0% |
| TCAAACATGAGTTCCAAGTC+TGG | + | tig0016220:164188-164207 | None:intergenic | 40.0% | |
| AGTAACCAAAAACAGGTGGT+GGG | + | tig0016220:164247-164266 | None:intergenic | 40.0% | |
| TCAGCACAGTAACCAAAAAC+AGG | + | tig0016220:164254-164273 | None:intergenic | 40.0% | |
| ! | AGGATATTGTTTTCCCTGAC+TGG | - | tig0016220:164285-164304 | Msa1358030:intron | 40.0% |
| TAATTCTCGTGAAGCATGCT+TGG | - | tig0016220:164359-164378 | Msa1358030:CDS | 40.0% | |
| TCAGGGCTGAGACTAATATA+CGG | - | tig0016220:164849-164868 | Msa1358030:intron | 40.0% | |
| TGAGACTAATATACGGCCTT+GGG | - | tig0016220:164856-164875 | Msa1358030:intron | 40.0% | |
| TTGTAATGTTTCAACCGCAC+AGG | - | tig0016220:164997-165016 | Msa1358030:intron | 40.0% | |
| GAAACTCCGTTTATTTACGC+AGG | - | tig0016220:165024-165043 | Msa1358030:intron | 40.0% | |
| TGGCAGACCAATGTACATAT+AGG | - | tig0016220:165179-165198 | Msa1358030:intron | 40.0% | |
| TAATAGTGTAGGGGAATCAC+AGG | + | tig0016220:165372-165391 | None:intergenic | 40.0% | |
| AGGCTTCACTAATAGTGTAG+GGG | + | tig0016220:165381-165400 | None:intergenic | 40.0% | |
| GAGGCTTCACTAATAGTGTA+GGG | + | tig0016220:165382-165401 | None:intergenic | 40.0% | |
| GTGAAGAAATCGTAGTATCG+AGG | + | tig0016220:165401-165420 | None:intergenic | 40.0% | |
| CATTTGTCAGTGTCCCTTAT+AGG | + | tig0016220:165455-165474 | None:intergenic | 40.0% | |
| CCAATCAACTGCATGTTTGA+TGG | + | tig0016220:165483-165502 | None:intergenic | 40.0% | |
| CCATCAAACATGCAGTTGAT+TGG | - | tig0016220:165480-165499 | Msa1358030:CDS | 40.0% | |
| ! | CAAGAAGCATACACGGTATA+TGG | + | tig0016220:165587-165606 | None:intergenic | 40.0% |
| ! | CTACTGTCAAGAAGCATACA+CGG | + | tig0016220:165594-165613 | None:intergenic | 40.0% |
| CTGCCTTGCAATTACAATTG+AGG | + | tig0016220:165683-165702 | None:intergenic | 40.0% | |
| CTCAATTGTAATTGCAAGGC+AGG | - | tig0016220:165681-165700 | Msa1358030:CDS | 40.0% | |
| TGTACCACTACTAACTTGAC+AGG | - | tig0016220:165795-165814 | Msa1358030:CDS | 40.0% | |
| TGTACCTGTCAAGTTAGTAG+TGG | + | tig0016220:165802-165821 | None:intergenic | 40.0% | |
| ACTACTAACTTGACAGGTAC+AGG | - | tig0016220:165801-165820 | Msa1358030:intron | 40.0% | |
| ACTTGACAGGTACAGGAAAT+TGG | - | tig0016220:165808-165827 | Msa1358030:intron | 40.0% | |
| GTACAGGAAATTGGTAAAGC+CGG | - | tig0016220:165817-165836 | Msa1358030:intron | 40.0% | |
| TACAGGAAATTGGTAAAGCC+GGG | - | tig0016220:165818-165837 | Msa1358030:intron | 40.0% | |
| ATATGATCTTGTGCAAGCCA+TGG | + | tig0016220:165977-165996 | None:intergenic | 40.0% | |
