AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0513500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513500 MtrunA17_Chr3g0120921 93.805 226 6 1 1 218 1 226 4.59e-157 433
Msa0513500 MtrunA17_Chr2g0289841 69.196 224 47 3 2 217 23 232 1.36e-102 296
Msa0513500 MtrunA17_Chr4g0075711 68.900 209 57 1 17 217 18 226 4.32e-98 284
Msa0513500 MtrunA17_Chr8g0377621 64.162 173 54 1 53 217 59 231 9.66e-80 238
Msa0513500 MtrunA17_Chr3g0122221 60.795 176 60 2 52 218 52 227 7.12e-72 218
Msa0513500 MtrunA17_Chr7g0261611 51.075 186 82 3 38 215 33 217 2.60e-61 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513500 AT3G07880.1 73.134 201 45 2 25 217 38 237 4.03e-105 303
Msa0513500 AT1G62450.1 63.380 213 67 4 15 217 11 222 1.74e-85 253
Msa0513500 AT1G12070.1 58.590 227 79 4 1 217 1 222 3.07e-82 244

Find 65 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAGCAATAACATTGTTTC+TGG 0.193009 3_4:-63718765 Msa0513500:CDS
ATTATCAGACCCCATCTTCT+TGG 0.244589 3_4:+63719650 None:intergenic
CATAGGACCTAGCTGTATTT+TGG 0.248019 3_4:+63719500 None:intergenic
GTAGAATTACTATTGCAAAT+TGG 0.255999 3_4:+63718156 None:intergenic
CCAGAGGGTGTGACTTCTTC+TGG 0.286287 3_4:+63718533 None:intergenic
TAGAATTACTATTGCAAATT+GGG 0.336926 3_4:+63718157 None:intergenic
AAATGGAAGGAGCAGCTTCT+TGG 0.366946 3_4:-63719290 Msa0513500:CDS
TGTTTGGAAGACTGCTGTTA+AGG 0.371169 3_4:-63718724 Msa0513500:CDS
GAGTTAACTACCTTGGATAT+TGG 0.372060 3_4:-63719686 Msa0513500:five_prime_UTR
GAGGAGGAAGAAGATGAATA+TGG 0.374764 3_4:-63719525 Msa0513500:CDS
GTTTGGAAGACTGCTGTTAA+GGG 0.387643 3_4:-63718723 Msa0513500:intron
AATGGAAGGAGCAGCTTCTT+GGG 0.389589 3_4:-63719289 Msa0513500:CDS
TAAAATACACCAATACTGTT+TGG 0.391465 3_4:-63718740 Msa0513500:CDS
TATAGGACGATGAGAGTCTA+AGG 0.397474 3_4:-63719313 Msa0513500:intron
GTTCTTCCCATTCCTGAAGA+TGG 0.408171 3_4:-63718855 Msa0513500:CDS
CTTGAGTAAAATTATTCAAA+AGG 0.412061 3_4:+63718056 None:intergenic
CCAGAAGAAGTCACACCCTC+TGG 0.416770 3_4:-63718533 Msa0513500:CDS
AGGCTTGTAAAATTCACTTC+AGG 0.420910 3_4:+63718909 None:intergenic
GATAATGAAAACAAAGAAAC+AGG 0.423638 3_4:-63719633 Msa0513500:CDS
TCTGGCATCTCATGTGTGTA+AGG 0.427995 3_4:+63718551 None:intergenic
GTGTGTAAGGCTCTGGTTGA+GGG 0.432758 3_4:+63718564 None:intergenic
ATCTCATGTGTGTAAGGCTC+TGG 0.437007 3_4:+63718557 None:intergenic
ACGATGAGAGTCTAAGGAAA+TGG 0.439473 3_4:-63719307 Msa0513500:CDS
CTGTTGAAGTTCCAAGAAGA+TGG 0.447714 3_4:-63719661 Msa0513500:exon
TGAGCAATAACATTGTTTCT+GGG 0.463614 3_4:-63718764 Msa0513500:CDS
CAAAATACAGCTAGGTCCTA+TGG 0.489028 3_4:-63719499 Msa0513500:CDS
AGAACACCTTGAGAAAGATA+AGG 0.492651 3_4:-63719466 Msa0513500:intron
AGAAGATTCACTCGTATGCC+TGG 0.493330 3_4:+63719560 None:intergenic
TGTGTGTAAGGCTCTGGTTG+AGG 0.496739 3_4:+63718563 None:intergenic
TTGTGGTTTACTCTTAAAGA+AGG 0.514851 3_4:-63718819 Msa0513500:CDS
CACCCTCTGGGATATTTGCT+AGG 0.518348 3_4:-63718520 Msa0513500:CDS
