AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0894720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894720 MtrunA17_Chr6g0478121 91.667 132 10 1 130 261 10 140 1.31e-81 241
Msa0894720 MtrunA17_Chr6g0478141 97.333 75 2 0 41 115 1 75 5.02e-49 156
Msa0894720 MtrunA17_Chr6g0478151 97.561 41 1 0 1 41 1 41 3.58e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894720 AT1G73350.2 56.981 265 55 7 1 261 1 210 2.43e-82 246
Msa0894720 AT1G73350.1 56.226 265 55 8 1 261 1 208 4.94e-79 238
Msa0894720 AT1G73350.7 51.556 225 52 6 41 261 1 172 1.66e-56 179
Msa0894720 AT1G73350.3 51.556 225 52 6 41 261 1 172 1.66e-56 179
Msa0894720 AT1G73350.6 48.889 225 56 7 41 261 1 170 4.71e-44 147
Msa0894720 AT1G73350.4 44.976 209 58 6 57 261 33 188 1.17e-33 120
Msa0894720 AT1G73350.5 44.976 209 58 6 57 261 58 213 3.45e-33 120

Find 73 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATGTATGAAACATTT+AGG 0.234169 6_1:-81132276 Msa0894720:three_prime_UTR
GATCGCTCCTCAACTTTCTT+TGG 0.244252 6_1:+81132552 None:intergenic
CTGATCCCACTCTTTGGCTT+TGG 0.285761 6_1:+81132814 None:intergenic
GCAGAAATCGTAGTTGATTA+TGG 0.293712 6_1:-81137643 Msa0894720:exon
AGAAAGGAAATGAACATAAA+AGG 0.308980 6_1:+81133911 None:intergenic
ATCAACCTGATCCCACTCTT+TGG 0.342722 6_1:+81132808 None:intergenic
ACCTTTGGGGTCGGTAAGAT+TGG 0.364856 6_1:+81137596 None:intergenic
AGAATGTTTGACTTGTTTAG+AGG 0.393853 6_1:-81132336 Msa0894720:three_prime_UTR
AAAAGAAGAAAATCAAGAAT+TGG 0.404001 6_1:-81132242 Msa0894720:three_prime_UTR
GAGCGTGGAGGTTATCTTCA+TGG 0.409638 6_1:-81134181 Msa0894720:CDS
GGCTTTGGCTCAACACGTAA+TGG 0.411633 6_1:+81132829 None:intergenic
GACAACGAGCAGTGTTTGTC+AGG 0.417843 6_1:-81132576 Msa0894720:CDS
GTAGAGGAACACCCAGTGTC+AGG 0.417871 6_1:-81132510 Msa0894720:CDS
CCTTCAAACCTCGGTCGCTT+AGG 0.424206 6_1:+81132669 None:intergenic
AAGAAGATAGATAGAGAGAA+TGG 0.425678 6_1:+81137690 None:intergenic
ATGATGCGCTTGATGGTAGA+TGG 0.432255 6_1:-81132393 Msa0894720:three_prime_UTR
ACTATATCTCAAGGAGCAAA+TGG 0.436920 6_1:-81134003 Msa0894720:CDS
TGTTTCTTTCACATACATCT+TGG 0.437831 6_1:-81133872 Msa0894720:CDS
GGCTTATTGCCTTCAAACCT+CGG 0.442397 6_1:+81132660 None:intergenic
AAGCAGATGCAAGAAGTTGC+TGG 0.449188 6_1:-81134205 Msa0894720:intron
GTTGAGGAGCGATCTTTGAC+TGG 0.458517 6_1:-81132543 Msa0894720:CDS
ATGATTGATGATGCGCTTGA+TGG 0.465595 6_1:-81132400 Msa0894720:exon
ACAGATAAGAAATTGGGTAA+AGG 0.470056 6_1:-81137465 Msa0894720:intron
GTATGAAACATTTAGGAAGA+AGG 0.470399 6_1:-81132269 Msa0894720:three_prime_UTR
CCTTCATGCAACCCTGACAC+TGG 0.490642 6_1:+81132498 None:intergenic
AGCAGATGCAAGAAGTTGCT+GGG 0.498435 6_1:-81134204 Msa0894720:intron
CCGGCAGAGTTATCAACCTT+AGG 0.500496 6_1:+81132465 None:intergenic
CCTAAGGTTGATAACTCTGC+CGG 0.502092 6_1:-81132465 Msa0894720:CDS
CTAAGGTTGATAACTCTGCC+GGG 0.511044 6_1:-81132464 Msa0894720:CDS
TGAGATGATAGACACTGAAA+GGG 0.523633 6_1:+81137751 None:intergenic
ATGAGATGATAGACACTGAA+AGG 0.523915 6_1:+81137750 None:intergenic
AAATCGTAGTTGATTATGGC+AGG 0.524807 6_1:-81137639 Msa0894720:exon
GTATTAAATTGTAGTGAAGA+TGG 0.526492 6_1:-81132311 Msa0894720:three_prime_UTR
CAAAGCCAAAGAGTGGGATC+AGG 0.528930 6_1:-81132813 Msa0894720:intron
GGCTCAACACGTAATGGTAA+AGG 0.534011 6_1:+81132835 None:intergenic
ATTATATATACCTTTGGGGT+CGG 0.541483 6_1:+81137587 None:intergenic
AATGGTAAAGGTACTGATGC+AGG 0.543680 6_1:+81132847 None:intergenic
CAAGAAGTTGCTGGGGAGCG+TGG 0.548648 6_1:-81134196 Msa0894720:CDS
TTTCCAACGCATGGTTGCAA+AGG 0.549380 6_1:-81137412 Msa0894720:intron
CTTCATGCAACCCTGACACT+GGG 0.549577 6_1:+81132499 None:intergenic
AGCGTGGAGGTTATCTTCAT+GGG 0.551295 6_1:-81134180 Msa0894720:CDS
GGAGGTTATCTTCATGGGCG+AGG 0.565839 6_1:-81134175 Msa0894720:CDS
CATCTGAGCTAGCATATGCC+AGG 0.571449 6_1:+81132430 None:intergenic
GCATCACTAGGAGCTTGCAT+TGG 0.574315 6_1:+81132639 None:intergenic
TAGTAGATCGTCACTGTCCA+AGG 0.576121 6_1:+81134022 None:intergenic
CGGGACTGTTATCTACAGAA+AGG 0.577203 6_1:+81133895 None:intergenic
TAACCTTTGCAACCATGCGT+TGG 0.581821 6_1:+81137409 None:intergenic
TGAAGGTGAAACTAAGCCTA+AGG 0.583433 6_1:-81132481 Msa0894720:CDS
CAGCAGCGAACACAGACTCC+AGG 0.587051 6_1:+81133828 None:intergenic
AGACGTTACTTTCCAACGCA+TGG 0.588343 6_1:-81137421 Msa0894720:CDS
CAAGGAGCAAATGGAAGCTG+AGG 0.592081 6_1:-81133994 Msa0894720:CDS
CCAGTGTCAGGGTTGCATGA+AGG 0.592986 6_1:-81132498 Msa0894720:CDS
TGCCAGGCCTAGTAATCCCC+CGG 0.596355 6_1:+81132446 None:intergenic
GAAAGGGGTAAAACGAGAAG+AGG 0.601894 6_1:+81137767 None:intergenic
GTCAGGACCAAAGAAAGTTG+AGG 0.609624 6_1:-81132559 Msa0894720:CDS
TAGAGGAACACCCAGTGTCA+GGG 0.615935 6_1:-81132509 Msa0894720:CDS
GTTGAGCCAAAGCCAAAGAG+TGG 0.615970 6_1:-81132820 Msa0894720:CDS
GAGAATTATATATACCTTTG+GGG 0.622345 6_1:+81137583 None:intergenic
TAAGGTTGATAACTCTGCCG+GGG 0.624952 6_1:-81132463 Msa0894720:CDS
AGATTAAACCTAAGCGACCG+AGG 0.626170 6_1:-81132677 Msa0894720:CDS