| GGCTTGCACAAGATCATATT+CGG | - | tig0016220:165978-165997 | Msa1358030:intron | 40.0% | |
| TTGCACAAGATCATATTCGG+TGG | - | tig0016220:165981-166000 | Msa1358030:intron | 40.0% | |
| CTAAGTGATGTGGGATCAAA+TGG | + | tig0016220:166075-166094 | None:intergenic | 40.0% | |
| CATTTGATCCCACATCACTT+AGG | - | tig0016220:166073-166092 | Msa1358030:intron | 40.0% | |
| AGAGGTGGGAAGATGAATAT+TGG | - | tig0016220:166136-166155 | Msa1358030:CDS | 40.0% | |
| TGATGGAGTATGGAAGCTCT+AGG | + | tig0016220:163269-163288 | None:intergenic | 45.0% | |
| ! | CAGGAGTCTTTCTGAGAAGA+AGG | + | tig0016220:163325-163344 | None:intergenic | 45.0% |
| ! | GAGAAGAGAAGCGTAAAGAG+TGG | + | tig0016220:163348-163367 | None:intergenic | 45.0% |
| TGCTTTCATCTCTTCCCTCA+GGG | - | tig0016220:163394-163413 | Msa1358030:CDS | 45.0% | |
| GCGGAAATTAACTAACCCTG+AGG | + | tig0016220:163412-163431 | None:intergenic | 45.0% | |
| !! | CCTAGAAAGGAGGTGTTCTT+AGG | + | tig0016220:163538-163557 | None:intergenic | 45.0% |
| CCTAAGAACACCTCCTTTCT+AGG | - | tig0016220:163535-163554 | Msa1358030:CDS | 45.0% | |
| CACCAGGATCGAATAAGTTG+TGG | + | tig0016220:163636-163655 | None:intergenic | 45.0% | |
| CACAACTTATTCGATCCTGG+TGG | - | tig0016220:163634-163653 | Msa1358030:CDS | 45.0% | |
| !! | GAAAACGGCGCATTTTAGGT+TGG | - | tig0016220:164043-164062 | Msa1358030:CDS | 45.0% |
| ! | CACGTGATGTTTTCACCGTT+TGG | - | tig0016220:164123-164142 | Msa1358030:CDS | 45.0% |
| ! | CGTGATGTTTTCACCGTTTG+GGG | - | tig0016220:164125-164144 | Msa1358030:CDS | 45.0% |
| ! | GTGATGTTTTCACCGTTTGG+GGG | - | tig0016220:164126-164145 | Msa1358030:CDS | 45.0% |
| CCCTGGTAAAATTCCAGACT+TGG | - | tig0016220:164172-164191 | Msa1358030:CDS | 45.0% | |
| CAGTAACCAAAAACAGGTGG+TGG | + | tig0016220:164248-164267 | None:intergenic | 45.0% | |
| GCACAGTAACCAAAAACAGG+TGG | + | tig0016220:164251-164270 | None:intergenic | 45.0% | |
| ACATACATACCAACCCCAGA+AGG | + | tig0016220:164312-164331 | None:intergenic | 45.0% | |
| CTGAGACTAATATACGGCCT+TGG | - | tig0016220:164855-164874 | Msa1358030:intron | 45.0% | |
| TCCTTCAGAAGATGTTCCCA+AGG | + | tig0016220:164875-164894 | None:intergenic | 45.0% | |
| AGTCGTGTTGCAGCAGTATA+AGG | + | tig0016220:164965-164984 | None:intergenic | 45.0% | |
| ATGTTTCAACCGCACAGGAT+TGG | - | tig0016220:165002-165021 | Msa1358030:intron | 45.0% | |
| CGAGGCTTCACTAATAGTGT+AGG | + | tig0016220:165383-165402 | None:intergenic | 45.0% | |
| CCACAGGCTCACTAAATCTT+AGG | + | tig0016220:165707-165726 | None:intergenic | 45.0% | |
| CCTAAGATTTAGTGAGCCTG+TGG | - | tig0016220:165704-165723 | Msa1358030:CDS | 45.0% | |