TGTTGATGAGTTAACTACCT+TGG 0.520655 3_4:-63719693 Msa0513500:five_prime_UTR
TCCTGAAGATGGAAAACCAC+AGG 0.525613 3_4:-63718844 Msa0513500:CDS
TGATGACAATAAATGTTACT+TGG 0.527867 3_4:-63718238 Msa0513500:CDS
AGCCTTTCTATAATCTCTCC+TGG 0.528718 3_4:-63718891 Msa0513500:CDS
TGTTGAAGTTCCAAGAAGAT+GGG 0.530353 3_4:-63719660 Msa0513500:exon
ATGGAAAACCACAGGGATTG+TGG 0.531586 3_4:-63718836 Msa0513500:CDS
ACCCTCTGGGATATTTGCTA+GGG 0.538296 3_4:-63718519 Msa0513500:CDS
TCACTCGTATGCCTGGTAAG+AGG 0.546518 3_4:+63719567 None:intergenic
ACAAAACCTTATCTTTCTCA+AGG 0.549448 3_4:+63719460 None:intergenic
AACATCATGAGCCTCTTACC+AGG 0.549984 3_4:-63719578 Msa0513500:CDS
ACAGGACAAACTAGTGAGGC+TGG 0.550189 3_4:-63719615 Msa0513500:CDS
AAGCTGAATTTCAGACGGTA+AGG 0.552089 3_4:+63718792 None:intergenic
ACAATATTCTGCAAGATCAA+AGG 0.554037 3_4:-63718495 Msa0513500:intron
GGATTGGGCTTGATCATACA+TGG 0.554481 3_4:-63718187 Msa0513500:exon
GATAGCTCAAAAGAGATGCT+TGG 0.554702 3_4:-63718596 Msa0513500:CDS
AGCAGTCTTCCAAACAGTAT+TGG 0.558230 3_4:+63718731 None:intergenic
CAGAAGAAGTCACACCCTCT+GGG 0.582116 3_4:-63718532 Msa0513500:CDS
TACCAGGAGAGATTATAGAA+AGG 0.583890 3_4:+63718889 None:intergenic
TTCAACAGCTCCAATATCCA+AGG 0.597476 3_4:+63719676 None:intergenic
TATGGAGCCAAAATACAGCT+AGG 0.601518 3_4:-63719507 Msa0513500:CDS
TGTTCTTTAATAGTGACCAT+AGG 0.603238 3_4:+63719483 None:intergenic
CCCCTAGCAAATATCCCAGA+GGG 0.617735 3_4:+63718518 None:intergenic
TGAGAGTCTAAGGAAATGGA+AGG 0.619544 3_4:-63719303 Msa0513500:CDS
TTCTGTCTATGCAACTGAGG+AGG 0.624555 3_4:-63719541 Msa0513500:CDS
AGAACAATGTCATCTCTACC+AGG 0.626041 3_4:+63718873 None:intergenic
CAACAAAGCTGAATTTCAGA+CGG 0.649490 3_4:+63718787 None:intergenic
GTTGAAGTTCCAAGAAGATG+GGG 0.654525 3_4:-63719659 Msa0513500:exon
CCTGAAGATGGAAAACCACA+GGG 0.658329 3_4:-63718843 Msa0513500:CDS
CCCTCTGGGATATTTGCTAG+GGG 0.670702 3_4:-63718518 Msa0513500:CDS
AGAGTAAACCACAATCCCTG+TGG 0.676637 3_4:+63718828 None:intergenic
GGACAAACTAGTGAGGCTGG+TGG 0.680791 3_4:-63719612 Msa0513500:CDS
ATCTTCTGTCTATGCAACTG+AGG 0.702591 3_4:-63719544 Msa0513500:CDS
AGAAACAGGACAAACTAGTG+AGG 0.703043 3_4:-63719619 Msa0513500:CDS
TCCCCTAGCAAATATCCCAG+AGG 0.719574 3_4:+63718517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGTATAATTTTTTTGT+TGG - chr3_4:63719631-63719650 Msa0513500:CDS 10.0%
!!! AAAAAAATATTGACTAAATA+TGG + chr3_4:63719799-63719818 None:intergenic 10.0%
!!! ATATTGTATAATTTTTTTGT+TGG - chr3_4:63719631-63719650 Msa0513500:CDS 10.0%
!!! AAAAAAATATTGACTAAATA+TGG + chr3_4:63719799-63719818 None:intergenic 10.0%
!!! ATTGTTTTATGTTTTTTCAT+TGG - chr3_4:63718051-63718070 Msa0513500:three_prime_UTR 15.0%
!! GTAATTTAAGTAATTTACTT+AGG + chr3_4:63718541-63718560 None:intergenic 15.0%
!!! ATTGTTTTATGTTTTTTCAT+TGG - chr3_4:63718051-63718070 Msa0513500:three_prime_UTR 15.0%
!! GTAATTTAAGTAATTTACTT+AGG + chr3_4:63718541-63718560 None:intergenic 15.0%