GACTGGATCGAAGAAAGTAG+AGG 0.629708 6_1:-81132526 Msa0894720:CDS
TGACGATCTACTATATCTCA+AGG 0.641457 6_1:-81134012 Msa0894720:CDS
TTGAGCCAAAGCCAAAGAGT+GGG 0.647588 6_1:-81132819 Msa0894720:CDS
GGTTATCTTCATGGGCGAGG+CGG 0.653241 6_1:-81134172 Msa0894720:intron
GCAGATGCAAGAAGTTGCTG+GGG 0.658673 6_1:-81134203 Msa0894720:intron
ACCAATCTTACCGACCCCAA+AGG 0.660181 6_1:-81137597 Msa0894720:intron
GAAGTTGCTGGGGAGCGTGG+AGG 0.665466 6_1:-81134193 Msa0894720:CDS
GATGTATGTGAAAGAAACAC+GGG 0.679520 6_1:+81133876 None:intergenic
AGATGTATGTGAAAGAAACA+CGG 0.681578 6_1:+81133875 None:intergenic
CTTTACCATTAGATACAGAG+CGG 0.686766 6_1:-81132890 Msa0894720:intron
TTAGTAATAGAAGCATCACT+AGG 0.690439 6_1:+81132627 None:intergenic
AAGGTTGATAACTCTGCCGG+GGG 0.699138 6_1:-81132462 Msa0894720:CDS
GAGATGATAGACACTGAAAG+GGG 0.702969 6_1:+81137752 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAATGAAAATTG+AGG + chr6_1:81132397-81132416 None:intergenic 10.0%
!!! TTTTGATTTTTATTGAATTT+TGG - chr6_1:81132445-81132464 Msa0894720:CDS 10.0%
!! AATAAAAAAAAATGCATAAT+TGG - chr6_1:81132807-81132826 Msa0894720:intron 10.0%
!! AGTTATATATATGTATTATT+TGG - chr6_1:81137038-81137057 Msa0894720:intron 10.0%
!!! TAATTTTACAGATAAGAAAT+TGG - chr6_1:81132483-81132502 Msa0894720:CDS 15.0%
!!! AATTTTACAGATAAGAAATT+GGG - chr6_1:81132484-81132503 Msa0894720:CDS 15.0%
!!! GCATTTTTTTTTATTTTTAC+TGG + chr6_1:81132802-81132821 None:intergenic 15.0%
!! TGAGAAATAAAAAAATAATG+AGG - chr6_1:81133101-81133120 Msa0894720:intron 15.0%
!!! AAATGTAAGTGTTTTATAAA+AGG + chr6_1:81135008-81135027 None:intergenic 15.0%
!!! ACTGTTTTTTCTAAAATAAA+AGG + chr6_1:81135186-81135205 None:intergenic 15.0%
!! ATCATAAATATATTCAATTC+TGG + chr6_1:81136232-81136251 None:intergenic 15.0%
!! AATATATTTATGATCAAGTA+AGG - chr6_1:81136238-81136257 Msa0894720:intron 15.0%
!! ATATATTTATGATCAAGTAA+GGG - chr6_1:81136239-81136258 Msa0894720:intron 15.0%
!! TCTCAAATAAAAGATTTAAA+AGG + chr6_1:81136423-81136442 None:intergenic 15.0%
!!! TTTAAATCTTTTATTTGAGA+AGG - chr6_1:81136423-81136442 Msa0894720:intron 15.0%
!! GAAGATAAATCATAAATTAT+TGG + chr6_1:81136450-81136469 None:intergenic 15.0%
!!! GTTTATTTTCATTTTCATTA+GGG - chr6_1:81136481-81136500 Msa0894720:intron 15.0%
!! TTTAAATGTATGAAACATTT+AGG - chr6_1:81137679-81137698 Msa0894720:five_prime_UTR 15.0%
!!! TTTTATTGAATTTTGGTTAC+TGG - chr6_1:81132452-81132471 Msa0894720:CDS 20.0%
!!! TTTATTGAATTTTGGTTACT+GGG - chr6_1:81132453-81132472 Msa0894720:CDS 20.0%
!! AAAAAAAATGCATAATTGGA+AGG - chr6_1:81132811-81132830 Msa0894720:intron 20.0%
!! TAAAAAAATAATGAGGTAGA+AGG - chr6_1:81133108-81133127 Msa0894720:intron 20.0%
!!! AATTTGCTACATTCTTAATA+GGG + chr6_1:81133176-81133195 None:intergenic 20.0%
!!! TTTATCATTTTCCATGTAAT+GGG + chr6_1:81133397-81133416 None:intergenic 20.0%
!!! ATTTATCATTTTCCATGTAA+TGG + chr6_1:81133398-81133417 None:intergenic 20.0%
!! TCAATGATTGGAATATATAA+AGG + chr6_1:81133515-81133534 None:intergenic 20.0%
!! TAAAAACTAATTGGTATTAG+TGG - chr6_1:81133741-81133760 Msa0894720:intron 20.0%
!! AACAAATTGATTAGAGAAAA+GGG + chr6_1:81134471-81134490 None:intergenic 20.0%
!!! TCTCGTTTTTTATACAATAT+TGG + chr6_1:81134795-81134814 None:intergenic 20.0%
!!! TTATAAAAGGTAAGGTATTT+CGG + chr6_1:81134995-81135014 None:intergenic 20.0%
!!! TAAGTGTTTTATAAAAGGTA+AGG + chr6_1:81135003-81135022 None:intergenic 20.0%
!!! TTTTTCTAAAATAAAAGGCA+TGG + chr6_1:81135181-81135200 None:intergenic 20.0%
!!! TTGAGTTTTCAACATTTATT+TGG + chr6_1:81135512-81135531 None:intergenic 20.0%
!! TATATTTATGATCAAGTAAG+GGG - chr6_1:81136240-81136259 Msa0894720:intron 20.0%
!! ACAGTGTAAAGATAATATTT+AGG - chr6_1:81136368-81136387 Msa0894720:intron 20.0%
!! TAAAGATAATATTTAGGAGT+GGG - chr6_1:81136374-81136393 Msa0894720:intron 20.0%
!! AATGAAAATGAAAATAAACG+AGG + chr6_1:81136480-81136499 None:intergenic 20.0%
!!! CGTTTATTTTCATTTTCATT+AGG - chr6_1:81136480-81136499 Msa0894720:intron 20.0%
!! AGAATTGATTATATCATGTT+TGG - chr6_1:81136554-81136573 Msa0894720:intron 20.0%
!! CAGAATTTAACAATAACTTT+AGG - chr6_1:81136656-81136675 Msa0894720:intron 20.0%
!!! ATCTATATTTTTTGCAATAC+AGG - chr6_1:81137227-81137246 Msa0894720:intron 20.0%
!! AAAAGAAGAAAATCAAGAAT+TGG - chr6_1:81137713-81137732 Msa0894720:five_prime_UTR 20.0%
! GAGAATTATATATACCTTTG+GGG + chr6_1:81132375-81132394 None:intergenic 25.0%
! GGAGAATTATATATACCTTT+GGG + chr6_1:81132376-81132395 None:intergenic 25.0%
! AGGAGAATTATATATACCTT+TGG + chr6_1:81132377-81132396 None:intergenic 25.0%
! AGAAGATATACTTACTTACT+TGG - chr6_1:81132719-81132738 Msa0894720:intron 25.0%
!! GAATAAGCTTTGTAATTTGT+AGG - chr6_1:81133135-81133154 Msa0894720:intron 25.0%
!!! CAATTTGCTACATTCTTAAT+AGG + chr6_1:81133177-81133196 None:intergenic 25.0%
! CTATTAAGAATGTAGCAAAT+TGG - chr6_1:81133175-81133194 Msa0894720:intron 25.0%