| GATTTAGTGAGCCTGTGGTT+TGG | - | tig0016220:165709-165728 | Msa1358030:CDS | 45.0% | |
| TGGCTCAAACTTGAGAAGCT+TGG | + | tig0016220:165917-165936 | None:intergenic | 45.0% | |
| TTTGAGCCAAGAGTTCCTGA+AGG | - | tig0016220:165928-165947 | Msa1358030:intron | 45.0% | |
| TGTAGAAGGTTCCCTAACCA+TGG | + | tig0016220:166028-166047 | None:intergenic | 45.0% | |
| AGTGATGTGGGATCAAATGG+AGG | + | tig0016220:166072-166091 | None:intergenic | 45.0% | |
| ! | TAATCAACCGAGTTGAGAGG+TGG | - | tig0016220:166121-166140 | Msa1358030:intron | 45.0% |
| ! | AATCAACCGAGTTGAGAGGT+GGG | - | tig0016220:166122-166141 | Msa1358030:intron | 45.0% |
| !! | TAAACTATATAAATATAATA+AGG | + | tig0016220:164744-164763 | None:intergenic | 5.0% |
| ! | AGAGAAGCGTAAAGAGTGGC+AGG | + | tig0016220:163344-163363 | None:intergenic | 50.0% |
| GAGGGAAGAGATGAAAGCAG+CGG | + | tig0016220:163393-163412 | None:intergenic | 50.0% | |
| CTGCTTTCATCTCTTCCCTC+AGG | - | tig0016220:163393-163412 | Msa1358030:CDS | 50.0% | |
| AGGTCTCAAGCCTTCACGAA+CGG | + | tig0016220:163518-163537 | None:intergenic | 50.0% | |
| AGGCTTGAGACCTAGAAAGG+AGG | + | tig0016220:163548-163567 | None:intergenic | 50.0% | |
| CAGAGGCTTGAGACCTAGAA+AGG | + | tig0016220:163551-163570 | None:intergenic | 50.0% | |
| !!! | AACGGCGCATTTTAGGTTGG+TGG | - | tig0016220:164046-164065 | Msa1358030:CDS | 50.0% |
| TGATAAGCCTGTTGTGCCCA+TGG | - | tig0016220:164214-164233 | Msa1358030:intron | 50.0% | |
| GATAAGCCTGTTGTGCCCAT+GGG | - | tig0016220:164215-164234 | Msa1358030:intron | 50.0% | |
| ! | TTGGTTACTGTGCTGATCGG+TGG | - | tig0016220:164258-164277 | Msa1358030:intron | 50.0% |
| !! | TTTTCCCTGACTGGTCCTTC+TGG | - | tig0016220:164294-164313 | Msa1358030:intron | 50.0% |
| ! | TTTCCCTGACTGGTCCTTCT+GGG | - | tig0016220:164295-164314 | Msa1358030:intron | 50.0% |
| CTGGACCGTCGACATAACAA+AGG | + | tig0016220:164502-164521 | None:intergenic | 50.0% | |
| TGTTATGTCGACGGTCCAGT+TGG | - | tig0016220:164503-164522 | Msa1358030:CDS | 50.0% | |
| GCCTTGGGAACATCTTCTGA+AGG | - | tig0016220:164871-164890 | Msa1358030:intron | 50.0% | |
| ACGGAGTTTCCAATCCTGTG+CGG | + | tig0016220:165014-165033 | None:intergenic | 50.0% | |
| CATGATCAATGACGCGACCA+GGG | + | tig0016220:165740-165759 | None:intergenic | 50.0% | |
| ! | GGGCAAGGGTCTTTTGTAGA+AGG | + | tig0016220:166042-166061 | None:intergenic | 50.0% |
| GATCAAATGGAGGAGGCAAG+GGG | + | tig0016220:166062-166081 | None:intergenic | 50.0% | |
| GGATCAAATGGAGGAGGCAA+GGG | + | tig0016220:166063-166082 | None:intergenic | 50.0% | |
| GATGTGGGATCAAATGGAGG+AGG | + | tig0016220:166069-166088 | None:intergenic | 50.0% | |