!! AAAAAAATACTTGAAGAGAA+GGG + chr3_4:63718087-63718106 None:intergenic 20.0%
!! AAAAAAAATACTTGAAGAGA+AGG + chr3_4:63718088-63718107 None:intergenic 20.0%
!!! TTTTAGTACATAGATAGTTT+TGG - chr3_4:63718185-63718204 Msa0513500:exon 20.0%
!!! TTGTTCATTGTTTATGTTTT+TGG - chr3_4:63718580-63718599 Msa0513500:CDS 20.0%
!!! TGTTCATTGTTTATGTTTTT+GGG - chr3_4:63718581-63718600 Msa0513500:CDS 20.0%
!!! TGAACAATTTTCTTTTACAA+AGG + chr3_4:63718749-63718768 None:intergenic 20.0%
!!! TAAAACAAATGTTATTTCAG+TGG - chr3_4:63719312-63719331 Msa0513500:intron 20.0%
!! TGTTCCTCATAATTATTTAT+TGG - chr3_4:63719535-63719554 Msa0513500:CDS 20.0%
!! GTTACCAATAAATAATTATG+AGG + chr3_4:63719542-63719561 None:intergenic 20.0%
!! TTGTTACACTTAATATGTAA+CGG + chr3_4:63719566-63719585 None:intergenic 20.0%
!!! TCAACTATACTTTTGATATT+AGG - chr3_4:63719718-63719737 Msa0513500:five_prime_UTR 20.0%
!! TAGAATTACTATTGCAAATT+GGG + chr3_4:63719776-63719795 None:intergenic 20.0%
!! CTTGAGTAAAATTATTCAAA+AGG + chr3_4:63719877-63719896 None:intergenic 20.0%
!!! CTTTTGAATAATTTTACTCA+AGG - chr3_4:63719875-63719894 Msa0513500:five_prime_UTR 20.0%
!! AAAAAAATACTTGAAGAGAA+GGG + chr3_4:63718087-63718106 None:intergenic 20.0%
!! AAAAAAAATACTTGAAGAGA+AGG + chr3_4:63718088-63718107 None:intergenic 20.0%
!!! TTTTAGTACATAGATAGTTT+TGG - chr3_4:63718185-63718204 Msa0513500:exon 20.0%
!!! TTGTTCATTGTTTATGTTTT+TGG - chr3_4:63718580-63718599 Msa0513500:CDS 20.0%
!!! TGTTCATTGTTTATGTTTTT+GGG - chr3_4:63718581-63718600 Msa0513500:CDS 20.0%
!!! TGAACAATTTTCTTTTACAA+AGG + chr3_4:63718749-63718768 None:intergenic 20.0%
!!! TAAAACAAATGTTATTTCAG+TGG - chr3_4:63719312-63719331 Msa0513500:intron 20.0%
!! TGTTCCTCATAATTATTTAT+TGG - chr3_4:63719535-63719554 Msa0513500:CDS 20.0%
!! GTTACCAATAAATAATTATG+AGG + chr3_4:63719542-63719561 None:intergenic 20.0%
!! TTGTTACACTTAATATGTAA+CGG + chr3_4:63719566-63719585 None:intergenic 20.0%
!!! TCAACTATACTTTTGATATT+AGG - chr3_4:63719718-63719737 Msa0513500:five_prime_UTR 20.0%
!! TAGAATTACTATTGCAAATT+GGG + chr3_4:63719776-63719795 None:intergenic 20.0%
!! CTTGAGTAAAATTATTCAAA+AGG + chr3_4:63719877-63719896 None:intergenic 20.0%
!!! CTTTTGAATAATTTTACTCA+AGG - chr3_4:63719875-63719894 Msa0513500:five_prime_UTR 20.0%
!!! CTATAGAATTTGTTTTGTTG+AGG - chr3_4:63718154-63718173 Msa0513500:three_prime_UTR 25.0%
! GATAATGAAAACAAAGAAAC+AGG - chr3_4:63718297-63718316 Msa0513500:intron 25.0%
!!! AGATAAGGTTTTGTTTCTTT+TGG - chr3_4:63718479-63718498 Msa0513500:intron 25.0%
! TAAAATACACCAATACTGTT+TGG - chr3_4:63719190-63719209 Msa0513500:intron 25.0%
! GTGTTACAAAATTGGAAATT+TGG + chr3_4:63719267-63719286 None:intergenic 25.0%
! TGATGACAATAAATGTTACT+TGG - chr3_4:63719692-63719711 Msa0513500:five_prime_UTR 25.0%
!! CTATACTTTTGATATTAGGA+AGG - chr3_4:63719722-63719741 Msa0513500:five_prime_UTR 25.0%
!! TTTTGATATTAGGAAGGATT+GGG - chr3_4:63719728-63719747 Msa0513500:five_prime_UTR 25.0%