! TTCTTCTTTGATTGTGTATT+CGG - chr6_1:81133221-81133240 Msa0894720:intron 25.0%
! GATTAATATAACCCATTACA+TGG - chr6_1:81133383-81133402 Msa0894720:intron 25.0%
!! AGTTTTTACTGTGGTTTTTT+TGG + chr6_1:81133729-81133748 None:intergenic 25.0%
! AAACCACAGTAAAAACTAAT+TGG - chr6_1:81133732-81133751 Msa0894720:intron 25.0%
!!! ATACCAATTAGTTTTTACTG+TGG + chr6_1:81133738-81133757 None:intergenic 25.0%
!! TTCTTTACATGATTCAGTTT+TGG - chr6_1:81134126-81134145 Msa0894720:intron 25.0%
!! TCTTTACATGATTCAGTTTT+GGG - chr6_1:81134127-81134146 Msa0894720:intron 25.0%
! TACCAATTAATGCAGTATAA+GGG - chr6_1:81134211-81134230 Msa0894720:intron 25.0%
! GGAAATAGTAAATGATACTA+TGG - chr6_1:81134275-81134294 Msa0894720:intron 25.0%
! TAGTAAATGATACTATGGAA+AGG - chr6_1:81134280-81134299 Msa0894720:intron 25.0%
! AGTAAATGATACTATGGAAA+GGG - chr6_1:81134281-81134300 Msa0894720:intron 25.0%
! AACAAGTTTACAGGAAAATA+AGG - chr6_1:81134318-81134337 Msa0894720:intron 25.0%
! CCAATGATTGCAATATATAA+CGG + chr6_1:81134402-81134421 None:intergenic 25.0%
! CAACAAATTGATTAGAGAAA+AGG + chr6_1:81134472-81134491 None:intergenic 25.0%
!! CTTTTCTCTAATCAATTTGT+TGG - chr6_1:81134470-81134489 Msa0894720:intron 25.0%
!!! ACCATAACAAGTTGTTTTTT+TGG - chr6_1:81134528-81134547 Msa0894720:intron 25.0%
!!! CCATAACAAGTTGTTTTTTT+GGG - chr6_1:81134529-81134548 Msa0894720:intron 25.0%
! ATTGTATAAAAAACGAGATC+TGG - chr6_1:81134797-81134816 Msa0894720:intron 25.0%
! AATTAGGTTAAACTTGTAGA+AGG - chr6_1:81134937-81134956 Msa0894720:intron 25.0%
!! TTCAATGAGCTAATTACTTT+TGG + chr6_1:81135559-81135578 None:intergenic 25.0%
! AAGTAATTAGCTCATTGAAT+TGG - chr6_1:81135560-81135579 Msa0894720:intron 25.0%
! AGAAAGGAAATGAACATAAA+AGG + chr6_1:81136047-81136066 None:intergenic 25.0%
! TTCTTAAAACTGCTTGAAAA+CGG - chr6_1:81136193-81136212 Msa0894720:intron 25.0%
! GTAAAGATAATATTTAGGAG+TGG - chr6_1:81136373-81136392 Msa0894720:intron 25.0%
! AAAATGAAAATAAACGAGGA+TGG + chr6_1:81136476-81136495 None:intergenic 25.0%
!!! TGAAATACTGGTTTCAATTT+TGG - chr6_1:81136506-81136525 Msa0894720:intron 25.0%
! TTCAAATAGAATCCACTTTA+AGG - chr6_1:81136700-81136719 Msa0894720:intron 25.0%
! ATAAGTAGCAATAACTTATC+AGG - chr6_1:81136732-81136751 Msa0894720:intron 25.0%
!!! GAGATTAGATTTTTTTATCG+TGG - chr6_1:81136846-81136865 Msa0894720:intron 25.0%
!! TTTTCCTTTTTCCTATTTCA+TGG - chr6_1:81136950-81136969 Msa0894720:intron 25.0%
! AAATATAGCTTCCATGAAAT+AGG + chr6_1:81136964-81136983 None:intergenic 25.0%
! GTATTAAATTGTAGTGAAGA+TGG - chr6_1:81137644-81137663 Msa0894720:exon 25.0%
AAGAAGATAGATAGAGAGAA+TGG + chr6_1:81132268-81132287 None:intergenic 30.0%
!! ATTATATATACCTTTGGGGT+CGG + chr6_1:81132371-81132390 None:intergenic 30.0%
ACAGATAAGAAATTGGGTAA+AGG - chr6_1:81132490-81132509 Msa0894720:CDS 30.0%
AAAAAAAACAGAGAGAGAGA+AGG + chr6_1:81132585-81132604 None:intergenic 30.0%
CTTCAACTACAGTAACAAAT+AGG + chr6_1:81132621-81132640 None:intergenic 30.0%
! AGATATATGTTTTGCAATCG+CGG - chr6_1:81132929-81132948 Msa0894720:intron 30.0%
ATTCTTAATAGGGAGTTCAA+AGG + chr6_1:81133166-81133185 None:intergenic 30.0%
TCTTCTTTGATTGTGTATTC+GGG - chr6_1:81133222-81133241 Msa0894720:intron 30.0%
! TACTGCATTAATTGGTAGTT+CGG + chr6_1:81133281-81133300 None:intergenic 30.0%
TACCAATTAATGCAGTAAAC+AGG - chr6_1:81133284-81133303 Msa0894720:intron 30.0%
TTCCTGTTTACTGCATTAAT+TGG + chr6_1:81133289-81133308 None:intergenic 30.0%
TGTAAATAGTAATCAGACCA+TGG - chr6_1:81133347-81133366 Msa0894720:intron 30.0%
GTAAATAGTAATCAGACCAT+GGG - chr6_1:81133348-81133367 Msa0894720:intron 30.0%
GGAAGTTTGATAAAAGAAGT+GGG + chr6_1:81133494-81133513 None:intergenic 30.0%
AGGAAGTTTGATAAAAGAAG+TGG + chr6_1:81133495-81133514 None:intergenic 30.0%
GTCGAAAATATGTCAATGAT+TGG + chr6_1:81133527-81133546 None:intergenic 30.0%
!! TTTTCTATGAGAGGTTTTGA+CGG + chr6_1:81133618-81133637 None:intergenic 30.0%
AAACCTCTCATAGAAAACAA+CGG - chr6_1:81133621-81133640 Msa0894720:intron 30.0%
! TGACTTCTTTAGAGATTTCT+CGG + chr6_1:81133661-81133680 None:intergenic 30.0%
AACAACAACACTGATAATCA+CGG - chr6_1:81133837-81133856 Msa0894720:CDS 30.0%
AGAATCATCACAAGAGAATA+TGG - chr6_1:81133904-81133923 Msa0894720:CDS 30.0%
TTACAATGGTACTTTCATCA+AGG + chr6_1:81134165-81134184 None:intergenic 30.0%
!! TGATGAAAGTACCATTGTAA+TGG - chr6_1:81134165-81134184 Msa0894720:intron 30.0%
AAGTACCATTGTAATGGTTA+TGG - chr6_1:81134171-81134190 Msa0894720:intron 30.0%
! ATTGGTAGTTCAGATCTTTA+AGG + chr6_1:81134198-81134217 None:intergenic 30.0%
CTACCAATTAATGCAGTATA+AGG - chr6_1:81134210-81134229 Msa0894720:intron 30.0%
TTCCCTTATACTGCATTAAT+TGG + chr6_1:81134216-81134235 None:intergenic 30.0%
ATACTATGGAAAGGGAAATA+TGG - chr6_1:81134289-81134308 Msa0894720:intron 30.0%
! TGGATTGATAACAAGTTTAC+AGG - chr6_1:81134309-81134328 Msa0894720:intron 30.0%
CCGTTATATATTGCAATCAT+TGG - chr6_1:81134399-81134418 Msa0894720:intron 30.0%