| CATCTTCCCACCTCTCAACT+CGG | + | tig0016220:166131-166150 | None:intergenic | 50.0% | |
| GGAAGAGATGAAAGCAGCGG+CGG | + | tig0016220:163390-163409 | None:intergenic | 55.0% | |
| GGTCTCAAGCCTTCACGAAC+GGG | + | tig0016220:163517-163536 | None:intergenic | 55.0% | |
| CTTATTCGATCCTGGTGGCC+AGG | - | tig0016220:163639-163658 | Msa1358030:CDS | 55.0% | |
| TAACTCGATACCTGGCCACC+AGG | + | tig0016220:163652-163671 | None:intergenic | 55.0% | |
| ! | TTGGGCCCACCACCTGTTTT+TGG | - | tig0016220:164239-164258 | Msa1358030:intron | 55.0% |
| ! | TTCCCTGACTGGTCCTTCTG+GGG | - | tig0016220:164296-164315 | Msa1358030:intron | 55.0% |
| AACCCCAGAAGGACCAGTCA+GGG | + | tig0016220:164301-164320 | None:intergenic | 55.0% | |
| ! | AGTGAGCCTGTGGTTTGGAC+CGG | - | tig0016220:165714-165733 | Msa1358030:CDS | 55.0% |
| CCATGATCAATGACGCGACC+AGG | + | tig0016220:165741-165760 | None:intergenic | 55.0% | |
| CCTGGTCGCGTCATTGATCA+TGG | - | tig0016220:165738-165757 | Msa1358030:CDS | 55.0% | |
| ACGGCTCCTTCAGGAACTCT+TGG | + | tig0016220:165937-165956 | None:intergenic | 55.0% | |
| AAGAGTTCCTGAAGGAGCCG+TGG | - | tig0016220:165936-165955 | Msa1358030:intron | 55.0% | |
| TTGTGCAAGCCATGGACTCC+GGG | + | tig0016220:165969-165988 | None:intergenic | 55.0% | |
| CTTGTGCAAGCCATGGACTC+CGG | + | tig0016220:165970-165989 | None:intergenic | 55.0% | |
| GGGATCAAATGGAGGAGGCA+AGG | + | tig0016220:166064-166083 | None:intergenic | 55.0% | |
| TGAAAGCAGCGGCGGTGATG+AGG | + | tig0016220:163382-163401 | None:intergenic | 60.0% | |
| CCTGTTGTGCCCATGGGCTT+GGG | - | tig0016220:164221-164240 | Msa1358030:intron | 60.0% | |
| ! | CTGTGCTGATCGGTGGACAC+AGG | - | tig0016220:164265-164284 | Msa1358030:intron | 60.0% |
| CAACCCCAGAAGGACCAGTC+AGG | + | tig0016220:164302-164321 | None:intergenic | 60.0% | |
| !! | CTGACTGGTCCTTCTGGGGT+TGG | - | tig0016220:164300-164319 | Msa1358030:intron | 60.0% |
| ATCAATGACGCGACCAGGGC+CGG | + | tig0016220:165736-165755 | None:intergenic | 60.0% | |
| ATGGAGGAGGCAAGGGGCAA+GGG | + | tig0016220:166056-166075 | None:intergenic | 60.0% | |
| AATGGAGGAGGCAAGGGGCA+AGG | + | tig0016220:166057-166076 | None:intergenic | 60.0% | |
| CAGCGGCGGTGATGAGGATG+AGG | + | tig0016220:163376-163395 | None:intergenic | 65.0% | |
| CGGGGTTGACCCGTTCGTGA+AGG | - | tig0016220:163505-163524 | Msa1358030:CDS | 65.0% | |
| GCCTGTTGTGCCCATGGGCT+TGG | - | tig0016220:164220-164239 | Msa1358030:intron | 65.0% | |
| CCCAAGCCCATGGGCACAAC+AGG | + | tig0016220:164224-164243 | None:intergenic | 65.0% | |