! GTAGAATTACTATTGCAAAT+TGG + chr3_4:63719777-63719796 None:intergenic 25.0%
!! ATTTTACTCAAGGAAACAAT+AGG - chr3_4:63719885-63719904 Msa0513500:five_prime_UTR 25.0%
!!! CTATAGAATTTGTTTTGTTG+AGG - chr3_4:63718154-63718173 Msa0513500:three_prime_UTR 25.0%
! GATAATGAAAACAAAGAAAC+AGG - chr3_4:63718297-63718316 Msa0513500:intron 25.0%
!!! AGATAAGGTTTTGTTTCTTT+TGG - chr3_4:63718479-63718498 Msa0513500:intron 25.0%
! TAAAATACACCAATACTGTT+TGG - chr3_4:63719190-63719209 Msa0513500:intron 25.0%
! GTGTTACAAAATTGGAAATT+TGG + chr3_4:63719267-63719286 None:intergenic 25.0%
! TGATGACAATAAATGTTACT+TGG - chr3_4:63719692-63719711 Msa0513500:five_prime_UTR 25.0%
!! CTATACTTTTGATATTAGGA+AGG - chr3_4:63719722-63719741 Msa0513500:five_prime_UTR 25.0%
!! TTTTGATATTAGGAAGGATT+GGG - chr3_4:63719728-63719747 Msa0513500:five_prime_UTR 25.0%
! GTAGAATTACTATTGCAAAT+TGG + chr3_4:63719777-63719796 None:intergenic 25.0%
TGTTCTTTAATAGTGACCAT+AGG + chr3_4:63718450-63718469 None:intergenic 30.0%
ACAAAACCTTATCTTTCTCA+AGG + chr3_4:63718473-63718492 None:intergenic 30.0%
! CATTGGAGGTATATAAATCA+CGG - chr3_4:63718681-63718700 Msa0513500:intron 30.0%
TTGTGGTTTACTCTTAAAGA+AGG - chr3_4:63719111-63719130 Msa0513500:intron 30.0%
! TGAGCAATAACATTGTTTCT+GGG - chr3_4:63719166-63719185 Msa0513500:intron 30.0%
AGGGATAAGTGTTACAAAAT+TGG + chr3_4:63719275-63719294 None:intergenic 30.0%
ACAATATTCTGCAAGATCAA+AGG - chr3_4:63719435-63719454 Msa0513500:intron 30.0%
! TATTTTTCTTGTGCAGTTTC+TGG - chr3_4:63719668-63719687 Msa0513500:five_prime_UTR 30.0%
! CTTTTGATATTAGGAAGGAT+TGG - chr3_4:63719727-63719746 Msa0513500:five_prime_UTR 30.0%
TGTTCTTTAATAGTGACCAT+AGG + chr3_4:63718450-63718469 None:intergenic 30.0%
ACAAAACCTTATCTTTCTCA+AGG + chr3_4:63718473-63718492 None:intergenic 30.0%
! CATTGGAGGTATATAAATCA+CGG - chr3_4:63718681-63718700 Msa0513500:intron 30.0%
TTGTGGTTTACTCTTAAAGA+AGG - chr3_4:63719111-63719130 Msa0513500:intron 30.0%
! TGAGCAATAACATTGTTTCT+GGG - chr3_4:63719166-63719185 Msa0513500:intron 30.0%
AGGGATAAGTGTTACAAAAT+TGG + chr3_4:63719275-63719294 None:intergenic 30.0%
ACAATATTCTGCAAGATCAA+AGG - chr3_4:63719435-63719454 Msa0513500:intron 30.0%
! TATTTTTCTTGTGCAGTTTC+TGG - chr3_4:63719668-63719687 Msa0513500:five_prime_UTR 30.0%
! CTTTTGATATTAGGAAGGAT+TGG - chr3_4:63719727-63719746 Msa0513500:five_prime_UTR 30.0%
! TGTTGATGAGTTAACTACCT+TGG - chr3_4:63718237-63718256 Msa0513500:CDS 35.0%
GAGTTAACTACCTTGGATAT+TGG - chr3_4:63718244-63718263 Msa0513500:CDS 35.0%
TGTTGAAGTTCCAAGAAGAT+GGG - chr3_4:63718270-63718289 Msa0513500:intron 35.0%
AGAACACCTTGAGAAAGATA+AGG - chr3_4:63718464-63718483 Msa0513500:intron 35.0%
TGGGTTGTACGAATGAATAT+AGG - chr3_4:63718600-63718619 Msa0513500:CDS 35.0%
AGGCTTGTAAAATTCACTTC+AGG + chr3_4:63719024-63719043 None:intergenic 35.0%
TACCAGGAGAGATTATAGAA+AGG + chr3_4:63719044-63719063 None:intergenic 35.0%
CAACAAAGCTGAATTTCAGA+CGG + chr3_4:63719146-63719165 None:intergenic 35.0%