!! CCCAAAAAAACAACTTGTTA+TGG + chr6_1:81134532-81134551 None:intergenic 30.0%
!! CGTGTTTTGTTAAAAGAAGA+AGG + chr6_1:81135107-81135126 None:intergenic 30.0%
ATAATCGATGACAAGACAAT+AGG + chr6_1:81135462-81135481 None:intergenic 30.0%
TGTAAAAATAGAACTTCCGA+TGG + chr6_1:81135488-81135507 None:intergenic 30.0%
AGATGTATGTGAAAGAAACA+CGG + chr6_1:81136083-81136102 None:intergenic 30.0%
TGTTTCTTTCACATACATCT+TGG - chr6_1:81136083-81136102 Msa0894720:intron 30.0%
! AACATACTAGTTTGACTGAA+TGG + chr6_1:81136283-81136302 None:intergenic 30.0%
TTCAGTCAAACTAGTATGTT+TGG - chr6_1:81136283-81136302 Msa0894720:intron 30.0%
TTCATTAGGGATTGAAATAC+TGG - chr6_1:81136494-81136513 Msa0894720:intron 30.0%
!!! AATACTGGTTTCAATTTTGG+AGG - chr6_1:81136509-81136528 Msa0894720:intron 30.0%
! AAGCTAGAATTTGTAGCTTT+TGG + chr6_1:81136682-81136701 None:intergenic 30.0%
TATCAGAATTCTCCTTAAAG+TGG + chr6_1:81136715-81136734 None:intergenic 30.0%
CTTATCAGGCAAACTATTTA+AGG - chr6_1:81136746-81136765 Msa0894720:intron 30.0%
TAAGGAGAATTTGTAGCTAT+TGG - chr6_1:81136764-81136783 Msa0894720:intron 30.0%
! TGTTAAGATTGCTACTTATC+AGG - chr6_1:81136814-81136833 Msa0894720:intron 30.0%
TATCGTGGACAAATCTTAAT+AGG - chr6_1:81136861-81136880 Msa0894720:intron 30.0%
! AAAAAAGCTTTGGTTTCATG+TGG + chr6_1:81136917-81136936 None:intergenic 30.0%
ATCACGTGTTAAAAAAGCTT+TGG + chr6_1:81136927-81136946 None:intergenic 30.0%
!! TTAGTAATAGAAGCATCACT+AGG + chr6_1:81137331-81137350 None:intergenic 30.0%
!! AGAATGTTTGACTTGTTTAG+AGG - chr6_1:81137619-81137638 Msa0894720:CDS 30.0%
GTATGAAACATTTAGGAAGA+AGG - chr6_1:81137686-81137705 Msa0894720:five_prime_UTR 30.0%
AAAAAAAAACTGGCACATCA+GGG + chr6_1:81137799-81137818 None:intergenic 30.0%
TAAAAAAAAACTGGCACATC+AGG + chr6_1:81137800-81137819 None:intergenic 30.0%
TGAGATGATAGACACTGAAA+GGG + chr6_1:81132207-81132226 None:intergenic 35.0%
ATGAGATGATAGACACTGAA+AGG + chr6_1:81132208-81132227 None:intergenic 35.0%
GCAGAAATCGTAGTTGATTA+TGG - chr6_1:81132312-81132331 Msa0894720:three_prime_UTR 35.0%
AAATCGTAGTTGATTATGGC+AGG - chr6_1:81132316-81132335 Msa0894720:three_prime_UTR 35.0%
GGAATTACATGTGTTAGTGT+CGG - chr6_1:81132832-81132851 Msa0894720:CDS 35.0%
! AAGGTTGATCTCTTAGCATA+TGG + chr6_1:81132892-81132911 None:intergenic 35.0%
CATATATCTCCTCACTCATT+AGG + chr6_1:81132918-81132937 None:intergenic 35.0%
ATCAAAGAAGAAAACCAGCA+AGG + chr6_1:81133213-81133232 None:intergenic 35.0%
CTTCTTTGATTGTGTATTCG+GGG - chr6_1:81133223-81133242 Msa0894720:intron 35.0%
TTCTTTGATTGTGTATTCGG+GGG - chr6_1:81133224-81133243 Msa0894720:intron 35.0%
AATCAATATTTCCCTTCCCA+TGG + chr6_1:81133367-81133386 None:intergenic 35.0%
!! ATAGAAGGTACTTAGAGAGA+AGG - chr6_1:81133440-81133459 Msa0894720:intron 35.0%
AGTTTGATAAAAGAAGTGGG+TGG + chr6_1:81133491-81133510 None:intergenic 35.0%
GATGAGTAATAGCATTGTGA+TGG - chr6_1:81133590-81133609 Msa0894720:intron 35.0%
! ATTTCTCGGTTTCGATTTTG+GGG + chr6_1:81133647-81133666 None:intergenic 35.0%
! GATTTCTCGGTTTCGATTTT+GGG + chr6_1:81133648-81133667 None:intergenic 35.0%
! AGATTTCTCGGTTTCGATTT+TGG + chr6_1:81133649-81133668 None:intergenic 35.0%
CTAATTGGTATTAGTGGTAG+CGG - chr6_1:81133747-81133766 Msa0894720:intron 35.0%
!! AGTGTTGTTGTTTGACGATT+TGG + chr6_1:81133829-81133848 None:intergenic 35.0%
TTATTACGTTGTTGTCACTC+AGG + chr6_1:81133885-81133904 None:intergenic 35.0%
AGAAAGCCATAGATGATGTT+CGG + chr6_1:81133960-81133979 None:intergenic 35.0%
!!! ATGATTCAGTTTTGGGAGTT+GGG - chr6_1:81134134-81134153 Msa0894720:intron 35.0%
AAGGTCCATAACCATTACAA+TGG + chr6_1:81134179-81134198 None:intergenic 35.0%
AGAGATTCCTTCATTCCAAT+TGG + chr6_1:81134239-81134258 None:intergenic 35.0%
TCTCTGTATCACTTTCTCAA+TGG - chr6_1:81134254-81134273 Msa0894720:intron 35.0%
TAACGGAAGTTTGAGAAGAT+AGG + chr6_1:81134385-81134404 None:intergenic 35.0%
TCTGTTAGCAATTCTCTGAA+TGG - chr6_1:81134429-81134448 Msa0894720:intron 35.0%
!! TCAATTTGTTGGCTCTACTT+TGG - chr6_1:81134481-81134500 Msa0894720:intron 35.0%
ACGACATAAACAGTGTTTAG+TGG - chr6_1:81134560-81134579 Msa0894720:intron 35.0%
CTTGGTTACAATGATCTACT+TGG + chr6_1:81134648-81134667 None:intergenic 35.0%
CAAGTAGATCATTGTAACCA+AGG - chr6_1:81134646-81134665 Msa0894720:intron 35.0%
GTAGATTGAGAAGAGAAACA+CGG - chr6_1:81134828-81134847 Msa0894720:intron 35.0%
TAGAAGGCTTATCTCTTGTT+TGG - chr6_1:81134953-81134972 Msa0894720:intron 35.0%
! AGAAGGCTTATCTCTTGTTT+GGG - chr6_1:81134954-81134973 Msa0894720:intron 35.0%
! AGGTAAGGTATTTCGGTATT+GGG + chr6_1:81134988-81135007 None:intergenic 35.0%
! AAGGTAAGGTATTTCGGTAT+TGG + chr6_1:81134989-81135008 None:intergenic 35.0%
TTACAACATTGCCTTTGAGT+AGG - chr6_1:81135324-81135343 Msa0894720:intron 35.0%
TTGATTGTAACCGCTTATGT+AGG - chr6_1:81135431-81135450 Msa0894720:intron 35.0%
TGATTGTAACCGCTTATGTA+GGG - chr6_1:81135432-81135451 Msa0894720:intron 35.0%
! TGTCATCGATTATTGTCCAT+CGG - chr6_1:81135469-81135488 Msa0894720:intron 35.0%