| CACAGCTCCACGGCTCCTTC+AGG | + | tig0016220:165946-165965 | None:intergenic | 65.0% | |
| !! | GGTGGTGGGCCCAAGCCCAT+GGG | + | tig0016220:164233-164252 | None:intergenic | 70.0% |
| !! | AGGTGGTGGGCCCAAGCCCA+TGG | + | tig0016220:164234-164253 | None:intergenic | 70.0% |
| CCAGGGCCGGTCCAAACCAC+AGG | + | tig0016220:165723-165742 | None:intergenic | 70.0% | |
| ! | CCTGTGGTTTGGACCGGCCC+TGG | - | tig0016220:165720-165739 | Msa1358030:CDS | 70.0% |
| AGGAGCCGTGGAGCTGTGCC+CGG | - | tig0016220:165948-165967 | Msa1358030:intron | 70.0% | |
| GGACTCCGGGCACAGCTCCA+CGG | + | tig0016220:165956-165975 | None:intergenic | 70.0% | |
| GGAGCTGTGCCCGGAGTCCA+TGG | - | tig0016220:165957-165976 | Msa1358030:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016220 | gene | 163144 | 166395 | 163144 | ID=Msa1358030;Name=Msa1358030 |
| tig0016220 | mRNA | 163144 | 166395 | 163144 | ID=Msa1358030-mRNA-1;Parent=Msa1358030;Name=Msa1358030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=155|1|1|1|1|1|6|222|513 |
| tig0016220 | exon | 163144 | 163722 | 163144 | ID=Msa1358030-mRNA-1:exon:10614;Parent=Msa1358030-mRNA-1 |
| tig0016220 | exon | 164016 | 164226 | 164016 | ID=Msa1358030-mRNA-1:exon:10613;Parent=Msa1358030-mRNA-1 |
| tig0016220 | exon | 164339 | 164403 | 164339 | ID=Msa1358030-mRNA-1:exon:10612;Parent=Msa1358030-mRNA-1 |
| tig0016220 | exon | 164494 | 164686 | 164494 | ID=Msa1358030-mRNA-1:exon:10611;Parent=Msa1358030-mRNA-1 |
| tig0016220 | exon | 165218 | 165816 | 165218 | ID=Msa1358030-mRNA-1:exon:10610;Parent=Msa1358030-mRNA-1 |
| tig0016220 | exon | 166124 | 166395 | 166124 | ID=Msa1358030-mRNA-1:exon:10609;Parent=Msa1358030-mRNA-1 |
| tig0016220 | five_prime_UTR | 166241 | 166395 | 166241 | ID=Msa1358030-mRNA-1:five_prime_utr;Parent=Msa1358030-mRNA-1 |
| tig0016220 | CDS | 166124 | 166240 | 166124 | ID=Msa1358030-mRNA-1:cds;Parent=Msa1358030-mRNA-1 |
| tig0016220 | CDS | 165218 | 165816 | 165218 | ID=Msa1358030-mRNA-1:cds;Parent=Msa1358030-mRNA-1 |
| tig0016220 | CDS | 164494 | 164686 | 164494 | ID=Msa1358030-mRNA-1:cds;Parent=Msa1358030-mRNA-1 |
| tig0016220 | CDS | 164339 | 164403 | 164339 | ID=Msa1358030-mRNA-1:cds;Parent=Msa1358030-mRNA-1 |
| tig0016220 | CDS | 164016 | 164226 | 164016 | ID=Msa1358030-mRNA-1:cds;Parent=Msa1358030-mRNA-1 |
| tig0016220 | CDS | 163366 | 163722 | 163366 | ID=Msa1358030-mRNA-1:cds;Parent=Msa1358030-mRNA-1 |
| tig0016220 | three_prime_UTR | 163144 | 163365 | 163144 | ID=Msa1358030-mRNA-1:three_prime_utr;Parent=Msa1358030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