GTGAGCAATAACATTGTTTC+TGG - chr3_4:63719165-63719184 Msa0513500:intron 35.0%
! TGTTGATGAGTTAACTACCT+TGG - chr3_4:63718237-63718256 Msa0513500:CDS 35.0%
GAGTTAACTACCTTGGATAT+TGG - chr3_4:63718244-63718263 Msa0513500:CDS 35.0%
TGTTGAAGTTCCAAGAAGAT+GGG - chr3_4:63718270-63718289 Msa0513500:intron 35.0%
AGAACACCTTGAGAAAGATA+AGG - chr3_4:63718464-63718483 Msa0513500:intron 35.0%
TGGGTTGTACGAATGAATAT+AGG - chr3_4:63718600-63718619 Msa0513500:CDS 35.0%
AGGCTTGTAAAATTCACTTC+AGG + chr3_4:63719024-63719043 None:intergenic 35.0%
TACCAGGAGAGATTATAGAA+AGG + chr3_4:63719044-63719063 None:intergenic 35.0%
CAACAAAGCTGAATTTCAGA+CGG + chr3_4:63719146-63719165 None:intergenic 35.0%
GTGAGCAATAACATTGTTTC+TGG - chr3_4:63719165-63719184 Msa0513500:intron 35.0%
TTCAACAGCTCCAATATCCA+AGG + chr3_4:63718257-63718276 None:intergenic 40.0%
CTGTTGAAGTTCCAAGAAGA+TGG - chr3_4:63718269-63718288 Msa0513500:intron 40.0%
GTTGAAGTTCCAAGAAGATG+GGG - chr3_4:63718271-63718290 Msa0513500:intron 40.0%
ATTATCAGACCCCATCTTCT+TGG + chr3_4:63718283-63718302 None:intergenic 40.0%
AGAAACAGGACAAACTAGTG+AGG - chr3_4:63718311-63718330 Msa0513500:intron 40.0%
ATCTTCTGTCTATGCAACTG+AGG - chr3_4:63718386-63718405 Msa0513500:intron 40.0%
GAGGAGGAAGAAGATGAATA+TGG - chr3_4:63718405-63718424 Msa0513500:intron 40.0%
TATGGAGCCAAAATACAGCT+AGG - chr3_4:63718423-63718442 Msa0513500:intron 40.0%
! CATAGGACCTAGCTGTATTT+TGG + chr3_4:63718433-63718452 None:intergenic 40.0%
CAAAATACAGCTAGGTCCTA+TGG - chr3_4:63718431-63718450 Msa0513500:intron 40.0%
TATAGGACGATGAGAGTCTA+AGG - chr3_4:63718617-63718636 Msa0513500:intron 40.0%
ACGATGAGAGTCTAAGGAAA+TGG - chr3_4:63718623-63718642 Msa0513500:intron 40.0%
TGAGAGTCTAAGGAAATGGA+AGG - chr3_4:63718627-63718646 Msa0513500:intron 40.0%
!! AGTGTCGATGTCAACAACAT+TGG - chr3_4:63718664-63718683 Msa0513500:intron 40.0%
AGCCTTTCTATAATCTCTCC+TGG - chr3_4:63719039-63719058 Msa0513500:intron 40.0%
AGAACAATGTCATCTCTACC+AGG + chr3_4:63719060-63719079 None:intergenic 40.0%
! GGTTTTCCATCTTCAGGAAT+GGG + chr3_4:63719084-63719103 None:intergenic 40.0%
! TGGTTTTCCATCTTCAGGAA+TGG + chr3_4:63719085-63719104 None:intergenic 40.0%
AAGCTGAATTTCAGACGGTA+AGG + chr3_4:63719141-63719160 None:intergenic 40.0%
AGCAGTCTTCCAAACAGTAT+TGG + chr3_4:63719202-63719221 None:intergenic 40.0%
TGTTTGGAAGACTGCTGTTA+AGG - chr3_4:63719206-63719225 Msa0513500:intron 40.0%
GTTTGGAAGACTGCTGTTAA+GGG - chr3_4:63719207-63719226 Msa0513500:intron 40.0%
GATAGCTCAAAAGAGATGCT+TGG - chr3_4:63719334-63719353 Msa0513500:intron 40.0%
TTCAACAGCTCCAATATCCA+AGG + chr3_4:63718257-63718276 None:intergenic 40.0%
CTGTTGAAGTTCCAAGAAGA+TGG - chr3_4:63718269-63718288 Msa0513500:intron 40.0%
GTTGAAGTTCCAAGAAGATG+GGG - chr3_4:63718271-63718290 Msa0513500:intron 40.0%
ATTATCAGACCCCATCTTCT+TGG + chr3_4:63718283-63718302 None:intergenic 40.0%
AGAAACAGGACAAACTAGTG+AGG - chr3_4:63718311-63718330 Msa0513500:intron 40.0%