TGACATTCGTTCTCAATTGA+TGG - chr6_1:81135591-81135610 Msa0894720:intron 35.0%
GACATTCGTTCTCAATTGAT+GGG - chr6_1:81135592-81135611 Msa0894720:intron 35.0%
! AACAGACAAACAAAGCATTC+TGG + chr6_1:81135632-81135651 None:intergenic 35.0%
! AAAGTTTAAGTTTGCAGCCT+TGG - chr6_1:81135916-81135935 Msa0894720:intron 35.0%
TGACGATCTACTATATCTCA+AGG - chr6_1:81135943-81135962 Msa0894720:intron 35.0%
ACTATATCTCAAGGAGCAAA+TGG - chr6_1:81135952-81135971 Msa0894720:intron 35.0%
GATGTATGTGAAAGAAACAC+GGG + chr6_1:81136082-81136101 None:intergenic 35.0%
!!! CAGACACAATTTTTTGTTCC+TGG - chr6_1:81136109-81136128 Msa0894720:intron 35.0%
ATTTATGATCAAGTAAGGGG+AGG - chr6_1:81136243-81136262 Msa0894720:intron 35.0%
TCAAACTAGTATGTTTGGTC+TGG - chr6_1:81136288-81136307 Msa0894720:intron 35.0%
GCTTCCATGAAATAGGAAAA+AGG + chr6_1:81136957-81136976 None:intergenic 35.0%
CTTTACCATTAGATACAGAG+CGG - chr6_1:81137065-81137084 Msa0894720:intron 35.0%
ATACACTGAAACCAGAAAAC+AGG + chr6_1:81137200-81137219 None:intergenic 35.0%
GAGATGATAGACACTGAAAG+GGG + chr6_1:81132206-81132225 None:intergenic 40.0%
CGTCTGTGTTAGTACTTCAT+AGG + chr6_1:81132747-81132766 None:intergenic 40.0%
AACCTTTCACCTAATGAGTG+AGG - chr6_1:81132906-81132925 Msa0894720:intron 40.0%
! ATATGTTTTGCAATCGCGGT+TGG - chr6_1:81132933-81132952 Msa0894720:intron 40.0%
CTTAATAGGGAGTTCAAAGG+AGG + chr6_1:81133163-81133182 None:intergenic 40.0%
ATGCAGTAAACAGGAACCAA+TGG - chr6_1:81133293-81133312 Msa0894720:intron 40.0%
TGCAGTAAACAGGAACCAAT+GGG - chr6_1:81133294-81133313 Msa0894720:intron 40.0%
AGAAATCCCTTCATTCCCAT+TGG + chr6_1:81133312-81133331 None:intergenic 40.0%
ATAGTAATCAGACCATGGGA+AGG - chr6_1:81133352-81133371 Msa0894720:intron 40.0%
TAGTAATCAGACCATGGGAA+GGG - chr6_1:81133353-81133372 Msa0894720:intron 40.0%
TCTAAGTACCTTCTATTCCC+TGG + chr6_1:81133436-81133455 None:intergenic 40.0%
ATAAAAGAAGTGGGTGGAAG+TGG + chr6_1:81133485-81133504 None:intergenic 40.0%
! CATTGACATATTTTCGACCG+AGG - chr6_1:81133529-81133548 Msa0894720:intron 40.0%
ACTCAGTCTGGTGATTATAG+TGG - chr6_1:81133568-81133587 Msa0894720:intron 40.0%
AAAGAAGTCAGACTTGTCAG+AGG - chr6_1:81133671-81133690 Msa0894720:intron 40.0%
AAGAAGTCAGACTTGTCAGA+GGG - chr6_1:81133672-81133691 Msa0894720:intron 40.0%
TCGAATGCAAGGAACATATC+AGG - chr6_1:81133798-81133817 Msa0894720:intron 40.0%
AATGCAAGGAACATATCAGG+TGG - chr6_1:81133801-81133820 Msa0894720:intron 40.0%
AGTCAGGGAGAAGAACTTAA+AGG + chr6_1:81133986-81134005 None:intergenic 40.0%
AAGTTCTTCTCCCTGACTTA+AGG - chr6_1:81133988-81134007 Msa0894720:CDS 40.0%
!! TAGGAAGTATCAATCTCCTC+TGG - chr6_1:81134066-81134085 Msa0894720:intron 40.0%
!!! CATGATTCAGTTTTGGGAGT+TGG - chr6_1:81134133-81134152 Msa0894720:intron 40.0%
!!! TGATTCAGTTTTGGGAGTTG+GGG - chr6_1:81134135-81134154 Msa0894720:intron 40.0%
TGCAGTATAAGGGAACCAAT+TGG - chr6_1:81134221-81134240 Msa0894720:intron 40.0%
AAGGGAACCAATTGGAATGA+AGG - chr6_1:81134229-81134248 Msa0894720:intron 40.0%
!!! GTCGTTTTTGGTGATTTCGT+GGG - chr6_1:81134751-81134770 Msa0894720:intron 40.0%
!!! CTTGTTTTCTGTTTCTGCTG+CGG - chr6_1:81134883-81134902 Msa0894720:intron 40.0%
GAAGAGGACTAGGTCAAATT+AGG - chr6_1:81134921-81134940 Msa0894720:intron 40.0%
! TATTTCGGTATTGGGCCTTA+GGG + chr6_1:81134980-81134999 None:intergenic 40.0%
GTTCGTAAGAACCTACTCAA+AGG + chr6_1:81135338-81135357 None:intergenic 40.0%
CGGTTACAATCAATGTAGTC+AGG + chr6_1:81135424-81135443 None:intergenic 40.0%
ATAGGTATGCCCTACATAAG+CGG + chr6_1:81135444-81135463 None:intergenic 40.0%
TTGTATCAACCAGCCAATAG+AGG + chr6_1:81135732-81135751 None:intergenic 40.0%
GTGTACTTGCATAGCTATCT+TGG + chr6_1:81136350-81136369 None:intergenic 40.0%
CGCTCTGTATCTAATGGTAA+AGG + chr6_1:81137067-81137086 None:intergenic 40.0%
!! AATGGTAAAGGTACTGATGC+AGG + chr6_1:81137111-81137130 None:intergenic 40.0%
AAACCAGAAAACAGGCATAG+GGG + chr6_1:81137192-81137211 None:intergenic 40.0%
GAAACCAGAAAACAGGCATA+GGG + chr6_1:81137193-81137212 None:intergenic 40.0%
TGAAACCAGAAAACAGGCAT+AGG + chr6_1:81137194-81137213 None:intergenic 40.0%
TGAAGGTGAAACTAAGCCTA+AGG - chr6_1:81137474-81137493 Msa0894720:intron 40.0%
!! ATGATTGATGATGCGCTTGA+TGG - chr6_1:81137555-81137574 Msa0894720:intron 40.0%
GAAAGGGGTAAAACGAGAAG+AGG + chr6_1:81132191-81132210 None:intergenic 45.0%
! AGACGTTACTTTCCAACGCA+TGG - chr6_1:81132534-81132553 Msa0894720:CDS 45.0%
TTTCCAACGCATGGTTGCAA+AGG - chr6_1:81132543-81132562 Msa0894720:CDS 45.0%
TAACCTTTGCAACCATGCGT+TGG + chr6_1:81132549-81132568 None:intergenic 45.0%
ACTAACACAGACGTGAACAC+CGG - chr6_1:81132754-81132773 Msa0894720:intron 45.0%
TAATGTGTCAGTGTCGTGTC+CGG + chr6_1:81132776-81132795 None:intergenic 45.0%
! TTAGTGTCGGACACTGACAT+GGG - chr6_1:81132845-81132864 Msa0894720:CDS 45.0%
!! TGGGTTGGTGCTATAGAGAT+TGG - chr6_1:81132864-81132883 Msa0894720:CDS 45.0%
CTCCTCACTCATTAGGTGAA+AGG + chr6_1:81132911-81132930 None:intergenic 45.0%