ATCTTCTGTCTATGCAACTG+AGG - chr3_4:63718386-63718405 Msa0513500:intron 40.0%
GAGGAGGAAGAAGATGAATA+TGG - chr3_4:63718405-63718424 Msa0513500:intron 40.0%
TATGGAGCCAAAATACAGCT+AGG - chr3_4:63718423-63718442 Msa0513500:intron 40.0%
! CATAGGACCTAGCTGTATTT+TGG + chr3_4:63718433-63718452 None:intergenic 40.0%
CAAAATACAGCTAGGTCCTA+TGG - chr3_4:63718431-63718450 Msa0513500:intron 40.0%
TATAGGACGATGAGAGTCTA+AGG - chr3_4:63718617-63718636 Msa0513500:intron 40.0%
ACGATGAGAGTCTAAGGAAA+TGG - chr3_4:63718623-63718642 Msa0513500:intron 40.0%
TGAGAGTCTAAGGAAATGGA+AGG - chr3_4:63718627-63718646 Msa0513500:intron 40.0%
!! AGTGTCGATGTCAACAACAT+TGG - chr3_4:63718664-63718683 Msa0513500:intron 40.0%
AGCCTTTCTATAATCTCTCC+TGG - chr3_4:63719039-63719058 Msa0513500:intron 40.0%
AGAACAATGTCATCTCTACC+AGG + chr3_4:63719060-63719079 None:intergenic 40.0%
! GGTTTTCCATCTTCAGGAAT+GGG + chr3_4:63719084-63719103 None:intergenic 40.0%
! TGGTTTTCCATCTTCAGGAA+TGG + chr3_4:63719085-63719104 None:intergenic 40.0%
AAGCTGAATTTCAGACGGTA+AGG + chr3_4:63719141-63719160 None:intergenic 40.0%
AGCAGTCTTCCAAACAGTAT+TGG + chr3_4:63719202-63719221 None:intergenic 40.0%
TGTTTGGAAGACTGCTGTTA+AGG - chr3_4:63719206-63719225 Msa0513500:intron 40.0%
GTTTGGAAGACTGCTGTTAA+GGG - chr3_4:63719207-63719226 Msa0513500:intron 40.0%
GATAGCTCAAAAGAGATGCT+TGG - chr3_4:63719334-63719353 Msa0513500:intron 40.0%
AACATCATGAGCCTCTTACC+AGG - chr3_4:63718352-63718371 Msa0513500:intron 45.0%
AGAAGATTCACTCGTATGCC+TGG + chr3_4:63718373-63718392 None:intergenic 45.0%
TTCTGTCTATGCAACTGAGG+AGG - chr3_4:63718389-63718408 Msa0513500:intron 45.0%
AAATGGAAGGAGCAGCTTCT+TGG - chr3_4:63718640-63718659 Msa0513500:intron 45.0%
AATGGAAGGAGCAGCTTCTT+GGG - chr3_4:63718641-63718660 Msa0513500:intron 45.0%
GTCGATGTCAACAACATTGG+AGG - chr3_4:63718667-63718686 Msa0513500:intron 45.0%
!! ACAAGTGTGTCGATTGTTGC+AGG - chr3_4:63718902-63718921 Msa0513500:CDS 45.0%
!! CAAGTGTGTCGATTGTTGCA+GGG - chr3_4:63718903-63718922 Msa0513500:CDS 45.0%
GTTCTTCCCATTCCTGAAGA+TGG - chr3_4:63719075-63719094 Msa0513500:intron 45.0%
TCCTGAAGATGGAAAACCAC+AGG - chr3_4:63719086-63719105 Msa0513500:intron 45.0%
CCTGAAGATGGAAAACCACA+GGG - chr3_4:63719087-63719106 Msa0513500:intron 45.0%
ATGGAAAACCACAGGGATTG+TGG - chr3_4:63719094-63719113 Msa0513500:intron 45.0%
AGAGTAAACCACAATCCCTG+TGG + chr3_4:63719105-63719124 None:intergenic 45.0%
ATCTCATGTGTGTAAGGCTC+TGG + chr3_4:63719376-63719395 None:intergenic 45.0%
TCTGGCATCTCATGTGTGTA+AGG + chr3_4:63719382-63719401 None:intergenic 45.0%
!! ACCCTCTGGGATATTTGCTA+GGG - chr3_4:63719411-63719430 Msa0513500:intron 45.0%
GGATTGGGCTTGATCATACA+TGG - chr3_4:63719743-63719762 Msa0513500:five_prime_UTR 45.0%
AACATCATGAGCCTCTTACC+AGG - chr3_4:63718352-63718371 Msa0513500:intron 45.0%
AGAAGATTCACTCGTATGCC+TGG + chr3_4:63718373-63718392 None:intergenic 45.0%
TTCTGTCTATGCAACTGAGG+AGG - chr3_4:63718389-63718408 Msa0513500:intron 45.0%
AAATGGAAGGAGCAGCTTCT+TGG - chr3_4:63718640-63718659 Msa0513500:intron 45.0%
AATGGAAGGAGCAGCTTCTT+GGG - chr3_4:63718641-63718660 Msa0513500:intron 45.0%
GTCGATGTCAACAACATTGG+AGG - chr3_4:63718667-63718686 Msa0513500:intron 45.0%
!! ACAAGTGTGTCGATTGTTGC+AGG - chr3_4:63718902-63718921 Msa0513500:CDS 45.0%
!! CAAGTGTGTCGATTGTTGCA+GGG - chr3_4:63718903-63718922 Msa0513500:CDS 45.0%
GTTCTTCCCATTCCTGAAGA+TGG - chr3_4:63719075-63719094 Msa0513500:intron 45.0%
TCCTGAAGATGGAAAACCAC+AGG - chr3_4:63719086-63719105 Msa0513500:intron 45.0%
CCTGAAGATGGAAAACCACA+GGG - chr3_4:63719087-63719106 Msa0513500:intron 45.0%
ATGGAAAACCACAGGGATTG+TGG - chr3_4:63719094-63719113 Msa0513500:intron 45.0%
AGAGTAAACCACAATCCCTG+TGG + chr3_4:63719105-63719124 None:intergenic 45.0%
ATCTCATGTGTGTAAGGCTC+TGG + chr3_4:63719376-63719395 None:intergenic 45.0%
TCTGGCATCTCATGTGTGTA+AGG + chr3_4:63719382-63719401 None:intergenic 45.0%
!! ACCCTCTGGGATATTTGCTA+GGG - chr3_4:63719411-63719430 Msa0513500:intron 45.0%
GGATTGGGCTTGATCATACA+TGG - chr3_4:63719743-63719762 Msa0513500:five_prime_UTR 45.0%
!! TAATACAATTAAAATTAAAA+GGG + chr3_4:63719294-63719313 None:intergenic 5.0%
!! TTAATACAATTAAAATTAAA+AGG + chr3_4:63719295-63719314 None:intergenic 5.0%
!! TAATACAATTAAAATTAAAA+GGG + chr3_4:63719294-63719313 None:intergenic 5.0%
!! TTAATACAATTAAAATTAAA+AGG + chr3_4:63719295-63719314 None:intergenic 5.0%
ACAGGACAAACTAGTGAGGC+TGG - chr3_4:63718315-63718334 Msa0513500:intron 50.0%
TCACTCGTATGCCTGGTAAG+AGG + chr3_4:63718366-63718385 None:intergenic 50.0%
! CCCTGTGGTTTTCCATCTTC+AGG + chr3_4:63719090-63719109 None:intergenic 50.0%
! GTGTGTAAGGCTCTGGTTGA+GGG + chr3_4:63719369-63719388 None:intergenic 50.0%
! TGTGTGTAAGGCTCTGGTTG+AGG + chr3_4:63719370-63719389 None:intergenic 50.0%
CAGAAGAAGTCACACCCTCT+GGG - chr3_4:63719398-63719417 Msa0513500:intron 50.0%
!! CACCCTCTGGGATATTTGCT+AGG - chr3_4:63719410-63719429 Msa0513500:intron 50.0%
CCCCTAGCAAATATCCCAGA+GGG + chr3_4:63719415-63719434 None:intergenic 50.0%
!! CCCTCTGGGATATTTGCTAG+GGG - chr3_4:63719412-63719431 Msa0513500:intron 50.0%
TCCCCTAGCAAATATCCCAG+AGG + chr3_4:63719416-63719435 None:intergenic 50.0%
ACAGGACAAACTAGTGAGGC+TGG - chr3_4:63718315-63718334 Msa0513500:intron 50.0%
TCACTCGTATGCCTGGTAAG+AGG + chr3_4:63718366-63718385 None:intergenic 50.0%
! CCCTGTGGTTTTCCATCTTC+AGG + chr3_4:63719090-63719109 None:intergenic 50.0%
! GTGTGTAAGGCTCTGGTTGA+GGG + chr3_4:63719369-63719388 None:intergenic 50.0%
! TGTGTGTAAGGCTCTGGTTG+AGG + chr3_4:63719370-63719389 None:intergenic 50.0%
CAGAAGAAGTCACACCCTCT+GGG - chr3_4:63719398-63719417 Msa0513500:intron 50.0%
!! CACCCTCTGGGATATTTGCT+AGG - chr3_4:63719410-63719429 Msa0513500:intron 50.0%
CCCCTAGCAAATATCCCAGA+GGG + chr3_4:63719415-63719434 None:intergenic 50.0%
!! CCCTCTGGGATATTTGCTAG+GGG - chr3_4:63719412-63719431 Msa0513500:intron 50.0%