AGCCACTATTGGACAACACT+TGG - chr6_1:81133070-81133089 Msa0894720:intron 45.0%
!! GGAGCTTTGTTTATCCTTGC+TGG - chr6_1:81133196-81133215 Msa0894720:intron 45.0%
ACAGGAACCAATGGGAATGA+AGG - chr6_1:81133302-81133321 Msa0894720:intron 45.0%
CAGGAACCAATGGGAATGAA+GGG - chr6_1:81133303-81133322 Msa0894720:intron 45.0%
AATCTGCTAGAAGCCATACC+AGG - chr6_1:81133415-81133434 Msa0894720:intron 45.0%
ATCTGCTAGAAGCCATACCA+GGG - chr6_1:81133416-81133435 Msa0894720:intron 45.0%
AAGCCATACCAGGGAATAGA+AGG - chr6_1:81133425-81133444 Msa0894720:intron 45.0%
GTACCTTCTATTCCCTGGTA+TGG + chr6_1:81133431-81133450 None:intergenic 45.0%
! TGACATATTTTCGACCGAGG+TGG - chr6_1:81133532-81133551 Msa0894720:intron 45.0%
AGCTGTACTCTAACTCAGTC+TGG - chr6_1:81133556-81133575 Msa0894720:intron 45.0%
GAGTCTATAGACTTAACGCC+AGG - chr6_1:81133774-81133793 Msa0894720:intron 45.0%
ATGTTCCTTGCATTCGAACC+TGG + chr6_1:81133795-81133814 None:intergenic 45.0%
CAACACTGATAATCACGGTC+TGG - chr6_1:81133842-81133861 Msa0894720:CDS 45.0%
ATGTTCGGAGATGCATCTTG+GGG + chr6_1:81133945-81133964 None:intergenic 45.0%
GATGTTCGGAGATGCATCTT+GGG + chr6_1:81133946-81133965 None:intergenic 45.0%
TGATGTTCGGAGATGCATCT+TGG + chr6_1:81133947-81133966 None:intergenic 45.0%
GCATCTCCGAACATCATCTA+TGG - chr6_1:81133951-81133970 Msa0894720:CDS 45.0%
ATCAATCTCCTCTGGCAACA+AGG - chr6_1:81134074-81134093 Msa0894720:intron 45.0%
AATTGTCACCTTGTTGCCAG+AGG + chr6_1:81134085-81134104 None:intergenic 45.0%
GAAGATAGGTGTGTGTGTGT+GGG + chr6_1:81134371-81134390 None:intergenic 45.0%
AGAAGATAGGTGTGTGTGTG+TGG + chr6_1:81134372-81134391 None:intergenic 45.0%
TCATTGTAACCAAGGTAGCC+AGG - chr6_1:81134654-81134673 Msa0894720:intron 45.0%
!! ACTTTGCTCTGCGTCGTTTT+TGG - chr6_1:81134739-81134758 Msa0894720:intron 45.0%
!!! CGTCGTTTTTGGTGATTTCG+TGG - chr6_1:81134750-81134769 Msa0894720:intron 45.0%
!!! GTGGGCAGATCGAGTTTTTT+TGG - chr6_1:81134769-81134788 Msa0894720:intron 45.0%
! TATCTCTTGTTTGGGCCCTA+AGG - chr6_1:81134962-81134981 Msa0894720:intron 45.0%
! GTATTTCGGTATTGGGCCTT+AGG + chr6_1:81134981-81135000 None:intergenic 45.0%
TAAAGTCGGGGAACGTAACA+CGG + chr6_1:81135360-81135379 None:intergenic 45.0%
TGGTGAAGGGATGTAAAGTC+GGG + chr6_1:81135373-81135392 None:intergenic 45.0%
CTGGTGAAGGGATGTAAAGT+CGG + chr6_1:81135374-81135393 None:intergenic 45.0%
AGTTCCTACGTAGGTTCGAT+TGG + chr6_1:81135397-81135416 None:intergenic 45.0%
AAGCAGATGCAAGAAGTTGC+TGG - chr6_1:81135750-81135769 Msa0894720:intron 45.0%
AGCAGATGCAAGAAGTTGCT+GGG - chr6_1:81135751-81135770 Msa0894720:intron 45.0%
AGCGTGGAGGTTATCTTCAT+GGG - chr6_1:81135775-81135794 Msa0894720:intron 45.0%
AGATGAAAGCAAGAGGTGAG+GGG + chr6_1:81135856-81135875 None:intergenic 45.0%
CAGATGAAAGCAAGAGGTGA+GGG + chr6_1:81135857-81135876 None:intergenic 45.0%
TAGTAGATCGTCACTGTCCA+AGG + chr6_1:81135936-81135955 None:intergenic 45.0%
CGGGACTGTTATCTACAGAA+AGG + chr6_1:81136063-81136082 None:intergenic 45.0%
TATGATCAAGTAAGGGGAGG+TGG - chr6_1:81136246-81136265 Msa0894720:intron 45.0%
GGAGGTCAAAAGTGATCTAG+AGG - chr6_1:81136527-81136546 Msa0894720:intron 45.0%
!! CAGTCTATGCTCGTTTTTGC+TGG - chr6_1:81137014-81137033 Msa0894720:intron 45.0%
ACTTGCCGCTCTGTATCTAA+TGG + chr6_1:81137073-81137092 None:intergenic 45.0%
GGCTCAACACGTAATGGTAA+AGG + chr6_1:81137123-81137142 None:intergenic 45.0%
! TTACCCCTATGCCTGTTTTC+TGG - chr6_1:81137186-81137205 Msa0894720:intron 45.0%
AGATTAAACCTAAGCGACCG+AGG - chr6_1:81137278-81137297 Msa0894720:intron 45.0%
GGCTTATTGCCTTCAAACCT+CGG + chr6_1:81137298-81137317 None:intergenic 45.0%
GTCAGGACCAAAGAAAGTTG+AGG - chr6_1:81137396-81137415 Msa0894720:intron 45.0%
GATCGCTCCTCAACTTTCTT+TGG + chr6_1:81137406-81137425 None:intergenic 45.0%
GACTGGATCGAAGAAAGTAG+AGG - chr6_1:81137429-81137448 Msa0894720:CDS 45.0%
!! CCTAAGGTTGATAACTCTGC+CGG - chr6_1:81137490-81137509 Msa0894720:intron 45.0%
!! CTAAGGTTGATAACTCTGCC+GGG - chr6_1:81137491-81137510 Msa0894720:intron 45.0%
!! TAAGGTTGATAACTCTGCCG+GGG - chr6_1:81137492-81137511 Msa0894720:intron 45.0%
! ATGATGCGCTTGATGGTAGA+TGG - chr6_1:81137562-81137581 Msa0894720:intron 45.0%
!!! TTTTTTTTTTAATGTTTTTA+CGG - chr6_1:81132406-81132425 Msa0894720:exon 5.0%
ACCAATCTTACCGACCCCAA+AGG - chr6_1:81132358-81132377 Msa0894720:three_prime_UTR 50.0%
!! ACCTTTGGGGTCGGTAAGAT+TGG + chr6_1:81132362-81132381 None:intergenic 50.0%
! GTTAGTGTCGGACACTGACA+TGG - chr6_1:81132844-81132863 Msa0894720:CDS 50.0%
! TGTTTTGCAATCGCGGTTGG+CGG - chr6_1:81132936-81132955 Msa0894720:intron 50.0%
GGGAAAATTCTGCCACGCTA+TGG - chr6_1:81132957-81132976 Msa0894720:intron 50.0%
CTGCACGATAGAGCCACTAT+TGG - chr6_1:81133059-81133078 Msa0894720:intron 50.0%
! CGCCAAGTGTTGTCCAATAG+TGG + chr6_1:81133075-81133094 None:intergenic 50.0%
!! GGGGACTCTTTAAAGCGTTG+TGG - chr6_1:81133243-81133262 Msa0894720:intron 50.0%
TTAGAGTACAGCTGCCACCT+CGG + chr6_1:81133549-81133568 None:intergenic 50.0%
!! GGGCCGTTGTTTTCTATGAG+AGG + chr6_1:81133627-81133646 None:intergenic 50.0%
TAACGCCAGGTTCGAATGCA+AGG - chr6_1:81133787-81133806 Msa0894720:intron 50.0%
CGTTGTTGTCACTCAGGTCT+CGG + chr6_1:81133879-81133898 None:intergenic 50.0%
!! TCCCTGACTTAAGGTACTGC+TGG - chr6_1:81133997-81134016 Msa0894720:CDS 50.0%
CCCAGCAGTACCTTAAGTCA+GGG + chr6_1:81134001-81134020 None:intergenic 50.0%
!! CCCTGACTTAAGGTACTGCT+GGG - chr6_1:81133998-81134017 Msa0894720:CDS 50.0%
ACCCAGCAGTACCTTAAGTC+AGG + chr6_1:81134002-81134021 None:intergenic 50.0%
!! ACTTAAGGTACTGCTGGGTC+AGG - chr6_1:81134003-81134022 Msa0894720:CDS 50.0%
!! AAGAGCGTCGTTCAACGTCT+AGG - chr6_1:81134047-81134066 Msa0894720:intron 50.0%
TGGGTGGTTGGGGATTAAGT+CGG + chr6_1:81134352-81134371 None:intergenic 50.0%
CTATGGGGAAGAAGAGGACT+AGG - chr6_1:81134911-81134930 Msa0894720:intron 50.0%
TGACCTGTGCATTCAGAGCA+AGG + chr6_1:81135133-81135152 None:intergenic 50.0%
GGTGAAGGGATGTAAAGTCG+GGG + chr6_1:81135372-81135391 None:intergenic 50.0%
! AGGTTCGATTGGCTGGTGAA+GGG + chr6_1:81135386-81135405 None:intergenic 50.0%
! TAGGTTCGATTGGCTGGTGA+AGG + chr6_1:81135387-81135406 None:intergenic 50.0%
TCAGGATCGAGTTCCTACGT+AGG + chr6_1:81135406-81135425 None:intergenic 50.0%
GGGATCTTGGCTTCCTCTAT+TGG - chr6_1:81135716-81135735 Msa0894720:intron 50.0%
TCTTGGCTTCCTCTATTGGC+TGG - chr6_1:81135720-81135739 Msa0894720:intron 50.0%
GCAGATGCAAGAAGTTGCTG+GGG - chr6_1:81135752-81135771 Msa0894720:intron 50.0%
GAGCGTGGAGGTTATCTTCA+TGG - chr6_1:81135774-81135793 Msa0894720:intron 50.0%
GATGAAAGCAAGAGGTGAGG+GGG + chr6_1:81135855-81135874 None:intergenic 50.0%
CCAGATGAAAGCAAGAGGTG+AGG + chr6_1:81135858-81135877 None:intergenic 50.0%
CCTCACCTCTTGCTTTCATC+TGG - chr6_1:81135855-81135874 Msa0894720:intron 50.0%
GAGCACCAGATGAAAGCAAG+AGG + chr6_1:81135863-81135882 None:intergenic 50.0%
CAAGGAGCAAATGGAAGCTG+AGG - chr6_1:81135961-81135980 Msa0894720:intron 50.0%
TCCTGCGTCGCACTGAAAAA+CGG - chr6_1:81135999-81136018 Msa0894720:intron 50.0%
! GGCTTTGGCTCAACACGTAA+TGG + chr6_1:81137129-81137148 None:intergenic 50.0%
AACAGGCATAGGGGTAAGCT+GGG + chr6_1:81137183-81137202 None:intergenic 50.0%
AAACAGGCATAGGGGTAAGC+TGG + chr6_1:81137184-81137203 None:intergenic 50.0%
GCATCACTAGGAGCTTGCAT+TGG + chr6_1:81137319-81137338 None:intergenic 50.0%
GACAACGAGCAGTGTTTGTC+AGG - chr6_1:81137379-81137398 Msa0894720:intron 50.0%
GTTGAGGAGCGATCTTTGAC+TGG - chr6_1:81137412-81137431 Msa0894720:intron 50.0%
TAGAGGAACACCCAGTGTCA+GGG - chr6_1:81137446-81137465 Msa0894720:CDS 50.0%
CTTCATGCAACCCTGACACT+GGG + chr6_1:81137459-81137478 None:intergenic 50.0%
CCGGCAGAGTTATCAACCTT+AGG + chr6_1:81137493-81137512 None:intergenic 50.0%
!! AAGGTTGATAACTCTGCCGG+GGG - chr6_1:81137493-81137512 Msa0894720:intron 50.0%
CATCTGAGCTAGCATATGCC+AGG + chr6_1:81137528-81137547 None:intergenic 50.0%
TGTCGGACACTGACATGGGT+TGG - chr6_1:81132849-81132868 Msa0894720:CDS 55.0%
! GTTTTGCAATCGCGGTTGGC+GGG - chr6_1:81132937-81132956 Msa0894720:intron 55.0%
GCTATTGCAGCTCCATAGCG+TGG + chr6_1:81132972-81132991 None:intergenic 55.0%
GTCAGAGGGAGCAAGATGAG+TGG - chr6_1:81133686-81133705 Msa0894720:intron 55.0%
GGAAGAAACCTGTCCGAACC+AGG - chr6_1:81134024-81134043 Msa0894720:CDS 55.0%
GAACGACGCTCTTCCTGGTT+CGG + chr6_1:81134040-81134059 None:intergenic 55.0%
ACGTTGAACGACGCTCTTCC+TGG + chr6_1:81134045-81134064 None:intergenic 55.0%
TGTGTGTGTGTGGGTGGTTG+GGG + chr6_1:81134362-81134381 None:intergenic 55.0%
GTGTGTGTGTGTGGGTGGTT+GGG + chr6_1:81134363-81134382 None:intergenic 55.0%
GATAGGTGTGTGTGTGTGGG+TGG + chr6_1:81134368-81134387 None:intergenic 55.0%
ATCGTGCGATCCTACGAGCT+GGG + chr6_1:81134687-81134706 None:intergenic 55.0%
AGAGCAAAGTCGAAGCACGG+CGG + chr6_1:81134729-81134748 None:intergenic 55.0%
CGCAGAGCAAAGTCGAAGCA+CGG + chr6_1:81134732-81134751 None:intergenic 55.0%
TTTCTGCTGCGGCAGCTCTA+TGG - chr6_1:81134894-81134913 Msa0894720:intron 55.0%
TTCTGCTGCGGCAGCTCTAT+GGG - chr6_1:81134895-81134914 Msa0894720:intron 55.0%
GCAGCTCTATGGGGAAGAAG+AGG - chr6_1:81134905-81134924 Msa0894720:intron 55.0%
CCTGTGCATTCAGAGCAAGG+TGG + chr6_1:81135130-81135149 None:intergenic 55.0%
! CCACCTTGCTCTGAATGCAC+AGG - chr6_1:81135127-81135146 Msa0894720:intron 55.0%
CCTACGTAGGTTCGATTGGC+TGG + chr6_1:81135393-81135412 None:intergenic 55.0%
CCAGCCAATCGAACCTACGT+AGG - chr6_1:81135390-81135409 Msa0894720:intron 55.0%
! TTCTGATAACGTGCCCCGAC+AGG - chr6_1:81135695-81135714 Msa0894720:intron 55.0%
! TCTGATAACGTGCCCCGACA+GGG - chr6_1:81135696-81135715 Msa0894720:intron 55.0%
AGGAAGCCAAGATCCCTGTC+GGG + chr6_1:81135712-81135731 None:intergenic 55.0%
GAGGAAGCCAAGATCCCTGT+CGG + chr6_1:81135713-81135732 None:intergenic 55.0%
GGAGGTTATCTTCATGGGCG+AGG - chr6_1:81135780-81135799 Msa0894720:intron 55.0%
GGTTATCTTCATGGGCGAGG+CGG - chr6_1:81135783-81135802 Msa0894720:intron 55.0%