TCCCCTAGCAAATATCCCAG+AGG + chr3_4:63719416-63719435 None:intergenic 50.0%
GGACAAACTAGTGAGGCTGG+TGG - chr3_4:63718318-63718337 Msa0513500:intron 55.0%
! CCAGAGGGTGTGACTTCTTC+TGG + chr3_4:63719400-63719419 None:intergenic 55.0%
CCAGAAGAAGTCACACCCTC+TGG - chr3_4:63719397-63719416 Msa0513500:intron 55.0%
GGACAAACTAGTGAGGCTGG+TGG - chr3_4:63718318-63718337 Msa0513500:intron 55.0%
! CCAGAGGGTGTGACTTCTTC+TGG + chr3_4:63719400-63719419 None:intergenic 55.0%
CCAGAAGAAGTCACACCCTC+TGG - chr3_4:63719397-63719416 Msa0513500:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 63718047 63719905 63718047 ID=Msa0513500;Name=Msa0513500
chr3_4 mRNA 63718047 63719905 63718047 ID=Msa0513500-mRNA-1;Parent=Msa0513500;Name=Msa0513500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=241|0.75|0.8|1|1|1|5|150|218
chr3_4 exon 63718047 63718268 63718047 ID=Msa0513500-mRNA-1:exon:15996;Parent=Msa0513500-mRNA-1
chr3_4 exon 63718496 63718620 63718496 ID=Msa0513500-mRNA-1:exon:15995;Parent=Msa0513500-mRNA-1
chr3_4 exon 63718724 63718942 63718724 ID=Msa0513500-mRNA-1:exon:15994;Parent=Msa0513500-mRNA-1
chr3_4 exon 63719288 63719330 63719288 ID=Msa0513500-mRNA-1:exon:15993;Parent=Msa0513500-mRNA-1
chr3_4 exon 63719467 63719905 63719467 ID=Msa0513500-mRNA-1:exon:15992;Parent=Msa0513500-mRNA-1
chr3_4 five_prime_UTR 63719665 63719905 63719665 ID=Msa0513500-mRNA-1:five_prime_utr;Parent=Msa0513500-mRNA-1
chr3_4 CDS 63719467 63719664 63719467 ID=Msa0513500-mRNA-1:cds;Parent=Msa0513500-mRNA-1
chr3_4 CDS 63719288 63719330 63719288 ID=Msa0513500-mRNA-1:cds;Parent=Msa0513500-mRNA-1
chr3_4 CDS 63718724 63718942 63718724 ID=Msa0513500-mRNA-1:cds;Parent=Msa0513500-mRNA-1
chr3_4 CDS 63718496 63718620 63718496 ID=Msa0513500-mRNA-1:cds;Parent=Msa0513500-mRNA-1
chr3_4 CDS 63718197 63718268 63718197 ID=Msa0513500-mRNA-1:cds;Parent=Msa0513500-mRNA-1
chr3_4 three_prime_UTR 63718047 63718196 63718047 ID=Msa0513500-mRNA-1:three_prime_utr;Parent=Msa0513500-mRNA-1
Gene Sequence

>Msa0513500

ATGGGGTCTGATAATGAAAACAAAGAAACAGGACAAACTAGTGAGGCTGGTGGAGAAAAAGAAGAACATCATGAGCCTCTTACCAGGCATACGAGTGAATCTTCTGTCTATGCAACTGAGGAGGAAGAAGATGAATATGGAGCCAAAATACAGCTAGGTCCTATGGTCACTATTAAAGAACACCTTGAGAAAGATAAGGACGATGAGAGTCTAAGGAAATGGAAGGAGCAGCTTCTTGGGAAAATTCTTGAACCTGAAGTGAATTTTACAAGCCTTTCTATAATCTCTCCTGGTAGAGATGACATTGTTCTTCCCATTCCTGAAGATGGAAAACCACAGGGATTGTGGTTTACTCTTAAAGAAGGTAGTCCTTACCGTCTGAAATTCAGCTTTGTTGTGAGCAATAACATTGTTTCTGGGTTAAAATACACCAATACTGTTTGGAAGACTGCTGTTAAGGTGGATAGCTCAAAAGAGATGCTTGGAACTTTCAGCCCTCAACCAGAGCCTTACACACATGAGATGCCAGAAGAAGTCACACCCTCTGGGATATTTGCTAGGGGACAATATTCTGCAAGATCAAAGTTTCTGGATGATGACAATAAATGTTACTTGGAGATCAACTATACTTTTGATATTAGGAAGGATTGGGCTTGA

Protein sequence

>Msa0513500

MGSDNENKETGQTSEAGGEKEEHHEPLTRHTSESSVYATEEEEDEYGAKIQLGPMVTIKEHLEKDKDDESLRKWKEQLLGKILEPEVNFTSLSIISPGRDDIVLPIPEDGKPQGLWFTLKEGSPYRLKFSFVVSNNIVSGLKYTNTVWKTAVKVDSSKEMLGTFSPQPEPYTHEMPEEVTPSGIFARGQYSARSKFLDDDNKCYLEINYTFDIRKDWA*