!! GTTTTTCAGTGCGACGCAGG+AGG + chr6_1:81136000-81136019 None:intergenic 55.0%
CCTGCGTCGCACTGAAAAAC+GGG - chr6_1:81136000-81136019 Msa0894720:intron 55.0%
ACAGGCATAGGGGTAAGCTG+GGG + chr6_1:81137182-81137201 None:intergenic 55.0%
CCTTCAAACCTCGGTCGCTT+AGG + chr6_1:81137289-81137308 None:intergenic 55.0%
CCTAAGCGACCGAGGTTTGA+AGG - chr6_1:81137286-81137305 Msa0894720:intron 55.0%
GTAGAGGAACACCCAGTGTC+AGG - chr6_1:81137445-81137464 Msa0894720:CDS 55.0%
CCTTCATGCAACCCTGACAC+TGG + chr6_1:81137460-81137479 None:intergenic 55.0%
CCAGTGTCAGGGTTGCATGA+AGG - chr6_1:81137457-81137476 Msa0894720:CDS 55.0%
AACTCTGCCGGGGGATTACT+AGG - chr6_1:81137502-81137521 Msa0894720:intron 55.0%
!! ACGCTCTTCCTGGTTCGGAC+AGG + chr6_1:81134035-81134054 None:intergenic 60.0%
GGTGTGTGTGTGTGGGTGGT+TGG + chr6_1:81134364-81134383 None:intergenic 60.0%
GGACTCGATCCTGGCTACCT+TGG + chr6_1:81134666-81134685 None:intergenic 60.0%
TACGAGCTGGGACTCGATCC+TGG + chr6_1:81134675-81134694 None:intergenic 60.0%
AGGATCGAGTCCCAGCTCGT+AGG - chr6_1:81134674-81134693 Msa0894720:intron 60.0%
GATCGTGCGATCCTACGAGC+TGG + chr6_1:81134688-81134707 None:intergenic 60.0%
AAAGTCGAAGCACGGCGGAG+TGG + chr6_1:81134724-81134743 None:intergenic 60.0%
TCTGCTGCGGCAGCTCTATG+GGG - chr6_1:81134896-81134915 Msa0894720:intron 60.0%
GGAAGCCAAGATCCCTGTCG+GGG + chr6_1:81135711-81135730 None:intergenic 60.0%
CAAGAAGTTGCTGGGGAGCG+TGG - chr6_1:81135759-81135778 Msa0894720:intron 60.0%
!! CCCGTTTTTCAGTGCGACGC+AGG + chr6_1:81136003-81136022 None:intergenic 60.0%
CAGCAGCGAACACAGACTCC+AGG + chr6_1:81136130-81136149 None:intergenic 60.0%
TGCCAGGCCTAGTAATCCCC+CGG + chr6_1:81137512-81137531 None:intergenic 60.0%
ACGTGCCCCGACAGGGATCT+TGG - chr6_1:81135703-81135722 Msa0894720:intron 65.0%
! GAAGTTGCTGGGGAGCGTGG+AGG - chr6_1:81135762-81135781 Msa0894720:intron 65.0%
GGCATAGGGGTAAGCTGGGG+TGG + chr6_1:81137179-81137198 None:intergenic 65.0%
TGCCGGGGGATTACTAGGCC+TGG - chr6_1:81137507-81137526 Msa0894720:intron 65.0%
GAAGCACGGCGGAGTGGCTG+AGG + chr6_1:81134718-81134737 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 81132150 81137827 81132150 ID=Msa0894720;Name=Msa0894720
chr6_1 mRNA 81132150 81137827 81132150 ID=Msa0894720-mRNA-1;Parent=Msa0894720;Name=Msa0894720-mRNA-1;_AED=0.22;_eAED=0.22;_QI=181|0.8|0.66|1|0.6|0.66|6|269|261
chr6_1 exon 81132150 81132728 81132150 ID=Msa0894720-mRNA-1:exon:13641;Parent=Msa0894720-mRNA-1
chr6_1 exon 81132814 81132900 81132814 ID=Msa0894720-mRNA-1:exon:13640;Parent=Msa0894720-mRNA-1
chr6_1 exon 81133825 81134044 81133825 ID=Msa0894720-mRNA-1:exon:13639;Parent=Msa0894720-mRNA-1
chr6_1 exon 81134173 81134221 81134173 ID=Msa0894720-mRNA-1:exon:13638;Parent=Msa0894720-mRNA-1
chr6_1 exon 81137413 81137483 81137413 ID=Msa0894720-mRNA-1:exon:13637;Parent=Msa0894720-mRNA-1
chr6_1 exon 81137598 81137827 81137598 ID=Msa0894720-mRNA-1:exon:13636;Parent=Msa0894720-mRNA-1
chr6_1 five_prime_UTR 81137647 81137827 81137647 ID=Msa0894720-mRNA-1:five_prime_utr;Parent=Msa0894720-mRNA-1
chr6_1 CDS 81137598 81137646 81137598 ID=Msa0894720-mRNA-1:cds;Parent=Msa0894720-mRNA-1
chr6_1 CDS 81137413 81137483 81137413 ID=Msa0894720-mRNA-1:cds;Parent=Msa0894720-mRNA-1
chr6_1 CDS 81134173 81134221 81134173 ID=Msa0894720-mRNA-1:cds;Parent=Msa0894720-mRNA-1
chr6_1 CDS 81133825 81134044 81133825 ID=Msa0894720-mRNA-1:cds;Parent=Msa0894720-mRNA-1
chr6_1 CDS 81132814 81132900 81132814 ID=Msa0894720-mRNA-1:cds;Parent=Msa0894720-mRNA-1
chr6_1 CDS 81132419 81132728 81132419 ID=Msa0894720-mRNA-1:cds;Parent=Msa0894720-mRNA-1
chr6_1 three_prime_UTR 81132150 81132418 81132150 ID=Msa0894720-mRNA-1:three_prime_utr;Parent=Msa0894720-mRNA-1
Gene Sequence

>Msa0894720

ATGGCAGGAAGAGAAGTTCGTGAATACACCAATCTTACCGACCCCAAAGATAAGAAATTGGGTAAAGGAAAAGATAAGATTGATGATGAAGACGTTACTTTCCAACGCATGGTTGCAAAGATGCAAGAAGTTGCTGGGGAGCGTGGAGGTTATCTTCATGGGCGAGGCGCCTTGGACAGTGACGATCTACTATATCTCAAGGAGCAAATGGAAGCTGAGGAAGATGCAGAACGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCTTTTAAGATATCCTTTTATGTTCATTTCCTTTCTGTAGATAACAGTCCCGTGTTTCTTTCACATACATCTTGGAGTCAGACACAATTTTTTGTTCCTGGAGTCTGTGTTCGCTGCTGCAAATACAGAGCGGCAAGTTTAGCAGATTCTTCACCTGCATCAGTACCTTTACCATTACGTGTTGAGCCAAAGCCAAAGAGTGGGATCAGGCAGCAAGATCTGCTGAAAAAAGTTGTTGAGATTAAACCTAAGCGACCGAGGTTTGAAGGCAATAAGCCAATGCAAGCTCCTAGTGATGCTTCTATTACTAATCGACAGCATGATCGTGATAAGTTCAAAGACAACGAGCAGTGTTTGTCAGGACCAAAGAAAGTTGAGGAGCGATCTTTGACTGGATCGAAGAAAGTAGAGGAACACCCAGTGTCAGGGTTGCATGAAGGTGAAACTAAGCCTAAGGTTGATAACTCTGCCGGGGGATTACTAGGCCTGGCATATGCTAGCTCAGATGATGATGAATGA

Protein sequence

>Msa0894720

MAGREVREYTNLTDPKDKKLGKGKDKIDDEDVTFQRMVAKMQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKISFYVHFLSVDNSPVFLSHTSWSQTQFFVPGVCVRCCKYRAASLADSSPASVPLPLRVEPKPKSGIRQQDLLKKVVEIKPKRPRFEGNKPMQAPSDASITNRQHDRDKFKDNEQCLSGPKKVEERSLTGSKKVEEHPVSGLHEGETKPKVDNSAGGLLGLAYASSDDDE*